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Program Publications

Title Authors Journal PubMedID Publication Date
Psychophysiological responses to stress following alcohol intake in social drinkers who are at risk of hazardous drinking. Nakajima, Motohiro; Kumar, Santosh; Wittmers, Lorentz; Scott, Marcia S; al'Absi, Mustafa Biological psychology. 23313460 2013 Apr;
Altered relationships between age and functional brain activation in adolescents at clinical high risk for psychosis. Karlsgodt, Katherine H; van Erp, Theo G M; Bearden, Carrie E; Cannon, Tyrone D Psychiatry research. 24144510 2014 Jan 30;
The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain imaging and behavior 24399358 2014 Jun
A group-mediated, home-based physical activity intervention for patients with peripheral artery disease: effects on social and psychological function. Rejeski, W Jack; Spring, Bonnie; Domanchuk, Kathryn; Tao, Huimin; Tian, Lu; Zhao, Lihui; McDermott, Mary M Journal of translational medicine. 24467875 2014 Jan 28;
Single nucleotide polymorphism in the neuroplastin locus associates with cortical thickness and intellectual ability in adolescents. Desrivières, S; Lourdusamy, A; Tao, C; Toro, R; Jia, T; Loth, E; Medina, L M; Kepa, A; Fernandes, A; Ruggeri, B; Carvalho, F M; Cocks, G; Banaschewski, T; Barker, G J; Bokde, A L W; Büchel, C; Conrod, P J; Flor, H; Heinz, A; Gallinat, J; Garavan, H; Gowland, P; Brühl, R; Lawrence, C; Mann, K; Martinot, M L P; Nees, F; Lathrop, M; Poline, J-B; Rietschel, M; Thompson, P; Fauth-Bühler, M; Smolka, M N; Pausova, Z; Paus, T; Feng, J; Schumann, G; IMAGEN Consortium Molecular psychiatry. 24514566 2015 Feb;
Hippocampal and amygdalar local structural differences in elderly patients with schizophrenia. Prestia, Annapaola; Cavedo, Enrica; Boccardi, Marina; Muscio, Cristina; Adorni, Andrea; Geroldi, Cristina; Bonetti, Matteo; Thompson, Paul M; Frisoni, Giovanni B The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry. 24534522 2015 Jan;
Visual hallucinations are associated with hyperconnectivity between the amygdala and visual cortex in people with a diagnosis of schizophrenia. Ford, Judith M; Palzes, Vanessa A; Roach, Brian J; Potkin, Steven G; van Erp, Theo G M; Turner, Jessica A; Mueller, Bryon A; Calhoun, Vincent D; Voyvodic, Jim; Belger, Aysenil; Bustillo, Juan; Vaidya, Jatin G; Preda, Adrian; McEwen, Sarah C; Functional Imaging Biomedical Informatics Research Network; Mathalon, Daniel H Schizophrenia bulletin. 24619536 2015 Jan;
Verbal memory declines more rapidly with age in HIV infected versus uninfected adults. Seider, Talia R; Luo, Xi; Gongvatana, Assawin; Devlin, Kathryn N; de la Monte, Suzanne M; Chasman, Jesse D; Yan, Peisi; Tashima, Karen T; Navia, Bradford; Cohen, Ronald A Journal of clinical and experimental neuropsychology. 24645772 2014;
Neuroanatomical correlates of emotional blunting in behavioral variant frontotemporal dementia and early-onset Alzheimer's disease. Lee, Grace J; Lu, Po H; Mather, Michelle J; Shapira, Jill; Jimenez, Elvira; Leow, Alex D; Thompson, Paul M; Mendez, Mario F Journal of Alzheimer's disease : JAD. 24685626 2014;
Predictors of CNS injury as measured by proton magnetic resonance spectroscopy in the setting of chronic HIV infection and CART. Harezlak, J; Cohen, R; Gongvatana, A; Taylor, M; Buchthal, S; Schifitto, G; Zhong, J; Daar, E S; Alger, J R; Brown, M; Singer, E J; Campbell, T B; McMahon, D; So, Y T; Yiannoutsos, C T; Navia, B A; HIV Neuroimaging Consortium Journal of neurovirology. 24696364 2014 Jun;
A latent class analysis of cancer risk behaviors among U.S. college students. Kang, Joseph; Ciecierski, Christina Czart; Malin, Emily L; Carroll, Allison J; Gidea, Marian; Craft, Lynette L; Spring, Bonnie; Hitsman, Brian Preventive medicine. 24704131 2014 Jul;
Medial temporal atrophy in early and late-onset Alzheimer's disease. Cavedo, Enrica; Pievani, Michela; Boccardi, Marina; Galluzzi, Samantha; Bocchetta, Martina; Bonetti, Matteo; Thompson, Paul M; Frisoni, Giovanni B Neurobiology of aging. 24721821 2014 Sep;
Relationship between salivary cortisol and depression in adolescent survivors of a major natural disaster. Yonekura, Takashi; Takeda, Kazunori; Shetty, Vivek; Yamaguchi, Masaki The journal of physiological sciences : JPS. 24744089 2014 Jul;
Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics. Jin, Yan; Shi, Yonggang; Zhan, Liang; Gutman, Boris A; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margaret J; Toga, Arthur W; Thompson, Paul M NeuroImage. 24821529 2014 Oct 15;
Left atrial decompression through unidirectional left-to-right interatrial shunt for the treatment of left heart failure: first-in-man experience with the V-Wave device. Amat-Santos, Ignacio J; Bergeron, Sebastien; Bernier, Mathieu; Allende, Ricardo; Barbosa Ribeiro, Henrique; Urena, Marina; Pibarot, Philippe; Verheye, Stefan; Keren, Gad; Yaacoby, Menashe; Nitzan, Yaacov; Abraham, William T; Rodés-Cabau, Josep EuroIntervention : journal of EuroPCR in collaboration with the Working Group on Interventional Cardiology of the European Society of Cardiology. 24832489 2015 Jan;
Optimization of remotely delivered intensive lifestyle treatment for obesity using the Multiphase Optimization Strategy: Opt-IN study protocol. Pellegrini, Christine A; Hoffman, Sara A; Collins, Linda M; Spring, Bonnie Contemporary clinical trials. 24846621 2014 Jul;
Whole-genome analyses of whole-brain data: working within an expanded search space. Medland, Sarah E; Jahanshad, Neda; Neale, Benjamin M; Thompson, Paul M Nature neuroscience 24866045 2014 Jun
Neural dysregulation during a working memory task in human immunodeficiency virus-seropositive and hepatitis C coinfected individuals. Caldwell, J Z K; Gongvatana, A; Navia, B A; Sweet, L H; Tashima, K; Ding, M; Cohen, R A Journal of neurovirology. 24867610 2014 Aug;
A multiple imputation strategy for sequential multiple assignment randomized trials. Shortreed, Susan M; Laber, Eric; Scott Stroup, T; Pineau, Joelle; Murphy, Susan A Statistics in medicine. 24919867 2014 Oct 30;
Investigating brain connectivity heritability in a twin study using diffusion imaging data. Shen, Kai-Kai; Rose, Stephen; Fripp, Jurgen; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Thompson, Paul M; Wright, Margaret J; Salvado, Olivier NeuroImage. 24973604 2014 Oct 15;
Healthy lifestyle change and subclinical atherosclerosis in young adults: Coronary Artery Risk Development in Young Adults (CARDIA) study. Spring, Bonnie; Moller, Arlen C; Colangelo, Laura A; Siddique, Juned; Roehrig, Megan; Daviglus, Martha L; Polak, Joseph F; Reis, Jared P; Sidney, Stephen; Liu, Kiang Circulation. 24982115 2014 Jul 01;
Serum cholesterol and variant in cholesterol-related gene CETP predict white matter microstructure. Warstadt, Nicholus M; Dennis, Emily L; Jahanshad, Neda; Kohannim, Omid; Nir, Talia M; McMahon, Katie L; de Zubicaray, Greig I; Montgomery, Grant W; Henders, Anjali K; Martin, Nicholas G; Whitfield, John B; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, M Neurobiology of aging 24997672 2014 Jun 2
Mediodorsal and visual thalamic connectivity differ in schizophrenia and bipolar disorder with and without psychosis history. Anticevic, Alan; Yang, Genevieve; Savic, Aleksandar; Murray, John D; Cole, Michael W; Repovs, Grega; Pearlson, Godfrey D; Glahn, David C Schizophrenia bulletin. 25031221 2014 Nov;
Progressive reduction in cortical thickness as psychosis develops: a multisite longitudinal neuroimaging study of youth at elevated clinical risk. Cannon, Tyrone D; Chung, Yoonho; He, George; Sun, Daqiang; Jacobson, Aron; van Erp, Theo G M; McEwen, Sarah; Addington, Jean; Bearden, Carrie E; Cadenhead, Kristin; Cornblatt, Barbara; Mathalon, Daniel H; McGlashan, Thomas; Perkins, Diana; Jeffries, Clark; Seidman, Larry J; Tsuang, Ming; Walker, Elaine; Woods, Scott W; Heinssen, Robert; North American Prodrome Longitudinal Study Consortium Biological psychiatry. 25034946 2015 Jan 15;
Functional connectivity in autosomal dominant and late-onset Alzheimer disease. Thomas, Jewell B; Brier, Matthew R; Bateman, Randall J; Snyder, Abraham Z; Benzinger, Tammie L; Xiong, Chengjie; Raichle, Marcus; Holtzman, David M; Sperling, Reisa A; Mayeux, Richard; Ghetti, Bernardino; Ringman, John M; Salloway, Stephen; McDade, Eric; Rossor, Martin N; Ourselin, Sebastien; Schofield, Peter R; Masters, Colin L; Martins, Ralph N; Weiner, Michael W; Thompson, Paul M; Fox, Nick C; Koeppe, Robert A; Jack Jr, Clifford R; Mathis, Chester A; Oliver, Angela; Blazey, Tyler M; Moulder, Krista; Buckles, Virginia; Hornbeck, Russ; Chhatwal, Jasmeer; Schultz, Aaron P; Goate, Alison M; Fagan, Anne M; Cairns, Nigel J; Marcus, Daniel S; Morris, John C; Ances, Beau M JAMA neurology. 25069482 2014 Sep;
Obesity gene NEGR1 associated with white matter integrity in healthy young adults. Dennis, Emily L; Jahanshad, Neda; Braskie, Meredith N; Warstadt, Nicholus M; Hibar, Derrek P; Kohannim, Omid; Nir, Talia M; McMahon, Katie L; de Zubicaray, Greig I; Montgomery, Grant W; Martin, Nicholas G; Toga, Arthur W; Wright, Margaret J; Thompson, Paul M NeuroImage. 25072390 2014 Nov 15;
Shared genetic factors influence amygdala volumes and risk for alcoholism. Dager, Alecia D; McKay, D Reese; Kent Jr, Jack W; Curran, Joanne E; Knowles, Emma; Sprooten, Emma; Göring, Harald H H; Dyer, Thomas D; Pearlson, Godfrey D; Olvera, Rene L; Fox, Peter T; Lovallo, William R; Duggirala, Ravi; Almasy, Laura; Blangero, John; Glahn, David C Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 25079289 2015 Jan;
Regular fish consumption and age-related brain gray matter loss. Raji, Cyrus A; Erickson, Kirk I; Lopez, Oscar L; Kuller, Lewis H; Gach, H Michael; Thompson, Paul M; Riverol, Mario; Becker, James T American journal of preventive medicine. 25084680 2014 Oct;
Skull-stripping with machine learning deformable organisms. Prasad, Gautam; Joshi, Anand A; Feng, Albert; Toga, Arthur W; Thompson, Paul M; Terzopoulos, Demetri Journal of neuroscience methods. 25124851 2014 Oct 30;
Heritability of head motion during resting state functional MRI in 462 healthy twins. Couvy-Duchesne, Baptiste; Blokland, Gabriëlla A M; Hickie, Ian B; Thompson, Paul M; Martin, Nicholas G; de Zubicaray, Greig I; McMahon, Katie L; Wright, Margaret J NeuroImage. 25132021 2014 Nov 15;
Sparse kernel machine regression for ordinal outcomes. Shen, Yuanyuan; Liao, Katherine P; Cai, Tianxi Biometrics. 25196727 2015 Mar;
Genetic architecture of subcortical brain regions: common and region-specific genetic contributions. Rentería, M E; Hansell, N K; Strike, L T; McMahon, K L; de Zubicaray, G I; Hickie, I B; Thompson, P M; Martin, N G; Medland, S E; Wright, M J Genes, brain, and behavior. 25199620 2014 Nov;
Relationship between Systemic and Cerebral Vascular Disease and Brain Structure Integrity in Normal Elderly Individuals. Riverol, Mario; Becker, James T; López, Oscar L; Raji, Cyrus A; Thompson, Paul M; Carmichael, Owen T; Gach, H Michael; Longstreth Jr, William T; Fried, Linda; Tracy, Russell P; Kuller, Lewis H Journal of Alzheimer's disease : JAD. 25213770 2015;
Designing adaptive intensive interventions using methods from engineering. Lagoa, Constantino M; Bekiroglu, Korkut; Lanza, Stephanie T; Murphy, Susan A Journal of consulting and clinical psychology. 25244394 2014 Oct;
Physical activity, body mass index, and brain atrophy in Alzheimer's disease. Boyle, Christina P; Raji, Cyrus A; Erickson, Kirk I; Lopez, Oscar L; Becker, James T; Gach, H Michael; Longstreth Jr, W T; Teverovskiy, Leonid; Kuller, Lewis H; Carmichael, Owen T; Thompson, Paul M Neurobiology of aging. 25248607 2015 Jan;
Seemingly unrelated regression empowers detection of network failure in dementia. Jahanshad, Neda; Nir, Talia M; Toga, Arthur W; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative Neurobiology of aging. 25257986 2015 Jan;
Empowering imaging biomarkers of Alzheimer's disease. Gutman, Boris A; Wang, Yalin; Yanovsky, Igor; Hua, Xue; Toga, Arthur W; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative Neurobiology of aging. 25260848 2015 Jan;
Genome-wide interaction analysis reveals replicated epistatic effects on brain structure. Hibar, Derrek P; Stein, Jason L; Jahanshad, Neda; Kohannim, Omid; Hua, Xue; Toga, Arthur W; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Wright, Margaret J; Alzheimer's Disease Neuroimaging Initiative; Weiner, Michael W; Thompson, Paul M Neurobiology of aging. 25264344 2015 Jan;
Brain connectivity and novel network measures for Alzheimer's disease classification. Prasad, Gautam; Joshi, Shantanu H; Nir, Talia M; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) Neurobiology of aging. 25264345 2015 Jan;
Introduction to SMART designs for the development of adaptive interventions: with application to weight loss research. Almirall, Daniel; Nahum-Shani, Inbal; Sherwood, Nancy E; Murphy, Susan A Translational behavioral medicine. 25264466 2014 Sep;
The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. Wilks, Christopher; Cline, Melissa S; Weiler, Erich; Diehkans, Mark; Craft, Brian; Martin, Christy; Murphy, Daniel; Pierce, Howdy; Black, John; Nelson, Donavan; Litzinger, Brian; Hatton, Thomas; Maltbie, Lori; Ainsworth, Michael; Allen, Patrick; Rosewood, Linda; Mitchell, Elizabeth; Smith, Bradley; Warner, Jim; Groboske, John; Telc, Haifang; Wilson, Daniel; Sanford, Brian; Schmidt, Hannes; Haussler, David; Maltbie, Daniel Database : the journal of biological databases and curation. 25267794 2014;
Alignathon: a competitive assessment of whole-genome alignment methods. Earl, Dent; Nguyen, Ngan; Hickey, Glenn; Harris, Robert S; Fitzgerald, Stephen; Beal, Kathryn; Seledtsov, Igor; Molodtsov, Vladimir; Raney, Brian J; Clawson, Hiram; Kim, Jaebum; Kemena, Carsten; Chang, Jia-Ming; Erb, Ionas; Poliakov, Alexander; Hou, Minmei; Herrero, Javier; Kent, William James; Solovyev, Victor; Darling, Aaron E; Ma, Jian; Notredame, Cedric; Brudno, Michael; Dubchak, Inna; Haussler, David; Paten, Benedict Genome research. 25273068 2014 Dec;
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons. Jacobs, Frank M J; Greenberg, David; Nguyen, Ngan; Haeussler, Maximilian; Ewing, Adam D; Katzman, Sol; Paten, Benedict; Salama, Sofie R; Haussler, David Nature. 25274305 2014 Dec 11;
Joint genetic analysis of hippocampal size in mouse and human identifies a novel gene linked to neurodegenerative disease. Ashbrook, David G; Williams, Robert W; Lu, Lu; Stein, Jason L; Hibar, Derrek P; Nichols, Thomas E; Medland, Sarah E; Thompson, Paul M; Hager, Reinmar BMC genomics. 25280473 2014 Oct 03;
Studying ventricular abnormalities in mild cognitive impairment with hyperbolic Ricci flow and tensor-based morphometry. Shi, Jie; Stonnington, Cynthia M; Thompson, Paul M; Chen, Kewei; Gutman, Boris; Reschke, Cole; Baxter, Leslie C; Reiman, Eric M; Caselli, Richard J; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative NeuroImage. 25285374 2015 Jan 01;
A randomized controlled trial to evaluate the safety and efficacy of cardiac contractility modulation in patients with moderately reduced left ventricular ejection fraction and a narrow QRS duration: study rationale and design. Abraham, William T; Lindenfeld, JoAnn; Reddy, Vivek Y; Hasenfuss, Gerd; Kuck, Karl-Heinz; Boscardin, John; Gibbons, Robert; Burkhoff, Daniel; FIX-HF-5C Investigators and Coordinators Journal of cardiac failure. 25285748 2015 Jan;
Simulation studies as designed experiments: the comparison of penalized regression models in the ''large p, small n'' setting. Chaibub Neto, Elias; Bare, J Christopher; Margolin, Adam A PloS one. 25289666 2014;
Structural abnormality of the corticospinal tract in major depressive disorder. Sacchet, Matthew D; Prasad, Gautam; Foland-Ross, Lara C; Joshi, Shantanu H; Hamilton, J Paul; Thompson, Paul M; Gotlib, Ian H Biology of mood & anxiety disorders. 25295159 2014;
Mapping ventricular expansion onto cortical gray matter in older adults. Madsen, Sarah K; Gutman, Boris A; Joshi, Shantanu H; Toga, Arthur W; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) Neurobiology of aging. 25311280 2015 Jan;
Toward better benchmarking: challenge-based methods assessment in cancer genomics. Boutros, Paul C; Margolin, Adam A; Stuart, Joshua M; Califano, Andrea; Stolovitzky, Gustavo Genome biology. 25314947 2014 Sep 17;
Pleiotropic locus for emotion recognition and amygdala volume identified using univariate and bivariate linkage. Knowles, Emma E M; McKay, D Reese; Kent Jr, Jack W; Sprooten, Emma; Carless, Melanie A; Curran, Joanne E; de Almeida, Marcio A A; Dyer, Thomas D; Göring, Harald H H; Olvera, Rene L; Duggirala, Ravi; Fox, Peter T; Almasy, Laura; Blangero, John; Glahn, David C The American journal of psychiatry. 25322361 2015 Feb 1;
Navigating protected genomics data with UCSC Genome Browser in a Box. Haeussler, Maximilian; Raney, Brian J; Hinrichs, Angie S; Clawson, Hiram; Zweig, Ann S; Karolchik, Donna; Casper, Jonathan; Speir, Matthew L; Haussler, David; Kent, W James Bioinformatics (Oxford, England). 25348212 2015 Mar 01;
Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis. Benyamin, Beben; Esko, Tonu; Ried, Janina S; Radhakrishnan, Aparna; Vermeulen, Sita H; Traglia, Michela; Gögele, Martin; Anderson, Denise; Broer, Linda; Podmore, Clara; Luan, Jian'an; Kutalik, Zoltan; Sanna, Serena; van der Meer, Peter; Tanaka, Toshiko; Wang, Fudi; Westra, Harm-Jan; Franke, Lude; Mihailov, Evelin; Milani, Lili; Hälldin, Jonas; Häldin, Jonas; Winkelmann, Juliane; Meitinger, Thomas; Thiery, Joachim; Peters, Annette; Waldenberger, Melanie; Rendon, Augusto; Jolley, Jennifer; Sambrook, Jennifer; Kiemeney, Lambertus A; Sweep, Fred C; Sala, Cinzia F; Schwienbacher, Christine; Pichler, Irene; Hui, Jennie; Demirkan, Ayse; Isaacs, Aaron; Amin, Najaf; Steri, Maristella; Waeber, Gérard; Verweij, Niek; Powell, Joseph E; Nyholt, Dale R; Heath, Andrew C; Madden, Pamela A F; Visscher, Peter M; Wright, Margaret J; Montgomery, Grant W; Martin, Nicholas G; Hernandez, Dena; Bandinelli, Stefania; van der Harst, Pim; Uda, Manuela; Vollenweider, Peter; Scott, Robert A; Langenberg, Claudia; Wareham, Nicholas J; InterAct Consortium; van Duijn, Cornelia; Beilby, John; Pramstaller, Peter P; Hicks, Andrew A; Ouwehand, Willem H; Oexle, Konrad; Gieger, Christian; Metspalu, Andres; Camaschella, Clara; Toniolo, Daniela; Swinkels, Dorine W; Whitfield, John B Nature communications. 25352340 2014 Oct 29;
Dynamic treatment regimes: technical challenges and applications. Laber, Eric B; Lizotte, Daniel J; Qian, Min; Pelham, William E; Murphy, Susan A Electronic journal of statistics. 25356091 2014;
Thalamic alterations in preterm neonates and their relation to ventral striatum disturbances revealed by a combined shape and pose analysis. Lao, Yi; Wang, Yalin; Shi, Jie; Ceschin, Rafael; Nelson, Marvin D; Panigrahy, Ashok; Leporé, Natasha Brain structure & function. 25366970 2016 Jan;
Associations between depression and anxiety symptoms and retinal vessel caliber in adolescents and young adults. Meier, Madeline H; Gillespie, Nathan A; Hansell, Narelle K; Hewitt, Alex W; Hickie, Ian B; Lu, Yi; MacGregor, Stuart; Medland, Sarah E; Sun, Cong; Wong, Tien Y; Wright, Margaret J; Zhu, Gu; Martin, Nicholas G; Mackey, David A Psychosomatic medicine. 25373892 2014 Nov-Dec;
The UCSC Cancer Genomics Browser: update 2015. Goldman, Mary; Craft, Brian; Swatloski, Teresa; Cline, Melissa; Morozova, Olena; Diekhans, Mark; Haussler, David; Zhu, Jingchun Nucleic acids research. 25392408 2015 Jan;
A Comparison of Methamphetamine Users to a Matched NHANES Cohort: Propensity Score Analyses for Oral Health Care and Dental Service Need. Murphy, Debra A; Harrell, Lauren; Fintzy, Rachel; Belin, Thomas R; Gutierrez, Alexis; Vitero, Steven J; Shetty, Vivek The journal of behavioral health services & research. 25398257 2016 Oct;
Dynamic Treatment Regimes. Chakraborty, Bibhas; Murphy, Susan A Annual review of statistics and its application. 25401119 2014;
RADIA: RNA and DNA integrated analysis for somatic mutation detection. Radenbaugh, Amie J; Ma, Singer; Ewing, Adam; Stuart, Joshua M; Collisson, Eric A; Zhu, Jingchun; Haussler, David PloS one. 25405470 2014;
Connectopathy in ageing and dementia. Toga, Arthur W; Thompson, Paul M Brain : a journal of neurology. 25413934 2014 Dec;
Processing shotgun proteomics data on the Amazon cloud with the trans-proteomic pipeline. Slagel, Joseph; Mendoza, Luis; Shteynberg, David; Deutsch, Eric W; Moritz, Robert L Molecular & cellular proteomics : MCP. 25418363 2015 Feb;
Altered white matter microstructure is associated with social cognition and psychotic symptoms in 22q11.2 microdeletion syndrome. Jalbrzikowski, Maria; Villalon-Reina, Julio E; Karlsgodt, Katherine H; Senturk, Damla; Chow, Carolyn; Thompson, Paul M; Bearden, Carrie E Frontiers in behavioral neuroscience. 25426042 2014;
Comparative Effectiveness Research: A Roadmap for Physical Activity and Lifestyle. Jakicic, John M; Sox, Harold; Blair, Steven N; Bensink, Mark; Johnson, William G; King, Abby C; Lee, I-Min; Nahum-Shani, Inbal; Sallis, James F; Sallis, Robert E; Craft, Lynette; Whitehead, James R; Ainsworth, Barbara E Medicine and science in sports and exercise. 25426735 2015 Aug;
The UCSC Genome Browser database: 2015 update. Rosenbloom, Kate R; Armstrong, Joel; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Dreszer, Timothy R; Fujita, Pauline A; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A; Heitner, Steve; Hickey, Glenn; Hinrichs, Angie S; Hubley, Robert; Karolchik, Donna; Learned, Katrina; Lee, Brian T; Li, Chin H; Miga, Karen H; Nguyen, Ngan; Paten, Benedict; Raney, Brian J; Smit, Arian F A; Speir, Matthew L; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W James Nucleic acids research. 25428374 2015 Jan;
Occipital sources of resting-state alpha rhythms are related to local gray matter density in subjects with amnesic mild cognitive impairment and Alzheimer's disease. Babiloni, Claudio; Del Percio, Claudio; Boccardi, Marina; Lizio, Roberta; Lopez, Susanna; Carducci, Filippo; Marzano, Nicola; Soricelli, Andrea; Ferri, Raffaele; Triggiani, Antonio Ivano; Prestia, Annapaola; Salinari, Serenella; Rasser, Paul E; Basar, Erol; Famà, Francesco; Nobili, Flavio; Yener, Görsev; Emek-Sava?, Derya Durusu; Gesualdo, Loreto; Mundi, Ciro; Thompson, Paul M; Rossini, Paolo M; Frisoni, Giovanni B Neurobiology of aging. 25442118 2015 Feb;
Diffusion weighted imaging-based maximum density path analysis and classification of Alzheimer's disease. Nir, Talia M; Villalon-Reina, Julio E; Prasad, Gautam; Jahanshad, Neda; Joshi, Shantanu H; Toga, Arthur W; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) Neurobiology of aging. 25444597 2015 Jan;
Does MRI scan acceleration affect power to track brain change? Ching, Christopher R K; Hua, Xue; Hibar, Derrek P; Ward, Chadwick P; Gunter, Jeffrey L; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative Neurobiology of aging. 25444601 2015 Jan;
Connectivity network measures predict volumetric atrophy in mild cognitive impairment. Nir, Talia M; Jahanshad, Neda; Toga, Arthur W; Bernstein, Matt A; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) Neurobiology of aging. 25444606 2015 Jan;
Higher homocysteine associated with thinner cortical gray matter in 803 participants from the Alzheimer's Disease Neuroimaging Initiative. Madsen, Sarah K; Rajagopalan, Priya; Joshi, Shantanu H; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) Neurobiology of aging. 25444607 2015 Jan;
The effect of reverse remodeling on long-term survival in mildly symptomatic patients with heart failure receiving cardiac resynchronization therapy: results of the REVERSE study. Gold, Michael R; Daubert, Claude; Abraham, William T; Ghio, Stefano; St John Sutton, Martin; Hudnall, John Harrison; Cerkvenik, Jeffrey; Linde, Cecilia Heart rhythm. 25460860 2015 Mar;
Effects of changing from non-accelerated to accelerated MRI for follow-up in brain atrophy measurement. Leung, Kelvin K; Malone, Ian M; Ourselin, Sebastien; Gunter, Jeffrey L; Bernstein, Matt A; Thompson, Paul M; Jack Jr, Clifford R; Weiner, Michael W; Fox, Nick C; Alzheimer's Disease Neuroimaging Initiative NeuroImage. 25481794 2015 Feb 15;
Partial volume correction in quantitative amyloid imaging. Su, Yi; Blazey, Tyler M; Snyder, Abraham Z; Raichle, Marcus E; Marcus, Daniel S; Ances, Beau M; Bateman, Randall J; Cairns, Nigel J; Aldea, Patricia; Cash, Lisa; Christensen, Jon J; Friedrichsen, Karl; Hornbeck, Russ C; Farrar, Angela M; Owen, Christopher J; Mayeux, Richard; Brickman, Adam M; Klunk, William; Price, Julie C; Thompson, Paul M; Ghetti, Bernadino; Saykin, Andrew J; Sperling, Reisa A; Johnson, Keith A; Schofield, Peter R; Buckles, Virginia; Morris, John C; Benzinger, Tammie L S; Dominantly Inherited Alzheimer Network NeuroImage. 25485714 2015 Feb 15;
Carriers of a common variant in the dopamine transporter gene have greater dementia risk, cognitive decline, and faster ventricular expansion. Roussotte, Florence F; Gutman, Boris A; Hibar, Derrek P; Madsen, Sarah K; Narr, Katherine L; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) Alzheimer's & dementia : the journal of the Alzheimer's Association. 25496873 2015 Oct;
Genetics of microstructure of the corpus callosum in older adults. Kanchibhotla, Sri C; Mather, Karen A; Thalamuthu, Anbupalam; Zhuang, Lin; Schofield, Peter R; Kwok, John B J; Ames, David; Wright, Margaret J; Trollor, Julian N; Wen, Wei; Sachdev, Perminder S PloS one. 25514436 2014;
Identifying Drug (Cocaine) Intake Events from Acute Physiological Response in the Presence of Free-living Physical Activity. Hossain, Syed Monowar; Ali, Amin Ahsan; Rahman, Mahbubur; Ertin, Emre; Epstein, David; Kennedy, Ashley; Preston, Kenzie; Umbricht, Annie; Chen, Yixin; Kumar, Santosh IPSN : [proceedings]. IPSN (Conference). 25531010 2014;
Heart failure and respiratory hospitalizations are reduced in patients with heart failure and chronic obstructive pulmonary disease with the use of an implantable pulmonary artery pressure monitoring device. Krahnke, Jason S; Abraham, William T; Adamson, Philip B; Bourge, Robert C; Bauman, Jordan; Ginn, Greg; Martinez, Fernando J; Criner, Gerard J; Champion Trial Study Group Journal of cardiac failure. 25541376 2015 Mar;
Stratifying patients at the risk of heart failure hospitalization using existing device diagnostic thresholds. Sharma, Vinod; Rathman, Lisa D; Small, Roy S; Whellan, David J; Koehler, Jodi; Warman, Eduardo; Abraham, William T Heart & lung : the journal of critical care. 25543319 2015 Mar-Apr;
Abnormal hippocampal morphology in dissociative identity disorder and post-traumatic stress disorder correlates with childhood trauma and dissociative symptoms. Chalavi, Sima; Vissia, Eline M; Giesen, Mechteld E; Nijenhuis, Ellert R S; Draijer, Nel; Cole, James H; Dazzan, Paola; Pariante, Carmine M; Madsen, Sarah K; Rajagopalan, Priya; Thompson, Paul M; Toga, Arthur W; Veltman, Dick J; Reinders, Antje A T S Human brain mapping. 25545784 2015 May;
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A novel cortical thickness estimation method based on volumetric Laplace-Beltrami operator and heat kernel. Wang, Gang; Zhang, Xiaofeng; Su, Qingtang; Shi, Jie; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative Medical image analysis. 25700360 2015 May;
D-ribose aids heart failure patients with preserved ejection fraction and diastolic dysfunction: a pilot study. Bayram, Melike; St Cyr, J A; Abraham, William T Therapeutic advances in cardiovascular disease. 25701016 2015 Jun;
Predicting the Naturalistic Course of Major Depressive Disorder Using Clinical and Multimodal Neuroimaging Information: A Multivariate Pattern Recognition Study. Schmaal, Lianne; Marquand, Andre F; Rhebergen, Didi; van Tol, Marie-José; Ruhé, Henricus G; van der Wee, Nic J A; Veltman, Dick J; Penninx, Brenda W J H Biological psychiatry. 25702259 2015 Aug 15;
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Cognitive decline preceding the onset of psychosis in patients with 22q11.2 deletion syndrome. Vorstman, Jacob A S; Breetvelt, Elemi J; Duijff, Sasja N; Eliez, Stephan; Schneider, Maude; Jalbrzikowski, Maria; Armando, Marco; Vicari, Stefano; Shashi, Vandana; Hooper, Stephen R; Chow, Eva W C; Fung, Wai Lun Alan; Butcher, Nancy J; Young, Donald A; McDonald-McGinn, Donna M; Vogels, Annick; van Amelsvoort, Therese; Gothelf, Doron; Weinberger, Ronnie; Weizman, Abraham; Klaassen, Petra W J; Koops, Sanne; Kates, Wendy R; Antshel, Kevin M; Simon, Tony J; Ousley, Opal Y; Swillen, Ann; Gur, Raquel E; Bearden, Carrie E; Kahn, René S; Bassett, Anne S; International Consortium on Brain and Behavior in 22q11.2 Deletion Syndrome JAMA psychiatry. 25715178 2015 Apr;
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Interactive Querying over Large Network Data: Scalability, Visualization, and Interaction Design. Pienta, Robert; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen Horng IUI. International Conference on Intelligent User Interfaces. 25859567 2015 Mar-Apr;
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Structured learning for spatial information extraction from biomedical text: bacteria biotopes. Kordjamshidi, Parisa; Roth, Dan; Moens, Marie-Francine BMC bioinformatics. 25909637 2015;
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Toward a complete dataset of drug-drug interaction information from publicly available sources. Ayvaz, Serkan; Horn, John; Hassanzadeh, Oktie; Zhu, Qian; Stan, Johann; Tatonetti, Nicholas P; Vilar, Santiago; Brochhausen, Mathias; Samwald, Matthias; Rastegar-Mojarad, Majid; Dumontier, Michel; Boyce, Richard D Journal of biomedical informatics. 25917055 2015 Jun;
Continuous in-the-field measurement of heart rate: Correlates of drug use, craving, stress, and mood in polydrug users. Kennedy, Ashley P; Epstein, David H; Jobes, Michelle L; Agage, Daniel; Tyburski, Matthew; Phillips, Karran A; Ali, Amin Ahsan; Bari, Rummana; Hossain, Syed Monowar; Hovsepian, Karen; Rahman, Md Mahbubur; Ertin, Emre; Kumar, Santosh; Preston, Kenzie L Drug and alcohol dependence. 25920802 2015 Jun 01;
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Accurate and fast multiple-testing correction in eQTL studies. Sul, Jae Hoon; Raj, Towfique; de Jong, Simone; de Bakker, Paul I W; Raychaudhuri, Soumya; Ophoff, Roel A; Stranger, Barbara E; Eskin, Eleazar; Han, Buhm American journal of human genetics. 26027500 2015 Jun 4;
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Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium. van Erp, T G M; Hibar, D P; Rasmussen, J M; Glahn, D C; Pearlson, G D; Andreassen, O A; Agartz, I; Westlye, L T; Haukvik, U K; Dale, A M; Melle, I; Hartberg, C B; Gruber, O; Kraemer, B; Zilles, D; Donohoe, G; Kelly, S; McDonald, C; Morris, D W; Cannon, D M; Corvin, A; Machielsen, M W J; Koenders, L; de Haan, L; Veltman, D J; Satterthwaite, T D; Wolf, D H; Gur, R C; Gur, R E; Potkin, S G; Mathalon, D H; Mueller, B A; Preda, A; Macciardi, F; Ehrlich, S; Walton, E; Hass, J; Calhoun, V D; Bockholt, H J; Sponheim, S R; Shoemaker, J M; van Haren, N E M; Hulshoff Pol, H E; Pol, H E H; Ophoff, R A; Kahn, R S; Roiz-Santiañez, R; Crespo-Facorro, B; Wang, L; Alpert, K I; Jönsson, E G; Dimitrova, R; Bois, C; Whalley, H C; McIntosh, A M; Lawrie, S M; Hashimoto, R; Thompson, P M; Turner, J A Molecular psychiatry. 26033243 2016 Apr;
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Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research. Chen, Bin; Sirota, Marina; Fan-Minogue, Hua; Hadley, Dexter; Butte, Atul J BMC medical genomics. 26043652 2015;
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Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. Cancer Genome Atlas Research Network (see original citation for additional authors) The New England journal of medicine. 26061751 2015 Jun 25;
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Identification of causal genes for complex traits. Hormozdiari, Farhad; Kichaev, Gleb; Yang, Wen-Yun; Pasaniuc, Bogdan; Eskin, Eleazar Bioinformatics (Oxford, England). 26072484 2015 Jun 15;
Exploiting ontology graph for predicting sparsely annotated gene function. Wang, Sheng; Cho, Hyunghoon; Zhai, ChengXiang; Berger, Bonnie; Peng, Jian Bioinformatics (Oxford, England). 26072504 2015 Jun 15;
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Atrial natriuretic peptide in cardiovascular biology and disease (NPPA). Song, Wei; Wang, Hao; Wu, Qingyu Gene. 26074089 2015 Sep 10;
Edge-Centered DTI Connectivity Analysis: Application to Schizophrenia. Herskovits, Edward H; Hong, L Elliot; Kochunov, Peter; Sampath, Hemalatha; Chen, Rong Neuroinformatics. 26078102 2015 Oct;
Brain Imaging and Neurodevelopment in HIV-uninfected Thai Children Born to HIV-infected Mothers. Jahanshad, Neda; Couture, Marie-Claude; Prasitsuebsai, Wasana; Nir, Talia M; Aurpibul, Linda; Thompson, Paul M; Pruksakaew, Kanchana; Lerdlum, Sukalaya; Visrutaratna, Pannee; Catella, Stephanie; Desai, Akash; Kerr, Stephen J; Puthanakit, Thanyawee; Paul, Robert; Ananworanich, Jintanat; Valcour, Victor G; SEARCH 012 and PREDICT Study Groups The Pediatric infectious disease journal. 26090574 2015 Sep;
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Personalized Modeling for Prediction with Decision-Path Models. Visweswaran, Shyam; Ferreira, Antonio; Ribeiro, Guilherme A; Oliveira, Alexandre C; Cooper, Gregory F PloS one. 26098570 2015;
Perfusion shift from white to gray matter may account for processing speed deficits in schizophrenia. Wright, Susan N; Hong, L Elliot; Winkler, Anderson M; Chiappelli, Joshua; Nugent, Katie; Muellerklein, Florian; Du, Xioming; Rowland, Laura M; Wang, Danny J J; Kochunov, Peter Human brain mapping. 26108347 2015 Oct;
The center for expanded data annotation and retrieval. Musen, Mark A; Bean, Carol A; Cheung, Kei-Hoi; Dumontier, Michel; Durante, Kim A; Gevaert, Olivier; Gonzalez-Beltran, Alejandra; Khatri, Purvesh; Kleinstein, Steven H; O'Connor, Martin J; Pouliot, Yannick; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Wiser, Jeffrey A; CEDAR team Journal of the American Medical Informatics Association : JAMIA. 26112029 2015 Nov;
Subcortical brain alterations in major depressive disorder: findings from the ENIGMA Major Depressive Disorder working group. Schmaal, L; Veltman, D J; van Erp, T G M; Sämann, P G; Frodl, T; Jahanshad, N; Loehrer, E; Tiemeier, H; Hofman, A; Niessen, W J; Vernooij, M W; Ikram, M A; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Hoehn, D; Czisch, M; Lagopoulos, J; Hatton, S N; Hickie, I B; Goya-Maldonado, R; Krämer, B; Gruber, O; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Martin, N G; Gillespie, N A; Wright, M J; Hall, G B; MacQueen, G M; Frey, E M; Carballedo, A; van Velzen, L S; van Tol, M J; van der Wee, N J; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Nickson, T; McIntosh, A M; Papmeyer, M; Whalley, H C; Sussmann, J E; Godlewska, B R; Cowen, P J; Fischer, F H; Rose, M; Penninx, B W J H; Thompson, P M; Hibar, D P Molecular psychiatry. 26122586 2016 06;
Development of the human fetal hippocampal formation during early second trimester. Ge, Xinting; Shi, Yonggang; Li, Junning; Zhang, Zhonghe; Lin, Xiangtao; Zhan, Jinfeng; Ge, Haitao; Xu, Junhai; Yu, Qiaowen; Leng, Yuan; Teng, Gaojun; Feng, Lei; Meng, Haiwei; Tang, Yuchun; Zang, Fengchao; Toga, Arthur W; Liu, Shuwei NeuroImage. 26123377 2015 Oct 01;
The KCNE2 K? channel regulatory subunit: Ubiquitous influence, complex pathobiology. Abbott, Geoffrey W Gene. 26123744 2015 Sep 15;
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State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet. Deutsch, Eric W; Sun, Zhi; Campbell, David; Kusebauch, Ulrike; Chu, Caroline S; Mendoza, Luis; Shteynberg, David; Omenn, Gilbert S; Moritz, Robert L Journal of proteome research. 26139527 2015 Sep 4;
Big Data: Astronomical or Genomical? Stephens, Zachary D; Lee, Skylar Y; Faghri, Faraz; Campbell, Roy H; Zhai, Chengxiang; Efron, Miles J; Iyer, Ravishankar; Schatz, Michael C; Sinha, Saurabh; Robinson, Gene E PLoS biology. 26151137 2015 Jul;
Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification. Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Beavis, Ronald C; Nesvizhskii, Alexey I; Deutsch, Eric W Journal of proteome research. 26155816 2015 Sep 4;
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Rich club network analysis shows distinct patterns of disruption in frontotemporal dementia and Alzheimer's disease. Daianu, Madelaine; Jahanshad, Neda; Villalon-Reina, Julio E; Mendez, Mario F; Bartzokis, George; Jimenez, Elvira E; Joshi, Aditi; Barsuglia, Joseph; Thompson, Paul M Mathematics and visualization. 26161050 2014;
Achieving human and machine accessibility of cited data in scholarly publications. Starr, Joan; Castro, Eleni; Crosas, Mercè; Dumontier, Michel; Downs, Robert R; Duerr, Ruth; Haak, Laurel L; Haendel, Melissa; Herman, Ivan; Hodson, Simon; Hourclé, Joe; Kratz, John Ernest; Lin, Jennifer; Nielsen, Lars Holm; Nurnberger, Amy; Proell, Stefan; Rauber, Andreas; Sacchi, Simone; Smith, Arthur; Taylor, Mike; Clark, Tim PeerJ. Computer science. 26167542 2015;
Rsu1 regulates ethanol consumption in Drosophila and humans. Ojelade, Shamsideen A; Jia, Tianye; Rodan, Aylin R; Chenyang, Tao; Kadrmas, Julie L; Cattrell, Anna; Ruggeri, Barbara; Charoen, Pimphen; Lemaitre, Hervé; Banaschewski, Tobias; Büchel, Christian; Bokde, Arun L W; Carvalho, Fabiana; Conrod, Patricia J; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Lubbe, Steven; Martinot, Jean-Luc; Paus, Tomás; Smolka, Michael N; Spanagel, Rainer; O'Reilly, Paul F; Laitinen, Jaana; Veijola, Juha M; Feng, Jianfeng; Desrivières, Sylvane; Jarvelin, Marjo-Riitta; IMAGEN Consortium; Schumann, Gunter; Rothenfluh, Adrian Proceedings of the National Academy of Sciences of the United States of America. 26170296 2015 Jul 28;
ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity. Xu, T; Park, S K; Venable, J D; Wohlschlegel, J A; Diedrich, J K; Cociorva, D; Lu, B; Liao, L; Hewel, J; Han, X; Wong, C C L; Fonslow, B; Delahunty, C; Gao, Y; Shah, H; Yates 3rd, J R Journal of proteomics. 26171723 2015 Nov 03;
The NIH BD2K center for big data in translational genomics. Paten, Benedict; Diekhans, Mark; Druker, Brian J; Friend, Stephen; Guinney, Justin; Gassner, Nadine; Guttman, Mitchell; Kent, W James; Mantey, Patrick; Margolin, Adam A; Massie, Matt; Novak, Adam M; Nothaft, Frank; Pachter, Lior; Patterson, David; Smuga-Otto, Maciej; Stuart, Joshua M; Van't Veer, Laura; Wold, Barbara; Haussler, David Journal of the American Medical Informatics Association : JAMIA. 26174866 2015 Nov;
Callosal Function in Pediatric Traumatic Brain Injury Linked to Disrupted White Matter Integrity. Dennis, Emily L; Ellis, Monica U; Marion, Sarah D; Jin, Yan; Moran, Lisa; Olsen, Alexander; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F The Journal of neuroscience : the official journal of the Society for Neuroscience. 26180196 2015 Jul 15;
Cortisol Reactivity to Stress and Its Association With White Matter Integrity in Adults With Schizophrenia. Nugent, Katie L; Chiappelli, Joshua; Sampath, Hemalatha; Rowland, Laura M; Thangavelu, Kavita; Davis, Beshaun; Du, Xiaoming; Muellerklein, Florian; Daughters, Stacey; Kochunov, Peter; Hong, L Elliot Psychosomatic medicine. 26186431 2015 Sep;
The Alzheimer's Disease Neuroimaging Initiative informatics core: A decade in review. Toga, Arthur W; Crawford, Karen L Alzheimer's & dementia : the journal of the Alzheimer's Association. 26194316 2015 Jul;
Assessing incremental value of biomarkers with multi-phase nested case-control studies. Zhou, Qian M; Zheng, Yingye; Chibnik, Lori B; Karlson, Elizabeth W; Cai, Tianxi Biometrics. 26195245 2015 Dec;
Big biomedical data as the key resource for discovery science. Toga, Arthur W; Foster, Ian; Kesselman, Carl; Madduri, Ravi; Chard, Kyle; Deutsch, Eric W; Price, Nathan D; Glusman, Gustavo; Heavner, Benjamin D; Dinov, Ivo D; Ames, Joseph; Van Horn, John; Kramer, Roger; Hood, Leroy Journal of the American Medical Informatics Association : JAMIA. 26198305 2015 Nov;
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The FHL2 regulation in the transcriptional circuitry of human cancers. Cao, Cyanne Ye; Mok, Simon Wing-Fai; Cheng, Vincent Wing-Sang; Tsui, Stephen Kwok-Wing Gene. 26211626 2015 Nov 01;
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Striatal activity and reduced white matter increase frontal activity in youths with family histories of alcohol and other substance-use disorders performing a go/no-go task. Acheson, Ashley; Tagamets, Malle A; Winkler, Anderson; Rowland, Laura M; Mathias, Charles W; Wright, Susan N; Hong, L Elliot; Kochunov, Peter; Dougherty, Donald M Brain and behavior. 26221573 2015 Jul;
A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes. Gutman, Boris A; Fletcher, P Thomas; Cardoso, M Jorge; Fleishman, Greg M; Lorenzi, Marco; Thompson, Paul M; Ourselin, Sebastien Information processing in medical imaging : proceedings of the ... conference. 26221675 2015;
Heritability of the network architecture of intrinsic brain functional connectivity. Sinclair, Benjamin; Hansell, Narelle K; Blokland, Gabriëlla A M; Martin, Nicholas G; Thompson, Paul M; Breakspear, Michael; de Zubicaray, Greig I; Wright, Margaret J; McMahon, Katie L NeuroImage. 26226088 2015 Nov 01;
Structure and function of cardiac troponin C (TNNC1): Implications for heart failure, cardiomyopathies, and troponin modulating drugs. Li, Monica X; Hwang, Peter M Gene. 26232335 2015 Oct 25;
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A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes. Gutman, Boris; Fletcher, Thomas; Cardoso, M Jorge; Fleishman, Greg; Lorenzi, Marco; Thompson, Paul; Ourselin, Sebastien Information processing in medical imaging : proceedings of the ... conference. 26236122 2015 Jul;
SOCR data dashboard: an integrated big data archive mashing medicare, labor, census and econometric information. Husain, Syed S; Kalinin, Alexandr; Truong, Anh; Dinov, Ivo D Journal of big data. 26236573 2015;
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Boosting brain connectome classification accuracy in Alzheimer's disease using higher-order singular value decomposition. Zhan, Liang; Liu, Yashu; Wang, Yalin; Zhou, Jiayu; Jahanshad, Neda; Ye, Jieping; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) Frontiers in neuroscience. 26257601 2015;
Simulation-Based Design for Wearable Robotic Systems: An Optimization Framework for Enhancing a Standing Long Jump. Ong, Carmichael F; Hicks, Jennifer L; Delp, Scott L IEEE transactions on bio-medical engineering. 26258930 2016 05;
The circular relationship between matrix metalloproteinase-9 and inflammation following myocardial infarction. Deleon-Pennell, Kristine Y; Altara, Raffaele; Yabluchanskiy, Andriy; Modesti, Alessandra; Lindsey, Merry L IUBMB life. 26269290 2015 Aug;
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Tissue Inhibitor of Metalloproteinase-1: Actions beyond Matrix Metalloproteinase Inhibition. Lindsey, Merry L; Yabluchanskiy, Andriy; Ma, Yonggang Cardiology. 26279068 2015;
Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium. van Erp, T G M; Hibar, D P; Rasmussen, J M; Glahn, D C; Pearlson, G D; Andreassen, O A; Agartz, I; Westlye, L T; Haukvik, U K; Dale, A M; Melle, I; Hartberg, C B; Gruber, O; Kraemer, B; Zilles, D; Donohoe, G; Kelly, S; McDonald, C; Morris, D W; Cannon, D M; Corvin, A; Machielsen, M W J; Koenders, L; de Haan, L; Veltman, D J; Satterthwaite, T D; Wolf, D H; Gur, R C; Gur, R E; Potkin, S G; Mathalon, D H; Mueller, B A; Preda, A; Macciardi, F; Ehrlich, S; Walton, E; Hass, J; Calhoun, V D; Bockholt, H J; Sponheim, S R; Shoemaker, J M; van Haren, N E M; Pol, H E H; Ophoff, R A; Kahn, R S; Roiz-Santiañez, R; Crespo-Facorro, B; Wang, L; Alpert, K I; Jönsson, E G; Dimitrova, R; Bois, C; Whalley, H C; McIntosh, A M; Lawrie, S M; Hashimoto, R; Thompson, P M; Turner, J A Molecular psychiatry. 26283641 2016 Apr;
Pivotal role of computers and software in mass spectrometry - SEQUEST and 20 years of tandem MS database searching. Yates 3rd, John R Journal of the American Society for Mass Spectrometry. 26286455 2015 Nov;
The Matchmaker Exchange: a platform for rare disease gene discovery. Philippakis, Anthony A; Azzariti, Danielle R; Beltran, Sergi; Brookes, Anthony J; Brownstein, Catherine A; Brudno, Michael; Brunner, Han G; Buske, Orion J; Carey, Knox; Doll, Cassie; Dumitriu, Sergiu; Dyke, Stephanie O M; den Dunnen, Johan T; Firth, Helen V; Gibbs, Richard A; Girdea, Marta; Gonzalez, Michael; Haendel, Melissa A; Hamosh, Ada; Holm, Ingrid A; Huang, Lijia; Hurles, Matthew E; Hutton, Ben; Krier, Joel B; Misyura, Andriy; Mungall, Christopher J; Paschall, Justin; Paten, Benedict; Robinson, Peter N; Schiettecatte, François; Sobreira, Nara L; Swaminathan, Ganesh J; Taschner, Peter E; Terry, Sharon F; Washington, Nicole L; Züchner, Stephan; Boycott, Kym M; Rehm, Heidi L Human mutation. 26295439 2015 Oct;
Leveraging Interaction between Genetic Variants and Mammographic Findings for Personalized Breast Cancer Diagnosis. Liu, Jie; Wu, Yirong; Ong, Irene; Page, David; Peissig, Peggy; McCarty, Catherine; Onitilo, Adedayo A; Burnside, Elizabeth AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 26306250 2015;
Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets. Lu, Songjian; Lu, Kevin N; Cheng, Shi-Yuan; Hu, Bo; Ma, Xiaojun; Nystrom, Nicholas; Lu, Xinghua PLoS computational biology. 26317392 2015 Aug;
The Global Alzheimer's Association Interactive Network. Toga, Arthur W; Neu, Scott C; Bhatt, Priya; Crawford, Karen L; Ashish, Naveen Alzheimer's & dementia : the journal of the Alzheimer's Association. 26318022 2016 Jan;
Predicting malignancy from mammography findings and image-guided core biopsies. Ferreira, Pedro; Fonseca, Nuno A; Dutra, Inês; Woods, Ryan; Burnside, Elizabeth International journal of data mining and bioinformatics. 26333262 2015;
Cognitive heterogeneity in adult attention deficit/hyperactivity disorder: A systematic analysis of neuropsychological measurements. Mostert, Jeanette C; Onnink, A Marten H; Klein, Marieke; Dammers, Janneke; Harneit, Anais; Schulten, Theresa; van Hulzen, Kimm J E; Kan, Cornelis C; Slaats-Willemse, Dorine; Buitelaar, Jan K; Franke, Barbara; Hoogman, Martine European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. 26336867 2015 Nov;
Large-scale extraction of gene interactions from full-text literature using DeepDive. Mallory, Emily K; Zhang, Ce; Ré, Christopher; Altman, Russ B Bioinformatics (Oxford, England). 26338771 2016 Jan 1;
A predictive modeling approach for cell line-specific long-range regulatory interactions. Roy, Sushmita; Siahpirani, Alireza Fotuhi; Chasman, Deborah; Knaack, Sara; Ay, Ferhat; Stewart, Ron; Wilson, Michael; Sridharan, Rupa Nucleic acids research. 26338778 2015 Oct 15;
Cannabis use in early adolescence: Evidence of amygdala hypersensitivity to signals of threat. Spechler, Philip A; Orr, Catherine A; Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Morton, Aaron; Snowe, Mitchell P; Hudson, Kelsey E; Althoff, Robert R; Higgins, Stephen T; Cattrell, Anna; Flor, Herta; Nees, Frauke; Banaschewski, Tobias; Bokde, Arun L W; Whelan, Robert; Büchel, Christian; Bromberg, Uli; Conrod, Patricia; Frouin, Vincent; Papadopoulos, Dimitri; Gallinat, Jurgen; Heinz, Andreas; Walter, Henrik; Ittermann, Bernd; Gowland, Penny; Paus, Tomá?; Poustka, Luise; Martinot, Jean-Luc; Artiges, Eric; Smolka, Michael N; Schumann, Gunter; Garavan, Hugh; IMAGEN Consortium Developmental cognitive neuroscience. 26347227 2015 Dec;
Fused Lasso Screening Rules via the Monotonicity of Subdifferentials. Wang, Jie; Fan, Wei; Ye, Jieping IEEE transactions on pattern analysis and machine intelligence. 26353128 2015 Sep;
Cardiac myosin-binding protein C (MYBPC3) in cardiac pathophysiology. Carrier, Lucie; Mearini, Giulia; Stathopoulou, Konstantina; Cuello, Friederike Gene. 26358504 2015 Dec 01;
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MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI. Fan, Qiuyun; Witzel, Thomas; Nummenmaa, Aapo; Van Dijk, Koene R A; Van Horn, John D; Drews, Michelle K; Somerville, Leah H; Sheridan, Margaret A; Santillana, Rosario M; Snyder, Jenna; Hedden, Trey; Shaw, Emily E; Hollinshead, Marisa O; Renvall, Ville; Zanzonico, Roberta; Keil, Boris; Cauley, Stephen; Polimeni, Jonathan R; Tisdall, Dylan; Buckner, Randy L; Wedeen, Van J; Wald, Lawrence L; Toga, Arthur W; Rosen, Bruce R NeuroImage. 26364861 2016 Jan 01;
Backward multiple imputation estimation of the conditional lifetime expectancy function with application to censored human longevity data. Kong, Jing; Klein, Barbara E K; Klein, Ronald; Wahba, Grace Proceedings of the National Academy of Sciences of the United States of America. 26371300 2015 Sep 29;
Similar Subgroups Based on Cognitive Performance Parse Heterogeneity in Adults With ADHD and Healthy Controls. Mostert, Jeanette C; Hoogman, Martine; Onnink, A Marten H; van Rooij, Daan; von Rhein, Daniel; van Hulzen, Kimm J E; Dammers, Janneke; Kan, Cornelis C; Buitelaar, Jan K; Norris, David G; Franke, Barbara Journal of attention disorders. 26374770 2018 Feb;
Genes influence the amplitude and timing of brain hemodynamic responses. Shan, Zuyao Y; Vinkhuyzen, Anna A E; Thompson, Paul M; McMahon, Katie L; Blokland, Gabriëlla A M; de Zubicaray, Greig I; Calhoun, Vince; Martin, Nicholas G; Visscher, Peter M; Wright, Margaret J; Reutens, David C NeuroImage. 26375212 2016 Jan 01;
Structure and functional roles of Epac2 (Rapgef4). Sugawara, Kenji; Shibasaki, Tadao; Takahashi, Harumi; Seino, Susumu Gene. 26390815 2016 Jan 10;
p38 MAP kinases in the heart. Yokota, Tomohiro; Wang, Yibin Gene. 26390817 2016 Jan 10;
Tensor-Based Morphometry Reveals Volumetric Deficits in Moderate=Severe Pediatric Traumatic Brain Injury. Dennis, Emily L; Hua, Xue; Villalon-Reina, Julio; Moran, Lisa M; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F Journal of neurotrauma. 26393494 2016 05 01;
KCNE1 and KCNE3: The yin and yang of voltage-gated K(+) channel regulation. Abbott, Geoffrey W Gene. 26410412 2016 Jan 15;
Random Forest Classification of Depression Status Based On Subcortical Brain Morphometry Following Electroconvulsive Therapy. Wade, Benjamin S C; Joshi, Shantanu H; Pirnia, Tara; Leaver, Amber M; Woods, Roger P; Thompson, Paul M; Espinoza, Randall; Narr, Katherine L Proceedings. IEEE International Symposium on Biomedical Imaging. 26413200 2015 Apr;
FEATURE SELECTION IMPROVES THE ACCURACY OF CLASSIFYING ALZHEIMER DISEASE USING DIFFUSION TENSOR IMAGES. Demirhan, Ay?e; Nir, Talia M; Zavaliangos-Petropulu, Artemis; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M; Jahanshad, Neda; Alzheimer?s Disease Neuroimaging Initiative (ADNI) Proceedings. IEEE International Symposium on Biomedical Imaging. 26413201 2015 Apr;
Boosting Classification Accuracy of Diffusion MRI Derived Brain Networks for the Subtypes of Mild Cognitive Impairment Using Higher Order Singular Value Decomposition. Zhan, L; Liu, Y; Zhou, J; Ye, J; Thompson, P M Proceedings. IEEE International Symposium on Biomedical Imaging. 26413202 2015 Apr;
AUTOMATED MULTI-ATLAS LABELING OF THE FORNIX AND ITS INTEGRITY IN ALZHEIMER'S DISEASE. Jin, Yan; Shi, Yonggang; Zhan, Liang; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative (ADNI) Proceedings. IEEE International Symposium on Biomedical Imaging. 26413203 2015 Apr;
HERITABILITY OF BRAIN NETWORK TOPOLOGY IN 853 TWINS AND SIBLINGS. Zhan, L; Jahanshad, N; Faskowitz, J; Zhu, D; Prasad, G; Martin, N G; de Zubicaray, G I; McMahon, K L; Wright, M J; Thompson, P M Proceedings. IEEE International Symposium on Biomedical Imaging. 26413204 2015 Apr;
SPECTRAL GRAPH THEORY AND GRAPH ENERGY METRICS SHOW EVIDENCE FOR THE ALZHEIMER'S DISEASE DISCONNECTION SYNDROME IN APOE-4 RISK GENE CARRIERS. Daianu, Madelaine; Mezher, Adam; Jahanshad, Neda; Hibar, Derrek P; Nir, Talia M; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 26413205 2015 Apr;
WHITE MATTER INTEGRITY IN TRAUMATIC BRAIN INJURY: EFFECTS OF PERMISSIBLE FIBER TURNING ANGLE. Dennis, Emily L; Jin, Yan; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 26413206 2015 Apr;
MAPPING ABNORMAL SUBCORTICAL BRAIN MORPHOMETRY IN AN ELDERLY HIV+ COHORT. Wade, Benjamin S C; Valcour, Victor G; Wendelken-Riegelhaupt, Lauren; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Wang, Yalin; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 26413207 2015 Apr;
Information-Theoretic Characterization of Blood Panel Predictors for Brain Atrophy and Cognitive Decline in the Elderly. Madsen, Sarah K; Ver Steeg, Greg; Mezher, Adam; Jahanshad, Neda; Nir, Talia M; Hua, Xue; Gutman, Boris A; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative (ADNI) Proceedings. IEEE International Symposium on Biomedical Imaging. 26413208 2015 Apr;
Detecting Genetic Risk Factors for Alzheimer's Disease in Whole Genome Sequence Data via Lasso Screening. Yang, Tao; Wang, Jie; Sun, Qian; Hibar, Derrek P; Jahanshad, Neda; Liu, Li; Wang, Yalin; Zhan, Liang; Thompson, Paul M; Ye, Jieping Proceedings. IEEE International Symposium on Biomedical Imaging. 26413209 2015 Apr;
GENETIC ANALYSIS OF STRUCTURAL BRAIN CONNECTIVITY USING DICCCOL MODELS OF DIFFUSION MRI IN 522 TWINS. Zhu, Dajiang; Zhan, Liang; Faskowitz, Joshua; Daianu, Madelaine; Jahanshad, Neda; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 26413210 2015 Apr;
Medial Demons Registration Localizes The Degree of Genetic Influence Over Subcortical Shape Variability: An N= 1480 Meta-Analysis. Gutman, Boris A; Jahanshad, Neda; Ching, Christopher R K; Wang, Yalin; Kochunov, Peter V; Nichols, Thomas E; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 26413211 2015 Apr;
Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis. Hu, Dong; Gur, Mert; Zhou, Zhuan; Gamper, Armin; Hung, Mien-Chie; Fujita, Naoya; Lan, Li; Bahar, Ivet; Wan, Yong Nature communications. 26420673 2015;
Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism. Papale, Ligia A; Zhang, Qi; Li, Sisi; Chen, Kailei; Kele?, Sündüz; Alisch, Reid S Human molecular genetics. 26423458 2015 Dec 15;
Endothelial nitric oxide synthase: From biochemistry and gene structure to clinical implications of NOS3 polymorphisms. Oliveira-Paula, Gustavo H; Lacchini, Riccardo; Tanus-Santos, Jose E Gene. 26428312 2016 Jan 10;
Optimal mass transport for shape matching and comparison. Su, Zhengyu; Wang, Yalin; Shi, Rui; Zeng, Wei; Sun, Jian; Luo, Feng; Gu, Xianfeng IEEE transactions on pattern analysis and machine intelligence. 26440265 2015 Nov;
Structural Neuroimaging Genetics Interactions in Alzheimer's Disease. Moon, Seok Woo; Dinov, Ivo D; Kim, Jaebum; Zamanyan, Alen; Hobel, Sam; Thompson, Paul M; Toga, Arthur W Journal of Alzheimer's disease : JAD. 26444770 2015;
Risk of Type 2 Diabetes Is Lower in US Adults Taking Chromium-Containing Supplements. McIver, David J; Grizales, Ana Maria; Brownstein, John S; Goldfine, Allison B The Journal of nutrition. 26446484 2015 Dec;
Age exacerbates HIV-associated white matter abnormalities. Seider, Talia R; Gongvatana, Assawin; Woods, Adam J; Chen, Huaihou; Porges, Eric C; Cummings, Tiffany; Correia, Stephen; Tashima, Karen; Cohen, Ronald A Journal of neurovirology. 26446690 2016 Apr;
HFE gene: Structure, function, mutations, and associated iron abnormalities. Barton, James C; Edwards, Corwin Q; Acton, Ronald T Gene. 26456104 2015 Dec 15;
Neurocognitive Deficits in Attention-Deficit/Hyperactivity Disorder With and Without Comorbid Oppositional Defiant Disorder. Noordermeer, Siri D S; Luman, Marjolein; Buitelaar, Jan K; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Faraone, Stephen V; Heslenfeld, Dirk J; Oosterlaan, Jaap Journal of attention disorders. 26486602 2015 Oct 20;
A comprehensive Candida albicans PeptideAtlas build enables deep proteome coverage. Vialas, Vital; Sun, Zhi; Reales-Calderón, Jose A; Hernáez, María L; Casas, Vanessa; Carrascal, Montserrat; Abián, Joaquín; Monteoliva, Lucía; Deutsch, Eric W; Moritz, Robert L; Gil, Concha Journal of proteomics. 26493587 2016 Jan 10;
The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects. Kochunov, Peter; Thompson, Paul M; Winkler, Anderson; Morrissey, Mary; Fu, Mao; Coyle, Thomas R; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Gaudiot, Christopher; Sampath, Hemalatha; Eskandar, George; Jahanshad, Neda; Patel, Binish; Rowland, Laura; Nichols, Thomas E; O'Connell, Jeffrey R; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L Elliot NeuroImage. 26499807 2016 Jan 15;
Computational discovery of transcription factors associated with drug response. Hanson, C; Cairns, J; Wang, L; Sinha, S The pharmacogenomics journal. 26503816 2016 Nov;
Transcriptomic and genetic studies identify NFAT5 as a candidate gene for cocaine dependence. Fernàndez-Castillo, N; Cabana-Domínguez, J; Soriano, J; Sànchez-Mora, C; Roncero, C; Grau-López, L; Ros-Cucurull, E; Daigre, C; van Donkelaar, M M J; Franke, B; Casas, M; Ribasés, M; Cormand, B Translational psychiatry. 26506053 2015;
Comparing Mammography Abnormality Features to Genetic Variants in the Prediction of Breast Cancer in Women Recommended for Breast Biopsy. Burnside, Elizabeth S; Liu, Jie; Wu, Yirong; Onitilo, Adedayo A; McCarty, Catherine A; Page, C David; Peissig, Peggy L; Trentham-Dietz, Amy; Kitchner, Terrie; Fan, Jun; Yuan, Ming Academic radiology. 26514439 2016 Jan;
An advanced white matter tract analysis in frontotemporal dementia and early-onset Alzheimer's disease. Daianu, Madelaine; Mendez, Mario F; Baboyan, Vatche G; Jin, Yan; Melrose, Rebecca J; Jimenez, Elvira E; Thompson, Paul M Brain imaging and behavior. 26515192 2016 Dec;
Global Data Sharing in Alzheimer Disease Research. Ashish, Naveen; Bhatt, Priya; Toga, Arthur W Alzheimer disease and associated disorders. 26523713 2016 Apr-Jun;
TNNI1, TNNI2 and TNNI3: Evolution, regulation, and protein structure-function relationships. Sheng, Juan-Juan; Jin, Jian-Ping Gene. 26526134 2016 Jan 15;
Heritability of complex white matter diffusion traits assessed in a population isolate. Kochunov, Peter; Fu, Mao; Nugent, Katie; Wright, Susan N; Du, Xiaoming; Muellerklein, Florian; Morrissey, Mary; Eskandar, George; Shukla, Dinesh K; Jahanshad, Neda; Thompson, Paul M; Patel, Binish; Postolache, Teodor T; Strauss, Kevin A; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L Elliot Human brain mapping. 26538488 2016 Feb;
iShadow: Design of a Wearable, Real-Time Mobile Gaze Tracker. Mayberry, Addison; Hu, Pan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, Deepak MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. 26539565 2014 Jun;
Visualization of Time-Series Sensor Data to Inform the Design of Just-In-Time Adaptive Stress Interventions. Sharmin, Moushumi; Raij, Andrew; Epstien, David; Nahum-Shani, Inbal; Beck, J Gayle; Vhaduri, Sudip; Preston, Kenzie; Kumar, Santosh Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 26539566 2015 Sep;
Automated-immunosensor with centrifugal fluid valves for salivary cortisol measurement. Yamaguchi, Masaki; Katagata, Hiroki; Tezuka, Yuki; Niwa, Daisuke; Shetty, Vivek Sensing and Bio-Sensing Research. 26543818 2014 Aug;
Stress: Towards a Gold Standard for Continuous Stress Assessment in the Mobile Environment. Hovsepian, Karen; al'Absi, Mustafa; Ertin, Emre; Kamarck, Thomas; Nakajima, Motohiro; Kumar, Santosh Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 26543926 2015 Sep;
puffMarker: A Multi-Sensor Approach for Pinpointing the Timing of First Lapse in Smoking Cessation. Saleheen, Nazir; Ali, Amin Ahsan; Hossain, Syed Monowar; Sarker, Hillol; Chatterjee, Soujanya; Marlin, Benjamin; Ertin, Emre; al'Absi, Mustafa; Kumar, Santosh Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 26543927 2015 Sep;
MRI-based brain atrophy rates in ADNI phase 2: acceleration and enrichment considerations for clinical trials. Hua, Xue; Ching, Christopher R K; Mezher, Adam; Gutman, Boris A; Hibar, Derrek P; Bhatt, Priya; Leow, Alex D; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative Neurobiology of aging. 26545631 2016 Jan;
Jagged1 (JAG1): Structure, expression, and disease associations. Grochowski, Christopher M; Loomes, Kathleen M; Spinner, Nancy B Gene. 26548814 2016 Jan 15;
Center of excellence for mobile sensor data-to-knowledge (MD2K). Kumar, Santosh; Abowd, Gregory D; Abraham, William T; al'Absi, Mustafa; Beck, J Gayle; Chau, Duen Horng; Condie, Tyson; Conroy, David E; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Lam, Cho; Marlin, Benjamin; Marsh, Clay B; Murphy, Susan A; Nahum-Shani, Inbal; Patrick, Kevin; Rehg, James M; Sharmin, Moushumi; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, David W Journal of the American Medical Informatics Association : JAMIA. 26555017 2015 Nov;
Entorhinal Cortex Thickness across the Human Lifespan. Hasan, Khader M; Mwangi, Benson; Cao, Bo; Keser, Zafer; Tustison, Nicholas J; Kochunov, Peter; Frye, Richard E; Savatic, Mirjana; Soares, Jair Journal of neuroimaging : official journal of the American Society of Neuroimaging. 26565394 2016 May;
Sharing the wealth: Neuroimaging data repositories. Eickhoff, Simon; Nichols, Thomas E; Van Horn, John D; Turner, Jessica A NeuroImage. 26574120 2016 Jan 1;
Childhood abuse and deprivation are associated with distinct sex-dependent differences in brain morphology. Everaerd, Daphne; Klumpers, Floris; Zwiers, Marcel; Guadalupe, Tulio; Franke, Barbara; van Oostrom, Iris; Schene, Aart; Fernández, Guillén; Tendolkar, Indira Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 26576924 2016 Jun;
Cracking the brain's genetic code. Thompson, Paul M Proceedings of the National Academy of Sciences of the United States of America. 26582794 2015 Dec 15;
The UCSC Genome Browser database: 2016 update. Speir, Matthew L; Zweig, Ann S; Rosenbloom, Kate R; Raney, Brian J; Paten, Benedict; Nejad, Parisa; Lee, Brian T; Learned, Katrina; Karolchik, Donna; Hinrichs, Angie S; Heitner, Steve; Harte, Rachel A; Haeussler, Maximilian; Guruvadoo, Luvina; Fujita, Pauline A; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P; Haussler, David; Kuhn, Robert M; Kent, W James Nucleic acids research. 26590259 2016 Jan 4;
Genome-wide alterations in hippocampal 5-hydroxymethylcytosine links plasticity genes to acute stress. Li, Sisi; Papale, Ligia A; Zhang, Qi; Madrid, Andy; Chen, Li; Chopra, Pankaj; Kele?, Sündüz; Jin, Peng; Alisch, Reid S Neurobiology of disease. 26598390 2016 Feb;
Binary Classifier Calibration Using a Bayesian Non-Parametric Approach. Naeini, Mahdi Pakdaman; Cooper, Gregory F; Hauskrecht, Milos Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. 26613068 2015;
Using computer-extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage. Burnside, Elizabeth S; Drukker, Karen; Li, Hui; Bonaccio, Ermelinda; Zuley, Margarita; Ganott, Marie; Net, Jose M; Sutton, Elizabeth J; Brandt, Kathleen R; Whitman, Gary J; Conzen, Suzanne D; Lan, Li; Ji, Yuan; Zhu, Yitan; Jaffe, Carl C; Huang, Erich P; Freymann, John B; Kirby, Justin S; Morris, Elizabeth A; Giger, Maryellen L Cancer. 26619259 2016 Mar 01;
Saul: Towards Declarative Learning Based Programming. Kordjamshidi, Parisa; Roth, Dan; Wu, Hao IJCAI : proceedings of the conference. 26635465 2015 Jul;
Mapping abnormal subcortical brain morphometry in an elderly HIV+ cohort. Wade, Benjamin S C; Valcour, Victor G; Wendelken-Riegelhaupt, Lauren; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Gutman, Boris A; Thompson, Paul M NeuroImage. Clinical. 26640768 2015;
Algebraic connectivity of brain networks shows patterns of segregation leading to reduced network robustness in Alzheimer's disease. Daianu, Madelaine; Jahanshad, Neda; Nir, Talia M; Leonardo, Cassandra D; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matthew A; Thompson, Paul M Computational diffusion MRI : MICCAI Workshop, Boston, MA, USA, September 2014. CDMRI (Workshop) (6th : 2014 : Boston, Mass.). 26640830 2014;
Characterizing Smoking and Drinking Abstinence from Social Media. Tamersoy, Acar; De Choudhury, Munmun; Chau, Duen Horng HT ... : the proceedings of the ... ACM Conference on Hypertext and Social Media. ACM Conference on Hypertext and Social Media. 26640831 2015 Sep;
Cerebral Amyloid and Hypertension are Independently Associated with White Matter Lesions in Elderly. Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; Alzheimer?s Disease Neuroimaging Initiative Frontiers in aging neuroscience. 26648866 2015;
Building health behavior models to guide the development of just-in-time adaptive interventions: A pragmatic framework. Nahum-Shani, Inbal; Hekler, Eric B; Spruijt-Metz, Donna Health psychology : official journal of the Division of Health Psychology, American Psychological Association. 26651462 2015 Dec;
Microrandomized trials: An experimental design for developing just-in-time adaptive interventions. Klasnja, Predrag; Hekler, Eric B; Shiffman, Saul; Boruvka, Audrey; Almirall, Daniel; Tewari, Ambuj; Murphy, Susan A Health psychology : official journal of the Division of Health Psychology, American Psychological Association. 26651463 2015 Dec;
The Reactome pathway Knowledgebase. Fabregat, Antonio; Sidiropoulos, Konstantinos; Garapati, Phani; Gillespie, Marc; Hausmann, Kerstin; Haw, Robin; Jassal, Bijay; Jupe, Steven; Korninger, Florian; McKay, Sheldon; Matthews, Lisa; May, Bruce; Milacic, Marija; Rothfels, Karen; Shamovsky, Veronica; Webber, Marissa; Weiser, Joel; Williams, Mark; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, Peter Nucleic acids research. 26656494 2016 Jan 4;
ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide. Thompson, Paul M; Andreassen, Ole A; Arias-Vasquez, Alejandro; Bearden, Carrie E; Boedhoe, Premika S; Brouwer, Rachel M; Buckner, Randy L; Buitelaar, Jan K; Bulayeva, Kazima B; Cannon, Dara M; Cohen, Ronald A; Conrod, Patricia J; Dale, Anders M; Deary, Ian J; Dennis, Emily L; de Reus, Marcel A; Desrivieres, Sylvane; Dima, Danai; Donohoe, Gary; Fisher, Simon E; Fouche, Jean-Paul; Francks, Clyde; Frangou, Sophia; Franke, Barbara; Ganjgahi, Habib; Garavan, Hugh; Glahn, David C; Grabe, Hans J; Guadalupe, Tulio; Gutman, Boris A; Hashimoto, Ryota; Hibar, Derrek P; Holland, Dominic; Hoogman, Martine; Pol, Hilleke E Hulshoff; Hosten, Norbert; Jahanshad, Neda; Kelly, Sinead; Kochunov, Peter; Kremen, William S; Lee, Phil H; Mackey, Scott; Martin, Nicholas G; Mazoyer, Bernard; McDonald, Colm; Medland, Sarah E; Morey, Rajendra A; Nichols, Thomas E; Paus, Tomas; Pausova, Zdenka; Schmaal, Lianne; Schumann, Gunter; Shen, Li; Sisodiya, Sanjay M; Smit, Dirk J A; Smoller, Jordan W; Stein, Dan J; Stein, Jason L; Toro, Roberto; Turner, Jessica A; van den Heuvel, Martijn P; van den Heuvel, Odile L; van Erp, Theo G M; van Rooij, Daan; Veltman, Dick J; Walter, Henrik; Wang, Yalin; Wardlaw, Joanna M; Whelan, Christopher D; Wright, Margaret J; Ye, Jieping; ENIGMA Consortium NeuroImage. 26658930 ;
Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves. Buffon, Giseli; Blasi, Édina A R; Adamski, Janete M; Ferla, Noeli J; Berger, Markus; Santi, Lucélia; Lavallée-Adam, Mathieu; Yates 3rd, John R; Beys-da-Silva, Walter O; Sperotto, Raul A Journal of proteome research. 26667653 2016 Feb 05;
Disrupted rich club network in behavioral variant frontotemporal dementia and early-onset Alzheimer's disease. Daianu, Madelaine; Mezher, Adam; Mendez, Mario F; Jahanshad, Neda; Jimenez, Elvira E; Thompson, Paul M Human brain mapping. 26678225 2016 Mar;
Voxel-based morphometry analysis reveals frontal brain differences in participants with ADHD and their unaffected siblings. Bralten, Janita; Greven, Corina U; Franke, Barbara; Mennes, Maarten; Zwiers, Marcel P; Rommelse, Nanda N J; Hartman, Catharina; van der Meer, Dennis; O'Dwyer, Laurence; Oosterlaan, Jaap; Hoekstra, Pieter J; Heslenfeld, Dirk; Arias-Vasquez, Alejandro; Buitelaar, Jan K Journal of psychiatry & neuroscience : JPN. 26679925 2016 Jun;
Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses. Andres-Terre, Marta; McGuire, Helen M; Pouliot, Yannick; Bongen, Erika; Sweeney, Timothy E; Tato, Cristina M; Khatri, Purvesh Immunity. 26682989 2015 Dec 15;
Multi-Shell Hybrid Diffusion Imaging (HYDI) at 7 Tesla in TgF344-AD Transgenic Alzheimer Rats. Daianu, Madelaine; Jacobs, Russell E; Weitz, Tara M; Town, Terrence C; Thompson, Paul M PloS one. 26683657 2015;
Protein kinase A catalytic subunit isoform PRKACA; History, function and physiology. Turnham, Rigney E; Scott, John D Gene. 26687711 2016 Feb 15;
RisQ: Recognizing Smoking Gestures with Inertial Sensors on a Wristband. Parate, Abhinav; Chiu, Meng-Chieh; Chadowitz, Chaniel; Ganesan, Deepak; Kalogerakis, Evangelos MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. 26688835 2014 Jun;
A predictive enrichment procedure to identify potential responders to a new therapy for randomized, comparative controlled clinical studies. Li, Junlong; Zhao, Lihui; Tian, Lu; Cai, Tianxi; Claggett, Brian; Callegaro, Andrea; Dizier, Benjamin; Spiessens, Bart; Ulloa-Montoya, Fernando; Wei, Lee-Jen Biometrics. 26689167 2016 Sep;
Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures. Prilutsky, Daria; Kho, Alvin T; Palmer, Nathan P; Bhakar, Asha L; Smedemark-Margulies, Niklas; Kong, Sek Won; Margulies, David M; Bear, Mark F; Kohane, Isaac S Molecular autism 26697163 2015
The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine. Hesselager, Marianne O; Codrea, Marius C; Sun, Zhi; Deutsch, Eric W; Bennike, Tue B; Stensballe, Allan; Bundgaard, Louise; Moritz, Robert L; Bendixen, Emøke Proteomics. 26699206 2016 Feb;
Mining Quality Phrases from Massive Text Corpora. Liu, Jialu; Shang, Jingbo; Wang, Chi; Ren, Xiang; Han, Jiawei Proceedings. ACM-Sigmod International Conference on Management of Data. 26705375 2015 May-Jun;
On the Discovery of Evolving Truth. Li, Yaliang; Li, Qi; Gao, Jing; Su, Lu; Zhao, Bo; Fan, Wei; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26705502 2015 Aug;
ClusType: Effective Entity Recognition and Typing by Relation Phrase-Based Clustering. Ren, Xiang; El-Kishky, Ahmed; Wang, Chi; Tao, Fangbo; Voss, Clare R; Ji, Heng; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26705503 2015 Aug;
Incorporating World Knowledge to Document Clustering via Heterogeneous Information Networks. Wang, Chenguang; Song, Yangqiu; El-Kishky, Ahmed; Roth, Dan; Zhang, Ming; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26705504 2015 Aug;
Towards Interactive Construction of Topical Hierarchy: A Recursive Tensor Decomposition Approach. Wang, Chi; Liu, Xueqing; Song, Yanglei; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26705505 2015 Aug;
Assembler: Efficient Discovery of Spatial Co-evolving Patterns in Massive Geo-sensory Data. Zhang, Chao; Zheng, Yu; Ma, Xiuli; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26705506 2015 Aug;
Modeling Truth Existence in Truth Discovery. Zhi, Shi; Zhao, Bo; Tong, Wenzhu; Gao, Jing; Yu, Dian; Ji, Heng; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26705507 2015 Aug;
Automatic Entity Recognition and Typing from Massive Text Corpora: A Phrase and Network Mining Approach. Ren, Xiang; El-Kishky, Ahmed; Wang, Chi; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26705508 2015 Aug;
Graph Regularized Meta-path Based Transductive Regression in Heterogeneous Information Network. Wan, Mengting; Ouyang, Yunbo; Kaplan, Lance; Han, Jiawei Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. 26705510 2015 Apr-May;
Leveraging Pattern Semantics for Extracting Entities in Enterprises. Tao, Fangbo; Zhao, Bo; Fuxman, Ariel; Li, Yang; Han, Jiawei Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 26705540 2015 May;
Robust Classification of Information Networks by Consistent Graph Learning. Zhi, Shi; Han, Jiawei; Gu, Quanquan Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). 26705541 2015 Sep;
Sample size calculations for micro-randomized trials in mHealth. Liao, Peng; Klasnja, Predrag; Tewari, Ambuj; Murphy, Susan A Statistics in medicine. 26707831 2016 05 30;
TOPTRAC: Topical Trajectory Pattern Mining. Kim, Younghoon; Han, Jiawei; Yuan, Cangzhou KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26709365 2015 Aug;
Fast Inbound Top-K Query for Random Walk with Restart. Zhang, Chao; Jiang, Shan; Chen, Yucheng; Sun, Yidan; Han, Jiawei Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). 26709392 2015 Sep;
Debiasing Crowdsourced Batches. Zhuang, Honglei; Parameswaran, Aditya; Roth, Dan; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 26713175 2015 Aug;
Comment: Getting a handle on HAND in the era of cART. Cohen, Ronald A; Navia, Bradford Neurology. 26718565 2016 Jan 26;
Matrix metalloproteinases as input and output signals for post-myocardial infarction remodeling. Lindsey, Merry L; Iyer, Rugmani Padmanabhan; Jung, Mira; DeLeon-Pennell, Kristine Y; Ma, Yonggang Journal of molecular and cellular cardiology. 26721597 2016 Feb;
Titian: Data Provenance Support in Spark. Interlandi, Matteo; Shah, Kshitij; Tetali, Sai Deep; Gulzar, Muhammad Ali; Yoo, Seunghyun; Kim, Miryung; Millstein, Todd; Condie, Tyson Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 26726305 2015 Nov;
Conditional Random Fields for Morphological Analysis of Wireless ECG Signals. Natarajan, Annamalai; Gaiser, Edward; Angarita, Gustavo; Malison, Robert; Ganesan, Deepak; Marlin, Benjamin ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. 26726321 2014;
LRP5: A novel anti-inflammatory macrophage marker that positively regulates migration and phagocytosis. Ma, Yonggang Journal of molecular and cellular cardiology. 26739212 2016 Feb;
The crossroads of inflammation, fibrosis, and arrhythmia following myocardial infarction. Francis Stuart, Samantha D; De Jesus, Nicole M; Lindsey, Merry L; Ripplinger, Crystal M Journal of molecular and cellular cardiology. 26739214 2016 Feb;
UCSC Data Integrator and Variant Annotation Integrator. Hinrichs, Angie S; Raney, Brian J; Speir, Matthew L; Rhead, Brooke; Casper, Jonathan; Karolchik, Donna; Kuhn, Robert M; Rosenbloom, Kate R; Zweig, Ann S; Haussler, David; Kent, W James Bioinformatics (Oxford, England). 26740527 2016 May 01;
The Budding Yeast Ubiquitin Protease Ubp7 Is a Novel Component Involved in S Phase Progression. Böhm, Stefanie; Szakal, Barnabas; Herken, Benjamin W; Sullivan, Meghan R; Mihalevic, Michael J; Kabbinavar, Faiz F; Branzei, Dana; Clark, Nathan L; Bernstein, Kara A The Journal of biological chemistry. 26740628 2016 Feb 26;
OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data. Leng, Ning; Choi, Jeea; Chu, Li-Fang; Thomson, James A; Kendziorski, Christina; Stewart, Ron Bioinformatics (Oxford, England). 26743507 2016 May 01;
Head Motion and Inattention/Hyperactivity Share Common Genetic Influences: Implications for fMRI Studies of ADHD. Couvy-Duchesne, Baptiste; Ebejer, Jane L; Gillespie, Nathan A; Duffy, David L; Hickie, Ian B; Thompson, Paul M; Martin, Nicholas G; de Zubicaray, Greig I; McMahon, Katie L; Medland, Sarah E; Wright, Margaret J PloS one. 26745144 2016;
Heritability and reliability of automatically segmented human hippocampal formation subregions. Whelan, Christopher D; Hibar, Derrek P; van Velzen, Laura S; Zannas, Anthony S; Carrillo-Roa, Tania; McMahon, Katie; Prasad, Gautam; Kelly, Sinéad; Faskowitz, Joshua; deZubiracay, Greig; Iglesias, Juan E; van Erp, Theo G M; Frodl, Thomas; Martin, Nicholas G; Wright, Margaret J; Jahanshad, Neda; Schmaal, Lianne; Sämann, Philipp G; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative NeuroImage. 26747746 2016 Mar;
May the fibrosis be with you: Is discoidin domain receptor 2 the receptor we have been looking for? DeLeon-Pennell, Kristine Y Journal of molecular and cellular cardiology. 26772530 2016 Feb;
TNNT1, TNNT2, and TNNT3: Isoform genes, regulation, and structure-function relationships. Wei, Bin; Jin, J-P Gene. 26774798 2016 May 10;
REPRODUCIBLE AND SHAREABLE QUANTIFICATIONS OF PATHOGENICITY. Manrai, Arjun K; Wang, Brice L; Patel, Chirag J; Kohane, Isaac S Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 26776189 2016;
SeeDB: Efficient Data-Driven Visualization Recommendations to Support Visual Analytics. Vartak, Manasi; Rahman, Sajjadur; Madden, Samuel; Parameswaran, Aditya; Polyzotis, Neoklis Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 26779379 2015 Sep;
Rapid Sampling for Visualizations with Ordering Guarantees. Kim, Albert; Blais, Eric; Parameswaran, Aditya; Indyk, Piotr; Madden, Sam; Rubinfeld, Ronitt Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 26779380 2015 Jan;
Abnormal asymmetries in subcortical brain volume in schizophrenia. Okada, N; Fukunaga, M; Yamashita, F; Koshiyama, D; Yamamori, H; Ohi, K; Yasuda, Y; Fujimoto, M; Watanabe, Y; Yahata, N; Nemoto, K; Hibar, D P; van Erp, T G M; Fujino, H; Isobe, M; Isomura, S; Natsubori, T; Narita, H; Hashimoto, N; Miyata, J; Koike, S; Takahashi, T; Yamasue, H; Matsuo, K; Onitsuka, T; Iidaka, T; Kawasaki, Y; Yoshimura, R; Watanabe, Y; Suzuki, M; Turner, J A; Takeda, M; Thompson, P M; Ozaki, N; Kasai, K; Hashimoto, R Molecular psychiatry. 26782053 2016 10;
Quantifying prion disease penetrance using large population control cohorts. Minikel, Eric Vallabh; Vallabh, Sonia M; Lek, Monkol; Estrada, Karol; Samocha, Kaitlin E; Sathirapongsasuti, J Fah; McLean, Cory Y; Tung, Joyce Y; Yu, Linda P C; Gambetti, Pierluigi; Blevins, Janis; Zhang, Shulin; Cohen, Yvonne; Chen, Wei; Yamada, Masahito; Hamaguchi, Tsuyoshi; Sanjo, Nobuo; Mizusawa, Hidehiro; Nakamura, Yosikazu; Kitamoto, Tetsuyuki; Collins, Steven J; Boyd, Alison; Will, Robert G; Knight, Richard; Ponto, Claudia; Zerr, Inga; Kraus, Theo F J; Eigenbrod, Sabina; Giese, Armin; Calero, Miguel; de Pedro-Cuesta, Jesús; Haïk, Stéphane; Laplanche, Jean-Louis; Bouaziz-Amar, Elodie; Brandel, Jean-Philippe; Capellari, Sabina; Parchi, Piero; Poleggi, Anna; Ladogana, Anna; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Marshall, Jamie L; Boehnke, Michael; Laakso, Markku; Mohlke, Karen L; Kähler, Anna; Chambert, Kimberly; McCarroll, Steven; Sullivan, Patrick F; Hultman, Christina M; Purcell, Shaun M; Sklar, Pamela; van der Lee, Sven J; Rozemuller, Annemieke; Jansen, Casper; Hofman, Albert; Kraaij, Robert; van Rooij, Jeroen G J; Ikram, M Arfan; Uitterlinden, André G; van Duijn, Cornelia M; Exome Aggregation Consortium (ExAC); Daly, Mark J; MacArthur, Daniel G Science translational medicine. 26791950 2016 Jan 20;
The GAAIN Entity Mapper: An Active-Learning System for Medical Data Mapping. Ashish, Naveen; Dewan, Peehoo; Toga, Arthur W Frontiers in neuroinformatics. 26793094 2015;
Randomised trials for the Fitbit generation. Dempsey, Walter; Liao, Peng; Klasnja, Pedja; Nahum-Shani, Inbal; Murphy, Susan A Significance (Oxford, England). 26807137 2015 Dec 1;
Leveraging Genomic Annotations and Pleiotropic Enrichment for Improved Replication Rates in Schizophrenia GWAS. Wang, Yunpeng; Thompson, Wesley K; Schork, Andrew J; Holland, Dominic; Chen, Chi-Hua; Bettella, Francesco; Desikan, Rahul S; Li, Wen; Witoelar, Aree; Zuber, Verena; Devor, Anna; Bipolar Disorder and Schizophrenia Working Group of the Psychiatric Genomics Consortium; Enhancing Neuro Imaging Genetics through Meta Analysis Consortium; Nöthen, Markus M; Rietschel, Marcella; Chen, Qiang; Werge, Thomas; Cichon, Sven; Weinberger, Daniel R; Djurovic, Srdjan; O'Donovan, Michael; Visscher, Peter M; Andreassen, Ole A; Dale, Anders M PLoS genetics. 26808560 2016 Jan;
REEF: Retainable Evaluator Execution Framework. Weimer, Markus; Chen, Yingda; Chun, Byung-Gon; Condie, Tyson; Curino, Carlo; Douglas, Chris; Lee, Yunseong; Majestro, Tony; Malkhi, Dahlia; Matusevych, Sergiy; Myers, Brandon; Narayanamurthy, Shravan; Ramakrishnan, Raghu; Rao, Sriram; Sears, Russell; Sezgin, Beysim; Wang, Julia Proceedings. ACM-Sigmod International Conference on Management of Data. 26819493 2015 May-Jun;
Genetic imaging consortium for addiction medicine: From neuroimaging to genes. Mackey, Scott; Kan, Kees-Jan; Chaarani, Bader; Alia-Klein, Nelly; Batalla, Albert; Brooks, Samantha; Cousijn, Janna; Dagher, Alain; de Ruiter, Michiel; Desrivieres, Sylvane; Feldstein Ewing, Sarah W; Goldstein, Rita Z; Goudriaan, Anna E; Heitzeg, Mary M; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Morales, Angelica M; Paulus, Martin P; Paus, Tomas; Pearlson, Godfrey; Schluter, Renée; Momenan, Reza; Schmaal, Lianne; Schumann, Gunter; Sinha, Rajita; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot A; Solowij, Nadia; Tapert, Susan; Uhlmann, Anne; Veltman, Dick; van Holst, Ruth; Walter, Henrik; Wright, Margaret J; Yucel, Murat; Yurgelun-Todd, Deborah; Hibar, Derrek P; Jahanshad, Neda; Thompson, Paul M; Glahn, David C; Garavan, Hugh; Conrod, Patricia Progress in brain research. 26822360 2016;
Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma. Ceccarelli, Michele; Barthel, Floris P; Malta, Tathiane M; Sabedot, Thais S; Salama, Sofie R; Murray, Bradley A; Morozova, Olena; Newton, Yulia; Radenbaugh, Amie; Pagnotta, Stefano M; Anjum, Samreen; Wang, Jiguang; Manyam, Ganiraju; Zoppoli, Pietro; Ling, Shiyun; Rao, Arjun A; Grifford, Mia; Cherniack, Andrew D; Zhang, Hailei; Poisson, Laila; Carlotti Jr, Carlos Gilberto; Tirapelli, Daniela Pretti da Cunha; Rao, Arvind; Mikkelsen, Tom; Lau, Ching C; Yung, W K Alfred; Rabadan, Raul; Huse, Jason; Brat, Daniel J; Lehman, Norman L; Barnholtz-Sloan, Jill S; Zheng, Siyuan; Hess, Kenneth; Rao, Ganesh; Meyerson, Matthew; Beroukhim, Rameen; Cooper, Lee; Akbani, Rehan; Wrensch, Margaret; Haussler, David; Aldape, Kenneth D; Laird, Peter W; Gutmann, David H; TCGA Research Network; Noushmehr, Houtan; Iavarone, Antonio; Verhaak, Roel G W Cell. 26824661 2016 Jan 28;
Characterising resting-state functional connectivity in a large sample of adults with ADHD. Mostert, Jeanette C; Shumskaya, Elena; Mennes, Maarten; Onnink, A Marten H; Hoogman, Martine; Kan, Cornelis C; Arias Vasquez, Alejandro; Buitelaar, Jan; Franke, Barbara; Norris, David G Progress in neuro-psychopharmacology & biological psychiatry. 26825495 2016 Jun 03;
Temporal neutrophil polarization following myocardial infarction. Ma, Yonggang; Yabluchanskiy, Andriy; Iyer, Rugmani Padmanabhan; Cannon, Presley L; Flynn, Elizabeth R; Jung, Mira; Henry, Jeffrey; Cates, Courtney A; Deleon-Pennell, Kristine Y; Lindsey, Merry L Cardiovascular research. 26825554 2016 May 01;
Quantification of private information leakage from phenotype-genotype data: linking attacks. Harmanci, Arif; Gerstein, Mark Nature methods 26828419 2016 Mar
CAreDroid: Adaptation Framework for Android Context-Aware Applications. Elmalaki, Salma; Wanner, Lucas; Srivastava, Mani Proceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking. 26834512 2015 Sep;
MinION Analysis and Reference Consortium: Phase 1 data release and analysis. Ip, Camilla L C; Loose, Matthew; Tyson, John R; de Cesare, Mariateresa; Brown, Bonnie L; Jain, Miten; Leggett, Richard M; Eccles, David A; Zalunin, Vadim; Urban, John M; Piazza, Paolo; Bowden, Rory J; Paten, Benedict; Mwaigwisya, Solomon; Batty, Elizabeth M; Simpson, Jared T; Snutch, Terrance P; Birney, Ewan; Buck, David; Goodwin, Sara; Jansen, Hans J; O'Grady, Justin; Olsen, Hugh E; MinION Analysis and Reference Consortium F1000Research. 26834992 2015;
Developing a utility decision framework to evaluate predictive models in breast cancer risk estimation. Wu, Yirong; Abbey, Craig K; Chen, Xianqiao; Liu, Jie; Page, David C; Alagoz, Oguzhan; Peissig, Peggy; Onitilo, Adedayo A; Burnside, Elizabeth S Journal of medical imaging (Bellingham, Wash.). 26835489 2015 Oct;
Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data. Guo, Wentian; Li, Hui; Zhu, Yitan; Lan, Li; Yang, Shengjie; Drukker, Karen; Morris, Elizabeth; Burnside, Elizabeth; Whitman, Gary; Giger, Maryellen L; Ji, Yuan; Tcga Breast Phenotype Research Group Journal of medical imaging (Bellingham, Wash.). 26835491 2015 10;
Collaborative Data Analytics with DataHub. Bhardwaj, Anant; Karger, David; Subramanyam, Harihar; Deshpande, Amol; Madden, Sam; Wu, Eugene; Elmore, Aaron; Parameswaran, Aditya; Zhang, Rebecca Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 26844007 2015 Aug;
Smart Drill-Down: A New Data Exploration Operator. Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, Aditya Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 26844008 2015 Aug;
Surpassing Humans and Computers with JellyBean: Crowd-Vision-Hybrid Counting Algorithms. Sarma, Akash Das; Jain, Ayush; Nandi, Arnab; Parameswaran, Aditya; Widom, Jennifer Proceedings of the ... AAAI Conference on Human Computation and Crowdsourcing. 26844304 2015 Nov;
GenAp: a distributed SQL interface for genomic data. Kozanitis, Christos; Patterson, David A BMC bioinformatics. 26846841 2016 Feb 04;
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. Putnam, Nicholas H; O'Connell, Brendan L; Stites, Jonathan C; Rice, Brandon J; Blanchette, Marco; Calef, Robert; Troll, Christopher J; Fields, Andrew; Hartley, Paul D; Sugnet, Charles W; Haussler, David; Rokhsar, Daniel S; Green, Richard E Genome research. 26848124 2016 Mar;
Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Luo, Yuan; Uzuner, Özlem; Szolovits, Peter Briefings in bioinformatics. 26851224 2017 Jan;
Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept. Franke, Barbara; Stein, Jason L; Ripke, Stephan; Anttila, Verneri; Hibar, Derrek P; van Hulzen, Kimm J E; Arias-Vasquez, Alejandro; Smoller, Jordan W; Nichols, Thomas E; Neale, Michael C; McIntosh, Andrew M; Lee, Phil; McMahon, Francis J; Meyer-Lindenberg, Andreas; Mattheisen, Manuel; Andreassen, Ole A; Gruber, Oliver; Sachdev, Perminder S; Roiz-Santiañez, Roberto; Saykin, Andrew J; Ehrlich, Stefan; Mather, Karen A; Turner, Jessica A; Schwarz, Emanuel; Thalamuthu, Anbupalam; Shugart, Yin Yao; Ho, Yvonne Yw; Martin, Nicholas G; Wright, Margaret J; Schizophrenia Working Group of the Psychiatric Genomics Consortium; ENIGMA Consortium; O'Donovan, Michael C; Thompson, Paul M; Neale, Benjamin M; Medland, Sarah E; Sullivan, Patrick F Nature neuroscience. 26854805 2016 Mar;
Subcortical volumetric abnormalities in bipolar disorder. Hibar, D P; Westlye, L T; van Erp, T G M; Rasmussen, J; Leonardo, C D; Faskowitz, J; Haukvik, U K; Hartberg, C B; Doan, N T; Agartz, I; Dale, A M; Gruber, O; Krämer, B; Trost, S; Liberg, B; Abé, C; Ekman, C J; Ingvar, M; Landén, M; Fears, S C; Freimer, N B; Bearden, C E; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes; Sprooten, E; Glahn, D C; Pearlson, G D; Emsell, L; Kenney, J; Scanlon, C; McDonald, C; Cannon, D M; Almeida, J; Versace, A; Caseras, X; Lawrence, N S; Phillips, M L; Dima, D; Delvecchio, G; Frangou, S; Satterthwaite, T D; Wolf, D; Houenou, J; Henry, C; Malt, U F; Bøen, E; Elvsåshagen, T; Young, A H; Lloyd, A J; Goodwin, G M; Mackay, C E; Bourne, C; Bilderbeck, A; Abramovic, L; Boks, M P; van Haren, N E M; Ophoff, R A; Kahn, R S; Bauer, M; Pfennig, A; Alda, M; Hajek, T; Mwangi, B; Soares, J C; Nickson, T; Dimitrova, R; Sussmann, J E; Hagenaars, S; Whalley, H C; McIntosh, A M; Thompson, P M; Andreassen, O A Molecular psychiatry. 26857596 2016 Dec;
ksRepo: a generalized platform for computational drug repositioning. Brown, Adam S; Kong, Sek Won; Kohane, Isaac S; Patel, Chirag J BMC bioinformatics. 26860211 2016 Feb 09;
Durable Disease Control with MEK Inhibition in a Patient with NRAS-mutated Atypical Chronic Myeloid Leukemia. Khanna, Vishesh; Pierce, Scott T; Dao, Kim-Hien T; Tognon, Cristina E; Hunt, David E; Junio, Brian; Tyner, Jeffrey W; Druker, Brian J Cureus. 26870618 2015 Dec 17;
Early developmental gene enhancers affect subcortical volumes in the adult human brain. Becker, Martin; Guadalupe, Tulio; Franke, Barbara; Hibar, Derrek P; Renteria, Miguel E; Stein, Jason L; Thompson, Paul M; Francks, Clyde; Vernes, Sonja C; Fisher, Simon E Human brain mapping. 26890892 2016 May;
Barriers and Negative Nudges: Exploring Challenges in Food Journaling. Cordeiro, Felicia; Epstein, Daniel A; Thomaz, Edison; Bales, Elizabeth; Jagannathan, Arvind K; Abowd, Gregory D; Fogarty, James Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference. 26894233 2015 Apr;
DataSpread: Unifying Databases and Spreadsheets. Bendre, Mangesh; Sun, Bofan; Zhang, Ding; Zhou, Xinyan; Chang, Kevin ChenChuan; Parameswaran, Aditya Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 26900487 2015 Aug;
Inferring causal molecular networks: empirical assessment through a community-based effort. Hill, Steven M; Heiser, Laura M; Cokelaer, Thomas; Unger, Michael; Nesser, Nicole K; Carlin, Daniel E; Zhang, Yang; Sokolov, Artem; Paull, Evan O; Wong, Chris K; Graim, Kiley; Bivol, Adrian; Wang, Haizhou; Zhu, Fan; Afsari, Bahman; Danilova, Ludmila V; Favorov, Alexander V; Lee, Wai Shing; Taylor, Dane; Hu, Chenyue W; Long, Byron L; Noren, David P; Bisberg, Alexander J; HPN-DREAM Consortium; Mills, Gordon B; Gray, Joe W; Kellen, Michael; Norman, Thea; Friend, Stephen; Qutub, Amina A; Fertig, Elana J; Guan, Yuanfang; Song, Mingzhou; Stuart, Joshua M; Spellman, Paul T; Koeppl, Heinz; Stolovitzky, Gustavo; Saez-Rodriguez, Julio; Mukherjee, Sach Nature methods. 26901648 2016 Apr;
The Use of Behavior Change Techniques and Theory in Technologies for Cardiovascular Disease Prevention and Treatment in Adults: A Comprehensive Review. Winter, Sandra J; Sheats, Jylana L; King, Abby C Progress in cardiovascular diseases. 26902519 2016 May-Jun;
Response to Dr Fried & Dr Kievit, and Dr Malhi et al. Schmaal, L; Veltman, D J; van Erp, T G M; Sämann, P G; Frodl, T; Jahanshad, N; Loehrer, E; Vernooij, M W; Niessen, W J; Ikram, M A; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Hoehn, D; Czisch, M; Lagopoulos, J; Hatton, S N; Hickie, I B; Goya-Maldonado, R; Krämer, B; Gruber, O; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Wright, M J; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hall, G B; van Velzen, L S; van Tol, M-J; van der Wee, N J; Veer, I M; Walter, H; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; McIntosh, A M; Whalley, H C; Sussmann, J E; Godlewska, B R; Fischer, F H; Penninx, B W J H; Thompson, P M; Hibar, D P Molecular psychiatry. 26903270 2016 06;
Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. Sweeney, Timothy E; Braviak, Lindsay; Tato, Cristina M; Khatri, Purvesh The Lancet. Respiratory medicine. 26907218 2016 Mar;
Estimation and testing for multiple regulation of multivariate mixed outcomes. Agniel, Denis; Liao, Katherine P; Cai, Tianxi Biometrics. 26910481 2016 Dec;
Guidelines for the functional annotation of microRNAs using the Gene Ontology. Huntley, Rachael P; Sitnikov, Dmitry; Orlic-Milacic, Marija; Balakrishnan, Rama; D'Eustachio, Peter; Gillespie, Marc E; Howe, Doug; Kalea, Anastasia Z; Maegdefessel, Lars; Osumi-Sutherland, David; Petri, Victoria; Smith, Jennifer R; Van Auken, Kimberly; Wood, Valerie; Zampetaki, Anna; Mayr, Manuel; Lovering, Ruth C RNA (New York, N.Y.). 26917558 2016 May;
Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data. Dinov, Ivo D GigaScience. 26918190 2016;
The Implicitome: A Resource for Rationalizing Gene-Disease Associations. Hettne, Kristina M; Thompson, Mark; van Haagen, Herman H H B M; van der Horst, Eelke; Kaliyaperumal, Rajaram; Mina, Eleni; Tatum, Zuotian; Laros, Jeroen F J; van Mulligen, Erik M; Schuemie, Martijn; Aten, Emmelien; Li, Tong Shu; Bruskiewich, Richard; Good, Benjamin M; Su, Andrew I; Kors, Jan A; den Dunnen, Johan; van Ommen, Gert-Jan B; Roos, Marco; 't Hoen, Peter A C; Mons, Barend; Schultes, Erik A PloS one. 26919047 2016;
Sharing big biomedical data. Toga, Arthur W; Dinov, Ivo D Journal of big data. 26929900 2015;
Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running. Uchida, Thomas K; Hicks, Jennifer L; Dembia, Christopher L; Delp, Scott L PloS one 26930416 2016
Enlarged striatal volume in adults with ADHD carrying the 9-6 haplotype of the dopamine transporter gene DAT1. Onnink, A Marten H; Franke, Barbara; van Hulzen, Kimm; Zwiers, Marcel P; Mostert, Jeanette C; Schene, Aart H; Heslenfeld, Dirk J; Oosterlaan, Jaap; Hoekstra, Pieter J; Hartman, Catharina A; Vasquez, Alejandro Arias; Kan, Cornelis C; Buitelaar, Jan; Hoogman, Martine Journal of neural transmission (Vienna, Austria : 1996). 26935821 2016 Aug;
Health and population effects of rare gene knockouts in adult humans with related parents. Narasimhan, Vagheesh M; Hunt, Karen A; Mason, Dan; Baker, Christopher L; Karczewski, Konrad J; Barnes, Michael R; Barnett, Anthony H; Bates, Chris; Bellary, Srikanth; Bockett, Nicholas A; Giorda, Kristina; Griffiths, Christopher J; Hemingway, Harry; Jia, Zhilong; Kelly, M Ann; Khawaja, Hajrah A; Lek, Monkol; McCarthy, Shane; McEachan, Rosie; O'Donnell-Luria, Anne; Paigen, Kenneth; Parisinos, Constantinos A; Sheridan, Eamonn; Southgate, Laura; Tee, Louise; Thomas, Mark; Xue, Yali; Schnall-Levin, Michael; Petkov, Petko M; Tyler-Smith, Chris; Maher, Eamonn R; Trembath, Richard C; MacArthur, Daniel G; Wright, John; Durbin, Richard; van Heel, David A Science (New York, N.Y.). 26940866 2016 Apr 22;
Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models. Sul, Jae Hoon; Bilow, Michael; Yang, Wen-Yun; Kostem, Emrah; Furlotte, Nick; He, Dan; Eskin, Eleazar PLoS genetics 26943367 2016 Mar
Data publication with the structural biology data grid supports live analysis. Meyer, Peter A; Socias, Stephanie; Key, Jason; Ransey, Elizabeth; Tjon, Emily C; Buschiazzo, Alejandro; Lei, Ming; Botka, Chris; Withrow, James; Neau, David; Rajashankar, Kanagalaghatta; Anderson, Karen S; Baxter, Richard H; Blacklow, Stephen C; Boggon, Titus J; Bonvin, Alexandre M J J; Borek, Dominika; Brett, Tom J; Caflisch, Amedeo; Chang, Chung-I; Chazin, Walter J; Corbett, Kevin D; Cosgrove, Michael S; Crosson, Sean; Dhe-Paganon, Sirano; Di Cera, Enrico; Drennan, Catherine L; Eck, Michael J; Eichman, Brandt F; Fan, Qing R; Ferré-D'Amaré, Adrian R; Fromme, J Christopher; Garcia, K Christopher; Gaudet, Rachelle; Gong, Peng; Harrison, Stephen C; Heldwein, Ekaterina E; Jia, Zongchao; Keenan, Robert J; Kruse, Andrew C; Kvansakul, Marc; McLellan, Jason S; Modis, Yorgo; Nam, Yunsun; Otwinowski, Zbyszek; Pai, Emil F; Pereira, Pedro José Barbosa; Petosa, Carlo; Raman, C S; Rapoport, Tom A; Roll-Mecak, Antonina; Rosen, Michael K; Rudenko, Gabby; Schlessinger, Joseph; Schwartz, Thomas U; Shamoo, Yousif; Sondermann, Holger; Tao, Yizhi J; Tolia, Niraj H; Tsodikov, Oleg V; Westover, Kenneth D; Wu, Hao; Foster, Ian; Fraser, James S; Maia, Filipe R N C; Gonen, Tamir; Kirchhausen, Tom; Diederichs, Kay; Crosas, Mercè; Sliz, Piotr Nature communications. 26947396 2016 Mar 07;
Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution. Gasch, Audrey P; Hose, James; Newton, Michael A; Sardi, Maria; Yong, Mun; Wang, Zhishi eLife. 26949252 2016;
Electrophysiological Endophenotypes for Schizophrenia. Owens, Emily M; Bachman, Peter; Glahn, David C; Bearden, Carrie E Harvard review of psychiatry. 26954597 2016 Mar-Apr;
Age, APOE and sex: Triad of risk of Alzheimer's disease. Riedel, Brandalyn C; Thompson, Paul M; Brinton, Roberta Diaz The Journal of steroid biochemistry and molecular biology. 26969397 2016 Jun;
Calponin isoforms CNN1, CNN2 and CNN3: Regulators for actin cytoskeleton functions in smooth muscle and non-muscle cells. Liu, Rong; Jin, J-P Gene. 26970176 2016 Jul 01;
The effect of increased genetic risk for Alzheimer's disease on hippocampal and amygdala volume. Lupton, Michelle K; Strike, Lachlan; Hansell, Narelle K; Wen, Wei; Mather, Karen A; Armstrong, Nicola J; Thalamuthu, Anbupalam; McMahon, Katie L; de Zubicaray, Greig I; Assareh, Amelia A; Simmons, Andrew; Proitsi, Petroula; Powell, John F; Montgomery, Grant W; Hibar, Derrek P; Westman, Eric; Tsolaki, Magda; Kloszewska, Iwona; Soininen, Hilkka; Mecocci, Patrizia; Velas, Bruno; Lovestone, Simon; Alzheimer's Disease Neuroimaging Initiative; Brodaty, Henry; Ames, David; Trollor, Julian N; Martin, Nicholas G; Thompson, Paul M; Sachdev, Perminder S; Wright, Margaret J Neurobiology of aging. 26973105 2016 Apr;
Delving into Egocentric Actions. Li, Yin; Ye, Zhefan; Rehg, James M Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 26973427 2015 Jun;
Gaze-enabled Egocentric Video Summarization via Constrained Submodular Maximization. Xut, Jia; Mukherjee, Lopamudra; Li, Yin; Warner, Jamieson; Rehg, James M; Singht, Vikas Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 26973428 2015 Jun;
Manifold-valued Dirichlet Processes. Kim, Hyunwoo J; Xu, Jia; Vemuri, Baba C; Singh, Vikas Proceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning. 26973982 2015 Jul;
NetDecoder: a network biology platform that decodes context-specific biological networks and gene activities. da Rocha, Edroaldo Lummertz; Ung, Choong Yong; McGehee, Cordelia D; Correia, Cristina; Li, Hu Nucleic acids research 26975659 2016 Jun 02
A large dataset of protein dynamics in the mammalian heart proteome. Lau, Edward; Cao, Quan; Ng, Dominic C M; Bleakley, Brian J; Dincer, T Umut; Bot, Brian M; Wang, Ding; Liem, David A; Lam, Maggie P Y; Ge, Junbo; Ping, Peipei Scientific data. 26977904 2016;
Wikidata as a semantic framework for the Gene Wiki initiative. Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Mitraka, Elvira; Turner, Julia; Putman, Tim; Leong, Justin; Naik, Chinmay; Pavlidis, Paul; Schriml, Lynn; Good, Benjamin M; Su, Andrew I Database : the journal of biological databases and curation 26989148 2016
Statistical Inference Models for Image Datasets with Systematic Variations. Kim, Won Hwa; Bendlin, Barbara B; Chung, Moo K; Johnson, Sterling C; Singh, Vikas Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 26989336 2015 Jun;
Tensor factorization toward precision medicine. Luo, Yuan; Wang, Fei; Szolovits, Peter Briefings in bioinformatics. 26994614 2017 05 01;
A history of breast cancer and older age allow risk stratification of mammographic BI-RADS 3 ratings in the diagnostic setting. Benndorf, Matthias; Wu, Yirong; Burnside, Elizabeth S Clinical imaging. 26995570 2016 Mar-Apr;
Volume and Value of Big Healthcare Data. Dinov, Ivo D Journal of medical statistics and informatics. 26998309 2016;
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Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Putman, Tim E; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Wu, Chunlei; Su, Andrew I; Good, Benjamin M Database : the journal of biological databases and curation 27022157 2016
Autism spectrum disorder and attention-deficit/hyperactivity disorder in early childhood: A review of unique and shared characteristics and developmental antecedents. Visser, Janne C; Rommelse, Nanda N J; Greven, Corina U; Buitelaar, Jan K Neuroscience and biobehavioral reviews. 27026637 2016 06;
Long-read sequence assembly of the gorilla genome. Gordon, David; Huddleston, John; Chaisson, Mark J P; Hill, Christopher M; Kronenberg, Zev N; Munson, Katherine M; Malig, Maika; Raja, Archana; Fiddes, Ian; Hillier, LaDeana W; Dunn, Christopher; Baker, Carl; Armstrong, Joel; Diekhans, Mark; Paten, Benedict; Shendure, Jay; Wilson, Richard K; Haussler, David; Chin, Chen-Shan; Eichler, Evan E Science (New York, N.Y.). 27034376 2016 Apr 01;
Mining Multi-Aspect Reflection of News Events in Twitter: Discovery, Linking and Presentation. Wang, Jingjing; Tong, Wenzhu; Yu, Hongkun; Li, Min; Ma, Xiuli; Cai, Haoyan; Hanratty, Tim; Han, Jiawei Proceedings. IEEE International Conference on Data Mining. 27034625 2015 Nov;
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Adolescent behavioral and neural reward sensitivity: a test of the differential susceptibility theory. Richards, J S; Arias Vásquez, A; von Rhein, D; van der Meer, D; Franke, B; Hoekstra, P J; Heslenfeld, D J; Oosterlaan, J; Faraone, S V; Buitelaar, J K; Hartman, C A Translational psychiatry. 27045841 2016 Apr 05;
Design and computational analysis of single-cell RNA-sequencing experiments. Bacher, Rhonda; Kendziorski, Christina Genome biology. 27052890 2016 Apr 07;
Systematic correlation of environmental exposure and physiological and self-reported behaviour factors with leukocyte telomere length. Patel, Chirag J; Manrai, Arjun K; Corona, Erik; Kohane, Isaac S International journal of epidemiology. 27059547 2016 Apr 8;
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Influence of APOE Genotype on Hippocampal Atrophy over Time - An N=1925 Surface-Based ADNI Study. Li, Bolun; Shi, Jie; Gutman, Boris A; Baxter, Leslie C; Thompson, Paul M; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative PloS one. 27065111 2016;
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Effect of Electroconvulsive Therapy on Striatal Morphometry in Major Depressive Disorder. Wade, Benjamin S C; Joshi, Shantanu H; Njau, Stephanie; Leaver, Amber M; Vasavada, Megha; Woods, Roger P; Gutman, Boris A; Thompson, Paul M; Espinoza, Randall; Narr, Katherine L Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 27067127 2016 09;
Ventral Striatum Connectivity During Reward Anticipation in Adolescent Smokers. Jollans, Lee; Zhipeng, Cao; Icke, Ilknur; Greene, Ciara; Kelly, Clare; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Whelan, Robert Developmental neuropsychology. 27074029 2016 Jan-Mar;
Mesochronal Structure Learning. Plis, Sergey; Danks, David; Yang, Jianyu Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. 27076793 2015 Jul 12;
Donor Retention in Online Crowdfunding Communities: A Case Study of DonorsChoose.org. Althoff, Tim; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 27077139 2015 May;
Machine Reading for Extraction of Bacteria and Habitat Taxonomies. Kordjamshidi, Parisa; Massa, Wouter; Provoost, Thomas; Moens, Marie-Francine Biomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference). 27077141 2015 Jan;
Ringo: Interactive Graph Analytics on Big-Memory Machines. Perez, Yonathan; Sosi?, Rok; Banerjee, Arijit; Puttagunta, Rohan; Raison, Martin; Shah, Pararth; Leskovec, Jure Proceedings. ACM-Sigmod International Conference on Management of Data. 27081215 2015 May-Jun;
A Projection free method for Generalized Eigenvalue Problem with a nonsmooth Regularizer. Hwang, Seong Jae; Collins, Maxwell D; Ravi, Sathya N; Ithapu, Vamsi K; Adluru, Nagesh; Johnson, Sterling C; Singh, Vikas Proceedings. IEEE International Conference on Computer Vision. 27081374 2015 Dec;
Utilizing uncoded consultation notes from electronic medical records for predictive modeling of colorectal cancer. Hoogendoorn, Mark; Szolovits, Peter; Moons, Leon M G; Numans, Mattijs E Artificial intelligence in medicine. 27085847 2016 May;
A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Li, Tong Shu; Bravo, Àlex; Furlong, Laura I; Good, Benjamin M; Su, Andrew I Database : the journal of biological databases and curation. 27087308 2016;
Developing a clinical utility framework to evaluate prediction models in radiogenomics. Wu, Yirong; Liu, Jie; Del Rio, Alejandro Munoz; Page, David C; Alagoz, Oguzhan; Peissig, Peggy; Onitilo, Adedayo A; Burnside, Elizabeth S Proceedings of SPIE--the International Society for Optical Engineering. 27095854 2015 Feb 21;
Transformation Invariant Control of Voxel-Wise False Discovery Rate. Li, Junning; Shi, Yonggang; Toga, Arthur W IEEE transactions on medical imaging. 27101602 2016 10;
Cognitive profiles and heritability estimates in the Old Order Amish. Kuehner, Ryan M; Kochunov, Peter; Nugent, Katie L; Jurius, Deanna E; Savransky, Anya; Gaudiot, Christopher; Bruce, Heather A; Gold, James; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L Elliot Psychiatric genetics. 27105171 2016 08;
Whole-Genome Sequencing of a Healthy Aging Cohort. Erikson, Galina A; Bodian, Dale L; Rueda, Manuel; Molparia, Bhuvan; Scott, Erick R; Scott-Van Zeeland, Ashley A; Topol, Sarah E; Wineinger, Nathan E; Niederhuber, John E; Topol, Eric J; Torkamani, Ali Cell. 27114037 2016 May 05;
Cortical abnormalities in adults and adolescents with major depression based on brain scans from 20 cohorts worldwide in the ENIGMA Major Depressive Disorder Working Group. Schmaal, L; Hibar, D P; Sämann, P G; Hall, G B; Baune, B T; Jahanshad, N; Cheung, J W; van Erp, T G M; Bos, D; Ikram, M A; Vernooij, M W; Niessen, W J; Tiemeier, H; Hofman, A; Wittfeld, K; Grabe, H J; Janowitz, D; Bülow, R; Selonke, M; Völzke, H; Grotegerd, D; Dannlowski, U; Arolt, V; Opel, N; Heindel, W; Kugel, H; Hoehn, D; Czisch, M; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Wright, M J; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Martin, N G; Gillespie, N A; Goya-Maldonado, R; Gruber, O; Krämer, B; Hatton, S N; Lagopoulos, J; Hickie, I B; Frodl, T; Carballedo, A; Frey, E M; van Velzen, L S; Penninx, B W J H; van Tol, M-J; van der Wee, N J; Davey, C G; Harrison, B J; Mwangi, B; Cao, B; Soares, J C; Veer, I M; Walter, H; Schoepf, D; Zurowski, B; Konrad, C; Schramm, E; Normann, C; Schnell, K; Sacchet, M D; Gotlib, I H; MacQueen, G M; Godlewska, B R; Nickson, T; McIntosh, A M; Papmeyer, M; Whalley, H C; Hall, J; Sussmann, J E; Li, M; Walter, M; Aftanas, L; Brack, I; Bokhan, N A; Thompson, P M; Veltman, D J Molecular psychiatry. 27137745 2017 Jun;
Incremental Knowledge Base Construction Using DeepDive. Shin, Jaeho; Wu, Sen; Wang, Feiran; De Sa, Christopher; Zhang, Ce; Ré, Christopher Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 27144081 2015 Jul;
Mindtagger: A Demonstration of Data Labeling in Knowledge Base Construction. Shin, Jaeho; Ré, Christopher; Cafarella, Michael Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 27144082 2015 Aug;
MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays. Li, Hui; Zhu, Yitan; Burnside, Elizabeth S; Drukker, Karen; Hoadley, Katherine A; Fan, Cheng; Conzen, Suzanne D; Whitman, Gary J; Sutton, Elizabeth J; Net, Jose M; Ganott, Marie; Huang, Erich; Morris, Elizabeth A; Perou, Charles M; Ji, Yuan; Giger, Maryellen L Radiology. 27144536 2016 Nov;
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Facilitating a culture of responsible and effective sharing of cancer genome data. Siu, Lillian L; Lawler, Mark; Haussler, David; Knoppers, Bartha Maria; Lewin, Jeremy; Vis, Daniel J; Liao, Rachel G; Andre, Fabrice; Banks, Ian; Barrett, J Carl; Caldas, Carlos; Camargo, Anamaria Aranha; Fitzgerald, Rebecca C; Mao, Mao; Mattison, John E; Pao, William; Sellers, William R; Sullivan, Patrick; Teh, Bin Tean; Ward, Robyn L; ZenKlusen, Jean Claude; Sawyers, Charles L; Voest, Emile E Nature medicine. 27149219 2016 05 05;
Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks. Blatti, Charles; Sinha, Saurabh Bioinformatics (Oxford, England). 27153592 2016 Jul 15;
Branch: an interactive, web-based tool for testing hypotheses and developing predictive models. Gangavarapu, Karthik; Babji, Vyshakh; Meißner, Tobias; Su, Andrew I; Good, Benjamin M Bioinformatics (Oxford, England). 27153723 2016 Jul 01;
High-performance web services for querying gene and variant annotation. Xin, Jiwen; Mark, Adam; Afrasiabi, Cyrus; Tsueng, Ginger; Juchler, Moritz; Gopal, Nikhil; Stupp, Gregory S; Putman, Timothy E; Ainscough, Benjamin J; Griffith, Obi L; Torkamani, Ali; Whetzel, Patricia L; Mungall, Christopher J; Mooney, Sean D; Su, Andrew I; Wu, Chunlei Genome biology. 27154141 2016 May 06;
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Testing differential susceptibility: Plasticity genes, the social environment, and their interplay in adolescent response inhibition. Richards, Jennifer S; Arias Vásquez, Alejandro; van Rooij, Daan; van der Meer, Dennis; Franke, Barbara; Hoekstra, Pieter J; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Hartman, Catharina A; Buitelaar, Jan K The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. 27170266 2017 Jun;
Markov Boundary Discovery with Ridge Regularized Linear Models. Strobl, Eric V; Visweswaran, Shyam Journal of causal inference. 27170915 2016 Mar;
Pallidum and lateral ventricle volume enlargement in autism spectrum disorder. Turner, Andia H; Greenspan, Kiefer S; van Erp, Theo G M Psychiatry research. Neuroimaging. 27179315 2016 Jun 30;
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Attention-deficit/hyperactivity disorder. Faraone, Stephen V; Asherson, Philip; Banaschewski, Tobias; Biederman, Joseph; Buitelaar, Jan K; Ramos-Quiroga, Josep Antoni; Rohde, Luis Augusto; Sonuga-Barke, Edmund J S; Tannock, Rosemary; Franke, Barbara Nature reviews. Disease primers. 27189265 2015 08 06;
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Developmentally Sensitive Interaction Effects of Genes and the Social Environment on Total and Subcortical Brain Volumes. Richards, Jennifer S; Arias Vásquez, Alejandro; Franke, Barbara; Hoekstra, Pieter J; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Buitelaar, Jan K; Hartman, Catharina A PloS one. 27218681 2016;
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Robust Multi-Network Clustering via Joint Cross-Domain Cluster Alignment. Liu, Rui; Cheng, Wei; Tong, Hanghang; Wang, Wei; Zhang, Xiang Proceedings. IEEE International Conference on Data Mining. 27239167 2015 Nov;
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MULTI-RESOLUTION STATISTICAL ANALYSIS ON GRAPH STRUCTURED DATA IN NEUROIMAGING. Kim, Won Hwa; Singh, Vikas; Chung, Moo K; Adluru, Nagesh; Bendlin, Barbara B; Johnson, Sterling C Proceedings. IEEE International Symposium on Biomedical Imaging. 27284387 2015 Apr;
Imputing Phenotypes for Genome-wide Association Studies. Hormozdiari, Farhad; Kang, Eun Yong; Bilow, Michael; Ben-David, Eyal; Vulpe, Chris; McLachlan, Stela; Lusis, Aldons J; Han, Buhm; Eskin, Eleazar American journal of human genetics. 27292110 2016 Jul 7;
Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium. Salomonis, Nathan; Dexheimer, Phillip J; Omberg, Larsson; Schroll, Robin; Bush, Stacy; Huo, Jeffrey; Schriml, Lynn; Ho Sui, Shannan; Keddache, Mehdi; Mayhew, Christopher; Shanmukhappa, Shiva Kumar; Wells, James; Daily, Kenneth; Hubler, Shane; Wang, Yuliang; Zambidis, Elias; Margolin, Adam; Hide, Winston; Hatzopoulos, Antonis K; Malik, Punam; Cancelas, Jose A; Aronow, Bruce J; Lutzko, Carolyn Stem cell reports. 27293150 ;
Learning mixed graphical models with separate sparsity parameters and stability-based model selection. Sedgewick, Andrew J; Shi, Ivy; Donovan, Rory M; Benos, Panayiotis V BMC bioinformatics. 27294886 2016 Jun 06;
Integrated analysis of gray and white matter alterations in attention-deficit/hyperactivity disorder. Francx, Winke; Llera, Alberto; Mennes, Maarten; Zwiers, Marcel P; Faraone, Stephen V; Oosterlaan, Jaap; Heslenfeld, Dirk; Hoekstra, Pieter J; Hartman, Catharina A; Franke, Barbara; Buitelaar, Jan K; Beckmann, Christian F NeuroImage. Clinical. 27298764 2016;
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Bravo, Àlex; Li, Tong Shu; Su, Andrew I; Good, Benjamin M; Furlong, Laura I Database : the journal of biological databases and curation. 27307137 2016;
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DeepMeSH: deep semantic representation for improving large-scale MeSH indexing. Peng, Shengwen; You, Ronghui; Wang, Hongning; Zhai, Chengxiang; Mamitsuka, Hiroshi; Zhu, Shanfeng Bioinformatics (Oxford, England). 27307646 2016 06 15;
PRKCE gene encoding protein kinase C-epsilon-Dual roles at sarcomeres and mitochondria in cardiomyocytes. Scruggs, Sarah B; Wang, Ding; Ping, Peipei Gene. 27312950 2016 Sep 15;
What Is Going on Inside the Arrows? Discovering the Hidden Springs in Causal Models. Murray-Watters, Alexander; Glymour, Clark Philosophy of science. 27313331 2015 Oct;
Caffe con Troll: Shallow Ideas to Speed Up Deep Learning. Hadjis, Stefan; Abuzaid, Firas; Zhang, Ce; Ré, Christopher Proceedings of the Fourth Workshop on Data analytics at sCale (DanaC 2015) : May 31st, 2015, Melbourne, Australia. Workshop on Data Analytics in the Cloud (4th : 2015 : Melbourne, Vic.). 27314106 2015 May-Jun;
Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals. Chikina, Maria; Robinson, Joseph D; Clark, Nathan L Molecular biology and evolution. 27329977 2016 Sep;
Taming the Wild: A Unified Analysis of Hogwild!-Style Algorithms. De Sa, Christopher; Zhang, Ce; Olukotun, Kunle; Ré, Christopher Advances in neural information processing systems. 27330264 2015 Dec;
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Identification of Gene Loci That Overlap Between Schizophrenia and Educational Attainment. Le Hellard, Stéphanie; Wang, Yunpeng; Witoelar, Aree; Zuber, Verena; Bettella, Francesco; Hugdahl, Kenneth; Espeseth, Thomas; Steen, Vidar M; Melle, Ingrid; Desikan, Rahul; Schork, Andrew J; Thompson, Wesley K; Dale, Anders M; Djurovic, Srdjan; Andreassen, Ole A; Schizophrenia Working Group of the Psychiatric Genomics Consortium Schizophrenia bulletin. 27338279 2017 05 01;
Disentangling the autism-anxiety overlap: fMRI of reward processing in a community-based longitudinal study. Mikita, N; Simonoff, E; Pine, D S; Goodman, R; Artiges, E; Banaschewski, T; Bokde, A L; Bromberg, U; Büchel, C; Cattrell, A; Conrod, P J; Desrivières, S; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Heinz, A; Ittermann, B; Jurk, S; Martinot, J L; Paillère Martinot, M L; Nees, F; Papadopoulos Orfanos, D; Paus, T; Poustka, L; Smolka, M N; Walter, H; Whelan, R; Schumann, G; Stringaris, A Translational psychiatry. 27351599 2016 06 28;
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Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR. Haeussler, Maximilian; Schönig, Kai; Eckert, Hélène; Eschstruth, Alexis; Mianné, Joffrey; Renaud, Jean-Baptiste; Schneider-Maunoury, Sylvie; Shkumatava, Alena; Teboul, Lydia; Kent, Jim; Joly, Jean-Stephane; Concordet, Jean-Paul Genome biology. 27380939 2016 Jul 05;
Mapping Murine Corneal Neovascularization and Weight Loss Virulence Determinants in the Herpes Simplex Virus 1 Genome and the Detection of an Epistatic Interaction between the UL and IRS/US Regions. Lee, Kyubin; Kolb, Aaron W; Larsen, Inna; Craven, Mark; Brandt, Curtis R Journal of virology. 27384650 2016 09 15;
Genetic Dissection of Cardiac Remodeling in an Isoproterenol-Induced Heart Failure Mouse Model. Wang, Jessica Jen-Chu; Rau, Christoph; Avetisyan, Rozeta; Ren, Shuxun; Romay, Milagros C; Stolin, Gabriel; Gong, Ke Wei; Wang, Yibin; Lusis, Aldons J PLoS genetics. 27385019 2016 07;
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BigDebug: Debugging Primitives for Interactive Big Data Processing in Spark. Gulzar, Muhammad Ali; Interlandi, Matteo; Yoo, Seunghyun; Tetali, Sai Deep; Condie, Tyson; Millstein, Todd; Kim, Miryung Proceedings - International Conference on Software Engineering. International Conference on Software Engineering. 27390389 2016 May;
Interplay between stress response genes associated with attention-deficit hyperactivity disorder and brain volume. van der Meer, D; Hoekstra, P J; Bralten, J; van Donkelaar, M; Heslenfeld, D J; Oosterlaan, J; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C A Genes, brain, and behavior. 27391809 2016 09;
Full-Body Musculoskeletal Model for Muscle-Driven Simulation of Human Gait. Rajagopal, Apoorva; Dembia, Christopher L; DeMers, Matthew S; Delp, Denny D; Hicks, Jennifer L; Delp, Scott L IEEE transactions on bio-medical engineering. 27392337 2016 10;
Network Lasso: Clustering and Optimization in Large Graphs. Hallac, David; Leskovec, Jure; Boyd, Stephen KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 27398260 2015 Aug;
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Crowdsourcing biomedical research: leveraging communities as innovation engines. Saez-Rodriguez, Julio; Costello, James C; Friend, Stephen H; Kellen, Michael R; Mangravite, Lara; Meyer, Pablo; Norman, Thea; Stolovitzky, Gustavo Nature reviews. Genetics. 27418159 2016 07 15;
Volumetric and shape analyses of subcortical structures in United States service members with mild traumatic brain injury. Tate, David F; Wade, Benjamin S C; Velez, Carmen S; Drennon, Ann Marie; Bolzenius, Jacob; Gutman, Boris A; Thompson, Paul M; Lewis, Jeffrey D; Wilde, Elisabeth A; Bigler, Erin D; Shenton, Martha E; Ritter, John L; York, Gerald E Journal of neurology. 27435967 2016 Oct;
On longitudinal prediction with time-to-event outcome: Comparison of modeling options. Maziarz, Marlena; Heagerty, Patrick; Cai, Tianxi; Zheng, Yingye Biometrics. 27438160 2017 Mar;
Correction: Effects of Three Motivationally Targeted Mobile Device Applications on Initial Physical Activity and Sedentary Behavior Change in Midlife and Older Adults: A Randomized Trial. PLOS ONE Staff PloS one. 27442244 2016;
Environment-Wide Association Study of Blood Pressure in the National Health and Nutrition Examination Survey (1999-2012). McGinnis, Denise P; Brownstein, John S; Patel, Chirag J Scientific reports. 27457472 2016 Jul 26;
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Brain structural changes following adaptive cognitive training assessed by Tensor-Based Morphometry (TBM). Colom, Roberto; Hua, Xue; Martínez, Kenia; Burgaleta, Miguel; Román, Francisco J; Gunter, Jeffrey L; Carmona, Susanna; Jaeggi, Susanne M; Thompson, Paul M Neuropsychologia. 27477628 2016 Oct;
Heterochronicity of white matter development and aging explains regional patient control differences in schizophrenia. Kochunov, Peter; Ganjgahi, Habib; Winkler, Anderson; Kelly, Sinead; Shukla, Dinesh K; Du, Xiaoming; Jahanshad, Neda; Rowland, Laura; Sampath, Hemalatha; Patel, Binish; O'Donnell, Patricio; Xie, Zhiyong; Paciga, Sara A; Schubert, Christian R; Chen, Jian; Zhang, Guohao; Thompson, Paul M; Nichols, Thomas E; Hong, L Elliot Human brain mapping. 27477775 2016 Dec;
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Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Beavis, Ronald C; Overall, Christopher M; Deutsch, Eric W Journal of proteome research. 27487407 2016 Nov 04;
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Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. Deutsch, Eric W; Overall, Christopher M; Van Eyk, Jennifer E; Baker, Mark S; Paik, Young-Ki; Weintraub, Susan T; Lane, Lydie; Martens, Lennart; Vandenbrouck, Yves; Kusebauch, Ulrike; Hancock, William S; Hermjakob, Henning; Aebersold, Ruedi; Moritz, Robert L; Omenn, Gilbert S Journal of proteome research. 27490519 2016 Nov 04;
Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations. Dinov, Ivo D; Heavner, Ben; Tang, Ming; Glusman, Gustavo; Chard, Kyle; Darcy, Mike; Madduri, Ravi; Pa, Judy; Spino, Cathie; Kesselman, Carl; Foster, Ian; Deutsch, Eric W; Price, Nathan D; Van Horn, John D; Ames, Joseph; Clark, Kristi; Hood, Leroy; Hampstead, Benjamin M; Dauer, William; Toga, Arthur W PloS one. 27494614 2016;
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MORPHOMETRIC ANALYSIS OF HIPPOCAMPUS AND LATERAL VENTRICLE REVEALS REGIONAL DIFFERENCE BETWEEN COGNITIVELY STABLE AND DECLINING PERSONS. Zhang, Wen; Shi, Jie; Stonnington, Cynthia; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, Yalin Proceedings. IEEE International Symposium on Biomedical Imaging. 27499828 2016 Apr;
APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE. Zhang, Jie; Stonnington, Cynthia; Li, Qingyang; Shi, Jie; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Thompson, Paul M; Ye, Jieping; Wang, Yalin Proceedings. IEEE International Symposium on Biomedical Imaging. 27499829 2016 Apr;
Blockwise Human Brain Network Visual Comparison Using NodeTrix Representation. Yang, Xinsong; Shi, Lei; Daianu, Madelaine; Tong, Hanghang; Liu, Qingsong; Thompson, Paul IEEE transactions on visualization and computer graphics. 27514058 2017 Jan;
Defining the sham environment for post-myocardial infarction studies in mice. Iyer, Rugmani Padmanabhan; de Castro Brás, Lisandra E; Cannon, Presley L; Ma, Yonggang; DeLeon-Pennell, Kristine Y; Jung, Mira; Flynn, Elizabeth R; Henry, Jeffrey B; Bratton, Dustin R; White, Jared A; Fulton, Linda K; Grady, Andrew W; Lindsey, Merry L American journal of physiology. Heart and circulatory physiology 27521418 2016 Sep 01
Leveraging Citizen Science and Information Technology for Population Physical Activity Promotion. King, Abby C; Winter, Sandra J; Sheats, Jylana L; Rosas, Lisa G; Buman, Matthew P; Salvo, Deborah; Rodriguez, Nicole M; Seguin, Rebecca A; Moran, Mika; Garber, Randi; Broderick, Bonnie; Zieff, Susan G; Sarmiento, Olga Lucia; Gonzalez, Silvia A; Banchoff, Ann; Dommarco, Juan Rivera Translational journal of the American College of Sports Medicine. 27525309 2016 May 15;
A comprehensive and scalable database search system for metaproteomics. Chatterjee, Sandip; Stupp, Gregory S; Park, Sung Kyu Robin; Ducom, Jean-Christophe; Yates 3rd, John R; Su, Andrew I; Wolan, Dennis W BMC genomics. 27528457 2016 08 16;
Statistical detection of geographic clusters of resistant Escherichia coli in a regional network with WHONET and SaTScan. Park, Rachel; O'Brien, Thomas F; Huang, Susan S; Baker, Meghan A; Yokoe, Deborah S; Kulldorff, Martin; Barrett, Craig; Swift, Jamie; Stelling, John; Centers for Disease Control and Prevention Epicenters Program Expert review of anti-infective therapy. 27530311 2016 11;
Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. Walsh, Roddy; Thomson, Kate L; Ware, James S; Funke, Birgit H; Woodley, Jessica; McGuire, Karen J; Mazzarotto, Francesco; Blair, Edward; Seller, Anneke; Taylor, Jenny C; Minikel, Eric V; Exome Aggregation Consortium; MacArthur, Daniel G; Farrall, Martin; Cook, Stuart A; Watkins, Hugh Genetics in medicine : official journal of the American College of Medical Genetics. 27532257 2017 02;
Patterns of genic intolerance of rare copy number variation in 59,898 human exomes. Ruderfer, Douglas M; Hamamsy, Tymor; Lek, Monkol; Karczewski, Konrad J; Kavanagh, David; Samocha, Kaitlin E; Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel G; Fromer, Menachem; Purcell, Shaun M Nature genetics. 27533299 2016 Oct;
Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. Chu, Li-Fang; Leng, Ning; Zhang, Jue; Hou, Zhonggang; Mamott, Daniel; Vereide, David T; Choi, Jeea; Kendziorski, Christina; Stewart, Ron; Thomson, James A Genome biology. 27534536 2016 Aug 17;
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Integration of 60,000 exomes and ACMG guidelines question the role of Catecholaminergic Polymorphic Ventricular Tachycardia-associated variants. Paludan-Müller, C; Ahlberg, G; Ghouse, J; Herfelt, C; Svendsen, J H; Haunsø, S; Kanters, J K; Olesen, M S Clinical genetics. 27538377 2017 01;
Predicting Social Anxiety Treatment Outcome Based on Therapeutic Email Conversations. Hoogendoorn, Mark; Berger, Thomas; Schulz, Ava; Stolz, Timo; Szolovits, Peter IEEE journal of biomedical and health informatics. 27542187 2017 Sep;
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Structural asymmetries of the human cerebellum in relation to cerebral cortical asymmetries and handedness. Kavaklioglu, Tulya; Guadalupe, Tulio; Zwiers, Marcel; Marquand, Andre F; Onnink, Marten; Shumskaya, Elena; Brunner, Han; Fernandez, Guillen; Fisher, Simon E; Francks, Clyde Brain structure & function. 27566607 2016 Aug 26;
Making the cut: improved ranking and selection for large-scale inference. Henderson, Nicholas C; Newton, Michael A Journal of the Royal Statistical Society. Series B, Statistical methodology. 27570475 2016 Sep;
Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress. Papale, Ligia A; Li, Sisi; Madrid, Andy; Zhang, Qi; Chen, Li; Chopra, Pankaj; Jin, Peng; Kele?, Sündüz; Alisch, Reid S Neurobiology of disease. 27576189 2016 Dec;
Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics. Deutsch, Eric W; Sun, Zhi; Campbell, David S; Binz, Pierre-Alain; Farrah, Terry; Shteynberg, David; Mendoza, Luis; Omenn, Gilbert S; Moritz, Robert L Journal of proteome research. 27577934 2016 Nov 04;
Overview of the interactive task in BioCreative V. Wang, Qinghua; S Abdul, Shabbir; Almeida, Lara; Ananiadou, Sophia; Balderas-Martínez, Yalbi I; Batista-Navarro, Riza; Campos, David; Chilton, Lucy; Chou, Hui-Jou; Contreras, Gabriela; Cooper, Laurel; Dai, Hong-Jie; Ferrell, Barbra; Fluck, Juliane; Gama-Castro, Socorro; George, Nancy; Gkoutos, Georgios; Irin, Afroza K; Jensen, Lars J; Jimenez, Silvia; Jue, Toni R; Keseler, Ingrid; Madan, Sumit; Matos, Sérgio; McQuilton, Peter; Milacic, Marija; Mort, Matthew; Natarajan, Jeyakumar; Pafilis, Evangelos; Pereira, Emiliano; Rao, Shruti; Rinaldi, Fabio; Rothfels, Karen; Salgado, David; Silva, Raquel M; Singh, Onkar; Stefancsik, Raymund; Su, Chu-Hsien; Subramani, Suresh; Tadepally, Hamsa D; Tsaprouni, Loukia; Vasilevsky, Nicole; Wang, Xiaodong; Chatr-Aryamontri, Andrew; Laulederkind, Stanley J F; Matis-Mitchell, Sherri; McEntyre, Johanna; Orchard, Sandra; Pundir, Sangya; Rodriguez-Esteban, Raul; Van Auken, Kimberly; Lu, Zhiyong; Schaeffer, Mary; Wu, Cathy H; Hirschman, Lynette; Arighi, Cecilia N Database : the journal of biological databases and curation. 27589961 2016;
Distinct Subcortical Volume Alterations in Pediatric and Adult OCD: A Worldwide Meta- and Mega-Analysis. Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Ameis, Stephanie H; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Cheng, Yuqi; Cho, Kang Ik K; Dallaspezia, Sara; Denys, Damiaan; Fitzgerald, Kate D; Fouche, Jean-Paul; Giménez, Mònica; Gruner, Patricia; Hanna, Gregory L; Hibar, Derrek P; Hoexter, Marcelo Q; Hu, Hao; Huyser, Chaim; Ikari, Keisuke; Jahanshad, Neda; Kathmann, Norbert; Kaufmann, Christian; Koch, Kathrin; Kwon, Jun Soo; Lazaro, Luisa; Liu, Yanni; Lochner, Christine; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Menchón, José M; Minuzzi, Luciano; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswamy, Janardhanan C; Piras, Fabrizio; Piras, Federica; Pittenger, Christopher; Reddy, Y C Janardhan; Sato, Joao R; Simpson, H Blair; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stevens, Michael C; Szeszko, Philip R; Tolin, David F; Venkatasubramanian, Ganesan; Walitza, Susanne; Wang, Zhen; van Wingen, Guido A; Xu, Jian; Xu, Xiufeng; Yun, Je-Yeon; Zhao, Qing; ENIGMA OCD Working Group; Thompson, Paul M; Stein, Dan J; van den Heuvel, Odile A The American journal of psychiatry. 27609241 2017 01 01;
Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates. Sievers, Chelsie K; Zou, Luli S; Pickhardt, Perry J; Matkowskyj, Kristina A; Albrecht, Dawn M; Clipson, Linda; Bacher, Jeffery W; Pooler, B Dustin; Moawad, Fouad J; Cash, Brooks D; Reichelderfer, Mark; Vo, Tien N; Newton, Michael A; Larget, Bret R; Halberg, Richard B Gut. 27609830 2016 Sep 08;
Perspective: Beyond the genome. Leppert, John; Patel, Chirag Nature. 27626778 2016 09 15;
Surrogate-assisted feature extraction for high-throughput phenotyping. Yu, Sheng; Chakrabortty, Abhishek; Liao, Katherine P; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi Journal of the American Medical Informatics Association : JAMIA. 27632993 ;
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Cerebral amyloid is associated with greater white-matter hyperintensity accrual in cognitively normal older adults. Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNI Neurobiology of aging. 27639120 2016 12;
Conformal invariants for multiply connected surfaces: Application to landmark curve-based brain morphometry analysis. Shi, Jie; Zhang, Wen; Tang, Miao; Caselli, Richard J; Wang, Yalin Medical image analysis. 27639215 2017 Jan;
Adapting extracellular matrix proteomics for clinical studies on cardiac remodeling post-myocardial infarction. Lindsey, Merry L; Hall, Michael E; Harmancey, Romain; Ma, Yonggang Clinical proteomics. 27651752 2016;
Actigraphy features for predicting mobility disability in older adults. Kheirkhahan, Matin; Tudor-Locke, Catrine; Axtell, Robert; Buman, Matthew P; Fielding, Roger A; Glynn, Nancy W; Guralnik, Jack M; King, Abby C; White, Daniel K; Miller, Michael E; Siddique, Juned; Brubaker, Peter; Rejeski, W Jack; Ranshous, Stephen; Pahor, Marco; Ranka, Sanjay; Manini, Todd M Physiological measurement. 27653966 2016 Sep 21;
Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running. Uchida, Thomas K; Seth, Ajay; Pouya, Soha; Dembia, Christopher L; Hicks, Jennifer L; Delp, Scott L PloS one. 27656901 2016;
Just-in-Time Adaptive Interventions (JITAIs) in Mobile Health: Key Components and Design Principles for Ongoing Health Behavior Support. Nahum-Shani, Inbal; Smith, Shawna N; Spring, Bonnie J; Collins, Linda M; Witkiewitz, Katie; Tewari, Ambuj; Murphy, Susan A Annals of behavioral medicine : a publication of the Society of Behavioral Medicine. 27663578 2016 Sep 23;
Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications. Tao, Chenyang; Nichols, Thomas E; Hua, Xue; Ching, Christopher R K; Rolls, Edmund T; Thompson, Paul M; Feng, Jianfeng; Alzheimer's Disease Neuroimaging Initiative NeuroImage. 27666385 2017 Jan 01;
Quantitative magnetic resonance imaging traits as endophenotypes for genetic mapping in epilepsy. Alhusaini, Saud; Whelan, Christopher D; Sisodiya, Sanjay M; Thompson, Paul M NeuroImage. Clinical. 27672556 2016;
MeSHDD: Literature-based drug-drug similarity for drug repositioning. Brown, Adam S; Patel, Chirag J Journal of the American Medical Informatics Association : JAMIA. 27678460 2016 Sep 27;
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. Zerbino, Daniel R; Ballinger, Tracy; Paten, Benedict; Hickey, Glenn; Haussler, David BMC bioinformatics. 27687569 2016 Sep 29;
Phase i trials in melanoma: A framework to translate preclinical findings to the clinic. Kim, Eunjung; Rebecca, Vito W; Smalley, Keiran S M; Anderson, Alexander R A European journal of cancer (Oxford, England : 1990). 27689717 2016 Nov;
Novel genetic loci underlying human intracranial volume identified through genome-wide association. Adams, Hieab H H (see original citation for additional authors) Nature neuroscience. 27694991 2016 12;
Ultra-rare disruptive and damaging mutations influence educational attainment in the general population. Ganna, Andrea; Genovese, Giulio; Howrigan, Daniel P; Byrnes, Andrea; Kurki, Mitja; Zekavat, Seyedeh M; Whelan, Christopher W; Kals, Mart; Nivard, Michel G; Bloemendal, Alex; Bloom, Jonathan M; Goldstein, Jacqueline I; Poterba, Timothy; Seed, Cotton; Handsaker, Robert E; Natarajan, Pradeep; Mägi, Reedik; Gage, Diane; Robinson, Elise B; Metspalu, Andres; Salomaa, Veikko; Suvisaari, Jaana; Purcell, Shaun M; Sklar, Pamela; Kathiresan, Sekar; Daly, Mark J; McCarroll, Steven A; Sullivan, Patrick F; Palotie, Aarno; Esko, Tõnu; Hultman, Christina; Neale, Benjamin M Nature neuroscience. 27694993 2016 12;
A regulatory circuit of miR-125b/miR-20b and Wnt signalling controls glioblastoma phenotypes through FZD6-modulated pathways. Huang, Tianzhi; Alvarez, Angel A; Pangeni, Rajendra P; Horbinski, Craig M; Lu, Songjian; Kim, Sung-Hak; James, C David; J Raizer, Jeffery; A Kessler, John; Brenann, Cameron W; Sulman, Erik P; Finocchiaro, Gaetano; Tan, Ming; Nishikawa, Ryo; Lu, Xinghua; Nakano, Ichiro; Hu, Bo; Cheng, Shi-Yuan Nature communications. 27698350 2016 10 04;
Partitioning heritability analysis reveals a shared genetic basis of brain anatomy and schizophrenia. Lee, P H; Baker, J T; Holmes, A J; Jahanshad, N; Ge, T; Jung, J-Y; Cruz, Y; Manoach, D S; Hibar, D P; Faskowitz, J; McMahon, K L; de Zubicaray, G I; Martin, N H; Wright, M J; Öngür, D; Buckner, R; Roffman, J; Thompson, P M; Smoller, J W Molecular psychiatry. 27725656 2016 Dec;
Molecular Autopsy for Sudden Unexpected Death. Torkamani, Ali; Muse, Evan D; Spencer, Emily G; Rueda, Manuel; Wagner, Glenn N; Lucas, Jonathan R; Topol, Eric J JAMA. 27727376 2016 Oct 11;
Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex. Guadalupe, Tulio; Mathias, Samuel R; vanErp, Theo G M; Whelan, Christopher D; Zwiers, Marcel P; Abe, Yoshinari; Abramovic, Lucija; Agartz, Ingrid; Andreassen, Ole A; Arias-Vásquez, Alejandro; Aribisala, Benjamin S; Armstrong, Nicola J; Arolt, Volker; Artiges, Eric; Ayesa-Arriola, Rosa; Baboyan, Vatche G; Banaschewski, Tobias; Barker, Gareth; Bastin, Mark E; Baune, Bernhard T; Blangero, John; Bokde, Arun L W; Boedhoe, Premika S W; Bose, Anushree; Brem, Silvia; Brodaty, Henry; Bromberg, Uli; Brooks, Samantha; Büchel, Christian; Buitelaar, Jan; Calhoun, Vince D; Cannon, Dara M; Cattrell, Anna; Cheng, Yuqi; Conrod, Patricia J; Conzelmann, Annette; Corvin, Aiden; Crespo-Facorro, Benedicto; Crivello, Fabrice; Dannlowski, Udo; de Zubicaray, Greig I; de Zwarte, Sonja M C; Deary, Ian J; Desrivières, Sylvane; Doan, Nhat Trung; Donohoe, Gary; Dørum, Erlend S; Ehrlich, Stefan; Espeseth, Thomas; Fernández, Guillén; Flor, Herta; Fouche, Jean-Paul; Frouin, Vincent; Fukunaga, Masaki; Gallinat, Jürgen; Garavan, Hugh; Gill, Michael; Suarez, Andrea Gonzalez; Gowland, Penny; Grabe, Hans J; Grotegerd, Dominik; Gruber, Oliver; Hagenaars, Saskia; Hashimoto, Ryota; Hauser, Tobias U; Heinz, Andreas; Hibar, Derrek P; Hoekstra, Pieter J; Hoogman, Martine; Howells, Fleur M; Hu, Hao; Hulshoff Pol, Hilleke E; Huyser, Chaim; Ittermann, Bernd; Jahanshad, Neda; Jönsson, Erik G; Jurk, Sarah; Kahn, Rene S; Kelly, Sinead; Kraemer, Bernd; Kugel, Harald; Kwon, Jun Soo; Lemaitre, Herve; Lesch, Klaus-Peter; Lochner, Christine; Luciano, Michelle; Marquand, Andre F; Martin, Nicholas G; Martínez-Zalacaín, Ignacio; Martinot, Jean-Luc; Mataix-Cols, David; Mather, Karen; McDonald, Colm; McMahon, Katie L; Medland, Sarah E; Menchón, José M; Morris, Derek W; Mothersill, Omar; Maniega, Susana Munoz; Mwangi, Benson; Nakamae, Takashi; Nakao, Tomohiro; Narayanaswaamy, Janardhanan C; Nees, Frauke; Nordvik, Jan E; Onnink, A Marten H; Opel, Nils; Ophoff, Roel; Paillère Martinot, Marie-Laure; Papadopoulos Orfanos, Dimitri; Pauli, Paul; Paus, Tomá?; Poustka, Luise; Reddy, Janardhan Yc; Renteria, Miguel E; Roiz-Santiáñez, Roberto; Roos, Annerine; Royle, Natalie A; Sachdev, Perminder; Sánchez-Juan, Pascual; Schmaal, Lianne; Schumann, Gunter; Shumskaya, Elena; Smolka, Michael N; Soares, Jair C; Soriano-Mas, Carles; Stein, Dan J; Strike, Lachlan T; Toro, Roberto; Turner, Jessica A; Tzourio-Mazoyer, Nathalie; Uhlmann, Anne; Hernández, Maria Valdés; van den Heuvel, Odile A; van der Meer, Dennis; van Haren, Neeltje E M; Veltman, Dick J; Venkatasubramanian, Ganesan; Vetter, Nora C; Vuletic, Daniella; Walitza, Susanne; Walter, Henrik; Walton, Esther; Wang, Zhen; Wardlaw, Joanna; Wen, Wei; Westlye, Lars T; Whelan, Robert; Wittfeld, Katharina; Wolfers, Thomas; Wright, Margaret J; Xu, Jian; Xu, Xiufeng; Yun, Je-Yeon; Zhao, JingJing; Franke, Barbara; Thompson, Paul M; Glahn, David C; Mazoyer, Bernard; Fisher, Simon E; Francks, Clyde Brain imaging and behavior. 27738994 2017 Oct;
Early matrix metalloproteinase-9 inhibition post-myocardial infarction worsens cardiac dysfunction by delaying inflammation resolution. Iyer, Rugmani Padmanabhan; de Castro Brás, Lisandra E; Patterson, Nicolle L; Bhowmick, Manishabrata; Flynn, Elizabeth R; Asher, Majdouline; Cannon, Presley L; Deleon-Pennell, Kristine Y; Fields, Gregg B; Lindsey, Merry L Journal of molecular and cellular cardiology. 27746126 2016 Nov;
Exome chip analyses in adult attention deficit hyperactivity disorder. Zayats, T; Jacobsen, K K; Kleppe, R; Jacob, C P; Kittel-Schneider, S; Ribasés, M; Ramos-Quiroga, J A; Richarte, V; Casas, M; Mota, N R; Grevet, E H; Klein, M; Corominas, J; Bralten, J; Galesloot, T; Vasquez, A A; Herms, S; Forstner, A J; Larsson, H; Breen, G; Asherson, P; Gross-Lesch, S; Lesch, K P; Cichon, S; Gabrielsen, M B; Holmen, O L; Bau, C H D; Buitelaar, J; Kiemeney, L; Faraone, S V; Cormand, B; Franke, B; Reif, A; Haavik, J; Johansson, S Translational psychiatry. 27754487 2016 10 18;
Signal-Oriented Pathway Analyses Reveal a Signaling Complex as a Synthetic Lethal Target for p53 Mutations. Lu, Songjian; Cai, Chunhui; Yan, Gonghong; Zhou, Zhuan; Wan, Yong; Chen, Vicky; Chen, Lujia; Cooper, Gregory F; Obeid, Lina M; Hannun, Yusuf A; Lee, Adrian V; Lu, Xinghua Cancer research. 27758891 2016 Dec 01;
Publicly Available Data Provide Evidence against NR1H3 R415Q Causing Multiple Sclerosis. Minikel, Eric Vallabh; MacArthur, Daniel G Neuron. 27764668 2016 Oct 19;
Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data. Kang, Eun Yong; Martin, Lisa; Mangul, Serghei; Isvilanonda, Warin; Zou, Jennifer; Ben-David, Eyal; Han, Buhm; Lusis, Aldons J; Shifman, Sagiv; Eskin, Eleazar Genetics. 27765809 2016 Oct 07;
Causal Clustering for 1-Factor Measurement Models. Kummerfeld, Erich; Ramsey, Joseph KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 27766182 2016;
Computational pan-genomics: status, promises and challenges. Computational Pan-Genomics Consortium Briefings in bioinformatics. 27769991 2016 Oct 21;
A database of human exposomes and phenomes from the US National Health and Nutrition Examination Survey. Patel, Chirag J; Pho, Nam; McDuffie, Michael; Easton-Marks, Jeremy; Kothari, Cartik; Kohane, Isaac S; Avillach, Paul Scientific data. 27779619 2016 10 25;
A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Korthauer, Keegan D; Chu, Li-Fang; Newton, Michael A; Li, Yuan; Thomson, James; Stewart, Ron; Kendziorski, Christina Genome biology. 27782827 2016 Oct 25;
Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience. Links, Amanda E; Draper, David; Lee, Elizabeth; Guzman, Jessica; Valivullah, Zaheer; Maduro, Valerie; Lebedev, Vlad; Didenko, Maxim; Tomlin, Garrick; Brudno, Michael; Girdea, Marta; Dumitriu, Sergiu; Haendel, Melissa A; Mungall, Christopher J; Smedley, Da Frontiers in medicine. 27785453 2016;
Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis. Liao, Katherine P; Sparks, Jeffrey A; Hejblum, Boris P; Kuo, I-Hsin; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Gainer, Vivian S; Liu, Weidong; Cai, T Tony; Sokolove, Jeremy; Cai, Tianxi Arthritis & rheumatology (Hoboken, N.J.). 27792870 2017 Apr;
Objective measurement of free-living physical activity (performance) in lumbar spinal stenosis: are physical activity guidelines being met? Norden, Justin; Smuck, Matthew; Sinha, Aman; Hu, Richard; Tomkins-Lane, Christy The spine journal : official journal of the North American Spine Society. 27793759 2017 Jan;
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia A; Lennartsson, Andreas; Drabløs, Finn; Ramilowski, Jordan A; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R R; Kasukawa, Takeya; Kawaji, Hideya Nucleic acids research. 27794045 2017 Jan 04;
Abundant Inverse Regression using Sufficient Reduction and its Applications. Kim, Hyunwoo J; Smith, Brandon M; Adluru, Nagesh; Dyer, Charles R; Johnson, Sterling C; Singh, Vikas Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. 27796010 2016 Oct;
Quantifying unobserved protein-coding variants in human populations provides a roadmap for large-scale sequencing projects. Zou, James; Valiant, Gregory; Valiant, Paul; Karczewski, Konrad; Chan, Siu On; Samocha, Kaitlin; Lek, Monkol; Sunyaev, Shamil; Daly, Mark; MacArthur, Daniel G Nature communications. 27796292 2016 Oct 31;
Adaptive Signal Recovery on Graphs via Harmonic Analysis for Experimental Design in Neuroimaging. Kim, Won Hwa; Hwang, Seong Jae; Adluru, Nagesh; Johnson, Sterling C; Singh, Vikas Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. 27807594 2016 Oct;
Enabling an Open Data Ecosystem for the Neurosciences. Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, Brian Neuron. 27810004 2016 Nov 02;
Coupled Harmonic Bases for Longitudinal Characterization of Brain Networks. Hwang, Seong Jae; Adluru, Nagesh; Collins, Maxwell D; Ravi, Sathya N; Bendlin, Barbara B; Johnson, Sterling C; Singh, Vikas Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 27812274 2016 Jun-Jul;
T2-Imaging Changes in the Nigrosome-1 Relate to Clinical Measures of Parkinson's Disease. Fu, Katherine A; Nathan, Romil; Dinov, Ivo D; Li, Junning; Toga, Arthur W Frontiers in neurology. 27812347 2016;
Tensor Spectral Clustering for Partitioning Higher-order Network Structures. Benson, Austin R; Gleich, David F; Leskovec, Jure Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. 27812399 2015;
Attention-Deficit/Hyperactivity Disorder symptoms coincide with altered striatal connectivity. Oldehinkel, Marianne; Beckmann, Christian F; Pruim, Raimon H R; van Oort, Erik S B; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, Maarten Biological psychiatry. Cognitive neuroscience and neuroimaging. 27812554 2016 Jul;
Gait biomechanics in the era of data science. Ferber, Reed; Osis, Sean T; Hicks, Jennifer L; Delp, Scott L Journal of biomechanics. 27814971 2016 12 08;
Functional connectivity in cortico-subcortical brain networks underlying reward processing in attention-deficit/hyperactivity disorder. Oldehinkel, Marianne; Beckmann, Christian F; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, Maarten NeuroImage. Clinical. 27818941 2016;
Growing Wikipedia Across Languages via Recommendation. Wulczyn, Ellery; West, Robert; Zia, Leila; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 27819073 2016 Apr;
Diffusion-weighted imaging uncovers likely sources of processing-speed deficits in schizophrenia. Kochunov, Peter; Rowland, Laura M; Fieremans, Els; Veraart, Jelle; Jahanshad, Neda; Eskandar, George; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Shukla, Dinesh; Sampath, Hemalatha; Thompson, Paul M; Hong, L Elliot Proceedings of the National Academy of Sciences of the United States of America. 27834215 2016 Nov 22;
Private and Efficient Query Processing on Outsourced Genomic Databases. Ghasemi, Reza; Al Aziz, Md Momin; Mohammed, Noman; Dehkordi, Massoud Hadian; Jiang, Xiaoqian IEEE journal of biomedical and health informatics. 27834660 2017 09;
A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets. Zuo, Chandler; Chen, Kailei; Kele?, Sündüz Journal of computational biology : a journal of computational molecular cell biology. 27835030 2016 Nov 11;
Topological false discovery rates for brain mapping based on signal height. Li, Junning; Gahm, Jin Kyu; Shi, Yonggang; Toga, Arthur W NeuroImage. 27838286 ;
Bias correction in species distribution models: pooling survey and collection data for multiple species. Fithian, William; Elith, Jane; Hastie, Trevor; Keith, David A Methods in ecology and evolution. 27840673 2015 Apr;
A network-based phenotype mapping approach to identify genes that modulate drug response phenotypes. Cairns, Junmei; Ung, Choong Yong; da Rocha, Edroaldo Lummertz; Zhang, Cheng; Correia, Cristina; Weinshilboum, Richard; Wang, Liewei; Li, Hu Scientific reports. 27841317 2016 Nov 14;
Development of a dynamic computational model of social cognitive theory. Riley, William T; Martin, Cesar A; Rivera, Daniel E; Hekler, Eric B; Adams, Marc A; Buman, Matthew P; Pavel, Misha; King, Abby C Translational behavioral medicine. 27848208 2016 12;
node2vec: Scalable Feature Learning for Networks. Grover, Aditya; Leskovec, Jure KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 27853626 2016 Aug;
Interpretable Decision Sets: A Joint Framework for Description and Prediction. Lakkaraju, Himabindu; Bach, Stephen H; Jure, Leskovec KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 27853627 2016 Aug;
Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set. Li, Hui; Zhu, Yitan; Burnside, Elizabeth S; Huang, Erich; Drukker, Karen; Hoadley, Katherine A; Fan, Cheng; Conzen, Suzanne D; Zuley, Margarita; Net, Jose M; Sutton, Elizabeth; Whitman, Gary J; Morris, Elizabeth; Perou, Charles M; Ji, Yuan; Giger, Maryellen L NPJ breast cancer. 27853751 2016;
RNA-Binding Protein IGF2BP1 in Cutaneous Squamous Cell Carcinoma. Kim, TaeWon; Havighurst, Thomas; Kim, KyungMann; Hebbring, Scott J; Ye, Zhan; Aylward, Juliet; Keles, Sunduz; Xu, Yaohui G; Spiegelman, Vladimir S The Journal of investigative dermatology. 27856289 2017 Mar;
Extension of research data repository system to support direct compute access to biomedical datasets: enhancing Dataverse to support large datasets. McKinney, Bill; Meyer, Peter A; Crosas, Mercè; Sliz, Piotr Annals of the New York Academy of Sciences. 27862010 2017 Jan;
Colocalization of GWAS and eQTL Signals Detects Target Genes. Hormozdiari, Farhad; van de Bunt, Martijn; Segrè, Ayellet V; Li, Xiao; Joo, Jong Wha J; Bilow, Michael; Sul, Jae Hoon; Sankararaman, Sriram; Pasaniuc, Bogdan; Eskin, Eleazar American journal of human genetics. 27866706 2016 Dec 01;
Multimodal neuroimaging of male and female brain structure in health and disease across the life span. Jahanshad, Neda; Thompson, Paul M Journal of neuroscience research. 27870421 2017 01 02;
A review of validation strategies for computational drug repositioning. Brown, Adam S; Patel, Chirag J Briefings in bioinformatics. 27881429 2018 01 01;
3D tract-specific local and global analysis of white matter integrity in Alzheimer's disease. Jin, Yan; Huang, Chao; Daianu, Madelaine; Zhan, Liang; Dennis, Emily L; Reid, Robert I; Jack Jr, Clifford R; Zhu, Hongtu; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative Human brain mapping. 27883250 2017 Mar;
Enabling an Open Data Ecosystem for the Neurosciences. Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, Brian Neuron. 27883904 2016 Nov 23;
Genome-wide association studies of drug response and toxicity: an opportunity for genome medicine. Giacomini, Kathleen M; Yee, Sook Wah; Mushiroda, Taisei; Weinshilboum, Richard M; Ratain, Mark J; Kubo, Michiaki Nature reviews. Drug discovery. 27885282 2017 Jan;
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community. Jain, Miten; Olsen, Hugh E; Paten, Benedict; Akeson, Mark Genome biology. 27887629 2016 11 25;
PROSNET: INTEGRATING HOMOLOGY WITH MOLECULAR NETWORKS FOR PROTEIN FUNCTION PREDICTION. Wang, Sheng; Qu, Meng; Peng, Jian Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 27896959 2017;
EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY. Haynes, Winston A; Vallania, Francesco; Liu, Charles; Bongen, Erika; Tomczak, Aurelie; Andres-Terrè, Marta; Lofgren, Shane; Tam, Andrew; Deisseroth, Cole A; Li, Matthew D; Sweeney, Timothy E; Khatri, Purvesh Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 27896970 2017;
DATA SHARING AND REPRODUCIBLE CLINICAL GENETIC TESTING: SUCCESSES AND CHALLENGES. Yang, Shan; Cline, Melissa; Zhang, Can; Paten, Benedict; Lincoln, Stephen E Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 27896972 2017;
THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE. Garmire, Lana X; Gliske, Stephen; Nguyen, Quynh C; Chen, Jonathan H; Nemati, Shamim; VAN Horn, John D; Moore, Jason H; Shreffler, Carol; Dunn, Michelle Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 27897014 2016;
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements. Mi, Huaiyu; Huang, Xiaosong; Muruganujan, Anushya; Tang, Haiming; Mills, Caitlin; Kang, Diane; Thomas, Paul D Nucleic acids research. 27899595 2017 Jan 04;
The Human Phenotype Ontology in 2017. Köhler, Sebastian; Vasilevsky, Nicole A; Engelstad, Mark; Foster, Erin; McMurry, Julie; Aymé, Ségolène; Baynam, Gareth; Bello, Susan M; Boerkoel, Cornelius F; Boycott, Kym M; Brudno, Michael; Buske, Orion J; Chinnery, Patrick F; Cipriani, Valentina; Connell, Laureen E; Dawkins, Hugh J S; DeMare, Laura E; Devereau, Andrew D; de Vries, Bert B A; Firth, Helen V; Freson, Kathleen; Greene, Daniel; Hamosh, Ada; Helbig, Ingo; Hum, Courtney; Jähn, Johanna A; James, Roger; Krause, Roland; F Laulederkind, Stanley J; Lochmüller, Hanns; Lyon, Gholson J; Ogishima, Soichi; Olry, Annie; Ouwehand, Willem H; Pontikos, Nikolas; Rath, Ana; Schaefer, Franz; Scott, Richard H; Segal, Michael; Sergouniotis, Panagiotis I; Sever, Richard; Smith, Cynthia L; Straub, Volker; Thompson, Rachel; Turner, Catherine; Turro, Ernest; Veltman, Marijcke W M; Vulliamy, Tom; Yu, Jing; von Ziegenweidt, Julie; Zankl, Andreas; Züchner, Stephan; Zemojtel, Tomasz; Jacobsen, Julius O B; Groza, Tudor; Smedley, Damian; Mungall, Christopher J; Haendel, Melissa; Robinson, Peter N Nucleic acids research. 27899602 2017 Jan 04;
The ExAC browser: displaying reference data information from over 60 000 exomes. Karczewski, Konrad J; Weisburd, Ben; Thomas, Brett; Solomonson, Matthew; Ruderfer, Douglas M; Kavanagh, David; Hamamsy, Tymor; Lek, Monkol; Samocha, Kaitlin E; Cummings, Beryl B; Birnbaum, Daniel; The Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel G Nucleic acids research. 27899611 2017 Jan 04;
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Mungall, Christopher J; McMurry, Julie A; Köhler, Sebastian; Balhoff, James P; Borromeo, Charles; Brush, Matthew; Carbon, Seth; Conlin, Tom; Dunn, Nathan; Engelstad, Mark; Foster, Erin; Gourdine, J P; Jacobsen, Julius O B; Keith, Dan; Laraway, Bryan; Lewis, Suzanna E; NguyenXuan, Jeremy; Shefchek, Kent; Vasilevsky, Nicole; Yuan, Zhou; Washington, Nicole; Hochheiser, Harry; Groza, Tudor; Smedley, Damian; Robinson, Peter N; Haendel, Melissa A Nucleic acids research. 27899636 2017 01 04;
The UCSC Genome Browser database: 2017 update. Tyner, Cath; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Eisenhart, Christopher; Fischer, Clayton M; Gibson, David; Gonzalez, Jairo Navarro; Guruvadoo, Luvina; Haeussler, Maximilian; Heitner, Steve; Hinrichs, Angie S; Karolchik, Donna; Lee, Brian T; Lee, Christopher M; Nejad, Parisa; Raney, Brian J; Rosenbloom, Kate R; Speir, Matthew L; Villarreal, Chris; Vivian, John; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W James Nucleic acids research. 27899642 2017 Jan 04;
Childhood adversity impacts on brain subcortical structures relevant to depression. Frodl, Thomas; Janowitz, Deborah; Schmaal, Lianne; Tozzi, Leonardo; Dobrowolny, Henrik; Stein, Dan J; Veltman, Dick J; Wittfeld, Katharina; van Erp, Theo G M; Jahanshad, Neda; Block, Andrea; Hegenscheid, Katrin; Völzke, Henry; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Frey, Eva Maria; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Schnell, Knut; Grotegerd, Dominik; Arolt, Volker; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Zurowski, Bartosz; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Thompson, Paul M; Hibar, Derrek P; Dannlowski, Udo; Grabe, Hans J Journal of psychiatric research. 27918926 2017 Mar;
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. Deutsch, Eric W; Csordas, Attila; Sun, Zhi; Jarnuczak, Andrew; Perez-Riverol, Yasset; Ternent, Tobias; Campbell, David S; Bernal-Llinares, Manuel; Okuda, Shujiro; Kawano, Shin; Moritz, Robert L; Carver, Jeremy J; Wang, Mingxun; Ishihama, Yasushi; Bandeira, Nuno; Hermjakob, Henning; Vizcaíno, Juan Antonio Nucleic acids research. 27924013 2017 Jan 04;
Large-scale identification of patients with cerebral aneurysms using natural language processing. Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Can, Anil; Abd-El-Barr, Muhammad; Gainer, Vivian; Shadick, Nancy A; Murphy, Shawn; Cai, Tianxi; Savova, Guergana; Weiss, Scott T; Du, Rose Neurology. 27927935 2017 Jan 10;
Influence of donor age on induced pluripotent stem cells. Lo Sardo, Valentina; Ferguson, William; Erikson, Galina A; Topol, Eric J; Baldwin, Kristin K; Torkamani, Ali Nature biotechnology. 27941802 2017 Jan;
First Steps Into the Brave New Transdiscipline of Mobile Health. Spring, Bonnie; Pfammatter, Angela; Alshurafa, Nabil JAMA cardiology. 27973672 2017 Jan 01;
Heritability of the shape of subcortical brain structures in the general population. Roshchupkin, Gennady V; Gutman, Boris A; Vernooij, Meike W; Jahanshad, Neda; Martin, Nicholas G; Hofman, Albert; McMahon, Katie L; van der Lee, Sven J; van Duijn, Cornelia M; de Zubicaray, Greig I; Uitterlinden, André G; Wright, Margaret J; Niessen, Wiro J; Thompson, Paul M; Ikram, M Arfan; Adams, Hieab H H Nature communications. 27976715 2016 Dec 15;
Cardiovascular proteomics in the era of big data: experimental and computational advances. Lam, Maggie P Y; Lau, Edward; Ng, Dominic C M; Wang, Ding; Ping, Peipei Clinical proteomics. 27980500 2016;
Screening Breast MRI Outcomes in Routine Clinical Practice: Comparison to BI-RADS Benchmarks. Strigel, Roberta M; Rollenhagen, Jennifer; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie; DeMartini, Wendy B Academic radiology. 27986508 2017 Apr;
mCrave: Continuous Estimation of Craving During Smoking Cessation. Chatterjee, Soujanya; Hovsepian, Karen; Sarker, Hillol; Saleheen, Nazir; al'Absi, Mustafa; Atluri, Gowtham; Ertin, Emre; Lam, Cho; Lemieux, Andrine; Nakajima, Motohiro; Spring, Bonnie; Wetter, David W; Kumar, Santosh Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 27990501 2016 Sep;
Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers. Spagnolo, Daniel M; Gyanchandani, Rekha; Al-Kofahi, Yousef; Stern, Andrew M; Lezon, Timothy R; Gough, Albert; Meyer, Dan E; Ginty, Fiona; Sarachan, Brion; Fine, Jeffrey; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S Chakra Journal of pathology informatics. 27994939 2016;
Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome. Garlid, Anders Olav; Polson, Jennifer S; Garlid, Keith D; Hermjakob, Henning; Ping, Peipei Handbook of experimental pharmacology. 27995389 2017;
Proteomics Research in Cardiovascular Medicine and Biomarker Discovery. Lam, Maggie P Y; Ping, Peipei; Murphy, Elizabeth Journal of the American College of Cardiology. 28007144 2016 Dec 27;
Relationship of a common OXTR gene variant to brain structure and default mode network function in healthy humans. Wang, Junping; Braskie, Meredith N; Hafzalla, George W; Faskowitz, Joshua; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Yu, Chunshui; Thompson, Paul M NeuroImage. 28017919 2017 Feb 15;
Allostatic load and reduced cortical thickness in schizophrenia. Chiappelli, Joshua; Kochunov, Peter; Savransky, Anya; Fisseha, Feven; Wisner, Krista; Du, Xiaoming; Rowland, Laura M; Hong, L Elliot Psychoneuroendocrinology. 28027496 2017 Mar;
A SMART data analysis method for constructing adaptive treatment strategies for substance use disorders. Nahum-Shani, Inbal; Ertefaie, Ashkan; Lu, Xi Lucy; Lynch, Kevin G; McKay, James R; Oslin, David W; Almirall, Daniel Addiction (Abingdon, England). 28029718 2017 May;
Towards a Holistic Cortical Thickness Descriptor: Heat Kernel-Based Grey Matter Morphology Signatures. Wang, Gang; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative NeuroImage. 28033566 2017 Feb 15;
Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of Tumorigenesis. Zhou, Zhuan; Luo, Aiping; Shrivastava, Indira; He, Mingjing; Huang, Yi; Bahar, Ivet; Liu, Zhihua; Wan, Yong EBioMedicine. 28040451 2017 Feb;
Structured Matrix Completion with Applications to Genomic Data Integration. Cai, Tianxi; Cai, T Tony; Zhang, Anru Journal of the American Statistical Association. 28042188 2016;
Identifying disordered eating behaviours in adolescents: how do parent and adolescent reports differ by sex and age? Bartholdy, Savani; Allen, Karina; Hodsoll, John; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Mennigen, Eva; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike European child & adolescent psychiatry. 28050706 2017 Jun;
Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease. Mayers, Michael D; Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W Journal of proteome research. 28052195 2017 Feb 03;
Preparatory co-activation of the ankle muscles may prevent ankle inversion injuries. DeMers, Matthew S; Hicks, Jennifer L; Delp, Scott L Journal of biomechanics. 28057351 2017 Feb 08;
mSieve: Differential Behavioral Privacy in Time Series of Mobile Sensor Data. Saleheen, Nazir; Chakraborty, Supriyo; Ali, Nasir; Mahbubur Rahman, Md; Hossain, Syed Monowar; Bari, Rummana; Buder, Eugene; Srivastava, Mani; Kumar, Santosh Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 28058408 2016 Sep;
Finding Significant Stress Episodes in a Discontinuous Time Series of Rapidly Varying Mobile Sensor Data. Sarker, Hillol; Tyburski, Matthew; Rahman, Md Mahbubur; Hovsepian, Karen; Sharmin, Moushumi; Epstein, David H; Preston, Kenzie L; Furr-Holden, C Debra; Milam, Adam; Nahum-Shani, Inbal; al'Absi, Mustafa; Kumar, Santosh Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference. 28058409 2016 May;
Hyperbolic Space Sparse Coding with Its Application on Prediction of Alzheimer's Disease in Mild Cognitive Impairment. Zhang, Jie; Shi, Jie; Stonnington, Cynthia; Li, Qingyang; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 28066843 2016 Oct;
Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health. Manrai, Arjun K; Cui, Yuxia; Bushel, Pierre R; Hall, Molly; Karakitsios, Spyros; Mattingly, Carolyn J; Ritchie, Marylyn; Schmitt, Charles; Sarigiannis, Denis A; Thomas, Duncan C; Wishart, David; Balshaw, David M; Patel, Chirag J Annual review of public health. 28068484 2017 03 20;
EmptyHeaded: A Relational Engine for Graph Processing. Aberger, Christopher R; Tu, Susan; Olukotun, Kunle; Ré, Christopher Proceedings. ACM-Sigmod International Conference on Management of Data. 28077912 2016 Jun-Jul;
Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information. Li, Xiao; Dunn, Jessilyn; Salins, Denis; Zhou, Gao; Zhou, Wenyu; Schüssler-Fiorenza Rose, Sophia Miryam; Perelman, Dalia; Colbert, Elizabeth; Runge, Ryan; Rego, Shannon; Sonecha, Ria; Datta, Somalee; McLaughlin, Tracey; Snyder, Michael P PLoS biology. 28081144 2017 Jan;
Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies. Nikolova, Olga; Moser, Russell; Kemp, Christopher; Gönen, Mehmet; Margolin, Adam A Bioinformatics (Oxford, England). 28082455 2017 May 01;
Evaluating surrogate marker information using censored data. Parast, Layla; Cai, Tianxi; Tian, Lu Statistics in medicine. 28088843 2017 May 20;
Domain Adaptation Methods for Improving Lab-to-field Generalization of Cocaine Detection using Wearable ECG. Natarajan, Annamalai; Angarita, Gustavo; Gaiser, Edward; Malison, Robert; Ganesan, Deepak; Marlin, Benjamin M Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 28090605 2016 Sep;
Hierarchical Span-Based Conditional Random Fields for Labeling and Segmenting Events in Wearable Sensor Data Streams. Adams, Roy J; Saleheen, Nazir; Thomaz, Edison; Parate, Abhinav; Kumar, Santosh; Marlin, Benjamin M Proceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning. 28090606 2016 Jun;
Brain substrates of reward processing and the ?-opioid receptor: a pathway into pain? Nees, Frauke; Becker, Susanne; Millenet, Sabina; Banaschewski, Tobias; Poustka, Luise; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Desrivières, Sylvane; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Flor, Herta; IMAGEN consortium Pain. 28092323 ;
Novel genetic loci associated with hippocampal volume. Hibar, Derrek P (see original citation for additional authors) Nature communications. 28098162 2017 Jan 18;
White matter hyperintensities correlate to cognition and fiber tract integrity in older adults with HIV. Watson, Christa; Busovaca, Edgar; Foley, Jessica M; Allen, I Elaine; Schwarz, Christopher G; Jahanshad, Neda; Nir, Talia M; Esmaeili-Firidouni, Pardis; Milanini, Benedetta; Rosen, Howard; Carmichael, Owen T; Thompson, Paul M; Valcour, Victor G Journal of neurovirology. 28101804 2017 Jun;
Simultaneous Modeling of Disease Status and Clinical Phenotypes To Increase Power in Genome-Wide Association Studies. Bilow, Michael; Crespo, Fernando; Pan, Zhicheng; Eskin, Eleazar; Eyheramendy, Susana Genetics. 28132020 2017 Mar;
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling. Rice, Edward S; Kohno, Satomi; John, John St; Pham, Son; Howard, Jonathan; Lareau, Liana F; O'Connell, Brendan L; Hickey, Glenn; Armstrong, Joel; Deran, Alden; Fiddes, Ian; Platt 2nd, Roy N; Gresham, Cathy; McCarthy, Fiona; Kern, Colin; Haan, David; Phan, Tan; Schmidt, Carl; Sanford, Jeremy R; Ray, David A; Paten, Benedict; Guillette Jr, Louis J; Green, Richard E Genome research. 28137821 2017 May;
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Griffith, Malachi; Spies, Nicholas C; Krysiak, Kilannin; McMichael, Joshua F; Coffman, Adam C; Danos, Arpad M; Ainscough, Benjamin J; Ramirez, Cody A; Rieke, Damian T; Kujan, Lynzey; Barnell, Erica K; Wagner, Alex H; Skidmore, Zachary L; Wollam, Amber; Liu, Connor J; Jones, Martin R; Bilski, Rachel L; Lesurf, Robert; Feng, Yan-Yang; Shah, Nakul M; Bonakdar, Melika; Trani, Lee; Matlock, Matthew; Ramu, Avinash; Campbell, Katie M; Spies, Gregory C; Graubert, Aaron P; Gangavarapu, Karthik; Eldred, James M; Larson, David E; Walker, Jason R; Good, Benjamin M; Wu, Chunlei; Su, Andrew I; Dienstmann, Rodrigo; Margolin, Adam A; Tamborero, David; Lopez-Bigas, Nuria; Jones, Steven J M; Bose, Ron; Spencer, David H; Wartman, Lukas D; Wilson, Richard K; Mardis, Elaine R; Griffith, Obi L Nature genetics. 28138153 2017 Jan 31;
Towards Globally Optimal Crowdsourcing Quality Management: The Uniform Worker Setting. Das Sarma, Akash; Parameswaran, Aditya; Widom, Jennifer Proceedings. ACM-Sigmod International Conference on Management of Data. 28149000 2016 Jun-Jul;
Decibel: The Relational Dataset Branching System. Maddox, Michael; Goehring, David; Elmore, Aaron J; Madden, Samuel; Parameswaran, Aditya; Deshpande, Amol Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 28149668 2016 May;
Brain imaging genetics in ADHD and beyond - Mapping pathways from gene to disorder at different levels of complexity. Klein, Marieke; Onnink, Marten; van Donkelaar, Marjolein; Wolfers, Thomas; Harich, Benjamin; Shi, Yan; Dammers, Janneke; Arias-Vásquez, Alejandro; Hoogman, Martine; Franke, Barbara Neuroscience and biobehavioral reviews. 28159610 2017 Sep;
GMove: Group-Level Mobility Modeling Using Geo-Tagged Social Media. Zhang, Chao; Zhang, Keyang; Yuan, Quan; Zhang, Luming; Hanratty, Tim; Han, Jiawei KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 28163978 2016 Aug;
DPClass: An Effective but Concise Discriminative Patterns-Based Classification Framework. Shang, Jingbo; Tong, Wenzhu; Peng, Jian; Han, Jiawei Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. 28163983 2016 May;
Phantom PAINS: Problems with the Utility of Alerts for Pan-Assay INterference CompoundS. Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander Journal of chemical information and modeling. 28165734 2017 Mar 27;
Effect of Physical Activity on Self-Reported Disability in Older Adults: Results from the LIFE Study. Manini, Todd M; Beavers, Daniel P; Pahor, Marco; Guralnik, Jack M; Spring, Bonnie; Church, Timothy S; King, Abby C; Folta, Sara C; Glynn, Nancy W; Marsh, Anthony P; Gill, Thomas M; LIFE study investigators Journal of the American Geriatrics Society. 28168689 2017 May;
MACFP: Maximal Approximate Consecutive Frequent Pattern Mining under Edit Distance. Shang, Jingbo; Peng, Jian; Han, Jiawei Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. 28174677 2016 May;
Mining Discriminative Patterns to Predict Health Status for Cardiopulmonary Patients. Cheng, Qian; Shang, Jingbo; Juen, Joshua; Han, Jiawei; Schatz, Bruce ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. 28174760 2016 Oct;
Network-level assessment of reward-related activation in patients with ADHD and healthy individuals. von Rhein, Daniel; Beckmann, Christian F; Franke, Barbara; Oosterlaan, Jaap; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina A; Luman, Marjolein; Faraone, Stephen V; Cools, Roshan; Buitelaar, Jan K; Mennes, Maarten Human brain mapping. 28176434 2017 05;
Squish: Near-Optimal Compression for Archival of Relational Datasets. Gao, Yihan; Parameswaran, Aditya KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 28180028 2016 Aug;
Independent value added by diffusion MRI for prediction of cognitive function in older adults. Scott, Julia A; Tosun, Duygu; Braskie, Meredith N; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNI NeuroImage. Clinical. 28180075 2017;
Predictive Modeling of Physician-Patient Dynamics That Influence Sleep Medication Prescriptions and Clinical Decision-Making. Beam, Andrew L; Kartoun, Uri; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Shaw, Stanley Y; Kohane, Isaac S Scientific reports. 28181568 2017 Feb 09;
Dual PI3K/mTOR Inhibition in Colorectal Cancers withAPCandPIK3CAMutations. Foley, Tyler M; Payne, Susan N; Pasch, Cheri A; Yueh, Alex E; Van De Hey, Dana R; Korkos, Demetra P; Clipson, Linda; Maher, Molly E; Matkowskyj, Kristina A; Newton, Michael A; Deming, Dustin A Molecular cancer research : MCR. 28184015 2017 02 09;
Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples. Kosmicki, Jack A; Samocha, Kaitlin E; Howrigan, Daniel P; Sanders, Stephan J; Slowikowski, Kamil; Lek, Monkol; Karczewski, Konrad J; Cutler, David J; Devlin, Bernie; Roeder, Kathryn; Buxbaum, Joseph D; Neale, Benjamin M; MacArthur, Daniel G; Wall, Dennis P; Robinson, Elise B; Daly, Mark J Nature genetics. 28191890 2017 Apr;
The Exposome Research Paradigm: an Opportunity to Understand the Environmental Basis for Human Health and Disease. Buck Louis, Germaine M; Smarr, Melissa M; Patel, Chirag J Current environmental health reports. 28194614 2017 Mar;
Causal Discovery from Subsampled Time Series Data by Constraint Optimization. Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, David JMLR workshop and conference proceedings. 28203316 2016 Aug;
Dynamics of Large Multi-View Social Networks: Synergy, Cannibalization and Cross-View Interplay. Shi, Yu; Kim, Myunghwan; Chatterjee, Shaunak; Tiwari, Mitul; Ghosh, Souvik; Rosales, Rómer KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 28203486 2016 Aug;
Interactive Data Exploration with Smart Drill-Down. Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, Aditya Proceedings. International Conference on Data Engineering. 28210096 2016 May;
FacetGist: Collective Extraction of Document Facets in Large Technical Corpora. Siddiqui, Tarique; Ren, Xiang; Parameswaran, Aditya; Han, Jiawei Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management. 28210517 2016 Oct;
A general statistical framework for subgroup identification and comparative treatment scoring. Chen, Shuai; Tian, Lu; Cai, Tianxi; Yu, Menggang Biometrics. 28211943 2017 Dec;
Septic Cardiomyopathy: Getting to the Heart of the Matter. Sweeney, Timothy E; Khatri, Purvesh Critical care medicine. 28212222 2017 Mar;
Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx). Solbrig, Harold R; Prud'hommeaux, Eric; Grieve, Grahame; McKenzie, Lloyd; Mandel, Joshua C; Sharma, Deepak K; Jiang, Guoqian Journal of biomedical informatics. 28213144 2017 03;
Estimating Causal Effects with Ancestral Graph Markov Models. Malinsky, Daniel; Spirtes, Peter JMLR workshop and conference proceedings. 28217244 2016 Aug;
Mapping DNA methylation with high-throughput nanopore sequencing. Rand, Arthur C; Jain, Miten; Eizenga, Jordan M; Musselman-Brown, Audrey; Olsen, Hugh E; Akeson, Mark; Paten, Benedict Nature methods. 28218897 2017 Apr;
Subcortical brain volume differences in participants with attention deficit hyperactivity disorder in children and adults: a cross-sectional mega-analysis. Hoogman, Martine; Bralten, Janita; Hibar, Derrek P; Mennes, Maarten; Zwiers, Marcel P; Schweren, Lizanne S J; van Hulzen, Kimm J E; Medland, Sarah E; Shumskaya, Elena; Jahanshad, Neda; Zeeuw, Patrick de; Szekely, Eszter; Sudre, Gustavo; Wolfers, Thomas; Onnink, Alberdingk M H; Dammers, Janneke T; Mostert, Jeanette C; Vives-Gilabert, Yolanda; Kohls, Gregor; Oberwelland, Eileen; Seitz, Jochen; Schulte-Rüther, Martin; Ambrosino, Sara; Doyle, Alysa E; Høvik, Marie F; Dramsdahl, Margaretha; Tamm, Leanne; van Erp, Theo G M; Dale, Anders; Schork, Andrew; Conzelmann, Annette; Zierhut, Kathrin; Baur, Ramona; McCarthy, Hazel; Yoncheva, Yuliya N; Cubillo, Ana; Chantiluke, Kaylita; Mehta, Mitul A; Paloyelis, Yannis; Hohmann, Sarah; Baumeister, Sarah; Bramati, Ivanei; Mattos, Paulo; Tovar-Moll, Fernanda; Douglas, Pamela; Banaschewski, Tobias; Brandeis, Daniel; Kuntsi, Jonna; Asherson, Philip; Rubia, Katya; Kelly, Clare; Martino, Adriana Di; Milham, Michael P; Castellanos, Francisco X; Frodl, Thomas; Zentis, Mariam; Lesch, Klaus-Peter; Reif, Andreas; Pauli, Paul; Jernigan, Terry L; Haavik, Jan; Plessen, Kerstin J; Lundervold, Astri J; Hugdahl, Kenneth; Seidman, Larry J; Biederman, Joseph; Rommelse, Nanda; Heslenfeld, Dirk J; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Polier, Georg von; Konrad, Kerstin; Vilarroya, Oscar; Ramos-Quiroga, Josep Antoni; Soliva, Joan Carles; Durston, Sarah; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Thompson, Paul M; Franke, Barbara The lancet. Psychiatry. 28219628 2017 Apr;
Chemoproteomic profiling and discovery of protein electrophiles in human cells. Matthews, Megan L; He, Lin; Horning, Benjamin D; Olson, Erika J; Correia, Bruno E; Yates 3rd, John R; Dawson, Philip E; Cravatt, Benjamin F Nature chemistry. 28221344 2017 Mar;
Representing Documents via Latent Keyphrase Inference. Liu, Jialu; Ren, Xiang; Shang, Jingbo; Cassidy, Taylor; Voss, Clare R; Han, Jiawei Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 28229132 2016 Apr;
Pathogenic ASXL1 somatic variants in reference databases complicate germline variant interpretation for Bohring-Opitz Syndrome. Carlston, Colleen M; O'Donnell-Luria, Anne H; Underhill, Hunter R; Cummings, Beryl B; Weisburd, Ben; Minikel, Eric V; Birnbaum, Daniel P; Exome Aggregation Consortium; Tvrdik, Tatiana; MacArthur, Daniel G; Mao, Rong Human mutation. 28229513 2017 May;
Biologically Relevant Heterogeneity: Metrics and Practical Insights. Gough, Albert; Stern, Andrew M; Maier, John; Lezon, Timothy; Shun, Tong-Ying; Chennubhotla, Chakra; Schurdak, Mark E; Haney, Steven A; Taylor, D Lansing SLAS discovery. 28231035 2017 Mar;
Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group. BRAINS (Brain Imaging in Normal Subjects) Expert Working Group; Shenkin, Susan D; Pernet, Cyril; Nichols, Thomas E; Poline, Jean-Baptiste; Matthews, Paul M; van der Lugt, Aad; Mackay, Clare; Lanyon, Linda; Mazoyer, Bernard; Boardman, James P; Thompson, Paul M; Fox, Nick; Marcus, Daniel S; Sheikh, Aziz; Cox, Simon R; Anblagan, Devasuda; Job, Dominic E; Dickie, David Alexander; Rodriguez, David; Wardlaw, Joanna M NeuroImage. 28232121 2017 Jun;
Data-Driven Contextual Valence Shifter Quantification for Multi-Theme Sentiment Analysis. Yu, Hongkun; Shang, Jingbo; Hsu, Meichun; Castellanos, Malú; Han, Jiawei Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management. 28232874 2016 Oct;
Effects of dopaminergic genes, prenatal adversities, and their interaction on attention-deficit/hyperactivity disorder and neural correlates of response inhibition. van der Meer, Dennis; Hartman, Catharina A; van Rooij, Daan; Franke, Barbara; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Buitelaar, Jan K; Hoekstra, Pieter J Journal of psychiatry & neuroscience : JPN. 28234207 2017 Mar;
Physical performance analysis: A new approach to assessing free-living physical activity in musculoskeletal pain and mobility-limited populations. Smuck, Matthew; Tomkins-Lane, Christy; Ith, Ma Agnes; Jarosz, Renata; Kao, Ming-Chih Jeffrey PloS one. 28235039 2017;
Inattention and Reaction Time Variability Are Linked to Ventromedial Prefrontal Volume in Adolescents. Albaugh, Matthew D; Orr, Catherine; Chaarani, Bader; Althoff, Robert R; Allgaier, Nicholas; D'Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Penttila, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra S Biological psychiatry. 28237458 2017 Nov 01;
Domain Adaptation with Conditional Transferable Components. Gong, Mingming; Zhang, Kun; Liu, Tongliang; Tao, Dacheng; Glymour, Clark; Schölkopf, Bernhard JMLR workshop and conference proceedings. 28239433 2016 Jun;
A Hybrid Causal Search Algorithm for Latent Variable Models. Ogarrio, Juan Miguel; Spirtes, Peter; Ramsey, Joe JMLR workshop and conference proceedings. 28239434 2016 Aug;
Reproducibility of tract-based white matter microstructural measures using the ENIGMA-DTI protocol. Acheson, Ashley; Wijtenburg, S Andrea; Rowland, Laura M; Winkler, Anderson; Mathias, Charles W; Hong, L Elliot; Jahanshad, Neda; Patel, Binish; Thompson, Paul M; McGuire, Stephen A; Sherman, Paul M; Kochunov, Peter; Dougherty, Donald M Brain and behavior. 28239525 2017 02;
Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation. Rahmani, Elior; Zaitlen, Noah; Baran, Yael; Eng, Celeste; Hu, Donglei; Galanter, Joshua; Oh, Sam; Burchard, Esteban G; Eskin, Eleazar; Zou, James; Halperin, Eran Nature methods. 28245214 2017 Feb 28;
Reactome pathway analysis: a high-performance in-memory approach. Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Forner, Oscar; Marin-Garcia, Pablo; Arnau, Vicente; D'Eustachio, Peter; Stein, Lincoln; Hermjakob, Henning BMC bioinformatics. 28249561 2017 Mar 02;
Analytic Complexity and Challenges in Identifying Mixtures of Exposures Associated with Phenotypes in the Exposome Era. Patel, Chirag J Current epidemiology reports. 28251040 2017;
Mammography Screening: Gaps in Patient's and Physician's Needs for Shared Decision-Making. DuBenske, Lori L; Schrager, Sarina; McDowell, Helene; Wilke, Lee G; Trentham-Dietz, Amy; Burnside, Elizabeth S The breast journal. 28252231 2017 Mar;
Latent Variable Graphical Model Selection using Harmonic Analysis: Applications to the Human Connectome Project (HCP). Kim, Won Hwa; Kim, Hyunwoo J; Adluru, Nagesh; Singh, Vikas Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 28255221 2016 Jun;
Fractional anisotropy derived from the diffusion tensor distribution function boosts power to detect Alzheimer's disease deficits. Nir, Talia M; Jahanshad, Neda; Villalon-Reina, Julio E; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Zhan, Liang; Leow, Alex D; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Diseaase Neuroimaginng Initiative (ADNI) Magnetic resonance in medicine. 28266059 2017 Dec;
An Extended SNOMED CT Concept Model for Observations in Molecular Genetics. Campbell, James R; Talmon, Geoffrey; Cushman-Vokoun, Allison; Karlsson, Daniel; Scott Campbell, W AMIA ... Annual Symposium proceedings. AMIA Symposium. 28269830 2016;
Modeling the Temporal Evolution of Postoperative Complications. Feld, Shara I; Cobian, Alexander G; Tevis, Sarah E; Kennedy, Gregory D; Craven, Mark W AMIA ... Annual Symposium proceedings. AMIA Symposium. 28269851 2016;
Sequence robust association test for familial data. Dai, Wei; Yang, Ming; Wang, Chaolong; Cai, Tianxi Biometrics. 28273695 2017 09;
Measurement Error and Causal Discovery. Scheines, Richard; Ramsey, Joseph CEUR workshop proceedings. 28280453 2016 Jun;
HSPA5 Gene encoding Hsp70 chaperone BiP in the endoplasmic reticulum. Wang, Jie; Lee, Jessica; Liem, David; Ping, Peipei Gene. 28286085 2017 Jun 30;
Laissez-Faire : Fully Asymmetric Backscatter Communication. Hu, Pan; Zhang, Pengyu; Ganesan, Deepak Proceedings of ACM SIGCOMM ... Conference. ACM SIGCOMM Conference. 28286885 2015 Aug;
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Augmented estimation for t-year survival with censored regression models. Zheng, Yu; Cai, Tianxi Biometrics. 28294286 2017 Dec;
Diverging white matter trajectories in children after traumatic brain injury: The RAPBI study. Dennis, Emily L; Rashid, Faisal; Ellis, Monica U; Babikian, Talin; Vlasova, Roza M; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F Neurology. 28298549 2017 Apr 11;
The impact of aging on cardiac extracellular matrix. Meschiari, Cesar A; Ero, Osasere Kelvin; Pan, Haihui; Finkel, Toren; Lindsey, Merry L GeroScience. 28299638 2017 Feb;
Extracting Databases from Dark Data with DeepDive. Zhang, Ce; Shin, Jaeho; Ré, Christopher; Cafarella, Michael; Niu, Feng Proceedings. ACM-Sigmod International Conference on Management of Data. 28316365 2016 Jun-Jul;
Binary Classifier Calibration using an Ensemble of Near Isotonic Regression Models. Naeini, Mahdi Pakdaman; Cooper, Gregory F Proceedings. IEEE International Conference on Data Mining. 28316511 2016 Dec;
Computational Drug Repositioning Using Continuous Self-Controlled Case Series. Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, David KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 28316874 2016 Aug;
Programming and Runtime Support to Blaze FPGA Accelerator Deployment at Datacenter Scale. Huang, Muhuan; Wu, Di; Yu, Cody Hao; Fang, Zhenman; Interlandi, Matteo; Condie, Tyson; Cong, Jason Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). 28317049 2016 Oct;
Functional Neuroimaging Predictors of Self-Reported Psychotic Symptoms in Adolescents. Bourque, Josiane; Spechler, Philip A; Potvin, Stéphane; Whelan, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère-Martinot, Marie-Laure; McEwen, Sarah C; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Conrod, Patricia J; IMAGEN Consortium The American journal of psychiatry. 28320226 2017 06 01;
Liberal Entity Extraction: Rapid Construction of Fine-Grained Entity Typing Systems. Huang, Lifu; May, Jonathan; Pan, Xiaoman; Ji, Heng; Ren, Xiang; Han, Jiawei; Zhao, Lin; Hendler, James A Big data. 28328252 2017 03;
Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images. Nguyen, Luong; Tosun, Akif Burak; Fine, Jeffrey L; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S Chakra IEEE transactions on medical imaging. 28328502 2017 Jul;
Network analysis: a novel method for mapping neonatal acute transport patterns in California. Kunz, S N; Zupancic, J A F; Rigdon, J; Phibbs, C S; Lee, H C; Gould, J B; Leskovec, J; Profit, J Journal of perinatology : official journal of the California Perinatal Association. 28333155 2017 Jun;
Use of WHONET-SaTScan system for simulated real-time detection of antimicrobial resistance clusters in a hospital in Italy, 2012 to 2014. Natale, Alessandra; Stelling, John; Meledandri, Marcello; Messenger, Louisa A; D'Ancona, Fortunato Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. 28333615 2017 Mar 16;
Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings. Sauerwald, Natalie; Zhang, She; Kingsford, Carl; Bahar, Ivet Nucleic acids research. 28334818 2017 Apr 20;
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. Raisaro, Jean Louis; Tramèr, Florian; Ji, Zhanglong; Bu, Diyue; Zhao, Yongan; Carey, Knox; Lloyd, David; Sofia, Heidi; Baker, Dixie; Flicek, Paul; Shringarpure, Suyash; Bustamante, Carlos; Wang, Shuang; Jiang, Xiaoqian; Ohno-Machado, Lucila; Tang, Haixu; Wang, XiaoFeng; Hubaux, Jean-Pierre Journal of the American Medical Informatics Association : JAMIA. 28339683 2017 Jul 01;
Muscle-tendon mechanics explain unexpected effects of exoskeleton assistance on metabolic rate during walking. Jackson, Rachel W; Dembia, Christopher L; Delp, Scott L; Collins, Steven H The Journal of experimental biology. 28341663 2017 Jun 01;
Privacy and Security in Mobile Health: A Research Agenda. Kotz, David; Gunter, Carl A; Kumar, Santosh; Weiner, Jonathan P Computer. 28344359 2016 Jun;
DeepDive: Declarative Knowledge Base Construction. De Sa, Christopher; Ratner, Alex; Ré, Christopher; Shin, Jaeho; Wang, Feiran; Wu, Sen; Zhang, Ce SIGMOD record. 28344371 2016 Mar;
Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much. He, Bryan; De Sa, Christopher; Mitliagkas, Ioannis; Ré, Christopher Advances in neural information processing systems. 28344429 2016;
Control Engineering Methods for the Design of Robust Behavioral Treatments. Bekiroglu, Korkut; Lagoa, Constantino; Murphy, Suzan A; Lanza, Stephanie T IEEE transactions on control systems technology : a publication of the IEEE Control Systems Society. 28344431 2017 May;
Ensuring Rapid Mixing and Low Bias for Asynchronous Gibbs Sampling. De Sa, Christopher; Olukotun, Kunle; Ré, Christopher JMLR workshop and conference proceedings. 28344730 2016;
The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows. O'Connor, Brian D; Yuen, Denis; Chung, Vincent; Duncan, Andrew G; Liu, Xiang Kun; Patricia, Janice; Paten, Benedict; Stein, Lincoln; Ferretti, Vincent F1000Research. 28344774 2017;
SNAP: A General Purpose Network Analysis and Graph Mining Library. Leskovec, Jure; Sosi?, Rok ACM transactions on intelligent systems and technology. 28344853 2016 Oct;
Large-scale Analysis of Counseling Conversations: An Application of Natural Language Processing to Mental Health. Althoff, Tim; Clark, Kevin; Leskovec, Jure Transactions of the Association for Computational Linguistics. 28344978 2016;
Online Actions with Offline Impact: How Online Social Networks Influence Online and Offline User Behavior. Althoff, Tim; Jindal, Pranav; Leskovec, Jure Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining. 28345078 2017 Feb;
Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice. Saul, Michael C; Seward, Christopher H; Troy, Joseph M; Zhang, Huimin; Sloofman, Laura G; Lu, Xiaochen; Weisner, Patricia A; Caetano-Anolles, Derek; Sun, Hao; Zhao, Sihai Dave; Chandrasekaran, Sriram; Sinha, Saurabh; Stubbs, Lisa Genome research. 28356321 2017 06;
Binary Classifier Calibration Using an Ensemble of Linear Trend Estimation. Naeini, Mahdi Pakdaman; Cooper, Gregory F Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. 28357158 2016 May;
Genome graphs and the evolution of genome inference. Paten, Benedict; Novak, Adam M; Eizenga, Jordan M; Garrison, Erik Genome research. 28360232 2017 May;
Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine. Ping, Peipei; Watson, Karol; Han, Jiawei; Bui, Alex Circulation research. 28360346 2017 Mar 31;
Revealing common disease mechanisms shared by tumors of different tissues of origin through semantic representation of genomic alterations and topic modeling. Chen, Vicky; Paisley, John; Lu, Xinghua BMC genomics. 28361690 2017 03 14;
An algorithm for direct causal learning of influences on patient outcomes. Rathnam, Chandramouli; Lee, Sanghoon; Jiang, Xia Artificial intelligence in medicine. 28363452 2017 Jan;
Cardiac Fibroblast Activation Post-Myocardial Infarction: Current Knowledge Gaps. Ma, Yonggang; Iyer, Rugmani Padmanabhan; Jung, Mira; Czubryt, Michael P; Lindsey, Merry L Trends in pharmacological sciences. 28365093 2017 May;
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Putman, Tim E; Lelong, Sebastien; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Diesh, Colin; Dunn, Nathan; Munoz-Torres, Monica; Stupp, Gregory S; Wu, Chunlei; Su, Andrew I; Good, Benjamin M Database : the journal of biological databases and curation. 28365742 2017 Jan 01;
Envisioning the Future of 'Big Data' Biomedicine. Bui, Alex A T; Darrell Van Horn, John; NIH BD2K Centers Consortium Journal of biomedical informatics. 28366789 2017 Mar 30;
Positive symptoms associate with cortical thinning in the superior temporal gyrus via the ENIGMA Schizophrenia consortium. Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; Van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Mørch-Johnsen, L; Faerden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Preda, A; De Rossi, P; Piras, F; Banaj, N; Ciullo, V; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, S Acta psychiatrica Scandinavica. 28369804 2017 May;
Structuring supplemental materials in support of reproducibility. Greenbaum, Dov; Rozowsky, Joel; Stodden, Victoria; Gerstein, Mark Genome biology. 28381262 2017 Apr 05;
Mutation of WIF1: a potential novel cause of a Nail-Patella-like disorder. Jones, Marilyn C; Topol, Sarah E; Rueda, Manuel; Oliveira, Glenn; Phillips, Tierney; Spencer, Emily G; Torkamani, Ali Genetics in medicine : official journal of the American College of Medical Genetics. 28383544 2017 Oct;
Combining clinical and genomics queries using i2b2 - Three methods. Murphy, Shawn N; Avillach, Paul; Bellazzi, Riccardo; Phillips, Lori; Gabetta, Matteo; Eran, Alal; McDuffie, Michael T; Kohane, Isaac S PloS one. 28388645 2017;
Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. Baker, K S; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, H M; Guzmán-Verri, C; Mather, A E; Diaz Velasco, S; Zamudio Rojas, M L; Forbester, J L; Connor, T R; Keddy, K H; Smith, A M; López de Delgado, E A; An Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 28389276 2017 Nov;
Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data. Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, David IJCAI : proceedings of the conference. 28392671 2016 Jul;
Shape Analysis with Hyperbolic Wasserstein Distance. Shi, Jie; Zhang, Wen; Wang, Yalin Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 28392672 2016 Jun;
A million variables and more: the Fast Greedy Equivalence Search algorithm for learning high-dimensional graphical causal models, with an application to functional magnetic resonance images. Ramsey, Joseph; Glymour, Madelyn; Sanchez-Romero, Ruben; Glymour, Clark International journal of data science and analytics. 28393106 2017 Mar;
EFhd2/Swiprosin-1 is a common genetic determinator for sensation-seeking/low anxiety and alcohol addiction. Mielenz, D; Reichel, M; Jia, T; Quinlan, E B; Stöckl, T; Mettang, M; Zilske, D; Kirmizi-Alsan, E; Schönberger, P; Praetner, M; Huber, S E; Amato, D; Schwarz, M; Purohit, P; Brachs, S; Spranger, J; Hess, A; Büttner, C; Ekici, A B; Perez-Branguli, F; Winner, B; Rauschenberger, V; Banaschewski, T; Bokde, A L W; Büchel, C; Conrod, P J; Desrivières, S; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Lemaitre, H; Nees, F; Paus, T; Smolka, M N; IMAGEN Consortium; Schambony, A; Bäuerle, T; Eulenburg, V; Alzheimer, C; Lourdusamy, A; Schumann, G; Müller, C P Molecular psychiatry. 28397836 2018 May;
Toil enables reproducible, open source, big biomedical data analyses. Vivian, John; Rao, Arjun Arkal; Nothaft, Frank Austin; Ketchum, Christopher; Armstrong, Joel; Novak, Adam; Pfeil, Jacob; Narkizian, Jake; Deran, Alden D; Musselman-Brown, Audrey; Schmidt, Hannes; Amstutz, Peter; Craft, Brian; Goldman, Mary; Rosenbloom, Kate; Cline, Melissa; O'Connor, Brian; Hanna, Megan; Birger, Chet; Kent, W James; Patterson, David A; Joseph, Anthony D; Zhu, Jingchun; Zaranek, Sasha; Getz, Gad; Haussler, David; Paten, Benedict Nature biotechnology. 28398314 2017 Apr 11;
Omicseq: a web-based search engine for exploring omics datasets. Sun, Xiaobo; Pittard, William S; Xu, Tianlei; Chen, Li; Zwick, Michael E; Jiang, Xiaoqian; Wang, Fusheng; Qin, Zhaohui S Nucleic acids research. 28402462 2017 07 03;
Optimizing Interactive Development of Data-Intensive Applications. Interlandi, Matteo; Tetali, Sai Deep; Gulzar, Muhammad Ali; Noor, Joseph; Condie, Tyson; Kim, Miryung; Millstein, Todd Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). 28405637 2016 Oct;
Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis. Agniel, Denis; Cai, Tianxi Biometrics. 28407213 2017 Dec;
Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides? Alves, Vinicius M; Muratov, Eugene N; Zakharov, Alexey; Muratov, Nail N; Andrade, Carolina H; Tropsha, Alexander Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association. 28412406 2017 Apr 12;
Matrix Metalloproteinases in Myocardial Infarction and Heart Failure. DeLeon-Pennell, Kristine Y; Meschiari, Cesar A; Jung, Mira; Lindsey, Merry L Progress in molecular biology and translational science. 28413032 2017;
Noise-induced symmetry breaking far from equilibrium and the emergence of biological homochirality. Jafarpour, Farshid; Biancalani, Tommaso; Goldenfeld, Nigel Physical review. E. 28415353 2017 Mar;
SCnorm: robust normalization of single-cell RNA-seq data. Bacher, Rhonda; Chu, Li-Fang; Leng, Ning; Gasch, Audrey P; Thomson, James A; Stewart, Ron M; Newton, Michael; Kendziorski, Christina Nature methods. 28418000 2017 Jun;
Validation of the Sepsis MetaScore for Diagnosis of Neonatal Sepsis. Sweeney, Timothy E; Wynn, James L; Cernada, María; Serna, Eva; Wong, Hector R; Baker, Henry V; Vento, Máximo; Khatri, Purvesh Journal of the Pediatric Infectious Diseases Society. 28419265 2017 Apr 13;
Progressive Dictionary Learning with Hierarchical Predictive Structure for Scalable Video Coding. Dai, Wenrui; Shen, Yangmei; Xiong, Hongkai; Jiang, Xiaoqian; Zou, Junni; Taubman, David IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. 28422683 2017 Apr 12;
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. Roy, Sushmita; Sridharan, Rupa Genome research. 28424352 2017 Jul;
Association of Patient Age With Outcomes of Current-Era, Large-Scale Screening Mammography: Analysis of Data From the National Mammography Database. Lee, Cindy S; Sengupta, Debapriya; Bhargavan-Chatfield, Mythreyi; Sickles, Edward A; Burnside, Elizabeth S; Zuley, Margarita L JAMA oncology. 28426842 2017 Aug 01;
Emerging Global Initiatives in Neurogenetics: The Enhancing Neuroimaging Genetics through Meta-analysis (ENIGMA) Consortium. Bearden, Carrie E; Thompson, Paul M Neuron. 28426957 2017 Apr 19;
Computer-aided discovery of two novel chalcone-like compounds active and selective against Leishmania infantum. Gomes, Marcelo N; Alcântara, Laura M; Neves, Bruno J; Melo-Filho, Cleber C; Freitas-Junior, Lucio H; Moraes, Carolina B; Ma, Rui; Franzblau, Scott G; Muratov, Eugene; Andrade, Carolina Horta Bioorganic & medicinal chemistry letters. 28434763 2017 Jun 01;
The C677T variant in MTHFR modulates associations between brain integrity, mood, and cognitive functioning in old age. Roussotte, Florence F; Hua, Xue; Narr, Katherine L; Small, Gary W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative Biological psychiatry. Cognitive neuroscience and neuroimaging. 28435933 2017 Apr;
IL-10 improves cardiac remodeling after myocardial infarction by stimulating M2 macrophage polarization and fibroblast activation. Jung, Mira; Ma, Yonggang; Iyer, Rugmani Padmanabhan; DeLeon-Pennell, Kristine Y; Yabluchanskiy, Andriy; Garrett, Michael R; Lindsey, Merry L Basic research in cardiology. 28439731 2017 May;
Flexible Analog Search with Kernel PCA Embedded Molecule Vectors. Rensi, Stefano; Altman, Russ B Computational and structural biotechnology journal. 28458783 2017;
Cortical abnormalities in bipolar disorder: an MRI analysis of 6503 individuals from the ENIGMA Bipolar Disorder Working Group. Hibar, D P; Westlye, L T; Doan, N T; Jahanshad, N; Cheung, J W; Ching, C R K; Versace, A; Bilderbeck, A C; Uhlmann, A; Mwangi, B; Krämer, B; Overs, B; Hartberg, C B; Abé, C; Dima, D; Grotegerd, D; Sprooten, E; Bøen, E; Jimenez, E; Howells, F M; Delvecchio, G; Temmingh, H; Starke, J; Almeida, J R C; Goikolea, J M; Houenou, J; Beard, L M; Rauer, L; Abramovic, L; Bonnin, M; Ponteduro, M F; Keil, M; Rive, M M; Yao, N; Yalin, N; Najt, P; Rosa, P G; Redlich, R; Trost, S; Hagenaars, S; Fears, S C; Alonso-Lana, S; van Erp, T G M; Nickson, T; Chaim-Avancini, T M; Meier, T B; Elvsåshagen, T; Haukvik, U K; Lee, W H; Schene, A H; Lloyd, A J; Young, A H; Nugent, A; Dale, A M; Pfennig, A; McIntosh, A M; Lafer, B; Baune, B T; Ekman, C J; Zarate, C A; Bearden, C E; Henry, C; Simhandl, C; McDonald, C; Bourne, C; Stein, D J; Wolf, D H; Cannon, D M; Glahn, D C; Veltman, D J; Pomarol-Clotet, E; Vieta, E; Canales-Rodriguez, E J; Nery, F G; Duran, F L S; Busatto, G F; Roberts, G; Pearlson, G D; Goodwin, G M; Kugel, H; Whalley, H C; Ruhe, H G; Soares, J C; Fullerton, J M; Rybakowski, J K; Savitz, J; Chaim, K T; Fatjó-Vilas, M; Soeiro-de-Souza, M G; Boks, M P; Zanetti, M V; Otaduy, M C G; Schaufelberger, M S; Alda, M; Ingvar, M; Phillips, M L; Kempton, M J; Bauer, M; Landén, M; Lawrence, N S; van Haren, N E M; Horn, N R; Freimer, N B; Gruber, O; Schofield, P R; Mitchell, P B; Kahn, R S; Lenroot, R; Machado-Vieira, R; Ophoff, R A; Sarró, S; Frangou, S; Satterthwaite, T D; Hajek, T; Dannlowski, U; Malt, U F; Arolt, V; Gattaz, W F; Drevets, W C; Caseras, X; Agartz, I; Thompson, P M; Andreassen, O A Molecular psychiatry. 28461699 2017 May 02;
Connectome imaging for mapping human brain pathways. Shi, Y; Toga, A W Molecular psychiatry. 28461700 2017 Sep;
Subcortical brain structure and suicidal behaviour in major depressive disorder: a meta-analysis from the ENIGMA-MDD working group. Rentería, M E; Schmaal, L; Hibar, D P; Couvy-Duchesne, B; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hatton, S N; Lagopoulos, J; Veltman, D J; van der Wee, N; van Erp, T G M; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Godlewska, B R; Cowen, P J; Penninx, B W J H; Jahanshad, N; Thompson, P M; Wright, M J; Martin, N G; Christensen, H; Hickie, I B Translational psychiatry. 28463239 2017 May 02;
Associations of the Intellectual Disability Gene MYT1L with Helix-Loop-Helix Gene Expression, Hippocampus Volume and Hippocampus Activation During Memory Retrieval. Kepa, Agnieszka; Martinez Medina, Lourdes; Erk, Susanne; Srivastava, Deepak P; Fernandes, Alinda; Toro, Roberto; Lévi, Sabine; Ruggeri, Barbara; Fernandes, Cathy; Degenhardt, Franziska; Witt, Stephanie H; Meyer-Lindenberg, Andreas; Poncer, Jean-Christophe; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Müller, Christian P; Heinz, Andreas; Walter, Henrik; Schumann, Gunter; Desrivières, Sylvane Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 28470180 2017 Dec;
Widespread Allelic Heterogeneity in Complex Traits. Hormozdiari, Farhad; Zhu, Anthony; Kichaev, Gleb; Ju, Chelsea J-T; Segrè, Ayellet V; Joo, Jong Wha J; Won, Hyejung; Sankararaman, Sriram; Pasaniuc, Bogdan; Shifman, Sagiv; Eskin, Eleazar American journal of human genetics. 28475861 2017 May 04;
Experimental Design on a Budget for Sparse Linear Models and Applications. Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Singh, Vikas JMLR workshop and conference proceedings. 28479945 2016 Jun;
Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. Kleffner, Robert; Flatten, Jeff; Leaver-Fay, Andrew; Baker, David; Siegel, Justin B; Khatib, Firas; Cooper, Seth Bioinformatics (Oxford, England). 28481970 2017 Sep 01;
Deep learning for healthcare: review, opportunities and challenges. Miotto, Riccardo; Wang, Fei; Wang, Shuang; Jiang, Xiaoqian; Dudley, Joel T Briefings in bioinformatics. 28481991 2017 May 06;
Discovering and linking public omics data sets using the Omics Discovery Index. Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; Hermjakob, Henning Nature biotechnology. 28486464 2017 05 09;
Continuous representations of brain connectivity using spatial point processes. Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul M Medical image analysis. 28487128 2017 Oct;
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. Jagodnik, Kathleen M; Koplev, Simon; Jenkins, Sherry L; Ohno-Machado, Lucila; Paten, Benedict; Schurer, Stephan C; Dumontier, Michel; Verborgh, Ruben; Bui, Alex; Ping, Peipei; McKenna, Neil J; Madduri, Ravi; Pillai, Ajay; Ma'ayan, Avi Journal of biomedical informatics. 28501646 2017 07;
Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions. Xia, Yin; Cai, Tianxi; Cai, T Tony Biometrika. 28502988 2015 Jun;
L1-Regularized Least Squares for Support Recovery of High Dimensional Single Index Models with Gaussian Designs. Neykov, Matey; Liu, Jun S; Cai, Tianxi Journal of machine learning research : JMLR. 28503101 2016 May;
Heritability of Hippocampal Formation Sub-region Volumes. Greenspan, Kiefer S; Arakelian, Claire R; van Erp, Theo G M Journal of neurology and neuroscience. 28503392 2016;
Diverging volumetric trajectories following pediatric traumatic brain injury. Dennis, Emily L; Faskowitz, Joshua; Rashid, Faisal; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Jahanshad, Neda; Thompson, Paul M; Asarnow, Robert F NeuroImage. Clinical. 28507895 2017;
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. Vizcaíno, Juan Antonio; Mayer, Gerhard; Perkins, Simon; Barsnes, Harald; Vaudel, Marc; Perez-Riverol, Yasset; Ternent, Tobias; Uszkoreit, Julian; Eisenacher, Martin; Fischer, Lutz; Rappsilber, Juri; Netz, Eugen; Walzer, Mathias; Kohlbacher, Oliver; Leitner, Alexander; Chalkley, Robert J; Ghali, Fawaz; Martínez-Bartolomé, Salvador; Deutsch, Eric W; Jones, Andrew R Molecular & cellular proteomics : MCP. 28515314 2017 Jul;
Using high-resolution variant frequencies to empower clinical genome interpretation. Whiffin, Nicola; Minikel, Eric; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel; Ware, James S Genetics in medicine : official journal of the American College of Medical Genetics. 28518168 2017 Oct;
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. Bernstein, Matthew N; Doan, AnHai; Dewey, Colin N Bioinformatics (Oxford, England). 28535296 2017 Sep 15;
Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach. Wallace, Byron C; Noel-Storr, Anna; Marshall, Iain J; Cohen, Aaron M; Smalheiser, Neil R; Thomas, James Journal of the American Medical Informatics Association : JAMIA. 28541493 2017 Nov 01;
Prefrontal cortical thinning links to negative symptoms in schizophrenia via the ENIGMA consortium. Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Morch-Johnsen, L; Færden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Jahanshad, N; De Rossi, P; Piras, F; Banaj, N; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, S Psychological medicine. 28545597 2018 Jan;
Statistical Methods for Latent Class Quantitative Trait Loci Mapping. Ye, Shuyun; Bacher, Rhonda; Keller, Mark P; Attie, Alan D; Kendziorski, Christina Genetics. 28550015 2017 07;
VISAGE: Interactive Visual Graph Querying. Pienta, Robert; Navathe, Shamkant; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen Horng AVI : proceedings of the Workshop on Advanced Visual Interfaces. AVI (Conference). 28553670 2016 Jun;
Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics. Barger, Jamie L; Vann, James M; Cray, Nicole L; Pugh, Thomas D; Mastaloudis, Angela; Hester, Shelly N; Wood, Steven M; Newton, Michael A; Weindruch, Richard; Prolla, Tomas A Aging cell. 28556428 2017 Aug;
Structure-Leveraged Methods in Breast Cancer Risk Prediction. Fan, Jun; Wu, Yirong; Yuan, Ming; Page, David; Liu, Jie; Ong, Irene M; Peissig, Peggy; Burnside, Elizabeth Journal of machine learning research : JMLR. 28559747 2016 Dec;
A review of active learning approaches to experimental design for uncovering biological networks. Sverchkov, Yuriy; Craven, Mark PLoS computational biology. 28570593 2017 Jun;
Cultural Shift or Linguistic Drift? Comparing Two Computational Measures of Semantic Change. Hamilton, William L; Leskovec, Jure; Jurafsky, Dan Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing. 28580459 2016 Nov;
Genetic influences on individual differences in longitudinal changes in global and subcortical brain volumes: Results of the ENIGMA plasticity working group. Brouwer, Rachel M; Panizzon, Matthew S; Glahn, David C; Hibar, Derrek P; Hua, Xue; Jahanshad, Neda; Abramovic, Lucija; de Zubicaray, Greig I; Franz, Carol E; Hansell, Narelle K; Hickie, Ian B; Koenis, Marinka M G; Martin, Nicholas G; Mather, Karen A; McMahon, Katie L; Schnack, Hugo G; Strike, Lachlan T; Swagerman, Suzanne C; Thalamuthu, Anbupalam; Wen, Wei; Gilmore, John H; Gogtay, Nitin; Kahn, René S; Sachdev, Perminder S; Wright, Margaret J; Boomsma, Dorret I; Kremen, William S; Thompson, Paul M; Hulshoff Pol, Hilleke E Human brain mapping. 28580697 2017 Sep;
QSAR-driven design, synthesis and discovery of potent chalcone derivatives with antitubercular activity. Gomes, Marcelo N; Braga, Rodolpho C; Grzelak, Edyta M; Neves, Bruno J; Muratov, Eugene; Ma, Rui; Klein, Larry L; Cho, Sanghyun; Oliveira, Guilherme R; Franzblau, Scott G; Andrade, Carolina Horta European journal of medicinal chemistry. 28582669 2017 May 10;
Dead simple OWL design patterns. Osumi-Sutherland, David; Courtot, Melanie; Balhoff, James P; Mungall, Christopher Journal of biomedical semantics. 28583177 2017 Jun 05;
Predicting attention-deficit/hyperactivity disorder severity from psychosocial stress and stress-response genes: a random forest regression approach. van der Meer, D; Hoekstra, P J; van Donkelaar, M; Bralten, J; Oosterlaan, J; Heslenfeld, D; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C A Translational psychiatry. 28585928 2017 Jun 06;
Female-specific association of NOS1 genotype with white matter microstructure in ADHD patients and controls. van Ewijk, Hanneke; Bralten, Janita; van Duin, Esther D A; Hakobjan, Marina; Buitelaar, Jan K; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina; Hoogman, Martine; Oosterlaan, Jaap; Franke, Barbara Journal of child psychology and psychiatry, and allied disciplines. 28589541 2017 Aug;
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. Martínez-Romero, Marcos; Jonquet, Clement; O'Connor, Martin J; Graybeal, John; Pazos, Alejandro; Musen, Mark A Journal of biomedical semantics. 28592275 2017 Jun 07;
Association of longitudinal white matter degeneration and cerebrospinal fluid biomarkers of neurodegeneration, inflammation and Alzheimer's disease in late-middle-aged adults. Racine, Annie M; Merluzzi, Andrew P; Adluru, Nagesh; Norton, Derek; Koscik, Rebecca L; Clark, Lindsay R; Berman, Sara E; Nicholas, Christopher R; Asthana, Sanjay; Alexander, Andrew L; Blennow, Kaj; Zetterberg, Henrik; Kim, Won Hwa; Singh, Vikas; Carlsson, Cynthia M; Bendlin, Barbara B; Johnson, Sterling C Brain imaging and behavior. 28600739 2017 Jun 09;
The Arf6 activator Efa6/PSD3 confers regional specificity and modulates ethanol consumption in Drosophila and humans. Gonzalez, D A; Jia, T; Pinzón, J H; Acevedo, S F; Ojelade, S A; Xu, B; Tay, N; Desrivières, S; Hernandez, J L; Banaschewski, T; Büchel, C; Bokde, A L W; Conrod, P J; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P A; Heinz, A; Ittermann, B; Lathrop, M; Martinot, J-L; Paus, T; Smolka, M N; IMAGEN Consortium; Rodan, A R; Schumann, G; Rothenfluh, A Molecular psychiatry. 28607459 2017 Jun 13;
Characterising omission errors in everyday task completion and cognitive correlates in individuals with mild cognitive impairment and dementia. Beaver, Jenna; Wilson, Kaci B; Schmitter-Edgecombe, Maureen Neuropsychological rehabilitation 28617099 2019 Jun
ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis. Zhang, Guohao; Kochunov, Peter; Hong, Elliot; Kelly, Sinead; Whelan, Christopher; Jahanshad, Neda; Thompson, Paul; Chen, Jian BMC bioinformatics. 28617224 2017 Jun 06;
Psychosocial Stress and Brain Function in Adolescent Psychopathology. Quinlan, Erin Burke; Cattrell, Anna; Jia, Tianye; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Conrod, Patricia J; Desrivieres, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Glennon, Jeffrey C; Buitelaar, Jan K; Happé, Francesca; Loth, Eva; Barker, Edward D; Schumann, Gunter; IMAGEN Consortium The American journal of psychiatry. 28618856 2017 08 01;
Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier Journal of biomedical informatics. 28625880 ;
Big Data Analytics with Datalog Queries on Spark. Shkapsky, Alexander; Yang, Mohan; Interlandi, Matteo; Chiu, Hsuan; Condie, Tyson; Zaniolo, Carlo Proceedings. ACM-Sigmod International Conference on Management of Data. 28626296 2016 Jun-Jul;
Temporally Factorized Network Modeling for Evolutionary Network Analysis. Yu, Wenchao; Aggarwal, Charu C; Wang, Wei Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining. 28626845 2017 Feb;
Structural complexity and molecular heterogeneity of a butterfly ejaculate reflect a complex history of selection. Meslin, Camille; Cherwin, Tamara S; Plakke, Melissa S; Hill, Jason; Small, Brandon S; Goetz, Breanna J; Wheat, Christopher W; Morehouse, Nathan I; Clark, Nathan L Proceedings of the National Academy of Sciences of the United States of America 28630352 2017 Jul 03
ClinVar data parsing. Zhang, Xiaolei; Minikel, Eric V; O'Donnell-Luria, Anne H; MacArthur, Daniel G; Ware, James S; Weisburd, Ben Wellcome open research. 28630944 2017;
Anxiety modulates the relation between attention-deficit/hyperactivity disorder severity and working memory-related brain activity. van der Meer, Dennis; Hoekstra, Pieter J; van Rooij, Daan; Winkler, Anderson M; van Ewijk, Hanneke; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Hartman, Catharina A The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. 28635543 2017 Mar 01;
Predicting structured metadata from unstructured metadata. Posch, Lisa; Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier Database : the journal of biological databases and curation. 28637268 ;
UpSetR: an R package for the visualization of intersecting sets and their properties. Conway, Jake R; Lex, Alexander; Gehlenborg, Nils Bioinformatics (Oxford, England). 28645171 2017 Sep 15;
Machine Learning Consensus Scoring Improves Performance Across Targets in Structure-Based Virtual Screening. Ericksen, Spencer S; Wu, Haozhen; Zhang, Huikun; Michael, Lauren A; Newton, Michael A; Hoffmann, F Michael; Wildman, Scott A Journal of chemical information and modeling. 28654262 2017 Jul 24;
Inducing Domain-Specific Sentiment Lexicons from Unlabeled Corpora. Hamilton, William L; Clark, Kevin; Leskovec, Jure; Jurafsky, Dan Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing. 28660257 2016 Nov;
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. McMurry, Julie A; Juty, Nick; Blomberg, Niklas; Burdett, Tony; Conlin, Tom; Conte, Nathalie; Courtot, Mélanie; Deck, John; Dumontier, Michel; Fellows, Donal K; Gonzalez-Beltran, Alejandra; Gormanns, Philipp; Grethe, Jeffrey; Hastings, Janna; Hériché, Jean-Karim; Hermjakob, Henning; Ison, Jon C; Jimenez, Rafael C; Jupp, Simon; Kunze, John; Laibe, Camille; Le Novère, Nicolas; Malone, James; Martin, Maria Jesus; McEntyre, Johanna R; Morris, Chris; Muilu, Juha; Müller, Wolfgang; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Sariyar, Murat; Snoep, Jacky L; Soiland-Reyes, Stian; Stanford, Natalie J; Swainston, Neil; Washington, Nicole; Williams, Alan R; Wimalaratne, Sarala M; Winfree, Lilly M; Wolstencroft, Katherine; Goble, Carole; Mungall, Christopher J; Haendel, Melissa A; Parkinson, Helen PLoS biology 28662064 2017 Jun
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance. Nadon, Celine; Van Walle, Ivo; Gerner-Smidt, Peter; Campos, Josefina; Chinen, Isabel; Concepcion-Acevedo, Jeniffer; Gilpin, Brent; Smith, Anthony M; Man Kam, Kai; Perez, Enrique; Trees, Eija; Kubota, Kristy; Takkinen, Johanna; Nielsen, Eva Møller; Carleto Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. 28662764 2017 06 08;
A Simple Approach to Shared Decision Making in Cancer Screening. Schrager, Sarina B; Phillips, Gina; Burnside, Elizabeth Family practice management. 28671358 2017 May/Jun;
The significance of negative correlations in brain connectivity. Zhan, Liang; Jenkins, Lisanne M; Wolfson, Ouri E; GadElkarim, Johnson Jonaris; Nocito, Kevin; Thompson, Paul M; Ajilore, Olusola A; Chung, Moo K; Leow, Alex D The Journal of comparative neurology 28675490 2017 Oct 15
An exploration of crowdsourcing citation screening for systematic reviews. Mortensen, Michael L; Adam, Gaelen P; Trikalinos, Thomas A; Kraska, Tim; Wallace, Byron C Research synthesis methods. 28677322 2017 Jul 04;
Origins of lymphatic and distant metastases in human colorectal cancer. Naxerova, Kamila; Reiter, Johannes G; Brachtel, Elena; Lennerz, Jochen K; van de Wetering, Marc; Rowan, Andrew; Cai, Tianxi; Clevers, Hans; Swanton, Charles; Nowak, Martin A; Elledge, Stephen J; Jain, Rakesh K Science (New York, N.Y.). 28684519 2017 07 07;
Large-scale physical activity data reveal worldwide activity inequality. Althoff, Tim; Sosi?, Rok; Hicks, Jennifer L; King, Abby C; Delp, Scott L; Leskovec, Jure Nature. 28693034 2017 07 20;
Simulating ideal assistive devices to reduce the metabolic cost of walking with heavy loads. Dembia, Christopher L; Silder, Amy; Uchida, Thomas K; Hicks, Jennifer L; Delp, Scott L PloS one. 28700630 2017;
A graph extension of the positional Burrows-Wheeler transform and its applications. Novak, Adam M; Garrison, Erik; Paten, Benedict Algorithms for molecular biology : AMB. 28702075 2017;
Gramene Database: Navigating Plant Comparative Genomics Resources. Gupta, Parul; Naithani, Sushma; Tello-Ruiz, Marcela Karey; Chougule, Kapeel; D'Eustachio, Peter; Fabregat, Antonio; Jiao, Yinping; Keays, Maria; Lee, Young Koung; Kumari, Sunita; Mulvaney, Joseph; Olson, Andrew; Preece, Justin; Stein, Joshua; Wei, Sharon; Weiser, Joel; Huerta, Laura; Petryszak, Robert; Kersey, Paul; Stein, Lincoln D; Ware, Doreen; Jaiswal, Pankaj Current plant biology. 28713666 2016 Nov;
Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM. Gutierrez-Barragan, Felipe; Ithapu, Vamsi K; Hinrichs, Chris; Maumet, Camille; Johnson, Sterling C; Nichols, Thomas E; Singh, Vikas; Alzheimer's Disease Neuroimaging Initiative NeuroImage. 28720551 2017 Oct 01;
Shallow Representation Learning via Kernel PCA Improves QSAR Modelability. Rensi, Stefano E; Altman, Russ B Journal of chemical information and modeling. 28727421 ;
Modernization of Enoxaparin Molecular Weight Determination Using Homogeneous Standards. Arnold, Katelyn M; Capuzzi, Stephen J; Xu, Yongmei; Muratov, Eugene N; Carrick, Kevin; Szajek, Anita Y; Tropsha, Alexander; Liu, Jian Pharmaceuticals (Basel, Switzerland). 28737679 2017 Jul 22;
Testing the comparative effects of physical activity advice by humans vs. computers in underserved populations: The COMPASS trial design, methods, and baseline characteristics. King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Garcia, Dulce; Chazaro, Aldo; Blanco, German; Hauser, Michelle; Fierros, Fernando; Ahn, David K; Diaz, Jose; Done, Monica; Fernandez, Juan; Bickmore, Timothy Contemporary clinical trials. 28739541 2017 Oct;
Mobile Monitoring of Traumatic Brain Injury in Older Adults: Challenges and Opportunities. Irimia, Andrei; Wei, Susan; Lu, Nanshu; Moore, Constance M; Kennedy, David N Neuroinformatics. 28748392 2017 Jul;
Principles of Dataset Versioning: Exploring the Recreation/Storage Tradeoff. Bhattacherjee, Souvik; Chavan, Amit; Huang, Silu; Deshpande, Amol; Parameswaran, Aditya Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 28752014 2015 Aug;
Chalcone Derivatives: Promising Starting Points for Drug Design. Gomes, Marcelo N; Muratov, Eugene N; Pereira, Maristela; Peixoto, Josana C; Rosseto, Lucimar P; Cravo, Pedro V L; Andrade, Carolina H; Neves, Bruno J Molecules (Basel, Switzerland). 28757583 2017 Jul 25;
Genome-wide association analysis identifies common variants influencing infant brain volumes. Xia, K; Zhang, J; Ahn, M; Jha, S; Crowley, J J; Szatkiewicz, J; Li, T; Zou, F; Zhu, H; Hibar, D; Thompson, P; ENIGMA Consortium; Sullivan, P F; Styner, M; Gilmore, J H; Knickmeyer, R C Translational psychiatry. 28763065 2017 Aug 01;
Effect of tobacco smoking on frontal cortical thickness development: A longitudinal study in a mixed cohort of ADHD-affected and -unaffected youth. Akkermans, Sophie E A; van Rooij, Daan; Rommelse, Nanda; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Mennes, Maarten; Buitelaar, Jan K European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. 28764867 2017 10;
Association of White Matter With Core Cognitive Deficits in Patients With Schizophrenia. Kochunov, Peter; Coyle, Thomas R; Rowland, Laura M; Jahanshad, Neda; Thompson, Paul M; Kelly, Sinead; Du, Xiaoming; Sampath, Hemalatha; Bruce, Heather; Chiappelli, Joshua; Ryan, Meghann; Fisseha, Feven; Savransky, Anya; Adhikari, Bhim; Chen, Shuo; Paciga, Sara A; Whelan, Christopher D; Xie, Zhiyong; Hyde, Craig L; Chen, Xing; Schubert, Christian R; O'Donnell, Patricio; Hong, L Elliot JAMA psychiatry. 28768312 2017 Sep 01;
Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data. Shin, Sunyoung; Kele?, Sündüz Statistics in biosciences. 28781711 2017 Jun;
Consistency of BRCA1 and BRCA2 Variant Classifications Among Clinical Diagnostic Laboratories. Lincoln, Stephen E; Yang, Shan; Cline, Melissa S; Kobayashi, Yuya; Zhang, Can; Topper, Scott; Haussler, David; Paten, Benedict; Nussbaum, Robert L JCO precision oncology. 28782058 2017 Jul;
Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoid-derived hematologic malignancies. Kurtz, Stephen E; Eide, Christopher A; Kaempf, Andy; Khanna, Vishesh; Savage, Samantha L; Rofelty, Angela; English, Isabel; Ho, Hibery; Pandya, Ravi; Bolosky, William J; Poon, Hoifung; Deininger, Michael W; Collins, Robert; Swords, Ronan T; Watts, Justin; Pollyea, Daniel A; Medeiros, Bruno C; Traer, Elie; Tognon, Cristina E; Mori, Motomi; Druker, Brian J; Tyner, Jeffrey W Proceedings of the National Academy of Sciences of the United States of America. 28784769 2017 Sep 05;
PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension. Chen, Feng; Wang, Chenghong; Dai, Wenrui; Jiang, Xiaoqian; Mohammed, Noman; Al Aziz, Md Momin; Sadat, Md Nazmus; Sahinalp, Cenk; Lauter, Kristin; Wang, Shuang BMC medical genomics. 28786365 2017 Jul 26;
Utility of BI-RADS Assessment Category 4 Subdivisions for Screening Breast MRI. Strigel, Roberta M; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie R; DeMartini, Wendy B AJR. American journal of roentgenology. 28792802 2017 Jun;
Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance. Emad, Amin; Cairns, Junmei; Kalari, Krishna R; Wang, Liewei; Sinha, Saurabh Genome biology. 28800781 2017 Aug 11;
Precision Diagnosis Of Melanoma And Other Skin Lesions From Digital Images. Bhattacharya, Abhishek; Young, Albert; Wong, Andrew; Stalling, Simone; Wei, Maria; Hadley, Dexter AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 28815132 2017;
D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization. Sharma, Deepak K; Solbrig, Harold R; Prud'hommeaux, Eric; Lee, Kate; Pathak, Jyotishman; Jiang, Guoqian AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 28815140 2017;
SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort. Rueda, Manuel; Torkamani, Ali BMC bioinformatics. 28821228 2017 Aug 18;
Anxiety-related experience-dependent white matter structural differences in adolescence: A monozygotic twin difference approach. Adluru, Nagesh; Luo, Zhan; Van Hulle, Carol A; Schoen, Andrew J; Davidson, Richard J; Alexander, Andrew L; Goldsmith, H Hill Scientific reports. 28821748 2017 Aug 18;
Long Noncoding RNA Facilitated Gene Therapy Reduces Atherosclerosis in a Murine Model of Familial Hypercholesterolemia. Tontonoz, Peter; Wu, Xiaohui; Jones, Marius; Zhang, Zhengyi; Salisbury, David; Sallam, Tamer Circulation. 28827223 2017 Aug 22;
Refinement by integration: aggregated effects of multimodal imaging markers on adult ADHD. Wolfers, Thomas; Arenas, Alberto Llera; Onnink, A Marten H; Dammers, Janneke; Hoogman, Martine; Zwiers, Marcel P; Buitelaar, Jan K; Franke, Barbara; Marquand, Andre F; Beckmann, Christian F Journal of psychiatry & neuroscience : JPN. 28832320 2017 Nov;
High-Definition Medicine. Torkamani, Ali; Andersen, Kristian G; Steinhubl, Steven R; Topol, Eric J Cell. 28841416 2017 Aug 24;
Apolipoprotein E Genotype and Sex Risk Factors for Alzheimer Disease: A Meta-analysis. Neu, Scott C; Pa, Judy; Kukull, Walter; Beekly, Duane; Kuzma, Amanda; Gangadharan, Prabhakaran; Wang, Li-San; Romero, Klaus; Arneric, Stephen P; Redolfi, Alberto; Orlandi, Daniele; Frisoni, Giovanni B; Au, Rhoda; Devine, Sherral; Auerbach, Sanford; Espinosa, Ana; Boada, Mercè; Ruiz, Agustín; Johnson, Sterling C; Koscik, Rebecca; Wang, Jiun-Jie; Hsu, Wen-Chuin; Chen, Yao-Liang; Toga, Arthur W JAMA neurology. 28846757 2017 Oct 01;
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. Deutsch, Eric W; Orchard, Sandra; Binz, Pierre-Alain; Bittremieux, Wout; Eisenacher, Martin; Hermjakob, Henning; Kawano, Shin; Lam, Henry; Mayer, Gerhard; Menschaert, Gerben; Perez-Riverol, Yasset; Salek, Reza M; Tabb, David L; Tenzer, Stefan; Vizcaíno, Juan Antonio; Walzer, Mathias; Jones, Andrew R Journal of proteome research. 28849660 2017 Dec 01;
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Overall, Christopher M; Deutsch, Eric W Journal of proteome research. 28853897 2017 Dec 01;
A signal-based method for finding driver modules of breast cancer metastasis to the lung. Yan, Gaibo; Chen, Vicky; Lu, Xinghua; Lu, Songjian Scientific reports. 28855549 2017 08 30;
Data-analysis strategies for image-based cell profiling. Caicedo, Juan C; Cooper, Sam; Heigwer, Florian; Warchal, Scott; Qiu, Peng; Molnar, Csaba; Vasilevich, Aliaksei S; Barry, Joseph D; Bansal, Harmanjit Singh; Kraus, Oren; Wawer, Mathias; Paavolainen, Lassi; Herrmann, Markus D; Rohban, Mohammad; Hung, Jane; Hennig, Holger; Concannon, John; Smith, Ian; Clemons, Paul A; Singh, Shantanu; Rees, Paul; Horvath, Peter; Linington, Roger G; Carpenter, Anne E Nature methods. 28858338 2017 Aug 31;
Phelan-McDermid syndrome data network: Integrating patient reported outcomes with clinical notes and curated genetic reports. Kothari, Cartik; Wack, Maxime; Hassen-Khodja, Claire; Finan, Sean; Savova, Guergana; O'Boyle, Megan; Bliss, Geraldine; Cornell, Andria; Horn, Elizabeth J; Davis, Rebecca; Jacobs, Jacquelyn; Kohane, Isaac; Avillach, Paul American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. 28862395 2017 Sep 01;
Using information technology to improve surveillance of antimicrobial resistance in South East Asia. Vong, Sirenda; Anciaux, Amaury; Hulth, Anette; Stelling, John; Thamlikitkul, Visanu; Gupta, Sunil; Fuks, Jonas M; Walia, K?mini; Rattanumpawan, Pinyo; Eremin, Sergey; Tisocki, Klara; Sedai, Tika R; Sharma, Anuj BMJ (Clinical research ed.). 28874344 2017 09 05;
Overdominant Effect of a CHRNA4 Polymorphism on Cingulo-Opercular Network Activity and Cognitive Control. Sadaghiani, Sepideh; Ng, Bernard; Altmann, Andre; Poline, Jean-Baptiste; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Gallinat, Jürgen; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Lemaitre, Hervé; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Napolioni, Valerio; Greicius, Michael The Journal of neuroscience : the official journal of the Society for Neuroscience. 28877969 2017 10 04;
Modelling haplotypes with respect to reference cohort variation graphs. Rosen, Yohei; Eizenga, Jordan; Paten, Benedict Bioinformatics (Oxford, England). 28881971 2017 Jul 15;
Predicting multicellular function through multi-layer tissue networks. Zitnik, Marinka; Leskovec, Jure Bioinformatics (Oxford, England). 28881986 2017 Jul 15;
Unique transcriptomic response to sepsis is observed among patients of different age groups. Raymond, Steven L; López, María Cecilia; Baker, Henry V; Larson, Shawn D; Efron, Philip A; Sweeney, Timothy E; Khatri, Purvesh; Moldawer, Lyle L; Wynn, James L PloS one. 28886074 2017;
ARCHITECTURAL PATTERNS FOR DIFFERENTIAL DIAGNOSIS OF PROLIFERATIVE BREAST LESIONS FROM HISTOPATHOLOGICAL IMAGES. Nguyen, L; Tosun, A B; Fine, J L; Taylor, D L; Chennubhotla, S C Proceedings. IEEE International Symposium on Biomedical Imaging. 28890755 2017 Apr;
Comments on ''Personalized dose finding using outcome weighted learning''. Fan, Jun; Yuan, Ming Journal of the American Statistical Association. 28919653 2017;
Precision annotation of digital samples in NCBI's gene expression omnibus. Hadley, Dexter; Pan, James; El-Sayed, Osama; Aljabban, Jihad; Aljabban, Imad; Azad, Tej D; Hadied, Mohamad O; Raza, Shuaib; Rayikanti, Benjamin Abhishek; Chen, Bin; Paik, Hyojung; Aran, Dvir; Spatz, Jordan; Himmelstein, Daniel; Panahiazar, Maryam; Bhattacharya, Sanchita; Sirota, Marina; Musen, Mark A; Butte, Atul J Scientific data. 28925997 2017 Sep 19;
Periodontal-induced chronic inflammation triggers macrophage secretion of Ccl12 to inhibit fibroblast-mediated cardiac wound healing. DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ero, Osasere K; Cates, Courtney A; Flynn, Elizabeth R; Cannon, Presley L; Jung, Mira; Shannon, De'Aries; Garrett, Michael R; Buchanan, William; Hall, Michael E; Ma, Yonggang; Lindsey, Merry L JCI insight. 28931761 2017 Sep 21;
Enhancing Diffusion MRI Measures By Integrating Grey and White Matter Morphometry With Hyperbolic Wasserstein Distance. Zhang, Wen; Shi, Jie; Yu, Jun; Zhan, Liang; Thompson, Paul M; Wang, Yalin Proceedings. IEEE International Symposium on Biomedical Imaging. 28936280 2017;
Systematic integration of biomedical knowledge prioritizes drugs for repurposing. Himmelstein, Daniel Scott; Lizee, Antoine; Hessler, Christine; Brueggeman, Leo; Chen, Sabrina L; Hadley, Dexter; Green, Ari; Khankhanian, Pouya; Baranzini, Sergio E eLife. 28936969 2017 Sep 22;
The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays. Schwenk, Jochen M; Omenn, Gilbert S; Sun, Zhi; Campbell, David S; Baker, Mark S; Overall, Christopher M; Aebersold, Ruedi; Moritz, Robert L; Deutsch, Eric W Journal of proteome research. 28938075 2017 Dec 01;
Creating a data resource: what will it take to build a medical information commons? Deverka, Patricia A; Majumder, Mary A; Villanueva, Angela G; Anderson, Margaret; Bakker, Annette C; Bardill, Jessica; Boerwinkle, Eric; Bubela, Tania; Evans, Barbara J; Garrison, Nanibaa' A; Gibbs, Richard A; Gentleman, Robert; Glazer, David; Goldstein, Melissa M; Greely, Hank; Harris, Crane; Knoppers, Bartha M; Koenig, Barbara A; Kohane, Isaac S; La Rosa, Salvatore; Mattison, John; O'Donnell, Christopher J; Rai, Arti K; Rehm, Heidi L; Rodriguez, Laura L; Shelton, Robert; Simoncelli, Tania; Terry, Sharon F; Watson, Michael S; Wilbanks, John; Cook-Deegan, Robert; McGuire, Amy L Genome medicine. 28938910 2017 Sep 22;
Multi-Source Multi-Target Dictionary Learning for Prediction of Cognitive Decline. Zhang, Jie; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin Information processing in medical imaging : proceedings of the ... conference. 28943731 2017 Jun;
Topographic Regularity for Tract Filtering in Brain Connectivity. Wang, Junyan; Aydogan, Dogu Baran; Varma, Rohit; Toga, Arthur W; Shi, Yonggang Information processing in medical imaging : proceedings of the ... conference. 28943732 2017 Jun;
DNA repair deficiency biomarkers and the 70-gene ultra-high risk signature as predictors of veliparib/carboplatin response in the I-SPY 2 breast cancer trial. Wolf, Denise M; Yau, Christina; Sanil, Ashish; Glas, Annuska; Petricoin, Emanuel; Wulfkuhle, Julia; Severson, Tesa M; Linn, Sabine; Brown-Swigart, Lamorna; Hirst, Gillian; Buxton, Meredith; DeMichele, Angela; Hylton, Nola; Symmans, Fraser; Yee, Doug; Paoloni, Melissa; Esserman, Laura; Berry, Don; Rugo, Hope; Olopade, Olufunmilayo; van 't Veer, Laura NPJ breast cancer. 28948212 2017;
Optimizing Open-Ended Crowdsourcing: The Next Frontier in Crowdsourced Data Management. Parameswaran, Aditya; Sarma, Akash Das; Venkataraman, Vipul Bulletin of the Technical Committee on Data Engineering. 28951893 2016 Dec;
GraphSpace: stimulating interdisciplinary collaborations in network biology. Bharadwaj, Aditya; Singh, Divit P; Ritz, Anna; Tegge, Allison N; Poirel, Christopher L; Kraikivski, Pavel; Adames, Neil; Luther, Kurt; Kale, Shiv D; Peccoud, Jean; Tyson, John J; Murali, T M Bioinformatics (Oxford, England). 28957495 2017 Oct 01;
Algorithmic Advances and Applications from RECOMB 2017. NULL Cell systems. 28957652 2017 Sep 27;
EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING. Zhang, Jie; Fan, Yonghui; Li, Qingyang; Thompson, Paul M; Ye, Jieping; Wang, Yalin Proceedings. IEEE International Symposium on Biomedical Imaging. 28959379 2017 Apr;
Citizen science applied to building healthier community environments: advancing the field through shared construct and measurement development. Hinckson, Erica; Schneider, Margaret; Winter, Sandra J; Stone, Emily; Puhan, Milo; Stathi, Afroditi; Porter, Michelle M; Gardiner, Paul A; Dos Santos, Daniela Lopes; Wolff, Andrea; King, Abby C The international journal of behavioral nutrition and physical activity. 28962580 2017 Sep 29;
Objective measurement of function following lumbar spinal stenosis decompression reveals improved functional capacity with stagnant real-life physical activity. Smuck, Matthew; Muaremi, Amir; Zheng, Patricia; Norden, Justin; Sinha, Aman; Hu, Richard; Tomkins-Lane, Christy The spine journal : official journal of the North American Spine Society. 28962914 2018 Jan;
Causal Discovery from Nonstationary/Heterogeneous Data: Skeleton Estimation and Orientation Determination. Zhang, Kun; Huang, Biwei; Zhang, Jiji; Glymour, Clark; Schölkopf, Bernhard IJCAI : proceedings of the conference. 28966540 2017 Aug;
IPI59: An Actionable Biomarker to Improve Treatment Response in Serous Ovarian Carcinoma Patients. Choi, J; Ye, S; Eng, K H; Korthauer, K; Bradley, W H; Rader, J S; Kendziorski, C Statistics in biosciences. 28966695 2017 Jun;
Structural Neuroimaging of Anorexia Nervosa: Future Directions in the Quest for Mechanisms Underlying Dynamic Alterations. King, Joseph A; Frank, Guido K W; Thompson, Paul M; Ehrlich, Stefan Biological psychiatry. 28967386 ;
Applying family analyses to electronic health records to facilitate genetic research. Huang, Xiayuan; Elston, Robert C; Rosa, Guilherme J; Mayer, John; Ye, Zhan; Kitchner, Terrie; Brilliant, Murray H; Page, David; Hebbring, Scott J; Stegle, Oliver Bioinformatics (Oxford, England). 28968884 2018 Feb 15;
Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma. Young, Jonathan D; Cai, Chunhui; Lu, Xinghua BMC bioinformatics. 28984190 2017 Oct 03;
How Gamification Affects Physical Activity: Large-scale Analysis of Walking Challenges in a Mobile Application. Shameli, Ali; Althoff, Tim; Saberi, Amin; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 28990011 2017 Apr;
Association between anti-citrullinated fibrinogen antibodies and coronary artery disease in rheumatoid arthritis. Hejblum, Boris P; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Sparks, Jeffrey A; Sokolove, Jeremy; Cai, Tianxi; Liao, Katherine P Arthritis care & research. 28992379 2017 Oct 09;
Ultrafast Comparison of Personal Genomes via Precomputed Genome Fingerprints. Glusman, Gustavo; Mauldin, Denise E; Hood, Leroy E; Robinson, Max Frontiers in genetics. 29018478 2017;
Co-expression networks reveal the tissue-specific regulation of transcription and splicing. Saha, Ashis; Kim, Yungil; Gewirtz, Ariel D H; Jo, Brian; Gao, Chuan; McDowell, Ian C; GTEx Consortium; Engelhardt, Barbara E; Battle, Alexis Genome research. 29021288 2017 Nov;
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis. Yang, Fan; Wang, Jiebiao; GTEx Consortium; Pierce, Brandon L; Chen, Lin S Genome research. 29021290 2017 Nov;
Dynamic landscape and regulation of RNA editing in mammals. Tan, Meng How; Li, Qin; Shanmugam, Raghuvaran; Piskol, Robert; Kohler, Jennefer; Young, Amy N; Liu, Kaiwen Ivy; Zhang, Rui; Ramaswami, Gokul; Ariyoshi, Kentaro; Gupte, Ankita; Keegan, Liam P; George, Cyril X; Ramu, Avinash; Huang, Ni; Pollina, Elizabeth A; Leeman, Dena S; Rustighi, Alessandra; Goh, Y P Sharon; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Chawla, Ajay; Del Sal, Giannino; Peltz, Gary; Brunet, Anne; Conrad, Donald F; Samuel, Charles E; O'Connell, Mary A; Walkley, Carl R; Nishikura, Kazuko; Li, Jin Billy Nature. 29022589 2017 Oct 11;
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Landscape of X chromosome inactivation across human tissues. Tukiainen, Taru; Villani, Alexandra-Chloé; Yen, Angela; Rivas, Manuel A; Marshall, Jamie L; Satija, Rahul; Aguirre, Matt; Gauthier, Laura; Fleharty, Mark; Kirby, Andrew; Cummings, Beryl B; Castel, Stephane E; Karczewski, Konrad J; Aguet, François; Byrnes, Andrea; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)?Analysis Working Group; Statistical Methods groups?Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site?NDRI; Biospecimen Collection Source Site?RPCI; Biospecimen Core Resource?VARI; Brain Bank Repository?University of Miami Brain Endowment Bank; Leidos Biomedical?Project Management; ELSI Study; Genome Browser Data Integration &Visualization?EBI; Genome Browser Data Integration &Visualization?UCSC Genomics Institute, University of California Santa Cruz; Lappalainen, Tuuli; Regev, Aviv; Ardlie, Kristin G; Hacohen, Nir; MacArthur, Daniel G Nature. 29022598 2017 Oct 11;
A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC. Campbell, Walter S; Karlsson, Daniel; Vreeman, Daniel J; Lazenby, Audrey J; Talmon, Geoffrey A; Campbell, James R Journal of the American Medical Informatics Association : JAMIA. 29024958 2017 Sep 13;
TeachEnG: a Teaching Engine for Genomics. Kim, Minji; Kim, Yeonsung; Qian, Lei; Song, Jun S Bioinformatics (Oxford, England). 29028264 2017 Oct 15;
Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling. Partha, Raghavendran; Chauhan, Bharesh K; Ferreira, Zelia; Robinson, Joseph D; Lathrop, Kira; Nischal, Ken K; Chikina, Maria; Clark, Nathan L eLife. 29035697 2017 Oct 16;
Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies. Wang, Meng; Ji, Zhanglong; Wang, Shuang; Kim, Jihoon; Yang, Hai; Jiang, Xiaoqian; Ohno-Machado, Lucila Bioinformatics (Oxford, England). 29036461 2017 Dec 01;
County-level assessment of United States kindergarten vaccination rates for measles mumps rubella (MMR) for the 2014-2015 school year. Kluberg, Sheryl A; McGinnis, Denise P; Hswen, Yulin; Majumder, Maimuna S; Santillana, Mauricio; Brownstein, John S Vaccine. 29037574 ;
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Using the Telephone Interview for Cognitive Status and Telephone Montreal Cognitive Assessment for Evaluating Vascular Cognitive Impairment: Promising Call or Put on Hold? Cohen, Ronald A; Alexander, Gene E Stroke. 29042491 2017 11;
Variation in a range of mTOR-related genes associates with intracranial volume and intellectual disability. Reijnders, M R F; Kousi, M; van Woerden, G M; Klein, M; Bralten, J; Mancini, G M S; van Essen, T; Proietti-Onori, M; Smeets, E E J; van Gastel, M; Stegmann, A P A; Stevens, S J C; Lelieveld, S H; Gilissen, C; Pfundt, R; Tan, P L; Kleefstra, T; Franke, B; Elgersma, Y; Katsanis, N; Brunner, H G Nature communications. 29051493 2017 Oct 20;
Pharmacogenomic Discovery to Function and Mechanism: Breast Cancer as a Case Study. Wang, Liewei; Ingle, James; Weinshilboum, Richard Clinical pharmacology and therapeutics. 29052219 2018 Feb;
Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach. Wang, Shulei; Arena, Ellen T; Eliceiri, Kevin W; Yuan, Ming IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. 29053465 2018 Feb;
PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals. Wenzel, Sally E; Tyurina, Yulia Y; Zhao, Jinming; St Croix, Claudette M; Dar, Haider H; Mao, Gaowei; Tyurin, Vladimir A; Anthonymuthu, Tamil S; Kapralov, Alexandr A; Amoscato, Andrew A; Mikulska-Ruminska, Karolina; Shrivastava, Indira H; Kenny, Elizabeth M; Yang, Qin; Rosenbaum, Joel C; Sparvero, Louis J; Emlet, David R; Wen, Xiaoyan; Minami, Yoshinori; Qu, Feng; Watkins, Simon C; Holman, Theodore R; VanDemark, Andrew P; Kellum, John A; Bahar, Ivet; Bay?r, Hülya; Kagan, Valerian E Cell. 29053969 2017 Oct 19;
Translational MRI Volumetry with NeuroQuant: Effects of Version and Normative Data on Relationships with Memory Performance in Healthy Older Adults and Patients with Mild Cognitive Impairment. Stelmokas, Julija; Yassay, Lance; Giordani, Bruno; Dodge, Hiroko H; Dinov, Ivo D; Bhaumik, Arijit; Sathian, K; Hampstead, Benjamin M Journal of Alzheimer's disease : JAD. 29060939 2017;
Grappling with the Future Use of Big Data for Translational Medicine and Clinical Care. Murphy, S; Castro, V; Mandl, K Yearbook of medical informatics. 29063545 2017 Aug;
An Assessment of Imaging Informatics for Precision Medicine in Cancer. Chennubhotla, C; Clarke, L P; Fedorov, A; Foran, D; Harris, G; Helton, E; Nordstrom, R; Prior, F; Rubin, D; Saltz, J H; Shalley, E; Sharma, A Yearbook of medical informatics. 29063549 2017 Aug;
Imagining the ''open'' university: Sharing scholarship to improve research and education. McKiernan, Erin C PLoS biology. 29065148 2017 Oct;
WormBase 2017: molting into a new stage. Lee, Raymond Y N; Howe, Kevin L; Harris, Todd W; Arnaboldi, Valerio; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Davis, Paul; Gao, Sibyl; Grove, Christian; Kishore, Ranjana; Muller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Raciti, D Nucleic acids research. 29069413 2018 Jan 04;
To Three or not to Three: Improving Human Computation Game Onboarding with a Three-Star System. Gaston, Jacqueline; Cooper, Seth Proceedings of the SIGCHI conference on human factors in computing systems . CHI Conference. 29082386 2017;
A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0). Kuderna, Lukas F K; Tomlinson, Chad; Hillier, LaDeana W; Tran, Annabel; Fiddes, Ian T; Armstrong, Joel; Laayouni, Hafid; Gordon, David; Huddleston, John; Garcia Perez, Raquel; Povolotskaya, Inna; Serres Armero, Aitor; Gómez Garrido, Jèssica; Ho, Daniel; Ribeca, Paolo; Alioto, Tyler; Green, Richard E; Paten, Benedict; Navarro, Arcadi; Betranpetit, Jaume; Herrero, Javier; Eichler, Evan E; Sharp, Andrew J; Feuk, Lars; Warren, Wesley C; Marques-Bonet, Tomas GigaScience. 29092041 2017 Nov 01;
Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images. Spagnolo, Daniel M; Al-Kofahi, Yousef; Zhu, Peihong; Lezon, Timothy R; Gough, Albert; Stern, Andrew M; Lee, Adrian V; Ginty, Fiona; Sarachan, Brion; Taylor, D Lansing; Chennubhotla, S Chakra Cancer research. 29092944 2017 Nov 01;
Aggregating and Predicting Sequence Labels from Crowd Annotations. Nguyen, An T; Wallace, Byron C; Li, Junyi Jessy; Nenkova, Ani; Lease, Matthew Proceedings of the conference. Association for Computational Linguistics. Meeting. 29093611 2017;
Pharmacogenomics: Precision Medicine and Drug Response. Weinshilboum, Richard M; Wang, Liewei Mayo Clinic proceedings. 29101939 2017 Nov;
Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase. O'Banion, Colin P; Priestman, Melanie A; Hughes, Robert M; Herring, Laura E; Capuzzi, Stephen J; Lawrence, David S Cell chemical biology. 29104065 2017 Oct 25;
Cardiac macrophage biology in the steady-state heart, the aging heart, and following myocardial infarction. Ma, Yonggang; Mouton, Alan J; Lindsey, Merry L Translational research : the journal of laboratory and clinical medicine. 29106912 2018 01;
Privacy-preserving techniques of genomic data-a survey. Aziz, Md Momin Al; Sadat, Md Nazmus; Alhadidi, Dima; Wang, Shuang; Jiang, Xiaoqian; Brown, Cheryl L; Mohammed, Noman Briefings in bioinformatics. 29121240 2019 05 21;
An empirical Bayes test for allelic-imbalance detection in ChIP-seq. Zhang, Qi; Keles, Sündüz Biostatistics (Oxford, England). 29126153 ;
Enabling phenotypic big data with PheNorm. Yu, Sheng; Ma, Yumeng; Gronsbell, Jessica; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Liao, Katherine P; Cai, Tianxi Journal of the American Medical Informatics Association : JAMIA. 29126253 2018 01 01;
Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics. Ding, Michael Q; Chen, Lujia; Cooper, Gregory F; Young, Jonathan D; Lu, Xinghua Molecular cancer research : MCR. 29133589 2017 Nov 13;
Altered connectivity patterns among resting state networks in patients with ischemic white matter lesions. Ding, Ju-Rong; Ding, Xin; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Wang, Qingsong; Thompson, Paul Brain imaging and behavior. 29134612 2018 Oct;
Cortical and Subcortical Brain Morphometry Differences Between Patients With Autism Spectrum Disorder and Healthy Individuals Across the Lifespan: Results From the ENIGMA ASD Working Group. van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Busatto, Geraldo F; Calderoni, Sara; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis Souza; Durston, Sarah; Ecker, Christine; Fair, Damien; Fedor, Jennifer; Fitzgerald, Jackie; Freitag, Christine M; Gallagher, Louise; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; Lerch, Jason; Luna, Beatriz; Martinho, Mauricio Moller; McGrath, Jane; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot; Thompson, Paul M; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Buitelaar, Jan K The American journal of psychiatry. 29145754 2018 04 01;
Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure. Chen, Chi-Hua; Wang, Yunpeng; Lo, Min-Tzu; Schork, Andrew; Fan, Chun-Chieh; Holland, Dominic; Kauppi, Karolina; Smeland, Olav B; Djurovic, Srdjan; Sanyal, Nilotpal; Hibar, Derrek P; Thompson, Paul M; Thompson, Wesley K; Andreassen, Ole A; Dale, Anders M Scientific reports. 29147026 ;
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A Continuous Model of Cortical Connectivity. Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul M Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 29147688 2016 Oct;
Diffusion MRI in pediatric brain injury. Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery. 29149383 2017 Oct;
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A volumetric conformal mapping approach for clustering white matter fibers in the brain. Gupta, Vikash; Prasad, Gautam; Thompson, Paul Spectral and shape analysis in medical imaging : first International Workshop, SeSAMI 2016, held in conjunction with MICCAI 2016, Athens, Greece, October 21, 2016 : revised selected papers. SeSAMI (Workshop) (1st : 2016 : Athens, Greece). 29177252 2016 Oct;
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Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies. Kochunov, Peter; Dickie, Erin W; Viviano, Joseph D; Turner, Jessica; Kingsley, Peter B; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Fieremans, Els; Novikov, Dmitry; Veraart, Jelle; Hong, Elliot L; Malhotra, Anil K; Buchanan, Robert W; Chavez, Sofia; Voineskos, Aristotle N Human brain mapping. 29181875 2018 Feb;
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Preterm birth leads to hyper-reactive cognitive control processing and poor white matter organization in adulthood. Olsen, Alexander; Dennis, Emily L; Evensen, Kari Anne I; Husby Hollund, Ingrid Marie; Løhaugen, Gro C C; Thompson, Paul M; Brubakk, Ann-Mari; Eikenes, Live; Håberg, Asta K NeuroImage. 29191480 ;
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The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations. Keenan, Alexandra B; Jenkins, Sherry L; Jagodnik, Kathleen M; Koplev, Simon; He, Edward; Torre, Denis; Wang, Zichen; Dohlman, Anders B; Silverstein, Moshe C; Lachmann, Alexander; Kuleshov, Maxim V; Ma'ayan, Avi; Stathias, Vasileios; Terryn, Raymond; Cooper, Daniel; Forlin, Michele; Koleti, Amar; Vidovic, Dusica; Chung, Caty; Schürer, Stephan C; Vasiliauskas, Jouzas; Pilarczyk, Marcin; Shamsaei, Behrouz; Fazel, Mehdi; Ren, Yan; Niu, Wen; Clark, Nicholas A; White, Shana; Mahi, Naim; Zhang, Lixia; Kouril, Michal; Reichard, John F; Sivaganesan, Siva; Medvedovic, Mario; Meller, Jaroslaw; Koch, Rick J; Birtwistle, Marc R; Iyengar, Ravi; Sobie, Eric A; Azeloglu, Evren U; Kaye, Julia; Osterloh, Jeannette; Haston, Kelly; Kalra, Jaslin; Finkbiener, Steve; Li, Jonathan; Milani, Pamela; Adam, Miriam; Escalante-Chong, Renan; Sachs, Karen; Lenail, Alex; Ramamoorthy, Divya; Fraenkel, Ernest; Daigle, Gavin; Hussain, Uzma; Coye, Alyssa; Rothstein, Jeffrey; Sareen, Dhruv; Ornelas, Loren; Banuelos, Maria; Mandefro, Berhan; Ho, Ritchie; Svendsen, Clive N; Lim, Ryan G; Stocksdale, Jennifer; Casale, Malcolm S; Thompson, Terri G; Wu, Jie; Thompson, Leslie M; Dardov, Victoria; Venkatraman, Vidya; Matlock, Andrea; Van Eyk, Jennifer E; Jaffe, Jacob D; Papanastasiou, Malvina; Subramanian, Aravind; Golub, Todd R; Erickson, Sean D; Fallahi-Sichani, Mohammad; Hafner, Marc; Gray, Nathanael S; Lin, Jia-Ren; Mills, Caitlin E; Muhlich, Jeremy L; Niepel, Mario; Shamu, Caroline E; Williams, Elizabeth H; Wrobel, David; Sorger, Peter K; Heiser, Laura M; Gray, Joe W; Korkola, James E; Mills, Gordon B; LaBarge, Mark; Feiler, Heidi S; Dane, Mark A; Bucher, Elmar; Nederlof, Michel; Sudar, Damir; Gross, Sean; Kilburn, David F; Smith, Rebecca; Devlin, Kaylyn; Margolis, Ron; Derr, Leslie; Lee, Albert; Pillai, Ajay Cell systems. 29199020 2017 Nov 24;
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A COMPARISON OF NETWORK DEFINITIONS FOR DETECTING SEX DIFFERENCES IN BRAIN CONNECTIVITY USING SUPPORT VECTOR MACHINES. Hafzalla, George W; Ragothaman, Anjanibhargavi; Faskowitz, Joshua; Jahanshad, Neda; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Braskie, Meredith N; Prasad, Gautam; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 29201283 2017;
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Estimating bounds on causal effects in high-dimensional and possibly confounded systems. Malinsky, Daniel; Spirtes, Peter International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. 29203954 2017 Sep;
Pharmacoepidemiology in the era of real-world evidence. Toh, Sengwee Current epidemiology reports. 29204331 2017 Dec;
Estimating Effects of Dynamic Treatment Strategies in Pharmacoepidemiologic Studies with Time-varying Confounding: A Primer. Li, Xiaojuan; Young, Jessica G; Toh, Sengwee Current epidemiology reports. 29204332 2017 Dec;
Development and application of two semi-automated tools for targeted medical product surveillance in a distributed data network. Connolly, John G; Wang, Shirley V; Fuller, Candace C; Toh, Sengwee; Panozzo, Catherine A; Cocoros, Noelle; Zhou, Meijia; Gagne, Joshua J; Maro, Judith C Current epidemiology reports. 29204333 2017 Dec;
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Interleukins and their signaling pathways in the Reactome biological pathway database. Jupe, Steve; Ray, Keith; Roca, Corina Duenas; Varusai, Thawfeek; Shamovsky, Veronica; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning The Journal of allergy and clinical immunology. 29378288 2018 Apr;
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Nanopore sequencing and assembly of a human genome with ultra-long reads. Jain, Miten; Koren, Sergey; Miga, Karen H; Quick, Josh; Rand, Arthur C; Sasani, Thomas A; Tyson, John R; Beggs, Andrew D; Dilthey, Alexander T; Fiddes, Ian T; Malla, Sunir; Marriott, Hannah; Nieto, Tom; O'Grady, Justin; Olsen, Hugh E; Pedersen, Brent S; Rhie, Arang; Richardson, Hollian; Quinlan, Aaron R; Snutch, Terrance P; Tee, Louise; Paten, Benedict; Phillippy, Adam M; Simpson, Jared T; Loman, Nicholas J; Loose, Matthew Nature biotechnology. 29431738 2018 Jan 29;
Quantitative high-throughput phenotypic screening of pediatric cancer cell lines identifies multiple opportunities for drug repurposing. Shen, Min; Asawa, Rosita; Zhang, Ya-Qin; Cunningham, Elizabeth; Sun, Hongmao; Tropsha, Alexander; Janzen, William P; Muratov, Eugene N; Capuzzi, Stephen J; Farag, Sherif; Jadhav, Ajit; Blatt, Julie; Simeonov, Anton; Martinez, Natalia J Oncotarget. 29435139 2018 Jan 12;
A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations. Toor, Jugmohit S; Rao, Arjun A; McShan, Andrew C; Yarmarkovich, Mark; Nerli, Santrupti; Yamaguchi, Karissa; Madejska, Ada A; Nguyen, Son; Tripathi, Sarvind; Maris, John M; Salama, Sofie R; Haussler, David; Sgourakis, Nikolaos G Frontiers in immunology. 29441070 2018;
Learning Activity Predictors from Sensor Data: Algorithms, Evaluation, and Applications. Minor, Bryan; Doppa, Janardhan Rao; Cook, Diane J IEEE transactions on knowledge and data engineering. 29456436 2017 Dec 01;
Superbubbles, Ultrabubbles, and Cacti. Paten, Benedict; Eizenga, Jordan M; Rosen, Yohei M; Novak, Adam M; Garrison, Erik; Hickey, Glenn Journal of computational biology : a journal of computational molecular cell biology. 29461862 2018 Feb 20;
Assessing the Practice of Biomedical Ontology Evaluation: Gaps and Opportunities. Amith, Muhammad F; He, Zhe; Bian, Jiang; Antonio Lossio-Ventura, Juan; Tao, Cui Journal of biomedical informatics. 29462669 2018 Feb 17;
Comment. Reiss, Philip T; Goldsmith, Jeff Journal of the American Statistical Association. 29479124 2017;
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses. Torre, Denis; Krawczuk, Patrycja; Jagodnik, Kathleen M; Lachmann, Alexander; Wang, Zichen; Wang, Lily; Kuleshov, Maxim V; Ma'ayan, Avi Scientific data. 29485625 2018 Feb 27;
Exploring applications of crowdsourcing to cryo-EM. Bruggemann, Jacob; Lander, Gabriel C; Su, Andrew I Journal of structural biology. 29486249 2018 Jul;
Neuroimaging of the Injured Pediatric Brain: Methods and New Lessons. Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. 29488436 ;
Survival models and health sequences. Dempsey, Walter; McCullagh, Peter Lifetime data analysis. 29502184 2018 Mar 03;
From Pressure to Path: Barometer-based Vehicle Tracking. Ho, Bo-Jhang; Martin, Paul; Swaminathan, Prashanth; Srivastava, Mani BuildSys'15 : proceedings of the 2nd ACM International Conference on Embedded Systems for Energy-Efficient Buildings : November 4-5, 2015, Seoul, South Korea. ACM Conference on Embedded Systems for Energy-Efficient Buildings (2nd : 2015.... 29503981 2015 Nov;
SARA: A Mobile App to Engage Users in Health Data Collection. Rabbi, Mashfiqui; Philyaw-Kotov, Meredith; Lee, Jinseok; Mansour, Anthony; Dent, Laura; Wang, Xiaolei; Cunningham, Rebecca; Bonar, Erin; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 29503985 2017 Sep;
Exploring Symmetric and Asymmetric Bimanual Eating Detection with Inertial Sensors on the Wrist. Thomaz, Edison; Bedri, Abdelkareem; Prioleau, Temiloluwa; Essa, Irfan; Abowd, Gregory D DigitalBiomarkers'17 : proceedings of the 1st Workshop on Digital Biomarkers : June 23, 2017, Niagara Falls, NY, USA. Workshop on Digital Biomarkers (1st : 2017 : Niagara Falls, N.Y.). 29505038 2017 Jul;
Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation. Sadat, Md Nazmus; Jiang, Xiaoqian; Aziz, Md Momin Al; Wang, Shuang; Mohammed, Noman JMIR medical informatics. 29506966 2018 Mar 05;
Some methods for heterogeneous treatment effect estimation in high dimensions. Powers, Scott; Qian, Junyang; Jung, Kenneth; Schuler, Alejandro; Shah, Nigam H; Hastie, Trevor; Tibshirani, Robert Statistics in medicine. 29508417 2018 May 20;
Susceptibility of brain atrophy toTRIB3in Alzheimer's disease, evidence from functional prioritization in imaging genetics. Lorenzi, Marco; Altmann, Andre; Gutman, Boris; Wray, Selina; Arber, Charles; Hibar, Derrek P; Jahanshad, Neda; Schott, Jonathan M; Alexander, Daniel C; Thompson, Paul M; Ourselin, Sebastien; Alzheimer?s Disease Neuroimaging Initiative Proceedings of the National Academy of Sciences of the United States of America. 29511103 2018 Mar 20;
RNA expression profiling in sulfamethoxazole-treated patients with a range of in vitro lymphocyte cytotoxicity phenotypes. Reinhart, Jennifer M; Rose, Warren; Panyard, Daniel J; Newton, Michael A; Liebenstein, Tyler K; Yee, Jeremiah; Trepanier, Lauren A Pharmacology research & perspectives. 29511567 2018 04;
Chronodes: Interactive Multifocus Exploration of Event Sequences. Polack JR., Peter J; Chen, Shang-Tse; Kahng, Minsuk; DE Barbaro, Kaya; Basole, Rahul; Sharmin, Moushumi; Chau, Duen Horng ACM transactions on interactive intelligent systems. 29515937 2018 Feb;
Discovery of Causal Models that Contain Latent Variables through Bayesian Scoring of Independence Constraints. Jabbari, Fattaneh; Ramsey, Joseph; Spirtes, Peter; Cooper, Gregory Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). 29520396 2017 Sep;
A Practical Approach for Recognizing Eating Moments with Wrist-Mounted Inertial Sensing. Thomaz, Edison; Essa, Irfan; Abowd, Gregory D Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 29520397 2015 Sep;
Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters. Sweeney, Timothy E; Azad, Tej D; Donato, Michele; Haynes, Winston A; Perumal, Thanneer M; Henao, Ricardo; Bermejo-Martin, Jesús F; Almansa, Raquel; Tamayo, Eduardo; Howrylak, Judith A; Choi, Augustine; Parnell, Grant P; Tang, Benjamin; Nichols, Marshall; Woods, Christopher W; Ginsburg, Geoffrey S; Kingsmore, Stephen F; Omberg, Larsson; Mangravite, Lara M; Wong, Hector R; Tsalik, Ephraim L; Langley, Raymond J; Khatri, Purvesh Critical care medicine. 29537985 2018 Mar 13;
Anytime Exploration for Multi-armed Bandits using Confidence Information. Jun, Kwang-Sung; Nowak, Robert JMLR workshop and conference proceedings. 29541329 2016 Jun;
Adding Reg3? to the acute coronary syndrome prognostic marker list. Lindsey, Merry L; Mouton, Alan J; Ma, Yonggang International journal of cardiology. 29544938 2018 05 01;
Emotional Processing in Obsessive-Compulsive Disorder: A Systematic Review and Meta-analysis of 25 Functional Neuroimaging Studies. Thorsen, Anders Lillevik; Hagland, Pernille; Radua, Joaquim; Mataix-Cols, David; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile A Biological psychiatry. Cognitive neuroscience and neuroimaging. 29550459 2018 Feb 03;
Developing Optimized Adaptive Interventions in Education. Almirall, Daniel; Kasari, Connie; McCaffrey, Daniel F; Nahum-Shani, Inbal Journal of research on educational effectiveness. 29552270 2018;
Predicting Daily Activities From Egocentric Images Using Deep Learning. Castro, Daniel; Hickson, Steven; Bettadapura, Vinay; Thomaz, Edison; Abowd, Gregory; Christensen, Henrik; Essa, Irfan Proceedings. International Symposium on Wearable Computers. 29553145 2015 Aug;
Linear assembly of a human centromere on the Y chromosome. Jain, Miten; Olsen, Hugh E; Turner, Daniel J; Stoddart, David; Bulazel, Kira V; Paten, Benedict; Haussler, David; Willard, Huntington F; Akeson, Mark; Miga, Karen H Nature biotechnology. 29553574 2018 Mar 19;
Extending the Construct Network of Trait Disinhibition to the Neuroimaging Domain: Validation of a Bridging Scale for Use in the European IMAGEN Project. Brislin, Sarah J; Patrick, Christopher J; Flor, Herta; Nees, Frauke; Heinrich, Angela; Drislane, Laura E; Yancey, James R; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; van Noort, Betteke; Grimmer, Yvonne; Fadai, Tahmine; Schumann, Gunter; Foell, Jens Assessment. 29557190 2019 06;
PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets. Martínez-Bartolomé, Salvador; Medina-Aunon, J Alberto; López-García, Miguel Ángel; González-Tejedo, Carmen; Prieto, Gorka; Navajas, Rosana; Salazar-Donate, Emilio; Fernández-Costa, Carolina; Yates 3rd, John R; Albar, Juan Pablo Journal of proteome research. 29558135 2018 04 06;
QSAR-Driven Design and Discovery of Novel Compounds With Antiplasmodial and Transmission Blocking Activities. Lima, Marilia N N; Melo-Filho, Cleber C; Cassiano, Gustavo C; Neves, Bruno J; Alves, Vinicius M; Braga, Rodolpho C; Cravo, Pedro V L; Muratov, Eugene N; Calit, Juliana; Bargieri, Daniel Y; Costa, Fabio T M; Andrade, Carolina H Frontiers in pharmacology. 29559909 2018;
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. Thybert, David; Roller, Maša; Navarro, Fábio C P; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janoušek, Václav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C; Laukaitis, Christina M; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M; Odom, Duncan T; Flicek, Paul Genome research 29563166 2018 Apr
Biomedical informatics and machine learning for clinical genomics. Diao, James A; Kohane, Isaac S; Manrai, Arjun K Human molecular genetics. 29566172 2018 May 01;
Interaction between striatal volume and DAT1 polymorphism predicts working memory development during adolescence. Nemmi, F; Nymberg, C; Darki, F; Banaschewski, T; Bokde, A L W; Büchel, C; Flor, H; Frouin, V; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Nees, F; Paus, T; Smolka, M N; Robbins, T W; Schumann, G; Klingberg, T; IMAGEN consortium Developmental cognitive neuroscience. 29567584 2018 04;
Genetic Drivers of Pancreatic Islet Function. Keller, Mark P; Gatti, Daniel M; Schueler, Kathryn L; Rabaglia, Mary E; Stapleton, Donnie S; Simecek, Petr; Vincent, Matthew; Allen, Sadie; Broman, Aimee Teo; Bacher, Rhonda; Kendziorski, Christina; Broman, Karl W; Yandell, Brian S; Churchill, Gary A; Att Genetics. 29567659 2018 05;
Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression. Wilson, Ander; Zigler, Corwin M; Patel, Chirag J; Dominici, Francesca Biometrics. 29569228 2018 09;
Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines. Ellrott, Kyle; Bailey, Matthew H; Saksena, Gordon; Covington, Kyle R; Kandoth, Cyriac; Stewart, Chip; Hess, Julian; Ma, Singer; Chiotti, Kami E; McLellan, Michael; Sofia, Heidi J; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li; MC3 Working Group; Cancer Genome Atlas Research Network Cell systems. 29596782 2018 Mar 28;
SnapVX: A Network-Based Convex Optimization Solver. Hallac, David; Wong, Christopher; Diamond, Steven; Sharang, Abhijit; Sosi?, Rok; Boyd, Stephen; Leskovec, Jure Journal of machine learning research : JMLR. 29599649 2017;
Optimizing Digital Integrated Care via Micro-Randomized Trials. Walton, Ashley; Nahum-Shani, Inbal; Crosby, Lori; Klasnja, Predrag; Murphy, Susan Clinical pharmacology and therapeutics. 29604043 2018 Mar 31;
Physical activity is associated with changes in knee cartilage microstructure. Halilaj, E; Hastie, T J; Gold, G E; Delp, S L Osteoarthritis and cartilage. 29605382 2018 Jun;
Binary Classifier Calibration Using an Ensemble of Piecewise Linear Regression Models. Naeini, Mahdi Pakdaman; Cooper, Gregory F Knowledge and information systems. 29606784 2018 Jan;
Implementing Wearable Sensors for Continuous Assessment of Daytime Heart Rate Response in Inpatient Rehabilitation. Weeks, Douglas L; Sprint, Gina L; Stilwill, Virgeen; Meisen-Vehrs, Amy Lou; Cook, Diane J Telemedicine journal and e-health : the official journal of the American Telemedicine Association. 29608421 2018 Apr 02;
Structural dynamics is a determinant of the functional significance of missense variants. Ponzoni, Luca; Bahar, Ivet Proceedings of the National Academy of Sciences of the United States of America. 29610305 2018 Apr 17;
Presurgical localization and spatial shift of resting state networks in patients with brain metastases. Ding, Ju-Rong; Zhu, Fangmei; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Thompson, Paul M Brain imaging and behavior. 29611075 2018 Apr 02;
Magnetic resonance imaging does not reveal structural alterations in the brain of grapheme-color synesthetes. Dojat, Michel; Pizzagalli, Fabrizio; Hupé, Jean-Michel PloS one. 29617401 2018;
Cell-centred meta-analysis reveals baseline predictors of anti-TNF? non-response in biopsy and blood of patients with IBD. Gaujoux, Renaud; Starosvetsky, Elina; Maimon, Naama; Vallania, Francesco; Bar-Yoseph, Haggai; Pressman, Sigal; Weisshof, Roni; Goren, Idan; Rabinowitz, Keren; Waterman, Matti; Yanai, Henit; Dotan, Iris; Sabo, Edmond; Chowers, Yehuda; Khatri, Purvesh; Shen-Orr, Shai S; Israeli IBD research Network (IIRN) Gut. 29618496 2019 04;
Opportunities and obstacles for deep learning in biology and medicine. Ching, Travers; Himmelstein, Daniel S; Beaulieu-Jones, Brett K; Kalinin, Alexandr A; Do, Brian T; Way, Gregory P; Ferrero, Enrico; Agapow, Paul-Michael; Zietz, Michael; Hoffman, Michael M; Xie, Wei; Rosen, Gail L; Lengerich, Benjamin J; Israeli, Johnny; L Journal of the Royal Society, Interface. 29618526 2018 Apr;
Content Is King: Databases Preserve the Collective Information of Science. Yates 3rd, John R Journal of biomolecular techniques : JBT. 29618955 2018 Apr;
Ketamine and ketamine metabolites as novel estrogen receptor ligands: Induction of cytochrome P450 and AMPA glutamate receptor gene expression. Ho, Ming-Fen; Correia, Cristina; Ingle, James N; Kaddurah-Daouk, Rima; Wang, Liewei; Kaufmann, Scott H; Weinshilboum, Richard M Biochemical pharmacology. 29621538 2018 Jun;
Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture. Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose Stroke. 29622625 2018 May;
Computer-Aided Discovery and Characterization of Novel Ebola Virus Inhibitors. Capuzzi, Stephen J; Sun, Wei; Muratov, Eugene N; Martínez-Romero, Carles; He, Shihua; Zhu, Wenjun; Li, Hao; Tawa, Gregory; Fisher, Ethan G; Xu, Miao; Shinn, Paul; Qiu, Xiangguo; García-Sastre, Adolfo; Zheng, Wei; Tropsha, Alexander Journal of medicinal chemistry. 29624387 2018 04 26;
Using Smart City Technology to Make Healthcare Smarter. Cook, Diane J; Duncan, Glen; Sprint, Gina; Fritz, Roschelle Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. 29628528 2018 Apr;
RSTensorFlow: GPU Enabled TensorFlow for Deep Learning on Commodity Android Devices. Alzantot, Moustafa; Wang, Yingnan; Ren, Zhengshuang; Srivastava, Mani B MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. 29629431 2017 Jun;
Emu: Engagement Modeling for User Studies. Ho, Bo-Jhang; Nikzad, Nima; Balaji, Bharathan; Srivastava, Mani Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). 29629432 2017 Sep;
CIDER: Enhancing the Performance of Computational Eyeglasses. Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, Deepak Proceedings. Eye Tracking Research & Applications Symposium. 29629433 2016 Mar;
SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications. Kalinin, Alexandr A; Palanimalai, Selvam; Dinov, Ivo D Proceedings of the 2nd Workshop on Human-In-the-Loop Data Analytics. Workshop on Human-In-the-Loop Data Analytics (2nd : 2017 : Chicago, Ill.). 29630069 2017 Apr;
Massive mining of publicly available RNA-seq data from human and mouse. Lachmann, Alexander; Torre, Denis; Keenan, Alexandra B; Jagodnik, Kathleen M; Lee, Hoyjin J; Wang, Lily; Silverstein, Moshe C; Ma'ayan, Avi Nature communications. 29636450 ;
Whole Brain Magnetic Resonance Spectroscopic Determinants of Functional Outcomes in Pediatric Moderate/Severe Traumatic Brain Injury. Babikian, Talin; Alger, Jeffry R; Ellis-Blied, Monica U; Giza, Christopher C; Dennis, Emily; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeff; Thompson, Paul M; Asarnow, Robert F Journal of neurotrauma. 29649959 2018 07 15;
Effects of green tea on miRNA and microbiome of oral epithelium. Adami, Guy R; Tangney, Christy C; Tang, Jessica L; Zhou, Yalu; Ghaffari, Saba; Naqib, Ankur; Sinha, Saurabh; Green, Stefan J; Schwartz, Joel L Scientific reports. 29651001 2018 Apr 12;
Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments. Canver, Matthew C; Haeussler, Maximilian; Bauer, Daniel E; Orkin, Stuart H; Sanjana, Neville E; Shalem, Ophir; Yuan, Guo-Cheng; Zhang, Feng; Concordet, Jean-Paul; Pinello, Luca Nature protocols 29651054 2018 May
Individual differences in stop-related activity are inflated by the adaptive algorithm in the stop signal task. D'Alberto, Nicholas; Chaarani, Bader; Orr, Catherine A; Spechler, Philip A; Albaugh, Matthew D; Allgaier, Nicholas; Wonnell, Alexander; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Itterman, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Robbins, Trevor W; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh Human brain mapping. 29656430 2018 Apr 15;
Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation. Kim, Miran; Song, Yongsoo; Wang, Shuang; Xia, Yuhou; Jiang, Xiaoqian JMIR medical informatics. 29666041 2018 Apr 17;
SeleCon: Scalable IoT Device Selection and Control Using Hand Gestures. Alanwar, Amr; Alzantot, Moustafa; Ho, Bo-Jhang; Martin, Paul; Srivastava, Mani IoTDI 2017 : 2017 IEEE/ACM Second International Conference on Internet-of-Things Design and Implementation : proceedings : 18-20 April 2017, Pittsburgh, Pennsylvania, USA. IoTDI (Conference) (2nd : 2017 : Pittsburgh, Pa.). 29683151 2017 Apr;
Multimodal Teaching Analytics: Automated Extraction of Orchestration Graphs from Wearable Sensor Data. Prieto, Luis P; Sharma, Kshitij; Kidzinski, ?ukasz; Rodríguez-Triana, María Jesús; Dillenbourg, Pierre Journal of computer assisted learning. 29686446 2018 Apr;
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. Vita, Randi; Overton, James A; Mungall, Christopher J; Sette, Alessandro; Peters, Bjoern Database : the journal of biological databases and curation. 29688354 2018 01 01;
Micropublication: incentivizing community curation and placing unpublished data into the public domain. Raciti, Daniela; Yook, Karen; Harris, Todd W; Schedl, Tim; Sternberg, Paul W Database : the journal of biological databases and curation. 29688367 2018 01 01;
Testing associations between cannabis use and subcortical volumes in two large population-based samples. Gillespie, Nathan A; Neale, Michael C; Bates, Timothy C; Eyler, Lisa T; Fennema-Notestine, Christine; Vassileva, Jasmin; Lyons, Michael J; Prom-Wormley, Elizabeth C; McMahon, Katie L; Thompson, Paul M; de Zubicaray, Greig; Hickie, Ian B; McGrath, John J; Strike, Lachlan T; Rentería, Miguel E; Panizzon, Matthew S; Martin, Nicholas G; Franz, Carol E; Kremen, William S; Wright, Margaret J Addiction (Abingdon, England). 29691937 2018 Apr 24;
Deep learning in pharmacogenomics: from gene regulation to patient stratification. Kalinin, Alexandr A; Higgins, Gerald A; Reamaroon, Narathip; Soroushmehr, Sayedmohammadreza; Allyn-Feuer, Ari; Dinov, Ivo D; Najarian, Kayvan; Athey, Brian D Pharmacogenomics. 29697304 2018 05;
Personal Omics for Precision Health. Kellogg, Ryan A; Dunn, Jessilyn; Snyder, Michael P Circulation research. 29700064 2018 04 27;
Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine. NULL Circulation research. 29700073 2018 Apr 27;
A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. NULL Scientific reports. 29700343 2018 Apr 26;
Quantifying predictive capability of electronic health records for the most harmful breast cancer. Wu, Yirong; Fan, Jun; Peissig, Peggy; Berg, Richard; Tafti, Ahmad Pahlavan; Yin, Jie; Yuan, Ming; Page, David; Cox, Jennifer; Burnside, Elizabeth S Proceedings of SPIE--the International Society for Optical Engineering. 29706685 2018 Feb;
Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. Agniel, Denis; Kohane, Isaac S; Weber, Griffin M BMJ (Clinical research ed.). 29712648 2018 04 30;
Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Mulugeta, Lealem; Drach, Andrew; Erdemir, Ahmet; Hunt, C A; Horner, Marc; Ku, Joy P; Myers Jr, Jerry G; Vadigepalli, Rajanikanth; Lytton, William W Frontiers in neuroinformatics. 29713272 2018;
Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization. Ponzoni, Luca; Zhang, She; Cheng, Mary Hongying; Bahar, Ivet Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 29735731 2018 06 19;
Uniform resolution of compact identifiers for biomedical data. Wimalaratne, Sarala M; Juty, Nick; Kunze, John; Janée, Greg; McMurry, Julie A; Beard, Niall; Jimenez, Rafael; Grethe, Jeffrey S; Hermjakob, Henning; Martone, Maryann E; Clark, Tim Scientific data. 29737976 2018 05 08;
Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease. Gao, Chao; Sun, Hanbo; Wang, Tuo; Tang, Ming; Bohnen, Nicolaas I; Müller, Martijn L T M; Herman, Talia; Giladi, Nir; Kalinin, Alexandr; Spino, Cathie; Dauer, William; Hausdorff, Jeffrey M; Dinov, Ivo D Scientific reports. 29740058 2018 05 08;
A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. Zhao, Yongan; Wang, Xiaofeng; Tang, Haixu Journal of computational biology : a journal of computational molecular cell biology. 29741956 2018 06;
Diverse reprogramming codes for neuronal identity. Tsunemoto, Rachel; Lee, Sohyon; Sz?cs, Attila; Chubukov, Pavel; Sokolova, Irina; Blanchard, Joel W; Eade, Kevin T; Bruggemann, Jacob; Wu, Chunlei; Torkamani, Ali; Sanna, Pietro Paolo; Baldwin, Kristin K Nature. 29743677 2018 05;
Magnetic resonance spectroscopy of fiber tracts in children with traumatic brain injury: A combined MRS - Diffusion MRI study. Dennis, Emily L; Babikian, Talin; Alger, Jeffry; Rashid, Faisal; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F Human brain mapping. 29749094 2018 May 10;
Assigning matrix metalloproteinase roles in ischaemic cardiac remodelling. Lindsey, Merry L Nature reviews. Cardiology. 29752454 2018 May 11;
HUMAN DECISIONS AND MACHINE PREDICTIONS. Kleinberg, Jon; Lakkaraju, Himabindu; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil The quarterly journal of economics. 29755141 2018 Feb 01;
A Constraint Optimization Approach to Causal Discovery from Subsampled Time Series Data. Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, David International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. 29755201 2017 Nov;
Pharmacovigilance via Baseline Regularization with Large-Scale Longitudinal Observational Data. Kuang, Zhaobin; Peissig, Peggy; Costa, Vítor Santos; Maclin, Richard; Page, David KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29755826 2017 Aug;
Experiences with Deriva: An Asset Management Platform for Accelerating eScience. Bugacov, Alejandro; Czajkowski, Karl; Kesselman, Carl; Kumar, Anoop; Schuler, Robert E; Tangmunarunkit, Hongsuda Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. 29756001 2017 Oct;
ERMrest: A Collaborative Data Catalog with Fine Grain Access Control. Czajkowski, Karl; Kesselman, Carl; Schuler, Robert Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. 29756002 2017 Oct;
Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. Grove, Christian; Cain, Scott; Chen, Wen J; Davis, Paul; Harris, Todd; Howe, Kevin L; Kishore, Ranjana; Lee, Raymond; Paulini, Michael; Raciti, Daniela; Tuli, Mary Ann; Van Auken, Kimberly; Williams, Gary; WormBase Consortium Methods in molecular biology (Clifton, N.J.). 29761466 2018;
Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium. Kong, Xiang-Zhen; Mathias, Samuel R; Guadalupe, Tulio; ENIGMA Laterality Working Group; Glahn, David C; Franke, Barbara; Crivello, Fabrice; Tzourio-Mazoyer, Nathalie; Fisher, Simon E; Thompson, Paul M; Francks, Clyde Proceedings of the National Academy of Sciences of the United States of America. 29764998 ;
Privacy-Preserving Predictive Modeling: Harmonization of Contextual Embeddings From Different Sources. Huang, Yingxiang; Lee, Junghye; Wang, Shuang; Sun, Jimeng; Liu, Hongfang; Jiang, Xiaoqian JMIR medical informatics 29769172 2018 May 16
Population-Scale Pervasive Health. Althoff, Tim IEEE pervasive computing. 29770105 Oct-Dec 2017
Snorkel: Rapid Training Data Creation with Weak Supervision. Ratner, Alexander; Bach, Stephen H; Ehrenberg, Henry; Fries, Jason; Wu, Sen; Ré, Christopher Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 29770249 ;
Network Inference via the Time-Varying Graphical Lasso. Hallac, David; Park, Youngsuk; Boyd, Stephen; Leskovec, Jure KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29770256 ;
Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data. Hallac, David; Vare, Sagar; Boyd, Stephen; Leskovec, Jure KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29770257 ;
Local Higher-Order Graph Clustering. Yin, Hao; Benson, Austin R; Leskovec, Jure; Gleich, David F KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29770258 ;
The Mouse Heart Attack Research Tool 1.0 database. DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ma, Yonggang; Yabluchanskiy, Andriy; Zamilpa, Rogelio; Chiao, Ying Ann; Cannon, Presley L; Kaplan, Abdullah; Cates, Courtney A; Flynn, Elizabeth R; Halade, Ganesh V; de Castro Brás, Lisandra E; Lindse American journal of physiology. Heart and circulatory physiology. 29775405 2018 Sep 01;
Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease. Liem, David A; Murali, Sanjana; Sigdel, Dibakar; Shi, Yu; Wang, Xuan; Shen, Jiaming; Choi, Howard; Caufield, John H; Wang, Wei; Ping, Peipei; Han, JiaWei American journal of physiology. Heart and circulatory physiology. 29775406 2018 Oct 01;
Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology. Bae, J Alexander; Mu, Shang; Kim, Jinseop S; Turner, Nicholas L; Tartavull, Ignacio; Kemnitz, Nico; Jordan, Chris S; Norton, Alex D; Silversmith, William M; Prentki, Rachel; Sorek, Marissa; David, Celia; Jones, Devon L; Bland, Doug; Sterling, Amy L R; Park, Jungman; Briggman, Kevin L; Seung, H Sebastian; Eyewirers Cell. 29775596 2018 05 17;
Development of an Algorithm to Identify Patients with Physician-Documented Insomnia. Kartoun, Uri; Aggarwal, Rahul; Beam, Andrew L; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Kohane, Isaac S; Shaw, Stanley Y Scientific reports. 29777125 2018 May 18;
The Selective Labels Problem: Evaluating Algorithmic Predictions in the Presence of Unobservables. Lakkaraju, Himabindu; Kleinberg, Jon; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 29780658 2017 Aug;
Modeling Individual Cyclic Variation in Human Behavior. Pierson, Emma; Althoff, Tim; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 29780976 2018 Apr;
Modeling Interdependent and Periodic Real-World Action Sequences. Kurashima, Takeshi; Althoff, Tim; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 29780977 2018 Apr;
I'll Be Back: On the Multiple Lives of Users of a Mobile Activity Tracking Application. Lin, Zhiyuan; Althoff, Tim; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 29780978 2018 Apr;
Weighted SGD for ? p Regression with Randomized Preconditioning. Yang, Jiyan; Chow, Yin-Lam; Ré, Christopher; Mahoney, Michael W Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. 29782626 2016 Jan;
Classifying Alzheimer's disease with brain imaging and genetic data using a neural network framework. Ning, Kaida; Chen, Bo; Sun, Fengzhu; Hobel, Zachary; Zhao, Lu; Matloff, Will; Alzheimer's Disease Neuroimaging Initiative; Toga, Arthur W Neurobiology of aging. 29784544 2018 Aug;
Stressful Life Events, ADHD Symptoms, and Brain Structure in Early Adolescence. Humphreys, Kathryn L; Watts, Emily L; Dennis, Emily L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H Journal of abnormal child psychology. 29785533 2018 May 21;
PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine P Journal of the American Medical Informatics Association : JAMIA. 29788308 2018 10 01;
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). Lill, Jennie R; van Veelen, Peter A; Tenzer, Stefan; Admon, Arie; Caron, Etienne; Elias, Joshua E; Heck, Albert J R; Marcilla, Miguel; Marino, Fabio; Müller, Markus; Peters, Bjoern; Purcell, Anthony; Sette, Alessandro; Sturm, Theo; Ternette, Nicola; Vizca Proteomics. 29791771 2018 Jun;
A Flow Procedure for Linearization of Genome Sequence Graphs. Haussler, David; Smuga-Otto, Maciej; Eizenga, Jordan M; Paten, Benedict; Novak, Adam M; Nikitin, Sergei; Zueva, Maria; Miagkov, Dmitrii Journal of computational biology : a journal of computational molecular cell biology. 29792514 2018 07;
Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews. Cheng Ye, M S; Fabbri, Daniel Journal of biomedical informatics. 29793071 ;
Progress Toward Cancer Data Ecosystems. Grossman, Robert L Cancer journal (Sudbury, Mass.). 29794537 2018 May/Jun;
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks. Clarke, Daniel J B; Kuleshov, Maxim V; Schilder, Brian M; Torre, Denis; Duffy, Mary E; Keenan, Alexandra B; Lachmann, Alexander; Feldmann, Axel S; Gundersen, Gregory W; Silverstein, Moshe C; Wang, Zichen; Ma'ayan, Avi Nucleic acids research. 29800326 2018 Jul 02;
Multi-Descriptor Read Across (MuDRA): A Simple and Transparent Approach for Developing Accurate Quantitative Structure-Activity Relationship Models. Alves, Vinicius M; Golbraikh, Alexander; Capuzzi, Stephen J; Liu, Kammy; Lam, Wai In; Korn, Daniel Robert; Pozefsky, Diane; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, Alexander Journal of chemical information and modeling. 29809005 2018 06 25;
Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms. Can, Anil; Rudy, Robert F; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose Stroke. 29844027 2018 Jul;
Framing Electronic Medical Records as Polylingual Documents in Query Expansion. Huang, Edward W; Wang, Sheng; Lee, Doris Jung-Lin; Zhang, Runshun; Liu, Baoyan; Zhou, Xuezhong; Zhai, ChengXiang AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854161 2017;
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark A AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854196 2017;
Mining Hierarchies and Similarity Clusters from Value Set Repositories. Peterson, Kevin J; Jiang, Guoqian; Brue, Scott M; Shen, Feichen; Liu, Hongfang AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854206 2017;
A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, Lucila AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854240 2017;
SCOTCH: Secure Counting Of encrypTed genomiC data using a Hybrid approach. Chenghong, Wang; Jiang, Yichen; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Al Aziz, Md Momin; Sadat, Md Nazmus; Wang, Shuang AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854245 2017;
Association between inflammation and systolic blood pressure in RA compared to patients without RA. Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine P Arthritis research & therapy. 29855349 2018 Jun 01;
Quantifying the Impact of Rare and Ultra-rare Coding Variation across the Phenotypic Spectrum. Ganna, Andrea; Satterstrom, F Kyle; Zekavat, Seyedeh M; Das, Indraniel; Kurki, Mitja I; Churchhouse, Claire; Alfoldi, Jessica; Martin, Alicia R; Havulinna, Aki S; Byrnes, Andrea; Thompson, Wesley K; Nielsen, Philip R; Karczewski, Konrad J; Saarentaus, Elm American journal of human genetics. 29861106 2018 Jun 07;
Big data sharing and analysis to advance research in post-traumatic epilepsy. Duncan, Dominique; Vespa, Paul; Pitkänen, Asla; Braimah, Adebayo; Lapinlampi, Niina; Toga, Arthur W Neurobiology of disease. 29864492 2018 Jun 01;
The Added Value of Diffusion-Weighted MRI-Derived Structural Connectome in Evaluating Mild Cognitive Impairment: A Multi-Cohort Validation1. Wang, Qi; Guo, Lei; Thompson, Paul M; Jack, Clifford R; Dodge, Hiroko; Zhan, Liang; Zhou, Jiayu; Alzheimer?s Disease Neuroimaging Initiative and National Alzheimer?s Coordinating Center Journal of Alzheimer's disease : JAD. 29865049 2018;
Acute changes in foot strike pattern and cadence affect running parameters associated with tibial stress fractures. Yong, Jennifer R; Silder, Amy; Montgomery, Kate L; Fredericson, Michael; Delp, Scott L Journal of biomechanics. 29866518 2018 Jul 25;
Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, Jaideep IEEE internet computing. 29867290 2018 Mar-Apr;
Mapping macrophage polarization over the myocardial infarction time continuum. Mouton, Alan J; DeLeon-Pennell, Kristine Y; Rivera Gonzalez, Osvaldo J; Flynn, Elizabeth R; Freeman, Tom C; Saucerman, Jeffrey J; Garrett, Michael R; Ma, Yonggang; Harmancey, Romain; Lindsey, Merry L Basic research in cardiology. 29868933 2018 Jun 04;
Data Programming: Creating Large Training Sets, Quickly. Ratner, Alexander; De Sa, Christopher; Wu, Sen; Selsam, Daniel; Ré, Christopher Advances in neural information processing systems. 29872252 2016 Dec;
Predicting Adverse Drug Effects from Literature- and Database-Mined Assertions. La, Mary K; Sedykh, Alexander; Fourches, Denis; Muratov, Eugene; Tropsha, Alexander Drug safety. 29876834 2018 Jun 06;
High-resolution comparative analysis of great ape genomes. Kronenberg, Zev N; Fiddes, Ian T; Gordon, David; Murali, Shwetha; Cantsilieris, Stuart; Meyerson, Olivia S; Underwood, Jason G; Nelson, Bradley J; Chaisson, Mark J P; Dougherty, Max L; Munson, Katherine M; Hastie, Alex R; Diekhans, Mark; Hormozdiari, Fere Science (New York, N.Y.). 29880660 ;
Multiple Testing of Submatrices of a Precision Matrix with Applications to Identification of Between Pathway Interactions. Xia, Yin; Cai, Tianxi; Cai, T Tony Journal of the American Statistical Association. 29881130 ;
Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation. Fiddes, Ian T; Armstrong, Joel; Diekhans, Mark; Nachtweide, Stefanie; Kronenberg, Zev N; Underwood, Jason G; Gordon, David; Earl, Dent; Keane, Thomas; Eichler, Evan E; Haussler, David; Stanke, Mario; Paten, Benedict Genome research. 29884752 ;
What's in a Note? Unpacking Predictive Value in Clinical Note Representations. Boag, Willie; Doss, Dustin; Naumann, Tristan; Szolovits, Peter AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888035 2018;
Real-time Protection of Genomic Data Sharing in Beacon Services. Bu, Diyue; Wang, Xiaofeng; Tang, Haixu AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888039 2018;
Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data. Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Liu, Sijia; Liu, Hongfang; Jiang, Guoqian AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888045 2018;
Utility of Genetic Testing in Addition to Mammography for Determining Risk of Breast Cancer Depends on Patient Age. Feld, Shara I; Fan, Jun; Yuan, Ming; Wu, Yirong; Woo, Kaitlin M; Alexandridis, Roxana; Burnside, Elizabeth S AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888046 2018;
A Crowdsourcing Framework for Medical Data Sets. Ye, Cheng; Coco, Joseph; Epishova, Anna; Hajaj, Chen; Bogardus, Henry; Novak, Laurie; Denny, Joshua; Vorobeychik, Yevgeniy; Lasko, Thomas; Malin, Bradley; Fabbri, Daniel AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 29888085 2018;
Network-based approaches to examining stress in the adolescent brain. Ho, Tiffany C; Dennis, Emily L; Thompson, Paul M; Gotlib, Ian H Neurobiology of stress. 29888310 2018 Feb;
The initiation of cannabis use in adolescence is predicted by sex-specific psychosocial and neurobiological features. Spechler, Philip A; Allgaier, Nicholas; Chaarani, Bader; Whelan, Robert; Watts, Richard; Orr, Catherine; Albaugh, Matthew D; D'Alberto, Nicholas; Higgins, Stephen T; Hudson, Kelsey E; Mackey, Scott; Potter, Alexandra; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Althoff, Robert R; Garavan, Hugh; IMAGEN Consortium The European journal of neuroscience. 29889330 2019 08;
Large-scale mapping of cortical alterations in 22q11.2 deletion syndrome: Convergence with idiopathic psychosis and effects of deletion size. Sun, Daqiang; Ching, Christopher R K; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Villalon-Reina, Julio E; Qu, Xiaoping; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Vorstman, Jacob; Fiksinski, Ania; Koops, Sanne; Ruparel, Kosha; Roalf, David R; Gur, Raquel E; Schmitt, J Eric; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Bassett, Anne S; Chow, Eva W C; Butcher, Nancy J; Vila-Rodriguez, Fidel; Doherty, Joanne; Cunningham, Adam; van den Bree, Marianne B M; Linden, David E J; Moss, Hayley; Owen, Michael J; Murphy, Kieran C; McDonald-McGinn, Donna M; Emanuel, Beverly; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Bearden, Carrie E Molecular psychiatry. 29895892 2018 Jun 13;
Prompting Technology and Persons With Dementia: The Significance of Context and Communication. Braley, Rachel; Fritz, Rochelle; Van Son, Catherine R; Schmitter-Edgecombe, Maureen The Gerontologist 29897450 2019 01 09
Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation. Hanson, Casey; Cairns, Junmei; Wang, Liewei; Sinha, Saurabh Genome research. 29898900 2018 08;
Causal Discovery from Temporally Aggregated Time Series. Gong, Mingming; Zhang, Kun; Schölkopf, Bernhard; Glymour, Clark; Tao, Dacheng Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. 29899680 2017 Aug;
A Hierarchical Framework for State-Space Matrix Inference and Clustering. Zuo, Chandler; Chen, Kailei; Hewitt, Kyle J; Bresnick, Emery H; Kele?, Sündüz The annals of applied statistics. 29910842 2016 Sep;
Reg-ulating macrophage infiltration to alter wound healing following myocardial infarction. Lindsey, Merry L Cardiovascular research. 29912288 2018 Oct 01;
Ventromedial Prefrontal Volume in Adolescence Predicts Hyperactive/Inattentive Symptoms in Adulthood. Albaugh, Matthew D; Ivanova, Masha; Chaarani, Bader; Orr, Catherine; Allgaier, Nicholas; Althoff, Robert R; D' Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Penttilä, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra S Cerebral cortex (New York, N.Y. : 1991). 29912404 2019 05 01;
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. Stathias, Vasileios; Koleti, Amar; Vidovi?, Du?ica; Cooper, Daniel J; Jagodnik, Kathleen M; Terryn, Raymond; Forlin, Michele; Chung, Caty; Torre, Denis; Ayad, Nagi; Medvedovic, Mario; Ma'ayan, Avi; Pillai, Ajay; Schürer, Stephan C Scientific data. 29917015 2018 Jun 19;
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. Readhead, Ben; Haure-Mirande, Jean-Vianney; Funk, Cory C; Richards, Matthew A; Shannon, Paul; Haroutunian, Vahram; Sano, Mary; Liang, Winnie S; Beckmann, Noam D; Price, Nathan D; Reiman, Eric M; Schadt, Eric E; Ehrlich, Michelle E; Gandy, Sam; Dudley, Joel T Neuron. 29937276 2018 Jul 11;
Fonduer: Knowledge Base Construction from Richly Formatted Data. NULL Proceedings. ACM-Sigmod International Conference on Management of Data. 29937618 2018 Jun;
Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. Savage, Jeanne E; Jansen, Philip R; Stringer, Sven; Watanabe, Kyoko; Bryois, Julien; de Leeuw, Christiaan A; Nagel, Mats; Awasthi, Swapnil; Barr, Peter B; Coleman, Jonathan R I; Grasby, Katrina L; Hammerschlag, Anke R; Kaminski, Jakob A; Karlsson, Robert; Krapohl, Eva; Lam, Max; Nygaard, Marianne; Reynolds, Chandra A; Trampush, Joey W; Young, Hannah; Zabaneh, Delilah; Hägg, Sara; Hansell, Narelle K; Karlsson, Ida K; Linnarsson, Sten; Montgomery, Grant W; Muñoz-Manchado, Ana B; Quinlan, Erin B; Schumann, Gunter; Skene, Nathan G; Webb, Bradley T; White, Tonya; Arking, Dan E; Avramopoulos, Dimitrios; Bilder, Robert M; Bitsios, Panos; Burdick, Katherine E; Cannon, Tyrone D; Chiba-Falek, Ornit; Christoforou, Andrea; Cirulli, Elizabeth T; Congdon, Eliza; Corvin, Aiden; Davies, Gail; Deary, Ian J; DeRosse, Pamela; Dickinson, Dwight; Djurovic, Srdjan; Donohoe, Gary; Conley, Emily Drabant; Eriksson, Johan G; Espeseth, Thomas; Freimer, Nelson A; Giakoumaki, Stella; Giegling, Ina; Gill, Michael; Glahn, David C; Hariri, Ahmad R; Hatzimanolis, Alex; Keller, Matthew C; Knowles, Emma; Koltai, Deborah; Konte, Bettina; Lahti, Jari; Le Hellard, Stephanie; Lencz, Todd; Liewald, David C; London, Edythe; Lundervold, Astri J; Malhotra, Anil K; Melle, Ingrid; Morris, Derek; Need, Anna C; Ollier, William; Palotie, Aarno; Payton, Antony; Pendleton, Neil; Poldrack, Russell A; Räikkönen, Katri; Reinvang, Ivar; Roussos, Panos; Rujescu, Dan; Sabb, Fred W; Scult, Matthew A; Smeland, Olav B; Smyrnis, Nikolaos; Starr, John M; Steen, Vidar M; Stefanis, Nikos C; Straub, Richard E; Sundet, Kjetil; Tiemeier, Henning; Voineskos, Aristotle N; Weinberger, Daniel R; Widen, Elisabeth; Yu, Jin; Abecasis, Goncalo; Andreassen, Ole A; Breen, Gerome; Christiansen, Lene; Debrabant, Birgit; Dick, Danielle M; Heinz, Andreas; Hjerling-Leffler, Jens; Ikram, M Arfan; Kendler, Kenneth S; Martin, Nicholas G; Medland, Sarah E; Pedersen, Nancy L; Plomin, Robert; Polderman, Tinca J C; Ripke, Stephan; van der Sluis, Sophie; Sullivan, Patrick F; Vrieze, Scott I; Wright, Margaret J; Posthuma, Danielle Nature genetics. 29942086 2018 Jul;
A design framework and exemplar metrics for FAIRness. Wilkinson, Mark D; Sansone, Susanna-Assunta; Schultes, Erik; Doorn, Peter; Bonino da Silva Santos, Luiz Olavo; Dumontier, Michel Scientific data. 29944145 2018 06 26;
Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. Smit, Dirk J A; Wright, Margaret J; Meyers, Jacquelyn L; Martin, Nicholas G; Ho, Yvonne Y W; Malone, Stephen M; Zhang, Jian; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Denys, Damiaan; Hansell, Narelle K; Hottenga, Jouke-Jan; McGue, Matt; van Beijsterveldt, Catharina E M; Jahanshad, Neda; Thompson, Paul M; Whelan, Christopher D; Medland, Sarah E; Porjesz, Bernice; Lacono, William G; Boomsma, Dorret I Human brain mapping. 29947131 2018 Jun 26;
Significant concordance of genetic variation that increases both the risk for obsessive-compulsive disorder and the volumes of the nucleus accumbens and putamen. Hibar, Derrek P; Cheung, Joshua W; Medland, Sarah E; Mufford, Mary S; Jahanshad, Neda; Dalvie, Shareefa; Ramesar, Raj; Stewart, Evelyn; van den Heuvel, Odile A; Pauls, David L; Knowles, James A; Stein, Dan J; Thompson, Paul M; Enhancing Neuro Imaging Genetics through Meta Analysis (ENIGMA) Consortium and International Obsessive Compulsive Disorder Foundation Genetics Collaborative (IOCDF-GC) The British journal of psychiatry : the journal of mental science. 29947313 2018 Jul;
Talking the Walk: Perceptions of Neighborhood Characteristics from Users of Open Streets Programs in Latin America and the USA. Zieff, Susan G; Musselman, Elaine A; Sarmiento, Olga L; Gonzalez, Silvia A; Aguilar-Farias, Nicolas; Winter, Sandra J; Hipp, J Aaron; Quijano, Karoll; King, Abby C Journal of urban health : bulletin of the New York Academy of Medicine. 29948785 2018 Dec;
Modeling polypharmacy side effects with graph convolutional networks. Zitnik, Marinka; Agrawal, Monica; Leskovec, Jure Bioinformatics (Oxford, England). 29949996 2018 07 01;
SigMat: a classification scheme for gene signature matching. Xiao, Jinfeng; Blatti, Charles; Sinha, Saurabh Bioinformatics (Oxford, England). 29950002 2018 Jul 01;
Prioritizing network communities. Zitnik, Marinka; Sosi?, Rok; Leskovec, Jure Nature communications. 29959323 2018 06 29;
Cortical Brain Abnormalities in 4474 Individuals With Schizophrenia and 5098 Control Subjects via the Enhancing Neuro Imaging Genetics Through Meta Analysis (ENIGMA) Consortium. van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Bustillo, Juan R; Clark, Vincent P; Agartz, Ingrid; Mueller, Bryon A; Cahn, Wiepke; de Zwarte, Sonja M C; Hulshoff Pol, Hilleke E; Kahn, René S; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Dale, Anders M; Doan, Nhat Trung; Gurholt, Tiril P; Hartberg, Cecilie B; Haukvik, Unn K; Jørgensen, Kjetil N; Lagerberg, Trine V; Melle, Ingrid; Westlye, Lars T; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Zilles, David; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Carr, Vaughan J; Catts, Stanley; Cropley, Vanessa L; Fullerton, Janice M; Green, Melissa J; Henskens, Frans A; Jablensky, Assen; Lenroot, Rhoshel K; Mowry, Bryan J; Michie, Patricia T; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Morris, Derek W; Hong, Elliot; Kochunov, Peter; Beard, Lauren M; Gur, Raquel E; Gur, Ruben C; Satterthwaite, Theodore D; Wolf, Daniel H; Belger, Aysenil; Brown, Gregory G; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; O'Leary, Daniel S; Potkin, Steven G; Preda, Adrian; Voyvodic, James; Lim, Kelvin O; McEwen, Sarah; Yang, Fude; Tan, Yunlong; Tan, Shuping; Wang, Zhiren; Fan, Fengmei; Chen, Jingxu; Xiang, Hong; Tang, Shiyou; Guo, Hua; Wan, Ping; Wei, Dong; Bockholt, Henry J; Ehrlich, Stefan; Wolthusen, Rick P F; King, Margaret D; Shoemaker, Jody M; Sponheim, Scott R; De Haan, Lieuwe; Koenders, Laura; Machielsen, Marise W; van Amelsvoort, Therese; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; McKenna, Peter J; Pomarol-Clotet, Edith; Salvador, Raymond; Corvin, Aiden; Donohoe, Gary; Kelly, Sinead; Whelan, Christopher D; Dickie, Erin W; Rotenberg, David; Voineskos, Aristotle N; Ciufolini, Simone; Radua, Joaquim; Dazzan, Paola; Murray, Robin; Reis Marques, Tiago; Simmons, Andrew; Borgwardt, Stefan; Egloff, Laura; Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Wang, Lei; Jönsson, Erik G; Koops, Sanne; Sommer, Iris E C; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Stephen, Julia M; Kwon, Jun Soo; Yun, Je-Yeon; Cannon, Dara M; McDonald, Colm; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Busatto, Geraldo F; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; Hagenaars, Saskia P; McIntosh, Andrew M; Whalley, Heather C; Lawrie, Stephen M; Knöchel, Christian; Oertel-Knöchel, Viola; Stäblein, Michael; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; McMahon, Agnes; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A Biological psychiatry. 29960671 2018 May 14;
Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. Saul, Michael C; Blatti, Charles; Yang, Wei; Bukhari, Syed A; Shpigler, Hagai Y; Troy, Joseph M; Seward, Christopher H; Sloofman, Laura; Chandrasekaran, Sriram; Bell, Alison M; Stubbs, Lisa; Robinson, Gene E; Zhao, Sihai D; Sinha, Saurabh Genes, brain, and behavior. 29968347 2018 Jul 02;
Risk Factors for Colistin Resistance among Gram-Negative Rods and Klebsiella pneumoniae Isolates. Richter, Stefan E; Miller, Loren; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A Journal of clinical microbiology 29976595 2018 09
A Screening Rule for ?1-Regularized Ising Model Estimation. Kuang, Zhaobin; Geng, Sinong; Page, David Advances in neural information processing systems. 29983538 2017 Dec;
Imaging genetics in neurodevelopmental psychopathology. Klein, Marieke; van Donkelaar, Marjolein; Verhoef, Ellen; Franke, Barbara American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. 29984470 2017 07;
Visual Analytics in Deep Learning: An Interrogative Survey for the Next Frontiers. Hohman, Fred Matthew; Kahng, Minsuk; Pienta, Robert; Chau, Duen Horng IEEE transactions on visualization and computer graphics. 29993551 2018 Jun 04;
SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution. Sadat, Md Nazmus; Al Aziz, Md Momin; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Wang, Shuang IEEE/ACM transactions on computational biology and bioinformatics. 29993695 2019 Jan-Feb;
SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol. Jiang, Yichen; Hamer, Jenny; Wang, Chenghong; Jiang, Xiaoqian; Kim, Miran; Song, Yongsoo; Xia, Yuhou; Mohammed, Noman; Sadat, Md Nazmus; Wang, Shuang IEEE/ACM transactions on computational biology and bioinformatics. 29994005 2019 Jan-Feb;
Quantitative temporal analysis of protein dynamics in cardiac remodeling. McClatchy, Daniel B; Ma, Yuanhui; Liem, David A; Ng, Dominic C M; Ping, Peipei; Yates 3rd, John R Journal of molecular and cellular cardiology. 30009778 2018 Aug;
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. Bukhari, Syed Ahmad Chan; Martínez-Romero, Marcos; O' Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Cheung, Kei-Hoi; Kleinstein, Steven H BMC bioinformatics. 30012108 2018 Jul 16;
A synthetic-diploid benchmark for accurate variant-calling evaluation. Li, Heng; Bloom, Jonathan M; Farjoun, Yossi; Fleharty, Mark; Gauthier, Laura; Neale, Benjamin; MacArthur, Daniel Nature methods. 30013044 2018 Aug;
Neural correlates of cognitive function and symptoms in attention-deficit/hyperactivity disorder in adults. Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Lin, Dongdong; Jiang, Wenhao; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, Jingyu NeuroImage. Clinical. 30013920 2018;
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. Baheti, Saurabh; Tang, Xiaojia; O'Brien, Daniel R; Chia, Nicholas; Roberts, Lewis R; Nelson, Heidi; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Kocher, Jean-Pierre A; Kalari, Krishna R BMC bioinformatics. 30016933 2018 Jul 17;
Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass. Wang, Ana Y; Thuy-Boun, Peter S; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W Journal of proteome research. 30019906 2018 09 07;
Toward Increasing Engagement in Substance Use Data Collection: Development of the Substance Abuse Research Assistant App and Protocol for a Microrandomized Trial Using Adolescents and Emerging Adults. Rabbi, Mashfiqui; Philyaw Kotov, Meredith; Cunningham, Rebecca; Bonar, Erin E; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan JMIR research protocols. 30021714 2018 Jul 18;
Comparison of privacy-protecting analytic and data-sharing methods: A simulation study. Yoshida, Kazuki; Gruber, Susan; Fireman, Bruce H; Toh, Sengwee Pharmacoepidemiology and drug safety. 30022561 2018 Sep;
MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES. Zhang, Jie; Tu, Yanshuai; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin Proceedings. IEEE International Symposium on Biomedical Imaging. 30023040 2018 Apr;
Statistical considerations in reporting cardiovascular research. Lindsey, Merry L; Gray, Gillian A; Wood, Susan K; Curran-Everett, Douglas American journal of physiology. Heart and circulatory physiology. 30028200 2018 Aug 01;
Using Virtual Reality to Improve Performance and User Experience in Manual Correction of MRI Segmentation Errors by Non-experts. Duncan, Dominique; Garner, Rachael; Zrantchev, Ivan; Ard, Tyler; Newman, Bradley; Saslow, Adam; Wanserski, Emily; Toga, Arthur W Journal of digital imaging 30030766 2019 02
Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans. Shiroishi, Mark S; Gupta, Vikash; Bigjahan, Bavrina; Cen, Steven Y; Rashid, Faisal; Hwang, Darryl H; Lerner, Alexander; Boyko, Orest B; Liu, Chia-Shang Jason; Law, Meng; Thompson, Paul M; Jahanshad, Neda Proceedings of SPIE--the International Society for Optical Engineering. 30034079 2017 Oct;
Selecting Optimal Subset to release under Differentially Private M-estimators from Hybrid Datasets. Wang, Meng; Ji, Zhanglong; Kim, Hyeon-Eui; Wang, Shuang; Xiong, Li; Jiang, Xiaoqian IEEE transactions on knowledge and data engineering. 30034201 2018 Mar 01;
Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. Jang, MiHyun; Patted, Tejal; Gil, Yolanda; Garijo, Daniel; Ratnakar, Varun; Ji, Jie; Wang, Prince; McMahon, Aggie; Thompson, Paul M; Jahanshad, Neda CEUR workshop proceedings. 30034319 2017 Oct;
ENIGMA MILITARY BRAIN INJURY: A COORDINATED META-ANALYSIS OF DIFFUSION MRI FROM MULTIPLE COHORTS. Dennis, Emily L; Wilde, Elisabeth A; Newsome, Mary R; Scheibel, Randall S; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin S C; Drennon, Ann Marie; York, Gerald E; Bigler, Erin D; Abildskov, Tracy J; Taylor, Brian A; Jaramillo, Carlos A; Eapen, Blessen; Belanger, Heather; Gupta, Vikash; Morey, Rajendra; Haswell, Courtney; Levin, Harvey S; Hinds 2nd, Sidney R; Walker, William C; Thompson, Paul M; Tate, David F Proceedings. IEEE International Symposium on Biomedical Imaging. 30034577 2018 Apr;
Learning causality and causality-related learning: some recent progress. Zhang, Kun; Schölkopf, Bernhard; Spirtes, Peter; Glymour, Clark National science review. 30034911 2018 Jan;
Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging. Petrov, Dmitry; Gutman, Boris A; Yu, Shih-Hua Julie; van Erp, Theo G M; Turner, Jessica A; Schmaal, Lianne; Veltman, Dick; Wang, Lei; Alpert, Kathryn; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Ching, Christopher R K; Calhoun, Vince; Glahn, David; Satterthwaite, Theodore D; Andreasen, Ole Andreas; Borgwardt, Stefan; Howells, Fleur; Groenewold, Nynke; Voineskos, Aristotle; Radua, Joaquim; Potkin, Steven G; Crespo-Facorro, Benedicto; Tordesillas-Gutiérrez, Diana; Shen, Li; Lebedeva, Irina; Spalletta, Gianfranco; Donohoe, Gary; Kochunov, Peter; Rosa, Pedro G P; James, Anthony; Dannlowski, Udo; Baune, Bernhard T; Aleman, André; Gotlib, Ian H; Walter, Henrik; Walter, Martin; Soares, Jair C; Ehrlich, Stefan; Gur, Ruben C; Doan, N Trung; Agartz, Ingrid; Westlye, Lars T; Harrisberger, Fabienne; Riecher-Rössler, Anita; Uhlmann, Anne; Stein, Dan J; Dickie, Erin W; Pomarol-Clotet, Edith; Fuentes-Claramonte, Paola; Canales-Rodríguez, Erick Jorge; Salvador, Raymond; Huang, Alexander J; Roiz-Santiañez, Roberto; Cong, Shan; Tomyshev, Alexander; Piras, Fabrizio; Vecchio, Daniela; Banaj, Nerisa; Ciullo, Valentina; Hong, Elliot; Busatto, Geraldo; Zanetti, Marcus V; Serpa, Mauricio H; Cervenka, Simon; Kelly, Sinead; Grotegerd, Dominik; Sacchet, Matthew D; Veer, Ilya M; Li, Meng; Wu, Mon-Ju; Irungu, Benson; Walton, Esther; Thompson, Paul M Machine learning in medical imaging. MLMI (Workshop). 30035274 2017 Sep;
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi PLoS computational biology. 30048444 2018 07;
Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling. Kim, Hosung; Caldairou, Benoit; Bernasconi, Andrea; Bernasconi, Neda Frontiers in neuroinformatics. 30050423 2018;
Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline. Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Fox, Peter T; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter Human brain mapping. 30052318 2018 Dec;
Examination of the Neural Basis of Psychoticlike Experiences in Adolescence During Reward Processing. Papanastasiou, Evangelos; Mouchlianitis, Elias; Joyce, Dan W; McGuire, Philip; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Spechler, Philip; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Shergill, Sukhwinder; IMAGEN Consortium JAMA psychiatry. 30073329 2018 10 01;
Mapping and interpreting the dynamic connectivity of the brain. Chang, Catie; Keilholz, Shella; Miller, Robyn; Woolrich, Mark NeuroImage. 30075278 2018 10 15;
Network enhancement as a general method to denoise weighted biological networks. Wang, Bo; Pourshafeie, Armin; Zitnik, Marinka; Zhu, Junjie; Bustamante, Carlos D; Batzoglou, Serafim; Leskovec, Jure Nature communications. 30082777 2018 08 06;
A tissue-based draft map of the murine MHC class I immunopeptidome. Schuster, Heiko; Shao, Wenguang; Weiss, Tobias; Pedrioli, Patrick G A; Roth, Patrick; Weller, Michael; Campbell, David S; Deutsch, Eric W; Moritz, Robert L; Planz, Oliver; Rammensee, Hans-Georg; Aebersold, Ruedi; Caron, Etienne Scientific data. 30084848 2018 08 07;
Web services for data warehouses: OMOP and PCORnet on i2b2. Klann, Jeffrey G; Phillips, Lori C; Herrick, Christopher; Joss, Matthew A H; Wagholikar, Kavishwar B; Murphy, Shawn N Journal of the American Medical Informatics Association : JAMIA. 30085008 2018 10 01;
Attention deficit hyperactivity disorder symptoms as antecedents of later psychotic outcomes in 22q11.2 deletion syndrome. Niarchou, Maria; Chawner, Samuel J R A; Fiksinski, Ania; Vorstman, Jacob A S; Maeder, Johanna; Schneider, Maude; Eliez, Stephan; Armando, Marco; Pontillo, Maria; Vicari, Stefano; McDonald-McGinn, Donna M; Emanuel, Beverly S; Zackai, Elaine H; Bearden, Carrie E; Shashi, Vandana; Hooper, Stephen R; Owen, Michael J; Gur, Raquel E; Wray, Naomi R; van den Bree, Marianne B M; Thapar, Anita; International 22q11.2 Deletion Syndrome Brain and Behavior Consortium Schizophrenia research. 30093352 2019 02;
Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. Meyer, Wynn K; Jamison, Jerrica; Richter, Rebecca; Woods, Stacy E; Partha, Raghavendran; Kowalczyk, Amanda; Kronk, Charles; Chikina, Maria; Bonde, Robert K; Crocker, Daniel E; Gaspard, Joseph; Lanyon, Janet M; Marsillach, Judit; Furlong, Clement E; Clark, Nathan L Science (New York, N.Y.). 30093596 2018 08 10;
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. Carass, Aaron; Cuzzocreo, Jennifer L; Han, Shuo; Hernandez-Castillo, Carlos R; Rasser, Paul E; Ganz, Melanie; Beliveau, Vincent; Dolz, Jose; Ben Ayed, Ismail; Desrosiers, Christian; Thyreau, Benjamin; Romero, José E; Coupé, Pierrick; Manjón, José V; Fonov NeuroImage. 30099076 2018 Dec;
Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project. Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Snyder, Michael; Baker, Mark S; Deutsch, Eric W Journal of proteome research. 30099871 2018 Aug 23;
Linkage of the ACR National Mammography Database to the Network of State Cancer Registries: Proof of Concept Evaluation by the ACR National Mammography Database Committee. Zuley, Margarita L; Nishikawa, Robert M; Lee, Cindy S; Burnside, Elizabeth; Rosenberg, Robert; Sickles, Edward A; Berg, Wendie; Leung, Jessica; Harvey, Jennifer; Sengupta, Debapriya; Gur, David Journal of the American College of Radiology : JACR. 30100161 2019 Jan;
A neurobiological pathway to smoking in adolescence: TTC12-ANKK1-DRD2 variants and reward response. Macare, Christine; Ducci, Francesca; Zhang, Yuning; Ruggeri, Barbara; Jia, Tianye; Kaakinen, Marika; Kalsi, Gursharan; Charoen, Pimphen; Casoni, Filippo; Peters, Jan; Bromberg, Uli; Hill, Matthew; Buxton, Jessica; Blakemore, Alexandra; Veijola, Juha; Büchel, Christian; Banaschewski, Tobias; Bokde, Arun L W; Conrod, Patricia; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Martinot, Jean-Luc; Paus, Tomá?; Desrivières, Sylvane; Munafò, Marcus; Järvelin, Marjo-Riitta; Schumann, Gunter; IMAGEN Consortium European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. 30104163 2018 10;
Iterative Design of Visual Analytics for a Clinician-in-the-loop Smart Home. Ghods, Alireza; Caffrey, Kathleen; Lin, Beiyu; Fraga, Kylie; Fritz, Roschelle; Schmitter-Edgecombe, Maureen; Hundhausen, Christopher; Cook, Diane J IEEE journal of biomedical and health informatics. 30106700 2018 Aug 08;
Distinct brain structure and behavior related to ADHD and conduct disorder traits. Bayard, Frida; Nymberg Thunell, Charlotte; Abé, Christoph; Almeida, Rita; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; Penttilä, Jani; Kappel, Viola; Grimmer, Yvonne; Fadai, Tahmine; van Noort, Betteke; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Petrovic, Predrag; IMAGEN Consortium Molecular psychiatry. 30108313 2020 Nov;
COMT Val158Met Polymorphism and Social Impairment Interactively Affect Attention-Deficit Hyperactivity Symptoms in Healthy Adolescents. Millenet, Sabina K; Nees, Frauke; Heintz, Stefan; Bach, Christiane; Frank, Josef; Vollstädt-Klein, Sabine; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Fröhner, Juliane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaire, Herve; Martinot, Jean-Luc; Martinot, Marie-Laure P; Papadoulos, Dimitri O; Paus, Tomá?; Poustka, Luise; Rietschel, Marcella; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Banaschewski, Tobias; Hohmann, Sarah Frontiers in genetics. 30108607 ;
HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS. Wu, Jianfeng; Zhang, Jie; Shi, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin Proceedings. IEEE International Symposium on Biomedical Imaging. 30123414 2018 Apr;
Variation graph toolkit improves read mapping by representing genetic variation in the reference. Garrison, Erik; Sirén, Jouni; Novak, Adam M; Hickey, Glenn; Eizenga, Jordan M; Dawson, Eric T; Jones, William; Garg, Shilpa; Markello, Charles; Lin, Michael F; Paten, Benedict; Durbin, Richard Nature biotechnology. 30125266 2018 Oct;
Large Scale Semi-Automated Labeling of Routine Free-Text Clinical Records for Deep Learning. Trivedi, Hari M; Panahiazar, Maryam; Liang, April; Lituiev, Dmytro; Chang, Peter; Sohn, Jae Ho; Chen, Yunn-Yi; Franc, Benjamin L; Joe, Bonnie; Hadley, Dexter Journal of digital imaging. 30128778 2019 Feb;
Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative. Halilaj, E; Le, Y; Hicks, J L; Hastie, T J; Delp, S L Osteoarthritis and cartilage. 30130590 ;
LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling. DeLeon-Pennell, Kristine Y; Mouton, Alan J; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L Basic research in cardiology. 30132266 2018 08 21;
Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study. Can, Anil; Rudy, Robert F; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose Neurology 30135253 2018 09 18
EarBit: Using Wearable Sensors to Detect Eating Episodes in Unconstrained Environments. Bedri, Abdelkareem; Li, Richard; Haynes, Malcolm; Kosaraju, Raj Prateek; Grover, Ishaan; Prioleau, Temiloluwa; Beh, Min Yan; Goel, Mayank; Starner, Thad; Abowd, Gregory Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. 30135957 2017 Sep;
Scoring Bayesian Networks of Mixed Variables. Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F International journal of data science and analytics. 30140730 2018 Aug;
Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy. NULL Journal of proteome research. 30141336 2018 Aug 31;
HiGlass: web-based visual exploration and analysis of genome interaction maps. Kerpedjiev, Peter; Abdennur, Nezar; Lekschas, Fritz; McCallum, Chuck; Dinkla, Kasper; Strobelt, Hendrik; Luber, Jacob M; Ouellette, Scott B; Azhir, Alaleh; Kumar, Nikhil; Hwang, Jeewon; Lee, Soohyun; Alver, Burak H; Pfister, Hanspeter; Mirny, Leonid A; Pa Genome biology. 30143029 2018 08 24;
Comparison of strategies for scalable causal discovery of latent variable models from mixed data. Raghu, Vineet K; Ramsey, Joseph D; Morris, Alison; Manatakis, Dimitrios V; Sprites, Peter; Chrysanthis, Panos K; Glymour, Clark; Benos, Panayiotis V International journal of data science and analytics. 30148202 2018;
Extracellular matrix roles in cardiorenal fibrosis: Potential therapeutic targets for CVD and CKD in the elderly. Toba, Hiroe; Lindsey, Merry L Pharmacology & therapeutics. 30149103 2018 Aug 25;
Smaller subcortical volume in Parkinson patients with rapid eye movement sleep behavior disorder. Kamps, Sanne; van den Heuvel, Odile A; van der Werf, Ysbrand D; Berendse, Henk W; Weintraub, Daniel; Vriend, Chris Brain imaging and behavior. 30155787 2019 Oct;
Controlled feature selection and compressive big data analytics: Applications to biomedical and health studies. Marino, Simeone; Xu, Jiachen; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Dinov, Ivo D PloS one. 30161148 2018;
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. Bukhari, Syed Ahmad Chan; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Rubelt, Florian; Cheung, Kei-Hoi; Kleinstein, Steven H Frontiers in immunology. 30166985 2018;
Maturation of the Human Cerebral Cortex During Adolescence: Myelin or Dendritic Arbor? Patel, Y; Shin, J; Gowland, P A; Pausova, Z; Paus, T; IMAGEN consortium Cerebral cortex (New York, N.Y. : 1991). 30169567 2019 07 22;
Exogenous CXCL4 Infusion Inhibits Macrophage Phagocytosis by Limiting CD36 Signaling to Enhance Post-myocardial Infarction Cardiac Dilation and Mortality. Lindsey, Merry L; Jung, Mira; Yabluchanskiy, Andriy; Cannon, Presley L; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; DeLeon-Pennell, Kristine Y; Valerio, Fritz M; Harrison, Courtney L; Ripplinger, Crystal M; Hall, Michael E; Ma, Yonggang Cardiovascular research. 30169632 2018 Aug 29;
Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures. Wang, Zichen; He, Edward; Sani, Kevin; Jagodnik, Kathleen M; Silverstein, Moshe C; Ma'ayan, Avi Bioinformatics (Oxford, England). 30169739 2019 Apr 01;
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A conceptual framework for clinicians working with artificial intelligence and health-assistive Smart Homes. Dermody, Gordana; Fritz, Roschelle Nursing inquiry. 30417510 2018 Nov 12;
Elevated allostatic load early in the course of schizophrenia. Savransky, Anya; Chiappelli, Joshua; Fisseha, Feven; Wisner, Krista M; Xiaoming, Du; Mirmomen, S Milad; Jones, Aaron D; Adhikari, Bhim M; Bruce, Heather A; Rowland, Laura M; Hong, L Elliot Translational psychiatry. 30420620 2018 Nov 12;
Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease. Tu, Yanshuai; Wen, Chengfeng; Zhang, Wen; Wu, Jianfeng; Zhang, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Reiman, Eric M; Wang, Yalin Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 30440425 2018 Jul;
A Fast Method for Estimating Statistical Power of Multivariate GWAS in Real Case Scenarios: Examples from the Field of Imaging Genetics. Couvy-Duchesne, Baptiste; Strike, Lachlan T; McMahon, Katie L; de Zubicaray, Greig I; Thompson, Paul M; Martin, Nicholas G; Medland, Sarah E; Wright, Margaret J Behavior genetics 30443694 2019 01
BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud. Torre, Denis; Lachmann, Alexander; Ma'ayan, Avi Cell systems. 30447998 2018 Nov 08;
Mutations of the mitochondrial carrier translocase channel subunit TIM22 cause early-onset mitochondrial myopathy. Pacheu-Grau, David; Callegari, Sylvie; Emperador, Sonia; Thompson, Kyle; Aich, Abhishek; Topol, Sarah E; Spencer, Emily G; McFarland, Robert; Ruiz-Pesini, Eduardo; Torkamani, Ali; Taylor, Robert W; Montoya, Julio; Rehling, Peter Human molecular genetics. 30452684 2018 12 01;
A reference set of curated biomedical data and metadata from clinical case reports. Caufield, J Harry; Zhou, Yijiang; Garlid, Anders O; Setty, Shaun P; Liem, David A; Cao, Quan; Lee, Jessica M; Murali, Sanjana; Spendlove, Sarah; Wang, Wei; Zhang, Li; Sun, Yizhou; Bui, Alex; Hermjakob, Henning; Watson, Karol E; Ping, Peipei Scientific data. 30457569 2018 Nov 20;
Model-Based and Model-Free Techniques for Amyotrophic Lateral Sclerosis Diagnostic Prediction and Patient Clustering. Tang, Ming; Gao, Chao; Goutman, Stephen A; Kalinin, Alexandr; Mukherjee, Bhramar; Guan, Yuanfang; Dinov, Ivo D Neuroinformatics. 30460455 2018 Nov 20;
Yum-Me: A Personalized Nutrient-Based Meal Recommender System. Yang, Longqi; Hsieh, Cheng-Kang; Yang, Hongjian; Pollak, John P; Dell, Nicola; Belongie, Serge; Cole, Curtis; Estrin, Deborah ACM transactions on information systems. 30464375 2017 Aug;
Learning Time Series Detection Models from Temporally Imprecise Labels. Adams, Roy J; Marlin, Benjamin M Proceedings of machine learning research. 30465043 2017 Apr;
Repurposing Citizen Science Games as Software Tools for Professional Scientists. Cooper, Seth; Sterling, Amy L R; Kleffner, Robert; Silversmith, William M; Siegel, Justin B FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. 30465045 2018 Aug;
Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers. Lituiev, Dmytro S; Trivedi, Hari; Panahiazar, Maryam; Norgeot, Beau; Seo, Youngho; Franc, Benjamin; Harnish, Roy; Kawczynski, Michael; Hadley, Dexter Journal of digital imaging. 30465142 2019 Apr;
Assessing Time-Varying Causal Effect Moderation in Mobile Health. Boruvka, Audrey; Almirall, Daniel; Witkiewitz, Katie; Murphy, Susan A Journal of the American Statistical Association. 30467446 2018;
EDGE EXCHANGEABLE MODELS FOR INTERACTION NETWORKS. Crane, Harry; Dempsey, Walter Journal of the American Statistical Association. 30467447 2018;
Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder. Athreya, Arjun; Iyer, Ravishankar; Neavin, Drew; Wang, Liewei; Weinshilboum, Richard; Kaddurah-Daouk, Rima; Rush, John; Frye, Mark; Bobo, William IEEE computational intelligence magazine. 30467458 2018 Aug;
Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities. Zitnik, Marinka; Nguyen, Francis; Wang, Bo; Leskovec, Jure; Goldenberg, Anna; Hoffman, Michael M An international journal on information fusion. 30467459 2019 Oct;
Reply to: New Meta- and Mega-analyses of Magnetic Resonance Imaging Findings in Schizophrenia: Do They Really Increase Our Knowledge About the Nature of the Disease Process? van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Clark, Vincent P; Mueller, Bryon A; de Zwarte, Sonja M C; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Gurholt, Tiril P; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Catts, Stanley; Fullerton, Janice M; Green, Melissa J; Henskens, Frans; Jablensky, Assen; Mowry, Bryan J; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Hong, Elliot; Kochunov, Peter; Gur, Raquel E; Gur, Ruben C; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; Potkin, Steven G; Preda, Adrian; Fan, Fengmei; Ehrlich, Stefan; King, Margaret D; De Haan, Lieuwe; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; Pomarol-Clotet, Edith; Kelly, Sinead; Ciufolini, Simone; Radua, Joaquim; Murray, Robin; Marques, Tiago Reis; Simmons, Andrew; Borgwardt, Stefan; Schönborn-Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Yun, Je-Yeon; Cannon, Dara M; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; McIntosh, Andrew M; Whalley, Heather C; Knöchel, Christian; Oertel-Knöchel, Viola; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A Biological psychiatry. 30470561 2019 04 01;
Protein Inference Using PIA Workflows and PSI Standard File Formats. Uszkoreit, Julian; Perez-Riverol, Yasset; Eggers, Britta; Marcus, Katrin; Eisenacher, Martin Journal of proteome research. 30474983 2019 02 01;
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Köhler, Sebastian; Carmody, Leigh; Vasilevsky, Nicole; Jacobsen, Julius O B; Danis, Daniel; Gourdine, Jean-Philippe; Gargano, Michael; Harris, Nomi L; Matentzoglu, Nicolas; McMurry, Julie A; Osumi-Sutherland, David; Cipriani, Valentina; Balhoff, James P; Conlin, Tom; Blau, Hannah; Baynam, Gareth; Palmer, Richard; Gratian, Dylan; Dawkins, Hugh; Segal, Michael; Jansen, Anna C; Muaz, Ahmed; Chang, Willie H; Bergerson, Jenna; Laulederkind, Stanley J F; Yüksel, Zafer; Beltran, Sergi; Freeman, Alexandra F; Sergouniotis, Panagiotis I; Durkin, Daniel; Storm, Andrea L; Hanauer, Marc; Brudno, Michael; Bello, Susan M; Sincan, Murat; Rageth, Kayli; Wheeler, Matthew T; Oegema, Renske; Lourghi, Halima; Della Rocca, Maria G; Thompson, Rachel; Castellanos, Francisco; Priest, James; Cunningham-Rundles, Charlotte; Hegde, Ayushi; Lovering, Ruth C; Hajek, Catherine; Olry, Annie; Notarangelo, Luigi; Similuk, Morgan; Zhang, Xingmin A; Gómez-Andrés, David; Lochmüller, Hanns; Dollfus, Hélène; Rosenzweig, Sergio; Marwaha, Shruti; Rath, Ana; Sullivan, Kathleen; Smith, Cynthia; Milner, Joshua D; Leroux, Dorothée; Boerkoel, Cornelius F; Klion, Amy; Carter, Melody C; Groza, Tudor; Smedley, Damian; Haendel, Melissa A; Mungall, Chris; Robinson, Peter N Nucleic acids research. 30476213 2019 Jan 08;
Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. Schleifer, Charles; Lin, Amy; Kushan, Leila; Ji, Jie Lisa; Yang, Genevieve; Bearden, Carrie E; Anticevic, Alan The Journal of neuroscience : the official journal of the Society for Neuroscience. 30478034 2019 Feb 13;
A primer on deep learning in genomics. Zou, James; Huss, Mikael; Abid, Abubakar; Mohammadi, Pejman; Torkamani, Ali; Telenti, Amalio Nature genetics 30478442 2019 01
High-frequency actionable pathogenic exome variants in an average-risk cohort. Rego, Shannon; Dagan-Rosenfeld, Orit; Zhou, Wenyu; Sailani, M Reza; Limcaoco, Patricia; Colbert, Elizabeth; Avina, Monika; Wheeler, Jessica; Craig, Colleen; Salins, Denis; Röst, Hannes L; Dunn, Jessilyn; McLaughlin, Tracey; Steinmetz, Lars M; Bernstein, Jonathan A; Snyder, Michael P Cold Spring Harbor molecular case studies. 30487145 2018 12;
Genomic kinship construction to enhance genetic analyses in the human connectome project data. Kochunov, Peter; Donohue, Brian; Mitchell, Braxton D; Ganjgahi, Habib; Adhikari, Bhim; Ryan, Meghann; Medland, Sarah E; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Fieremans, Els; Novikov, Dmitry S; Marcus, Daniel; Van Essen, David C; Glahn, David Human brain mapping. 30496643 2019 Apr 01;
Practical Model Selection for Prospective Virtual Screening. Liu, Shengchao; Alnammi, Moayad; Ericksen, Spencer S; Voter, Andrew F; Ananiev, Gene E; Keck, James L; Hoffmann, F Michael; Wildman, Scott A; Gitter, Anthony Journal of chemical information and modeling. 30500183 2019 Jan 28;
The Role of the Aryl Hydrocarbon Receptor (AHR) in Immune and Inflammatory Diseases. Neavin, Drew R; Liu, Duan; Ray, Balmiki; Weinshilboum, Richard M International journal of molecular sciences. 30513921 2018 Dec 03;
Exploration of Shared Genetic Architecture Between Subcortical Brain Volumes and Anorexia Nervosa. Walton, E; Hibar, D; Yilmaz, Z; Jahanshad, N; Cheung, J; Batury, V-L; Seitz, J; Bulik, C M; PGC-ED; ENIGMA Genetics Working Group; Thompson, P M; Ehrlich, Stefan Molecular neurobiology 30519816 2019 Jul
A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry. Swearingen, Kristian E; Eng, Jimmy K; Shteynberg, David; Vigdorovich, Vladimir; Springer, Timothy A; Mendoza, Luis; Sather, D Noah; Deutsch, Eric W; Kappe, Stefan H I; Moritz, Robert L Journal of proteome research. 30523691 2019 Feb 01;
Collaboration Matters: Honey Bee Health as a Transdisciplinary Model for Understanding Real-World Complexity. Suryanarayanan, Sainath; Kleinman, Daniel Lee; Gratton, Claudio; Toth, Amy; Guedot, Christelle; Groves, Russell; Piechowski, John; Moore, Brad; Hagedorn, Deborah; Kauth, Dayton; Swan, Heather; Celley, Mary Bioscience. 30524133 2018 Dec 01;
Allele-Specific Methylation of SPDEF: A Novel Moderator of Psychosocial Stress and Substance Abuse. Tay, Nicole; Macare, Christine; Liu, Yun; Ruggeri, Barbara; Jia, Tianye; Chu, Congying; Biondo, Francesca; Ing, Alex; Luo, Qiang; Sarkysian, Daniil; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Frieling, Helge; Bleich, Stefan; Barker, Edward D; Syvänen, Ann-Christine; Rüegg, Joëlle; Ekström, Tomas J; Bakalkin, Georgy; Schumann, Gunter; IMAGEN Consortium The American journal of psychiatry. 30525907 2019 02 01;
GOnet: a tool for interactive Gene Ontology analysis. Pomaznoy, Mikhail; Ha, Brendan; Peters, Bjoern BMC bioinformatics 30526489 2018 Dec 07
Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma. Hong, Na; Zhang, Ning; Wu, Huawei; Lu, Shanshan; Yu, Yue; Hou, Li; Lu, Yinying; Liu, Hongfang; Jiang, Guoqian BMC medical informatics and decision making. 30526572 2018 12 07;
Unveiling the Role of the Most Impactful Cardiovascular Risk Locus through Haplotype Editing. Lo Sardo, Valentina; Chubukov, Pavel; Ferguson, William; Kumar, Aditya; Teng, Evan L; Duran, Michael; Zhang, Lei; Cost, Gregory; Engler, Adam J; Urnov, Fyodor; Topol, Eric J; Torkamani, Ali; Baldwin, Kristin K Cell. 30528432 2018 Dec 13;
Genetic analysis of neurodegenerative diseases in a pathology cohort. Blauwendraat, Cornelis; Pletnikova, Olga; Geiger, Joshua T; Murphy, Natalie A; Abramzon, Yevgeniya; Rudow, Gay; Mamais, Adamantios; Sabir, Marya S; Crain, Barbara; Ahmed, Sarah; Rosenthal, Liana S; Bakker, Catherine C; Faghri, Faraz; Chia, Ruth; Ding, Jin Neurobiology of aging. 30528841 2019 Apr;
atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding. Shin, Sunyoung; Hudson, Rebecca; Harrison, Christopher; Craven, Mark; Kele?, Sündüz Bioinformatics (Oxford, England). 30534948 2019 08 01;
Validity of Privacy-Protecting Analytical Methods That Use Only Aggregate-Level Information to Conduct Multivariable-Adjusted Analysis in Distributed Data Networks. Li, Xiaojuan; Fireman, Bruce H; Curtis, Jeffrey R; Arterburn, David E; Fisher, David P; Moyneur, Érick; Gallagher, Mia; Raebel, Marsha A; Nowell, W Benjamin; Lagreid, Lindsay; Toh, Sengwee American journal of epidemiology. 30535131 2019 Apr 01;
Age-Related Differences in Brain Morphology and the Modifiers in Middle-Aged and Older Adults. Zhao, Lu; Matloff, William; Ning, Kaida; Kim, Hosung; Dinov, Ivo D; Toga, Arthur W Cerebral cortex (New York, N.Y. : 1991). 30535294 2019 09 13;
Peer victimization and its impact on adolescent brain development and psychopathology. Quinlan, Erin Burke; Barker, Edward D; Luo, Qiang; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium Molecular psychiatry. 30542059 2020 11;
Monitoring Online Discussions About Suicide Among Twitter Users With Schizophrenia: Exploratory Study. Hswen, Yulin; Naslund, John A; Brownstein, John S; Hawkins, Jared B JMIR mental health. 30545811 2018 Dec 13;
ADAPTIVE GRADIENT DESCENT OPTIMIZATION OF INITIAL MOMENTA FOR GEODESIC SHOOTING IN DIFFEOMORPHISMS. Fleishman, Greg M; Thompson, Paul M Proceedings. IEEE International Symposium on Biomedical Imaging. 30546823 2017 Apr;
A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization. Kuang, Zhaobin; Bao, Yujia; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Willett, Rebecca; Page, David Methods in molecular biology (Clifton, N.J.). 30547447 2019;
A nurse-driven method for developing artificial intelligence in ''smart'' homes for aging-in-place. Fritz, Roschelle L; Dermody, Gordana Nursing outlook. 30551883 2018 Nov 23;
Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon E Current biology : CB. 30554901 2019 Jan 07;
Stochastic Learning for Sparse Discrete Markov Random Fields with Controlled Gradient Approximation Error. Geng, Sinong; Kuang, Zhaobin; Liu, Jie; Wright, Stephen; Page, David Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. 30555282 2018 Aug;
Uncovering Biologically Coherent Peripheral Signatures of Health and Risk for Alzheimer's Disease in the Aging Brain. Riedel, Brandalyn C; Daianu, Madelaine; Ver Steeg, Greg; Mezher, Adam; Salminen, Lauren E; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative Frontiers in aging neuroscience. 30555318 2018;
Exchangeable Markov survival processes and weak continuity of predictive distributions. Dempsey, Walter; McCullagh, Peter Electronic journal of statistics. 30555616 2017;
Using machine learning to identify health outcomes from electronic health record data. Wong, Jenna; Horwitz, Mara Murray; Zhou, Li; Toh, Sengwee Current epidemiology reports. 30555773 2018 Dec;
BMI-related cortical morphometry changes are associated with altered white matter structure. Medic, Nenad; Kochunov, Peter; Ziauddeen, Hisham; Ersche, Karen D; Nathan, Pradeep J; Ronan, Lisa; Fletcher, Paul C International journal of obesity (2005). 30568264 2019 03;
A concise and persistent feature to study brain resting-state network dynamics: Findings from the Alzheimer's Disease Neuroimaging Initiative. Kuang, Liqun; Han, Xie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative Human brain mapping. 30569583 2019 Mar;
Pharmacokinetic-Pharmacodynamic interaction associated with venlafaxine-XR remission in patients with major depressive disorder with history of citalopram / escitalopram treatment failure. Ahmed, Ahmed T; Biernacka, Joanna M; Jenkins, Gregory; Rush, A John; Shinozaki, Gen; Veldic, Marin; Kung, Simon; Bobo, William V; Hall-Flavin, Daniel K; Weinshilboum, Richard M; Wang, Liewei; Frye, Mark A Journal of affective disorders. 30578947 2019 03 01;
BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2. Cline, Melissa S; Liao, Rachel G; Parsons, Michael T; Paten, Benedict; Alquaddoomi, Faisal; Antoniou, Antonis; Baxter, Samantha; Brody, Larry; Cook-Deegan, Robert; Coffin, Amy; Couch, Fergus J; Craft, Brian; Currie, Robert; Dlott, Chloe C; Dolman, Lena; den Dunnen, Johan T; Dyke, Stephanie O M; Domchek, Susan M; Easton, Douglas; Fischmann, Zachary; Foulkes, William D; Garber, Judy; Goldgar, David; Goldman, Mary J; Goodhand, Peter; Harrison, Steven; Haussler, David; Kato, Kazuto; Knoppers, Bartha; Markello, Charles; Nussbaum, Robert; Offit, Kenneth; Plon, Sharon E; Rashbass, Jem; Rehm, Heidi L; Robson, Mark; Rubinstein, Wendy S; Stoppa-Lyonnet, Dominique; Tavtigian, Sean; Thorogood, Adrian; Zhang, Can; Zimmermann, Marc; BRCA Challenge Authors; Burn, John; Chanock, Stephen; Rätsch, Gunnar; Spurdle, Amanda B PLoS genetics. 30586411 2018 12;
Maximizing the promise of citizen science to advance health and prevent disease. King, Abby C; Winter, Sandra J; Chrisinger, Benjamin W; Hua, Jenna; Banchoff, Ann W Preventive medicine. 30593793 2019 Feb;
Mining data and metadata from the gene expression omnibus. Wang, Zichen; Lachmann, Alexander; Ma'ayan, Avi Biophysical reviews. 30594974 2019 Feb;
Potential corner case cautions regarding publicly available implementations of the National Cancer Institute's nonwear/wear classification algorithm for accelerometer data. Moore 4th, Hyatt E; Haydel, K Farish; Banda, Jorge A; Fiterau, Madalina; Desai, Manisha; Robinson, Thomas N PloS one. 30596771 2018;
Discovering functional impacts of miRNAs in cancers using a causal deep learning model. Chen, Lujia; Lu, Xinghua BMC medical genomics. 30598118 2018 Dec 31;
Using High-Resolution Variant Frequencies Empowers Clinical Genome Interpretation and Enables Investigation of Genetic Architecture. Whiffin, Nicola; Roberts, Angharad M; Minikel, Eric; Zappala, Zach; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Harrison, Steven M; Thomson, Kate L; Sage, Helen; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel G; Ware, James S American journal of human genetics. 30609406 2019 01 03;
Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality. Soler Artigas, María; Sánchez-Mora, Cristina; Rovira, Paula; Richarte, Vanesa; Garcia-Martínez, Iris; Pagerols, Mireia; Demontis, Ditte; Stringer, Sven; ADHD Group of the Psychiatric Genomics Consortium, International Cannabis Consortium; Vink, Jacqueline M; Børglum, Anders D; Neale, Benjamin M; Franke, Barbara; Faraone, Stephen V; Casas, Miguel; Ramos-Quiroga, Josep Antoni; Ribasés, Marta Molecular psychiatry. 30610198 2020 Oct;
A Monte Carlo Approach to Skill-Based Automated Playtesting. Horn, Britton; Miller, Josh Aaron; Smith, Gillian; Cooper, Seth Proceedings. AAAI Artificial Intelligence and Interactive Digital Entertainment Conference. 30613687 2018 Nov;
Notch signaling activation induces cell death in MAPKi-resistant melanoma cells. Mikheil, Dareen M; Prabhakar, Kirthana; Arshad, Ayyan; Rodriguez, Carlos I; Newton, Michael A; Setaluri, Vijayasaradhi Pigment cell & melanoma research. 30614626 2019 Jan 07;
Decreased brain connectivity in smoking contrasts with increased connectivity in drinking. Cheng, Wei; Rolls, Edmund T; Robbins, Trevor W; Gong, Weikang; Liu, Zhaowen; Lv, Wujun; Du, Jingnan; Wen, Hongkai; Ma, Liang; Quinlan, Erin Burke; Garavan, Hugh; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Smolka, Michael N; Schumann, Gunter; Kendrick, Keith; Feng, Jianfeng eLife. 30616717 2019 Jan 08;
Analytic Tools for Post-traumatic Epileptogenesis Biomarker Search in Multimodal Dataset of an Animal Model and Human Patients. Duncan, Dominique; Barisano, Giuseppe; Cabeen, Ryan; Sepehrband, Farshid; Garner, Rachael; Braimah, Adebayo; Vespa, Paul; Pitkänen, Asla; Law, Meng; Toga, Arthur W Frontiers in neuroinformatics. 30618695 2018;
Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes. Hejblum, Boris P; Weber, Griffin M; Liao, Katherine P; Palmer, Nathan P; Churchill, Susanne; Shadick, Nancy A; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi Scientific data. 30620344 2019 Jan 08;
Fibroblast polarization over the myocardial infarction time continuum shifts roles from inflammation to angiogenesis. Mouton, Alan J; Ma, Yonggang; Rivera Gonzalez, Osvaldo J; Daseke 2nd, Michael J; Flynn, Elizabeth R; Freeman, Tom C; Garrett, Michael R; DeLeon-Pennell, Kristine Y; Lindsey, Merry L Basic research in cardiology 30635789 2019 Jan 11
Creating custom Foldit puzzles for teaching biochemistry. Dsilva, Lorna; Mittal, Shubhi; Koepnick, Brian; Flatten, Jeff; Cooper, Seth; Horowitz, Scott Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology. 30638297 2019 Jan 14;
The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology. Schnetz, Michael P; Hochheiser, Harry S; Danks, David J; Landsittel, Douglas P; Vogt, Keith M; Ibinson, James W; Whitehurst, Steven L; McDermott, Sean P; Duque, Melissa Giraldo; Kaynar, Ata M BMC medical research methodology. 30642260 2019 Jan 14;
Grey Matter Volume Differences Associated with Extremely Low Levels of Cannabis Use in Adolescence. Orr, Catherine; Spechler, Philip; Cao, Zhipeng; Albaugh, Matthew; Chaarani, Bader; Mackey, Scott; D'Souza, Deepak; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Radhakrishnan, Rajiv; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra; Garavan, Hugh The Journal of neuroscience : the official journal of the Society for Neuroscience. 30643026 2019 Mar 06;
Development and Validation of an Electronic Health Record-Based Machine Learning Model to Estimate Delirium Risk in Newly Hospitalized Patients Without Known Cognitive Impairment. Wong, Andrew; Young, Albert T; Liang, April S; Gonzales, Ralph; Douglas, Vanja C; Hadley, Dexter JAMA network open. 30646095 2018 08 03;
Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2. Dudenkov, Tanda M; Liu, Duan; Cairns, Junmei; Devarajan, Sandhya; Zhuang, Yongxian; Ingle, James N; Buzdar, Aman U; Robson, Mark E; Kubo, Michiaki; Batzler, Anthony; Barman, Poulami; Jenkins, Gregory D; Carlson, Erin E; Goetz, Matthew P; Northfelt, Donald W; Moreno-Aspitia, Alvaro; Desta, Zeruesenay; Reid, Joel M; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard M Clinical pharmacology and therapeutics. 30648747 2019 Jan 16;
PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient. Kalari, Krishna R; Sinnwell, Jason P; Thompson, Kevin J; Tang, Xiaojia; Carlson, Erin E; Yu, Jia; Vedell, Peter T; Ingle, James N; Weinshilboum, Richard M; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Suman, Vera JCO clinical cancer informatics. 30652605 2018 12;
A Potential Role for the STXBP5-AS1 Gene in Adult ADHD Symptoms. Arias-Vásquez, A; Groffen, A J; Spijker, S; Ouwens, K G; Klein, M; Vojinovic, D; Galesloot, T E; Bralten, J; Hottenga, J J; van der Most, P J; Kattenberg, V M; Pool, R; Nolte, I M; Penninx, B W J H; Fedko, I O; Dolan, C V; Nivard, M G; den Braber, A; van Duijn, C M; Hoekstra, P J; Buitelaar, J K; Kiemeney, L A; Hoogman, M; Middeldorp, C M; Draisma, H H M; Vermeulen, S H; Sánchez-Mora, C; Ramos-Quiroga, J A; Ribasés, M; EAGLE-ADHD Consortium; Hartman, C A; Kooij, J J S; Amin, N; Smit, A B; Franke, B; Boomsma, D I Behavior genetics. 30659475 2019 05;
A Data Analysis Method for Using Longitudinal Binary Outcome Data from a SMART to Compare Adaptive Interventions. Dziak, John J; Yap, Jamie R T; Almirall, Daniel; McKay, James R; Lynch, Kevin G; Nahum-Shani, Inbal Multivariate behavioral research. 30663401 2019 Jan 20;
Reproducible grey matter patterns index a multivariate, global alteration of brain structure in schizophrenia and bipolar disorder. Schwarz, Emanuel; Doan, Nhat Trung; Pergola, Giulio; Westlye, Lars T; Kaufmann, Tobias; Wolfers, Thomas; Brecheisen, Ralph; Quarto, Tiziana; Ing, Alex J; Carlo, Pasquale Di; Gurholt, Tiril P; Harms, Robbert L; Noirhomme, Quentin; Moberget, Torgeir; Agartz, Ingrid; Andreassen, Ole A; Bellani, Marcella; Bertolino, Alessandro; Blasi, Giuseppe; Brambilla, Paolo; Buitelaar, Jan K; Cervenka, Simon; Flyckt, Lena; Frangou, Sophia; Franke, Barbara; Hall, Jeremy; Heslenfeld, Dirk J; Kirsch, Peter; McIntosh, Andrew M; Nöthen, Markus M; Papassotiropoulos, Andreas; de Quervain, Dominique J-F; Rietschel, Marcella; Schumann, Gunter; Tost, Heike; Witt, Stephanie H; Zink, Mathias; Meyer-Lindenberg, Andreas; IMAGEMEND Consortium, Karolinska Schizophrenia Project (KaSP) Consortium Translational psychiatry. 30664633 2019 Jan 17;
Context-Specific Nested Effects Models. Sverchkov, Yuriy; Ho, Yi-Hsuan; Gasch, Audrey; Craven, Mark Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005-). 30680375 2018 Apr;
The principles of tomorrow's university. Katz, Daniel S; Allen, Gabrielle; Barba, Lorena A; Berg, Devin R; Bik, Holly; Boettiger, Carl; Borgman, Christine L; Brown, C Titus; Buck, Stuart; Burd, Randy; de Waard, Anita; Eve, Martin Paul; Granger, Brian E; Greenberg, Josh; Howe, Adina; Howe, Bill; Khanna, May; Killeen, Timothy L; Mayernik, Matthew; McKiernan, Erin; Mentzel, Chris; Merchant, Nirav; Niemeyer, Kyle E; Noren, Laura; Nusser, Sarah M; Reed, Daniel A; Seidel, Edward; Smith, MacKenzie; Spies, Jeffrey R; Turk, Matt; Van Horn, John D; Walsh, Jay F1000Research. 30687499 2018;
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Hoffmann, Nils; Rein, Joel; Sachsenberg, Timo; Hartler, Jürgen; Haug, Kenneth; Mayer, Gerhard; Alka, Oliver; Dayalan, Saravanan; Pearce, Jake T M; Rocca-Serra, Philippe; Qi, Da; Eisenacher, Martin; Perez-Riverol, Yasset; Vizcaíno, Juan Antonio; Salek, Reza M; Neumann, Steffen; Jones, Andrew R Analytical chemistry. 30688441 2019 Mar 05;
Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data. Grossman, Robert L Trends in genetics : TIG. 30691868 2019 Mar;
Machine Learning and Integrative Analysis of Biomedical Big Data. Mirza, Bilal; Wang, Wei; Wang, Jie; Choi, Howard; Chung, Neo Christopher; Ping, Peipei Genes. 30696086 2019 01 28;
Concordance of genetic variation that increases risk for anxiety disorders and posttraumatic stress disorders and that influences their underlying neurocircuitry. van der Merwe, Celia; Jahanshad, Neda; Cheung, Josh W; Mufford, Mary; Groenewold, Nynke A; Koen, Nastassja; Ramesar, Rajkumar; Dalvie, Shareefa; ENIGMA Consortium PGC-PTSD; Knowles, James A; Hibar, Derrek P; Nievergelt, Caroline M; Koenen, Karestan C; Liberzon, Israel; Ressler, Kerry J; Medland, Sarah E; Morey, Rajendra A; Thompson, Paul M; Stein, Dan J Journal of affective disorders. 30699873 2019 02 15;
Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD. Chen, Guocai; Jia, Yuxi; Zhu, Lisha; Li, Ping; Zhang, Lin; Tao, Cui; Jim Zheng, W BMC medical informatics and decision making. 30700303 2019 Jan 31;
An Acute Randomized Controlled Trial of Noninvasive Peripheral Nerve Stimulation in Essential Tremor. Pahwa, Rajesh; Dhall, Rohit; Ostrem, Jill; Gwinn, Ryder; Lyons, Kelly; Ro, Susie; Dietiker, Cameron; Luthra, Nijee; Chidester, Paula; Hamner, Samuel; Ross, Erika; Delp, Scott Neuromodulation : journal of the International Neuromodulation Society. 30701655 2019 Jul;
Automatic real-time gait event detection in children using deep neural networks. Kidzi?ski, ?ukasz; Delp, Scott; Schwartz, Michael PloS one. 30703141 2019;
Selecting precise reference normal tissue samples for cancer research using a deep learning approach. Zeng, William Z D; Glicksberg, Benjamin S; Li, Yangyan; Chen, Bin BMC medical genomics. 30704474 2019 Jan 31;
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The Cortical Neuroimmune Regulator TANK Affects Emotional Processing and Enhances Alcohol Drinking: A Translational Study. Müller, Christian P; Chu, Congying; Qin, Liya; Liu, Chunyu; Xu, Bing; Gao, He; Ruggeri, Barbara; Hieber, Saskia; Schneider, Julia; Jia, Tianye; Tay, Nicole; Akira, Shizuo; Satoh, Takashi; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Artiges, Eric; Lemaitre, Herve; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Bakalkin, Georgy; Liu, Yun; Desrivières, Sylvane; Elliott, Paul; Eulenburg, Volker; Levy, Daniel; Crews, Fulton; Schumann, Gunter Cerebral cortex (New York, N.Y. : 1991). 30721969 2019 04 01;
Predicting opioid dependence from electronic health records with machine learning. Ellis, Randall J; Wang, Zichen; Genes, Nicholas; Ma'ayan, Avi BioData mining. 30728857 2019;
Glycoproteomic Profiling Provides Candidate Myocardial Infarction Predictors of Later Progression to Heart Failure. Deleon-Pennell, Kristine Y; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L ACS omega. 30729226 2019 Jan 31;
Objective risk stratification of prostate cancer using machine learning and radiomics applied to multiparametric magnetic resonance images. Varghese, Bino; Chen, Frank; Hwang, Darryl; Palmer, Suzanne L; De Castro Abreu, Andre Luis; Ukimura, Osamu; Aron, Monish; Aron, Manju; Gill, Inderbir; Duddalwar, Vinay; Pandey, Gaurav Scientific reports. 30733585 2019 Feb 07;
ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model. Yu, Yue; Ruddy, Kathryn J; Hong, Na; Tsuji, Shintaro; Wen, Andrew; Shah, Nilay D; Jiang, Guoqian Journal of biomedical informatics. 30738946 2019 Mar;
Feature extraction for phenotyping from semantic and knowledge resources. Ning, Wenxin; Chan, Stephanie; Beam, Andrew; Yu, Ming; Geva, Alon; Liao, Katherine; Mullen, Mary; Mandl, Kenneth D; Kohane, Isaac; Cai, Tianxi; Yu, Sheng Journal of biomedical informatics. 30738949 2019 Mar;
Feasibility of using social media to monitor outdoor air pollution in London, England. Hswen, Yulin; Qin, Qiuyuan; Brownstein, John S; Hawkins, Jared B Preventive medicine. 30742873 2019 04;
Sex-specific deficits in neurite density and white matter integrity are associated with targeted disruption of exon 2 of the Disc1 gene in the rat. Barnett, Brian R; Torres-Velázquez, Maribel; Yi, Sue Y; Rowley, Paul A; Sawin, Emily A; Rubinstein, C Dustin; Krentz, Kathleen; Anderson, Jacqueline M; Bakshi, Vaishali P; Yu, John-Paul J Translational psychiatry 30745562 2019 Feb 11
DPPred: An Effective Prediction Framework with Concise Discriminative Patterns. Shang, Jingbo; Jiang, Meng; Tong, Wenzhu; Xiao, Jinfeng; Peng, Jian; Han, Jiawei; Pooled Resource Open-Access ALS Clinical Trials Consortium* IEEE transactions on knowledge and data engineering. 30745791 2018 Jul;
Using Twitter to Detect Psychological Characteristics of Self-Identified Persons With Autism Spectrum Disorder: A Feasibility Study. Hswen, Yulin; Gopaluni, Anuraag; Brownstein, John S; Hawkins, Jared B JMIR mHealth and uHealth 30747718 2019 Feb 12
Hyperbolic Wasserstein Distance for Shape Indexing. Shi, Jie; Wang, Yalin IEEE transactions on pattern analysis and machine intelligence. 30763239 2019 Feb 08;
Evolution of resilience in protein interactomes across the tree of life. Zitnik, Marinka; Sosi?, Rok; Feldman, Marcus W; Leskovec, Jure Proceedings of the National Academy of Sciences of the United States of America. 30765515 2019 Mar 05;
Progressive brain atrophy in chronically infected and treated HIV+ individuals. Nir, Talia M; Jahanshad, Neda; Ching, Christopher R K; Cohen, Ronald A; Harezlak, Jaroslaw; Schifitto, Giovanni; Lam, Hei Y; Hua, Xue; Zhong, Jianhui; Zhu, Tong; Taylor, Michael J; Campbell, Thomas B; Daar, Eric S; Singer, Elyse J; Alger, Jeffry R; Thomps Journal of neurovirology. 30767174 2019 Feb 14;
Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders. Pearl, Jocelynn R; Colantuoni, Carlo; Bergey, Dani E; Funk, Cory C; Shannon, Paul; Basu, Bijoya; Casella, Alex M; Oshone, Rediet T; Hood, Leroy; Price, Nathan D; Ament, Seth A Cell systems. 30772379 2019 02 27;
An Integrated Analysis of Neural Network Correlates of Categorical and Dimensional Models of Attention-Deficit/Hyperactivity Disorder. Pruim, Raimon H R; Beckmann, Christian F; Oldehinkel, Marianne; Oosterlaan, Jaap; Heslenfeld, Dirk; Hartman, Catharina A; Hoekstra, Pieter J; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Mennes, Maarten Biological psychiatry. Cognitive neuroscience and neuroimaging. 30773473 2019 05;
Instance-Specific Bayesian Network Structure Learning. Jabbari, Fattaneh; Visweswaran, Shyam; Cooper, Gregory F Proceedings of machine learning research. 30775723 2018 Sep;
Racial Differences in Maintaining Optimal Health Behaviors Into Middle Age. Booth 3rd, John N; Allen, Norrina B; Calhoun, David; Carson, April P; Deng, Luqin; Goff Jr, David C; Redden, David T; Reis, Jared P; Shimbo, Daichi; Shikany, James M; Sidney, Stephen; Spring, Bonnie; Lewis, Cora E; Muntner, Paul American journal of preventive medicine. 30777156 2019 Mar;
The variable quality of metadata about biological samples used in biomedical experiments. Gonçalves, Rafael S; Musen, Mark A Scientific data. 30778255 2019 Feb 19;
Crowdsourcing to delineate skin affected by chronic graft-vs-host disease. Tkaczyk, Eric R; Coco, Joseph R; Wang, Jianing; Chen, Fuyao; Ye, Cheng; Jagasia, Madan H; Dawant, Benoit M; Fabbri, Daniel Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI). 30786065 2019 Jul;
Wearable Sleep Technology in Clinical and Research Settings. DE Zambotti, Massimiliano; Cellini, Nicola; Goldstone, Aimée; Colrain, Ian M; Baker, Fiona C Medicine and science in sports and exercise. 30789439 2019 07;
Estimating feedforward and feedback effective connections from fMRI time series: Assessments of statistical methods. Sanchez-Romero, Ruben; Ramsey, Joseph D; Zhang, Kun; Glymour, Madelyn R K; Huang, Biwei; Glymour, Clark Network neuroscience (Cambridge, Mass.). 30793083 2019;
A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards: From Sequencer to Electronic Health Record. Campbell, Walter S; Carter, Alexis B; Cushman-Vokoun, Allison M; Greiner, Timothy C; Dash, Rajesh C; Routbort, Mark; de Baca, Monica E; Campbell, James R The Journal of molecular diagnostics : JMD. 30797065 2019 Feb 20;
Just-in-Time but Not Too Much: Determining Treatment Timing in Mobile Health. Liao, Peng; Dempsey, Walter; Sarker, Hillol; Hossain, Syed Monowar; Al'absi, Mustafa; Klasnja, Predrag; Murphy, Susan Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. 30801052 2018 Dec;
Pubertal maturation and sex effects on the default-mode network connectivity implicated in mood dysregulation. Ernst, Monique; Benson, Brenda; Artiges, Eric; Gorka, Adam X; Lemaitre, Herve; Lago, Tiffany; Miranda, Ruben; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Translational psychiatry. 30804326 2019 Feb 25;
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0). Mi, Huaiyu; Muruganujan, Anushya; Huang, Xiaosong; Ebert, Dustin; Mills, Caitlin; Guo, Xinyu; Thomas, Paul D Nature protocols. 30804569 2019 03;
Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP. Hong, Na; Wen, Andrew; Mojarad, Majid Rastegar; Sohn, Sunghwan; Liu, Hongfang; Jiang, Guoqian AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815098 2018;
Automated Population of an i2b2 Clinical Data Warehouse using FHIR. Solbrig, Harold R; Hong, Na; Murphy, Shawn N; Jiang, Guoqian AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815141 2018;
Privacy-preserving biomedical data dissemination via a hybrid approach. Jiang, Yichen; Wang, Chenghong; Wu, Zhixuan; Du, Xin; Wang, Shuang AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815160 2018;
Improving breast cancer risk prediction by using demographic risk factors, abnormality features on mammograms and genetic variants. Feld, Shara I; Woo, Kaitlin M; Alexandridis, Roxana; Wu, Yirong; Liu, Jie; Peissig, Peggy; Onitilo, Adedayo A; Cox, Jennifer; Page, C David; Burnside, Elizabeth S AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815167 2018;
Genetic Markers of ADHD-Related Variations in Intracranial Volume. Klein, Marieke; Walters, Raymond K; Demontis, Ditte; Stein, Jason L; Hibar, Derrek P; Adams, Hieab H; Bralten, Janita; Roth Mota, Nina; Schachar, Russell; Sonuga-Barke, Edmund; Mattheisen, Manuel; Neale, Benjamin M; Thompson, Paul M; Medland, Sarah E; Børglum, Anders D; Faraone, Stephen V; Arias-Vasquez, Alejandro; Franke, Barbara The American journal of psychiatry. 30818988 2019 03 01;
A Probabilistic Model to Support Radiologists' Classification Decisions in Mammography Practice. Zeng, Jiaming; Gimenez, Francisco; Burnside, Elizabeth S; Rubin, Daniel L; Shachter, Ross Medical decision making : an international journal of the Society for Medical Decision Making. 30819048 2019 04;
Enhancing safe routes to school programs through community-engaged citizen science: two pilot investigations in lower density areas of Santa Clara County, California, USA. Rodriguez, Nicole M; Arce, Alisa; Kawaguchi, Alice; Hua, Jenna; Broderick, Bonnie; Winter, Sandra J; King, Abby C BMC public health. 30823917 2019 Mar 01;
Distributed learning from multiple EHR databases: Contextual embedding models for medical events. Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, Qi Journal of biomedical informatics. 30825539 2019 Apr;
Federated discovery and sharing of genomic data using Beacons. Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena Nature biotechnology. 30833764 2019 03;
Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon E Current biology : CB. 30836076 2019 Mar 04;
Resting-state brain information flow predicts cognitive flexibility in humans. Chén, Oliver Y; Cao, Hengyi; Reinen, Jenna M; Qian, Tianchen; Gou, Jiangtao; Phan, Huy; De Vos, Maarten; Cannon, Tyrone D Scientific reports. 30846746 2019 03 07;
How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM). Küçük McGinty, Hande; Visser, Ubbo; Schürer, Stephan Methods in molecular biology (Clifton, N.J.). 30848456 2019;
Leveraging Big Data to Transform Drug Discovery. Glicksberg, Benjamin S; Li, Li; Chen, Rong; Dudley, Joel; Chen, Bin Methods in molecular biology (Clifton, N.J.). 30848458 2019;
Unsupervised classification of multi-omics data during cardiac remodeling using deep learning. Chung, Neo Christopher; Mirza, Bilal; Choi, Howard; Wang, Jie; Wang, Ding; Ping, Peipei; Wang, Wei Methods (San Diego, Calif.). 30853547 2019 Mar 07;
Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. Wang, Wenhao; Chen, Guoxing; Pan, Xiaorui; Zhang, Yinqian; Wang, XiaoFeng; Bindschaedler, Vincent; Tang, Haixu; Gunter, Carl A Conference on Computer and Communications Security : proceedings of the ... conference on computer and communications security. ACM Conference on Computer and Communications Security. 30853868 2017 Oct-Nov;
Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications. Sigdel, Dibakar; Kyi, Vincent; Zhang, Aiden; Setty, Shaun P; Liem, David A; Shi, Yu; Wang, Xuan; Shen, Jiaming; Wang, Wei; Han, JiaWei; Ping, Peipei Journal of visualized experiments : JoVE. 30855564 2019 02 23;
SynSys: A Synthetic Data Generation System for Healthcare Applications. Dahmen, Jessamyn; Cook, Diane Sensors (Basel, Switzerland). 30857130 2019 Mar 08;
Risk Factors for Development of Carbapenem Resistance Among Gram-Negative Rods. Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A Open forum infectious diseases. 30863785 2019 Mar;
Mapping causal pathways from genetics to neuropsychiatric disorders using genome-wide imaging genetics: Current status and future directions. Le, Brandon D; Stein, Jason L Psychiatry and clinical neurosciences. 30864184 2019 Jul;
AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets. Hu, Zhiyue Tom; Ye, Yuting; Newbury, Patrick A; Huang, Haiyan; Chen, Bin Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 30864327 2019;
When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data. Gürsoy, Gamze; Harmanci, Arif; Tang, Haixu; Ayday, Erman; Brenner, Steven E Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 30864339 2019
Ancestral characterization of 1018 cancer cell lines highlights disparities and reveals gene expression and mutational differences. Kessler, Michael D; Bateman, Nicholas W; Conrads, Thomas P; Maxwell, George L; Dunning Hotopp, Julie C; O'Connor, Timothy D Cancer. 30865299 2019 Mar 13;
ShortFuse: Biomedical Time Series Representations in the Presence of Structured Information. Fiterau, Madalina; Bhooshan, Suvrat; Fries, Jason; Bournhonesque, Charles; Hicks, Jennifer; Halilaj, Eni; Ré, Christopher; Delp, Scott Proceedings of machine learning research. 30882086 2017 Aug;
Learning the Structure of Generative Models without Labeled Data. Bach, Stephen H; He, Bryan; Ratner, Alexander; Ré, Christopher Proceedings of machine learning research. 30882087 2017 Aug;
The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia: design, results and future prospects. Middeldorp, Christel M; Felix, Janine F; Mahajan, Anubha; EArly Genetics Lifecourse Epidemiology (EAGLE) consortium; Early Growth Genetics (EGG) consortium; McCarthy, Mark I European journal of epidemiology. 30887376 2019 Mar;
Concordance of genetic variation that increases risk for tourette syndrome and that influences its underlying neurocircuitry. Mufford, Mary; Cheung, Josh; Jahanshad, Neda; van der Merwe, Celia; Ding, Linda; Groenewold, Nynke; Koen, Nastassja; Chimusa, Emile R; Dalvie, Shareefa; Ramesar, Raj; Knowles, James A; Lochner, Christine; Hibar, Derrek P; Paschou, Peristera; van den Heuvel, Odile A; Medland, Sarah E; Scharf, Jeremiah M; Mathews, Carol A; Thompson, Paul M; Stein, Dan J; Psychiatric Genomics Consortium - Tourette Syndrome working group Translational psychiatry. 30902966 2019 Mar 22;
ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data. Manjunath, Mohith; Zhang, Yi; Yeo, Steve H; Sobh, Omar; Russell, Nathan; Followell, Christian; Bushell, Colleen; Ravaioli, Umberto; Song, Jun S PeerJ. Computer science. 30906871 2018;
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Creating a digital memory notebook application for individuals with mild cognitive impairment to support everyday functioning. Raghunath, Nisha; Dahmen, Jessamyn; Brown, Katelyn; Cook, Diane; Schmitter-Edgecombe, Maureen Disability and rehabilitation. Assistive technology 30907223 2020 05
Comparison of blockchain platforms: a systematic review and healthcare examples. Kuo, Tsung-Ting; Zavaleta Rojas, Hugo; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA. 30907419 2019 05 01;
Toward Sensor-Based Sleep Monitoring with Electrodermal Activity Measures. Romine, William; Banerjee, Tanvi; Goodman, Garrett Sensors (Basel, Switzerland) 30909430 2019 Mar 22
Mechanical activation of noncoding-RNA-mediated regulation of disease-associated phenotypes in human cardiomyocytes. Kumar, Aditya; Thomas, Stephanie K; Wong, Kirsten C; Lo Sardo, Valentina; Cheah, Daniel S; Hou, Yang-Hsun; Placone, Jesse K; Tenerelli, Kevin P; Ferguson, William C; Torkamani, Ali; Topol, Eric J; Baldwin, Kristin K; Engler, Adam J Nature biomedical engineering. 30911429 2019 Feb;
Anticipating innovations in structural biology. Berman, Helen M; Lawson, Catherine L; Vallat, Brinda; Gabanyi, Margaret J Quarterly reviews of biophysics. 30912485 2018 01;
Standardizing Analytic Methods and Reporting in Activity Monitor Validation Studies. Welk, Gregory J; Bai, Yang; Lee, Jung-Min; Godino, Job; Saint-Maurice, Pedro F; Carr, Lucas Medicine and science in sports and exercise. 30913159 2019 08;
Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. Kochunov, Peter; Patel, Binish; Ganjgahi, Habib; Donohue, Brian; Ryan, Meghann; Hong, Elliot L; Chen, Xu; Adhikari, Bhim; Jahanshad, Neda; Thompson, Paul M; Van't Ent, Dennis; den Braber, Anouk; de Geus, Eco J C; Brouwer, Rachel M; Boomsma, Dorret I; Hulshoff Pol, Hilleke E; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Nichols, Thomas E Frontiers in neuroinformatics. 30914942 2019;
Learning the Network Structure of Heterogeneous Data via Pairwise Exponential Markov Random Fields. Park, Youngsuk; Hallac, David; Boyd, Stephen; Leskovec, Jure Proceedings of machine learning research. 30931433 2017 Apr;
Snorkel MeTaL: Weak Supervision for Multi-Task Learning. Ratner, Alex; Hancock, Braden; Dunnmon, Jared; Goldman, Roger; Ré, Christopher Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). 30931438 2018 Jun;
Learning one's genetic risk changes physiology independent of actual genetic risk. Turnwald, Bradley P; Goyer, J Parker; Boles, Danielle Z; Silder, Amy; Delp, Scott L; Crum, Alia J Nature human behaviour. 30932047 2019 Jan;
Unveiling the Kinomes of Leishmania infantum and L. braziliensis Empowers the Discovery of New Kinase Targets and Antileishmanial Compounds. Borba, Joyce V B; Silva, Arthur C; Ramos, Pablo I P; Grazzia, Nathalia; Miguel, Danilo C; Muratov, Eugene N; Furnham, Nicholas; Andrade, Carolina H Computational and structural biotechnology journal. 30949306 2019;
Causal Discovery from Discrete Data using Hidden Compact Representation. Cai, Ruichu; Qiao, Jie; Zhang, Kun; Zhang, Zhenjie; Hao, Zhifeng Advances in neural information processing systems. 30956519 2018 Dec;
HDDA: DataSifter: statistical obfuscation of electronic health records and other sensitive datasets. Marino, Simeone; Zhou, Nina; Zhao, Yi; Wang, Lu; Wu, Qiucheng; Dinov, Ivo D Journal of statistical computation and simulation. 30962669 2018;
A data citation roadmap for scholarly data repositories. Fenner, Martin; Crosas, Mercè; Grethe, Jeffrey S; Kennedy, David; Hermjakob, Henning; Rocca-Serra, Phillippe; Durand, Gustavo; Berjon, Robin; Karcher, Sebastian; Martone, Maryann; Clark, Tim Scientific data. 30971690 2019 04 10;
Multi-domain Causal Structure Learning in Linear Systems. Ghassami, AmirEmad; Kiyavash, Negar; Huang, Biwei; Zhang, Kun Advances in neural information processing systems. 30971863 2018 Dec;
Modeling Dynamic Missingness of Implicit Feedback for Recommendation. Wang, Menghan; Gong, Mingming; Zheng, Xiaolin; Zhang, Kun Advances in neural information processing systems. 30971864 2018 Dec;
Reproducible big data science: A case study in continuous FAIRness. Madduri, Ravi; Chard, Kyle; D'Arcy, Mike; Jung, Segun C; Rodriguez, Alexis; Sulakhe, Dinanath; Deutsch, Eric; Funk, Cory; Heavner, Ben; Richards, Matthew; Shannon, Paul; Glusman, Gustavo; Price, Nathan; Kesselman, Carl; Foster, Ian PloS one. 30973881 2019;
Predictive Big Data Analytics using the UK Biobank Data. Zhou, Yiwang; Zhao, Lu; Zhou, Nina; Zhao, Yi; Marino, Simeone; Wang, Tuo; Sun, Hanbo; Toga, Arthur W; Dinov, Ivo D Scientific reports. 30979917 2019 Apr 12;
Assessing the value of a censored surrogate outcome. Parast, Layla; Tian, Lu; Cai, Tianxi Lifetime data analysis. 30980316 2019 Apr 12;
ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets. Pullman, Benjamin S; Wertz, Julie; Carver, Jeremy; Bandeira, Nuno Journal of proteome research. 30985146 2018 12 07;
Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms. Can, Anil; Lai, Pui Man Rosalind; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose Scientific reports. 30988354 2019 Apr 15;
An average-case sublinear forward algorithm for the haploid Li and Stephens model. Rosen, Yohei M; Paten, Benedict J Algorithms for molecular biology : AMB. 30988694 2019;
Deep Learning Benchmarks on L1000 Gene Expression Data. McDermott, Matthew; Wang, Jennifer; Zhao, Wen Ning; Sheridan, Steven D; Szolovits, Peter; Kohane, Isaac; Haggarty, Stephen J; Perlis, Roy H IEEE/ACM transactions on computational biology and bioinformatics. 30990190 2019 Apr 11;
Neuroimaging Evidence for Right Orbitofrontal Cortex Differences in Adolescents With Emotional and Behavioral Dysregulation. Spechler, Philip A; Chaarani, Bader; Orr, Catherine; Mackey, Scott; Higgins, Stephen T; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Althoff, Robert R; IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry. 31004740 2019 11;
Adding data provenance support to Apache Spark. Interlandi, Matteo; Ekmekji, Ari; Shah, Kshitij; Gulzar, Muhammad Ali; Tetali, Sai Deep; Kim, Miryung; Millstein, Todd; Condie, Tyson The VLDB journal : very large data bases : a publication of the VLDB Endowment. 31007500 2018 Oct;
Automated Debugging in Data-Intensive Scalable Computing. Gulzar, Muhammad Ali; Interlandi, Matteo; Han, Xueyuan; Li, Mingda; Condie, Tyson; Kim, Miryung Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). 31008457 2017 Sep;
Brain Imaging of the Cortex in ADHD: A Coordinated Analysis of Large-Scale Clinical and Population-Based Samples. Hoogman, Martine; Muetzel, Ryan; Guimaraes, Joao P; Shumskaya, Elena; Mennes, Maarten; Zwiers, Marcel P; Jahanshad, Neda; Sudre, Gustavo; Wolfers, Thomas; Earl, Eric A; Soliva Vila, Juan Carlos; Vives-Gilabert, Yolanda; Khadka, Sabin; Novotny, Stephanie E; Hartman, Catharina A; Heslenfeld, Dirk J; Schweren, Lizanne J S; Ambrosino, Sara; Oranje, Bob; de Zeeuw, Patrick; Chaim-Avancini, Tiffany M; Rosa, Pedro G P; Zanetti, Marcus V; Malpas, Charles B; Kohls, Gregor; von Polier, Georg G; Seitz, Jochen; Biederman, Joseph; Doyle, Alysa E; Dale, Anders M; van Erp, Theo G M; Epstein, Jeffery N; Jernigan, Terry L; Baur-Streubel, Ramona; Ziegler, Georg C; Zierhut, Kathrin C; Schrantee, Anouk; Høvik, Marie F; Lundervold, Astri J; Kelly, Clare; McCarthy, Hazel; Skokauskas, Norbert; O'Gorman Tuura, Ruth L; Calvo, Anna; Lera-Miguel, Sara; Nicolau, Rosa; Chantiluke, Kaylita C; Christakou, Anastasia; Vance, Alasdair; Cercignani, Mara; Gabel, Matt C; Asherson, Philip; Baumeister, Sarah; Brandeis, Daniel; Hohmann, Sarah; Bramati, Ivanei E; Tovar-Moll, Fernanda; Fallgatter, Andreas J; Kardatzki, Bernd; Schwarz, Lena; Anikin, Anatoly; Baranov, Alexandr; Gogberashvili, Tinatin; Kapilushniy, Dmitry; Solovieva, Anastasia; El Marroun, Hanan; White, Tonya; Karkashadze, Georgii; Namazova-Baranova, Leyla; Ethofer, Thomas; Mattos, Paulo; Banaschewski, Tobias; Coghill, David; Plessen, Kerstin J; Kuntsi, Jonna; Mehta, Mitul A; Paloyelis, Yannis; Harrison, Neil A; Bellgrove, Mark A; Silk, Tim J; Cubillo, Ana I; Rubia, Katya; Lazaro, Luisa; Brem, Silvia; Walitza, Susanne; Frodl, Thomas; Zentis, Mariam; Castellanos, Francisco X; Yoncheva, Yuliya N; Haavik, Jan; Reneman, Liesbeth; Conzelmann, Annette; Lesch, Klaus-Peter; Pauli, Paul; Reif, Andreas; Tamm, Leanne; Konrad, Kerstin; Oberwelland Weiss, Eileen; Busatto, Geraldo F; Louza, Mario R; Durston, Sarah; Hoekstra, Pieter J; Oosterlaan, Jaap; Stevens, Michael C; Ramos-Quiroga, J Antoni; Vilarroya, Oscar; Fair, Damien A; Nigg, Joel T; Thompson, Paul M; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Tiemeier, Henning; Bralten, Janita; Franke, Barbara The American journal of psychiatry. 31014101 2019 Jul 01;
Artificial intelligence in healthcare. Yu, Kun-Hsing; Beam, Andrew L; Kohane, Isaac S Nature biomedical engineering. 31015651 2018 10;
Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures. Cooper, Daniel J; Schürer, Stephan Molecules (Basel, Switzerland). 31018579 2019 Apr 23;
Machine learning for phenotyping opioid overdose events. Badger, Jonathan; LaRose, Eric; Mayer, John; Bashiri, Fereshteh; Page, David; Peissig, Peggy Journal of biomedical informatics. 31028874 2019 Jun;
Mapping abnormal subcortical neurodevelopment in a cohort of Thai children with HIV. Wade, Benjamin S C; Valcour, Victor G; Puthanakit, Thanyawee; Saremi, Arvin; Gutman, Boris A; Nir, Talia M; Watson, Christa; Aurpibul, Linda; Kosalaraksa, Pope; Ounchanum, Pradthana; Kerr, Stephen; Dumrongpisutikul, Netsiri; Visrutaratna, Pannee; Srinakarin, Jiraporn; Pothisri, Monthana; Narr, Katherine L; Thompson, Paul M; Ananworanich, Jintanat; Paul, Robert H; Jahanshad, Neda; PREDICT and Resilience Study Groups NeuroImage. Clinical. 31029050 2019 Apr 02;
Preference-Sensitive Management of Post-Mammography Decisions in Breast Cancer Diagnosis. Ayvaci, Mehmet Ulvi Saygi; Alagoz, Oguzhan; Ahsen, Mehmet Eren; Burnside, Elizabeth S Production and operations management. 31031555 2018 Dec;
A two-tiered curriculum to improve data management practices for researchers. Read, Kevin B; Larson, Catherine; Gillespie, Colleen; Oh, So Young; Surkis, Alisa PloS one. 31042776 2019;
Reappraisal of variants previously linked with sudden infant death syndrome: results from three population-based cohorts. Paludan-Müller, Christian; Ghouse, Jonas; Vad, Oliver B; Herfelt, Cecilie B; Lundegaard, Pia; Ahlberg, Gustav; Schmitt, Nicole; Svendsen, Jesper H; Haunsø, Stig; Bundgaard, Henning; Hansen, Torben; Kanters, Jørgen K; Olesen, Morten S European journal of human genetics : EJHG. 31043699 2019 Sep;
Integrating data and knowledge to identify functional modules of genes: a multilayer approach. Liang, Lifan; Chen, Vicky; Zhu, Kunju; Fan, Xiaonan; Lu, Xinghua; Lu, Songjian BMC bioinformatics. 31046665 2019 May 02;
Amygdalar reactivity is associated with prefrontal cortical thickness in a large population-based sample of adolescents. Albaugh, Matthew D; Hudziak, James J; Orr, Catherine; Spechler, Philip A; Chaarani, Bader; Mackey, Scott; Lepage, Claude; Fonov, Vladimir; Rioux, Pierre; Evans, Alan C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh; IMAGEN Consortium PloS one. 31048888 2019;
Imputation Strategy for Reliable Regional MRI Morphological Measurements. Sta Cruz, Shaina; Dinov, Ivo D; Herting, Megan M; González-Zacarías, Clio; Kim, Hosung; Toga, Arthur W; Sepehrband, Farshid Neuroinformatics. 31054076 2019 May 04;
Behind Distribution Shift: Mining Driving Forces of Changes and Causal Arrows. Huang, Biwei; Zhang, Kun; Zhang, Jiji; Sanchez-Romero, Ruben; Glymour, Clark; Schölkopf, Bernhard Proceedings. IEEE International Conference on Data Mining. 31068766 2017 Nov;
modEnrichr: a suite of gene set enrichment analysis tools for model organisms. Kuleshov, Maxim V; Diaz, Jennifer E L; Flamholz, Zachary N; Keenan, Alexandra B; Lachmann, Alexander; Wojciechowicz, Megan L; Cagan, Ross L; Ma'ayan, Avi Nucleic acids research. 31069376 2019 Jul 02;
Low Smoking Exposure, the Adolescent Brain, and the Modulating Role of CHRNA5 Polymorphisms. Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Spechler, Philip A; Potter, Alexandra; Orr, Catherine; D'Alberto, Nicholas; Hudson, Kelsey E; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Higgins, Stephen T; Schumann, Gunter; Althoff, Robert R; Stein, Elliot A; Garavan, Hugh; IMAGEN Consortium Biological psychiatry. Cognitive neuroscience and neuroimaging. 31072760 2019 Jul;
The Effect of Cardiac Preservation Solutions on Heart Transplant Survival. Carter, Kristen T; Lirette, Seth T; Baran, David A; Creswell, Lawrence L; Panos, Anthony L; Cochran, Richard P; Copeland, Jack G; Copeland, Hannah The Journal of surgical research. 31078900 2019 10;
Proteomics Standards Initiative Extended FASTA Format. Binz, Pierre-Alain; Shofstahl, Jim; Vizcaíno, Juan Antonio; Barsnes, Harald; Chalkley, Robert J; Menschaert, Gerben; Alpi, Emanuele; Clauser, Karl; Eng, Jimmy K; Lane, Lydie; Seymour, Sean L; Sánchez, Luis Francisco Hernández; Mayer, Gerhard; Eisenacher, Martin; Perez-Riverol, Yasset; Kapp, Eugene A; Mendoza, Luis; Baker, Peter R; Collins, Andrew; Van Den Bossche, Tim; Deutsch, Eric W Journal of proteome research. 31081335 2019 Jun 07;
Interactive impact of childhood maltreatment, depression, and age on cortical brain structure: mega-analytic findings from a large multi-site cohort. Tozzi, Leonardo; Garczarek, Lisa; Janowitz, Deborah; Stein, Dan J; Wittfeld, Katharina; Dobrowolny, Henrik; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Bülow, Robin; Völzke, Henry; Klinger-König, Johanna; Schnell, Knut; Schoepf, Dieter; Grotegerd, Dominik; Opel, Nils; Dannlowski, Udo; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Kircher, Tilo; Jüksel, Dilara; Nenadić, Igor; Krug, Axel; Hahn, Tim; Steinsträter, Olaf; Redlich, Ronny; Zaremba, Dario; Zurowski, Bartosz; Fu, Cynthia H Y; Dima, Danai; Cole, James; Grabe, Hans J; Connolly, Colm G; Yang, Tony T; Ho, Tiffany C; LeWinn, Kaja Z; Li, Meng; Groenewold, Nynke A; Salminen, Lauren E; Walter, Martin; Simmons, Alan N; van Erp, Theo G M; Jahanshad, Neda; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Hibar, Derrek P; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Frodl, Thomas; ‘for the ENIGMA-MDD Consortium’ Psychological medicine 31084657 2020 04
Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data. Liu, Ke; Newbury, Patrick A; Glicksberg, Benjamin S; Zeng, William Z D; Paithankar, Shreya; Andrechek, Eran R; Chen, Bin Nature communications. 31092827 2019 05 15;
Exercise ameliorates deficits in neural microstructure in a Disc1 model of psychiatric illness. Barnett, Brian R; Anderson, Jacqueline M; Torres-Velázquez, Maribel; Yi, Sue Y; Rowley, Paul A; Yu, John-Paul J Magnetic resonance imaging. 31103832 2019 Sep;
Automated Phrase Mining from Massive Text Corpora. Shang, Jingbo; Liu, Jialu; Jiang, Meng; Ren, Xiang; Voss, Clare R; Han, Jiawei IEEE transactions on knowledge and data engineering. 31105412 2018 Oct;
Identifying the molecular and cellular signature of cardiac dilation following myocardial infarction. Lindsey, Merry L; Ma, Yonggang; Flynn, Elizabeth R; Winniford, Michael D; Hall, Michael E; DeLeon-Pennell, Kristine Y Biochimica et biophysica acta. Molecular basis of disease. 31109452 2019 Jul 01;
ChEA3: transcription factor enrichment analysis by orthogonal omics integration. Keenan, Alexandra B; Torre, Denis; Lachmann, Alexander; Leong, Ariel K; Wojciechowicz, Megan L; Utti, Vivian; Jagodnik, Kathleen M; Kropiwnicki, Eryk; Wang, Zichen; Ma'ayan, Avi Nucleic acids research. 31114921 2019 Jul 02;
Neural Correlates of Failed Inhibitory Control as an Early Marker of Disordered Eating in Adolescents. Bartholdy, Savani; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike; IMAGEN Consortium Biological psychiatry. 31122340 2019 06 01;
The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services. Avesani, Paolo; McPherson, Brent; Hayashi, Soichi; Caiafa, Cesar F; Henschel, Robert; Garyfallidis, Eleftherios; Kitchell, Lindsey; Bullock, Daniel; Patterson, Andrew; Olivetti, Emanuele; Sporns, Olaf; Saykin, Andrew J; Wang, Lei; Dinov, Ivo; Hancock, David; Caron, Bradley; Qian, Yiming; Pestilli, Franco Scientific data. 31123325 2019 May 23;
Design, construction, and validation of optogenetic proteins. O'Banion, Colin P; Goswami, Anwesha; Lawrence, David S Methods in enzymology. 31128778 2019;
Training Classifiers with Natural Language Explanations. Hancock, Braden; Bringmann, Martin; Varma, Paroma; Liang, Percy; Wang, Stephanie; Ré, Christopher Proceedings of the conference. Association for Computational Linguistics. Meeting. 31130772 2018 Jul;
Learning Compressed Transforms with Low Displacement Rank. Thomas, Anna T; Gu, Albert; Dao, Tri; Rudra, Atri; Ré, Christopher Advances in neural information processing systems. 31130799 2018 Dec;
A two-pronged progress in structured dense matrixvector multiplication. De Sa, Christopher; Gu, Albert; Puttagunta, Rohan; Ré, Christopher; Rudra, Atri Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. 31130802 2018 Jan;
Representation Tradeoffs for Hyperbolic Embeddings. De Sa, Christopher; Gu, Albert; Ré, Christopher; Sala, Frederic Proceedings of machine learning research. 31131375 2018;
Exploring the Utility of Developer Exhaust. Zhang, Jian; Lam, Max; Wang, Stephanie; Varma, Paroma; Nardi, Luigi; Olukotun, Kunle; Ré, Christopher Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). 31131381 2018 Jun;
10Kin1day: A Bottom-Up Neuroimaging Initiative. van den Heuvel, Martijn P; Scholtens, Lianne H; van der Burgh, Hannelore K; Agosta, Federica; Alloza, Clara; Arango, Celso; Auyeung, Bonnie; Baron-Cohen, Simon; Basaia, Silvia; Benders, Manon J N L; Beyer, Frauke; Booij, Linda; Braun, Kees P J; Filho, Geraldo Busatto; Cahn, Wiepke; Cannon, Dara M; Chaim-Avancini, Tiffany M; Chan, Sandra S M; Chen, Eric Y H; Crespo-Facorro, Benedicto; Crone, Eveline A; Dannlowski, Udo; de Zwarte, Sonja M C; Dietsche, Bruno; Donohoe, Gary; Plessis, Stefan Du; Durston, Sarah; Díaz-Caneja, Covadonga M; Díaz-Zuluaga, Ana M; Emsley, Robin; Filippi, Massimo; Frodl, Thomas; Gorges, Martin; Graff, Beata; Grotegerd, Dominik; G?secki, Dariusz; Hall, Julie M; Holleran, Laurena; Holt, Rosemary; Hopman, Helene J; Jansen, Andreas; Janssen, Joost; Jodzio, Krzysztof; Jäncke, Lutz; Kaleda, Vasiliy G; Kassubek, Jan; Masouleh, Shahrzad Kharabian; Kircher, Tilo; Koevoets, Martijn G J C; Kostic, Vladimir S; Krug, Axel; Lawrie, Stephen M; Lebedeva, Irina S; Lee, Edwin H M; Lett, Tristram A; Lewis, Simon J G; Liem, Franziskus; Lombardo, Michael V; Lopez-Jaramillo, Carlos; Margulies, Daniel S; Markett, Sebastian; Marques, Paulo; Martínez-Zalacaín, Ignacio; McDonald, Colm; McIntosh, Andrew M; McPhilemy, Genevieve; Meinert, Susanne L; Menchón, José M; Montag, Christian; Moreira, Pedro S; Morgado, Pedro; Mothersill, David O; Mérillat, Susan; Müller, Hans-Peter; Nabulsi, Leila; Najt, Pablo; Narkiewicz, Krzysztof; Naumczyk, Patrycja; Oranje, Bob; Ortiz-Garcia de la Foz, Victor; Peper, Jiska S; Pineda, Julian A; Rasser, Paul E; Redlich, Ronny; Repple, Jonathan; Reuter, Martin; Rosa, Pedro G P; Ruigrok, Amber N V; Sabisz, Agnieszka; Schall, Ulrich; Seedat, Soraya; Serpa, Mauricio H; Skouras, Stavros; Soriano-Mas, Carles; Sousa, Nuno; Szurowska, Edyta; Tomyshev, Alexander S; Tordesillas-Gutierrez, Diana; Valk, Sofie L; van den Berg, Leonard H; van Erp, Theo G M; van Haren, Neeltje E M; van Leeuwen, Judith M C; Villringer, Arno; Vinkers, Christiaan H; Vollmar, Christian; Waller, Lea; Walter, Henrik; Whalley, Heather C; Witkowska, Marta; Witte, A Veronica; Zanetti, Marcus V; Zhang, Rui; de Lange, Siemon C Frontiers in neurology. 31133958 2019;
Multi-Site Meta-Analysis of Morphometry. Jahanshad, Neda; Faskowitz, Joshua; Roshchupkin, Gennady; Hibar, Derrek P; Gutman, Boris A; Tustison, Nicholas J; Adams, Hieab H H; Niessen, Wiro J; Vernooij, Meike W; Ikram, M Arfan; Zwiers, Marcel P; Vasquez, Alejandro Arias; Franke, Barbara; Kroll, Jennifer L; Mwangi, Benson; Soares, Jair C; Ing, Alex; Desrivieres, Sylvane; Schumann, Gunter; Hansell, Narelle K; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M IEEE/ACM transactions on computational biology and bioinformatics. 31135366 2019 Sep-Oct;
Optogenetic perturbation of the biochemical pathways that control cell behavior. Haar, Lauren L; Lawrence, David S; Hughes, Robert M Methods in enzymology. 31155059 2019;
Haplotype-aware diplotyping from noisy long reads. Ebler, Jana; Haukness, Marina; Pesout, Trevor; Marschall, Tobias; Paten, Benedict Genome biology. 31159868 2019 06 03;
De novo protein design by citizen scientists. Koepnick, Brian; Flatten, Jeff; Husain, Tamir; Ford, Alex; Silva, Daniel-Adriano; Bick, Matthew J; Bauer, Aaron; Liu, Gaohua; Ishida, Yojiro; Boykov, Alexander; Estep, Roger D; Kleinfelter, Susan; Nørgård-Solano, Toke; Wei, Linda; Players, Foldit; Montelione, Gaetano T; DiMaio, Frank; Popovi?, Zoran; Khatib, Firas; Cooper, Seth; Baker, David Nature. 31168091 2019 Jun;
Rapid energy expenditure estimation for ankle assisted and inclined loaded walking. Slade, Patrick; Troutman, Rachel; Kochenderfer, Mykel J; Collins, Steven H; Delp, Scott L Journal of neuroengineering and rehabilitation. 31171003 2019 Jun 06;
Quantifying performance of machine learning methods for neuroimaging data. Jollans, Lee; Boyle, Rory; Artiges, Eric; Banaschewski, Tobias; Desrivières, Sylvane; Grigis, Antoine; Martinot, Jean-Luc; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Whelan, Robert NeuroImage. 31173905 2019 Oct 01;
Age-based versus Risk-based Mammography Screening in Women 40-49 Years Old: A Cross-sectional Study. Burnside, Elizabeth S; Trentham-Dietz, Amy; Shafer, Christina M; Hampton, John M; Alagoz, Oguz; Cox, Jennifer R; Mischo, Eric; Schrager, Sarina B; Wilke, Lee G Radiology. 31184557 2019 Aug;
Accelerated Stochastic Power Iteration. De Sa, Christopher; He, Bryan; Mitliagkas, Ioannis; Ré, Christopher; Xu, Peng Proceedings of machine learning research. 31187095 2018;
Inferring causation from time series in Earth system sciences. Runge, Jakob; Bathiany, Sebastian; Bollt, Erik; Camps-Valls, Gustau; Coumou, Dim; Deyle, Ethan; Glymour, Clark; Kretschmer, Marlene; Mahecha, Miguel D; Muñoz-Marí, Jordi; van Nes, Egbert H; Peters, Jonas; Quax, Rick; Reichstein, Markus; Scheffer, Marten; Schölkopf, Bernhard; Spirtes, Peter; Sugihara, George; Sun, Jie; Zhang, Kun; Zscheischler, Jakob Nature communications. 31201306 2019 Jun 14;
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Martínez-Romero, Marcos; O'Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Hardi, Josef; Graybeal, John; Musen, Mark A Database : the journal of biological databases and curation. 31210270 2019 01 01;
Review of Causal Discovery Methods Based on Graphical Models. Glymour, Clark; Zhang, Kun; Spirtes, Peter Frontiers in genetics. 31214249 2019;
Machine learning techniques for personalized breast cancer risk prediction: comparison with the BCRAT and BOADICEA models. Ming, Chang; Viassolo, Valeria; Probst-Hensch, Nicole; Chappuis, Pierre O; Dinov, Ivo D; Katapodi, Maria C Breast cancer research : BCR. 31221197 2019 06 20;
Augmenting subnetwork inference with information extracted from the scientific literature. Kiblawi, Sid; Chasman, Deborah; Henning, Amanda; Park, Eunju; Poon, Hoifung; Gould, Michael; Ahlquist, Paul; Craven, Mark PLoS computational biology. 31246951 2019 Jun;
Pathway-level information extractor (PLIER) for gene expression data. Mao, Weiguang; Zaslavsky, Elena; Hartmann, Boris M; Sealfon, Stuart C; Chikina, Maria Nature methods. 31249421 2019 07;
Cheminformatics-driven discovery of polymeric micelle formulations for poorly soluble drugs. Alves, Vinicius M; Hwang, Duhyeong; Muratov, Eugene; Sokolsky-Papkov, Marina; Varlamova, Ekaterina; Vinod, Natasha; Lim, Chaemin; Andrade, Carolina H; Tropsha, Alexander; Kabanov, Alexander Science advances. 31249867 2019 06;
A model for initiating research data management services at academic libraries. Read, Kevin B; Koos, Jessica; Miller, Rebekah S; Miller, Cathryn F; Phillips, Gesina A; Scheinfeld, Laurel; Surkis, Alisa Journal of the Medical Library Association : JMLA. 31258450 2019 Jul;
Privacy-Preserving Collaborative Prediction using Random Forests. Giacomelli, Irene; Jha, Somesh; Kleiman, Ross; Page, David; Yoon, Kyonghwan AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 31258977 2019;
Machine Learning Assisted Discovery of Novel Predictive Lab Tests Using Electronic Health Record Data. Kleiman, Ross; Kuusisto, Finn; Ross, Ian; Peissig, Peggy L; Stewart, Ron; Page, C David; Weiss, Jeremy AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 31259012 2019;
Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results. Martínez-Bartolomé, Salvador; Bamberger, Tom Casimir; Lavallée-Adam, Mathieu; McClatchy, Daniel B; Yates 3rd, John R Journal of proteome research. 31260318 2019 08 02;
Predicting development of adolescent drinking behaviour from whole brain structure at 14 years of age. Kühn, Simone; Mascharek, Anna; Banaschewski, Tobias; Bodke, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivieres, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomas; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Lindenberger, Ulman; Gallinat, Jürgen; IMAGEN Consortium eLife. 31262402 2019 Jul 02;
Altered Cortical Brain Structure and Increased Risk for Disease Seen Decades After Perinatal Exposure to Maternal Smoking: A Study of 9000 Adults in the UK Biobank. Salminen, Lauren E; Wilcox, Rand R; Zhu, Alyssa H; Riedel, Brandalyn C; Ching, Christopher R K; Rashid, Faisal; Thomopoulos, Sophia I; Saremi, Arvin; Harrison, Marc B; Ragothaman, Anjanibhargavi; Knight, Victoria; Boyle, Christina P; Medland, Sarah E; Thompson, Paul M; Jahanshad, Neda Cerebral cortex (New York, N.Y. : 1991). 31271414 2019 Jul 04;
The joint effect of aging and HIV infection on microstructure of white matter bundles. Kuhn, Taylor; Jin, Yan; Huang, Chao; Kim, Yeun; Nir, Talia M; Gullett, Joseph M; Jones, Jacob D; Sayegh, Phillip; Chung, Caroline; Dang, Bianca H; Singer, Elyse J; Shattuck, David W; Jahanshad, Neda; Bookheimer, Susan Y; Hinkin, Charles H; Zhu, Hongtu; Thompson, Paul M; Thames, April D Human brain mapping. 31271489 2019 10 15;
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. He, Yongqun; Duncan, William D; Cooper, Daniel J; Hansen, Jens; Iyengar, Ravi; Ong, Edison; Walker, Kendal; Tibi, Omar; Smith, Sam; Serra, Lucas M; Zheng, Jie; Sarntivijai, Sirarat; Schürer, Stephan; O'Shea, K Sue; Diehl, Alexander D BMC bioinformatics. 31272389 2019 Apr 25;
Reporting and connecting cell type names and gating definitions through ontologies. Overton, James A; Vita, Randi; Dunn, Patrick; Burel, Julie G; Bukhari, Syed Ahmad Chan; Cheung, Kei-Hoi; Kleinstein, Steven H; Diehl, Alexander D; Peters, Bjoern BMC bioinformatics 31272390 2019 Apr 25
Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients. Bhattacharyya, Sudeepa; Ahmed, Ahmed T; Arnold, Matthias; Liu, Duan; Luo, Chunqiao; Zhu, Hongjie; Mahmoudiandehkordi, Siamak; Neavin, Drew; Louie, Gregory; Dunlop, Boadie W; Frye, Mark A; Wang, Liewei; Weinshilboum, Richard M; Krishnan, Ranga R; Rush, A John; Kaddurah-Daouk, Rima Translational psychiatry. 31273200 2019 Jul 04;
Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. Cai, Chunhui; Cooper, Gregory F; Lu, Kevin N; Ma, Xiaojun; Xu, Shuping; Zhao, Zhenlong; Chen, Xueer; Xue, Yifan; Lee, Adrian V; Clark, Nathan; Chen, Vicky; Lu, Songjian; Chen, Lujia; Yu, Liyue; Hochheiser, Harry S; Jiang, Xia; Wang, Q Jane; Lu, Xinghua PLoS computational biology. 31276486 2019 07;
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. Shteynberg, David D; Deutsch, Eric W; Campbell, David S; Hoopmann, Michael R; Kusebauch, Ulrike; Lee, Dave; Mendoza, Luis; Midha, Mukul Kumar; Sun, Zhi; Whetton, Anthony D; Moritz, Robert L Journal of proteome research. 31290668 2019 Jul 10;
Single Nucleotide Polymorphisms at a Distance from Aryl Hydrocarbon Receptor (AHR) Binding Sites Influence AHR Ligand-Dependent Gene Expression. Neavin, Drew R; Lee, Jeong-Heon; Liu, Duan; Ye, Zhenqing; Li, Hu; Wang, Liewei; Ordog, Tamas; Weinshilboum, Richard M Drug metabolism and disposition: the biological fate of chemicals. 31292129 2019 09;
Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants. Cline, Melissa S; Babbi, Giulia; Bonache, Sandra; Cao, Yue; Casadio, Rita; de la Cruz, Xavier; Díez, Orland; Gutiérrez-Enríquez, Sara; Katsonis, Panagiotis; Lai, Carmen; Lichtarge, Olivier; Martelli, Pier L; Mishne, Gilad; Moles-Fernández, Alejandro; Montalban, Gemma; Mooney, Sean D; O'Conner, Robert; Ootes, Lars; Özkan, Selen; Padilla, Natalia; Pagel, Kymberleigh A; Pejaver, Vikas; Radivojac, Predrag; Riera, Casandra; Savojardo, Castrense; Shen, Yang; Sun, Yuanfei; Topper, Scott; Parsons, Michael T; Spurdle, Amanda B; Goldgar, David E; ENIGMA Consortium Human mutation. 31294896 2019 Sep;
Best practices for analyzing large-scale health data from wearables and smartphone apps. Hicks, Jennifer L; Althoff, Tim; Sosic, Rok; Kuhar, Peter; Bostjancic, Bojan; King, Abby C; Leskovec, Jure; Delp, Scott L NPJ digital medicine. 31304391 2019;
Weakly supervised classification of aortic valve malformations using unlabeled cardiac MRI sequences. Fries, Jason A; Varma, Paroma; Chen, Vincent S; Xiao, Ke; Tejeda, Heliodoro; Saha, Priyanka; Dunnmon, Jared; Chubb, Henry; Maskatia, Shiraz; Fiterau, Madalina; Delp, Scott; Ashley, Euan; Ré, Christopher; Priest, James R Nature communications. 31308376 2019 Jul 15;
Irritability and brain volume in adolescents: cross-sectional and longitudinal associations. Dennis, Emily L; Humphreys, Kathryn L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H Social cognitive and affective neuroscience. 31309969 2019 07 31;
Functional network connectivity impairments and core cognitive deficits in schizophrenia. Adhikari, Bhim M; Hong, L Elliot; Sampath, Hemalatha; Chiappelli, Joshua; Jahanshad, Neda; Thompson, Paul M; Rowland, Laura M; Calhoun, Vince D; Du, Xiaoming; Chen, Shuo; Kochunov, Peter Human brain mapping. 31313441 2019 11 01;
Fast Causal Inference with Non-Random Missingness by Test-Wise Deletion. Strobl, Eric V; Visweswaran, Shyam; Spirtes, Peter L International journal of data science and analytics. 31321289 2018 Aug;
Cannabis-Associated Psychotic-like Experiences Are Mediated by Developmental Changes in the Parahippocampal Gyrus. Yu, Tao; Jia, Tianye; Zhu, Liping; Desrivières, Sylvane; Macare, Christine; Bi, Yan; Bokde, Arun L W; Quinlan, Erin Burke; Heinz, Andreas; Ittermann, Bernd; Liu, ChuanXin; Ji, Lei; Banaschewski, Tobias; Ren, Decheng; Du, Li; Hou, Binyin; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Luo, Qiang; Chu, Congying; Paus, Tomas; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Smolka, Michael N; Vetter, Nora C; Mennigen, Eva; Lei, Cai; Walter, Henrik; Fröhner, Juliane H; Whelan, Robert; He, Guang; He, Lin; Schumann, Gunter; Robert, Gabriel; IMAGEN Consortium Journal of the American Academy of Child and Adolescent Psychiatry 31326579 2020 05
Heavy drinking in adolescents is associated with change in brainstem microstructure and reward sensitivity. Galinowski, André; Miranda, Ruben; Lemaitre, Hervé; Artiges, Eric; Paillère Martinot, Marie-Laure; Filippi, Irina; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Stringaris, Argyris; Becker, Andreas; Isensee, Corinna; Struve, Maren; Fadai, Tahmine; Kappel, Viola; Goodman, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gallinat, Juergen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hohmann, Sarah; Jurk, Sarah; Millenet, Sabina; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Poustka, Luise; Quinlan, Erin Burke; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; IMAGEN Consortium Addiction biology. 31328396 2020 May;
iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. Rojo, Constanza; Zhang, Qi; Kele?, Sündüz Genetic epidemiology. 31328826 2019 10;
We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts? Wheeler, Nicole Thorax. 31331948 2019 Sep;
White Matter in Schizophrenia Treatment Resistance. Kochunov, Peter; Huang, Junchao; Chen, Song; Li, Yanli; Tan, Shuping; Fan, Fengmei; Feng, Wei; Wang, Yunhui; Rowland, Laura M; Savransky, Anya; Du, Xiaoming; Chiappelli, Joshua; Chen, Shuo; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Adhikari, Bhim; Sampath, Hemalatha; Cui, Yimin; Wang, Zhiren; Yang, Fude; Tan, Yunlong; Hong, L Elliot The American journal of psychiatry. 31352812 2019 10 01;
No Alterations of Brain Structural Asymmetry in Major Depressive Disorder: An ENIGMA Consortium Analysis. de Kovel, Carolien G F; Aftanas, Lyubomir; Aleman, André; Alexander-Bloch, Aaron F; Baune, Bernhard T; Brack, Ivan; Bülow, Robin; Busatto Filho, Geraldo; Carballedo, Angela; Connolly, Colm G; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Dohm, Katharina; Erwin-Grabner, Tracy; Frodl, Thomas; Fu, Cynthia H Y; Hall, Geoffrey B; Glahn, David C; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans Jörgen; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Harris, Mathew A; Harrison, Ben J; Hatton, Sean N; Hickie, Ian B; Ho, Tiffany C; Jahanshad, Neda; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leehr, Elisabeth J; Li, Meng; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew M; McLellan, Quinn; Medland, Sarah E; Mueller, Bryon A; Nenadic, Igor; Osipov, Evgeny; Papmeyer, Martina; Portella, Maria J; Reneman, Liesbeth; Rosa, Pedro G P; Sacchet, Matthew D; Schnell, Knut; Schrantee, Anouk; Sim, Kang; Simulionyte, Egle; Sindermann, Lisa; Singh, Aditya; Stein, Dan J; Ubani, Benjamin N; Van der Wee, Nic J A; Van der Werff, Steven J A; Veer, Ilya M; Vives-Gilabert, Yolanda; Völzke, Henry; Walter, Henrik; Walter, Martin; Schreiner, Melinda Westlund; Whalley, Heather; Winter, Nils; Wittfeld, Katharina; Yang, Tony T; Yüksel, Dilara; Zaremba, Dario; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Francks, Clyde The American journal of psychiatry. 31352813 2019 12 01;
Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases. O'Banion, Colin P; Vickerman, Brianna M; Haar, Lauren; Lawrence, David S Cell chemical biology. 31353320 2019 Oct 17;
Temporal Poisson Square Root Graphical Models. Geng, Sinong; Kuang, Zhaobin; Peissig, Peggy; Page, David Proceedings of machine learning research. 31355361 2018 Jul;
ROBOT: A Tool for Automating Ontology Workflows. Jackson, Rebecca C; Balhoff, James P; Douglass, Eric; Harris, Nomi L; Mungall, Christopher J; Overton, James A BMC bioinformatics. 31357927 2019 Jul 29;
Altered white matter microstructure in 22q11.2 deletion syndrome: a multisite diffusion tensor imaging study. Villalón-Reina, Julio E; Martínez, Kenia; Qu, Xiaoping; Ching, Christopher R K; Nir, Talia M; Kothapalli, Deydeep; Corbin, Conor; Sun, Daqiang; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Emanuel, Beverly; McDonald-McGinn, Donna M; Vorstman, Jacob A S; Fiksinski, Ania M; Koops, Sanne; Ruparel, Kosha; Roalf, David; Gur, Raquel E; Eric Schmitt, J; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Doherty, Joanne L; Cunningham, Adam C; van den Bree, Marianne; Linden, David E J; Owen, Michael; Moss, Hayley; Kelly, Sinead; Donohoe, Gary; Murphy, Kieran C; Arango, Celso; Jahanshad, Neda; Thompson, Paul M; Bearden, Carrie E Molecular psychiatry. 31358905 2019 Jul 29;
New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders. Evangelou, Evangelos; Gao, He; Chu, Congying; Ntritsos, Georgios; Blakeley, Paul; Butts, Andrew R; Pazoki, Raha; Suzuki, Hideaki; Koskeridis, Fotios; Yiorkas, Andrianos M; Karaman, Ibrahim; Elliott, Joshua; Luo, Qiang; Aeschbacher, Stefanie; Bartz, Traci M; Baumeister, Sebastian E; Braund, Peter S; Brown, Michael R; Brody, Jennifer A; Clarke, Toni-Kim; Dimou, Niki; Faul, Jessica D; Homuth, Georg; Jackson, Anne U; Kentistou, Katherine A; Joshi, Peter K; Lemaitre, Rozenn N; Lind, Penelope A; Lyytikäinen, Leo-Pekka; Mangino, Massimo; Milaneschi, Yuri; Nelson, Christopher P; Nolte, Ilja M; Perälä, Mia-Maria; Polasek, Ozren; Porteous, David; Ratliff, Scott M; Smith, Jennifer A; Stan?áková, Alena; Teumer, Alexander; Tuominen, Samuli; Thériault, Sébastien; Vangipurapu, Jagadish; Whitfield, John B; Wood, Alexis; Yao, Jie; Yu, Bing; Zhao, Wei; Arking, Dan E; Auvinen, Juha; Liu, Chunyu; Männikkö, Minna; Risch, Lorenz; Rotter, Jerome I; Snieder, Harold; Veijola, Juha; Blakemore, Alexandra I; Boehnke, Michael; Campbell, Harry; Conen, David; Eriksson, Johan G; Grabe, Hans J; Guo, Xiuqing; van der Harst, Pim; Hartman, Catharina A; Hayward, Caroline; Heath, Andrew C; Jarvelin, Marjo-Riitta; Kähönen, Mika; Kardia, Sharon L R; Kühne, Michael; Kuusisto, Johanna; Laakso, Markku; Lahti, Jari; Lehtimäki, Terho; McIntosh, Andrew M; Mohlke, Karen L; Morrison, Alanna C; Martin, Nicholas G; Oldehinkel, Albertine J; Penninx, Brenda W J H; Psaty, Bruce M; Raitakari, Olli T; Rudan, Igor; Samani, Nilesh J; Scott, Laura J; Spector, Tim D; Verweij, Niek; Weir, David R; Wilson, James F; Levy, Daniel; Tzoulaki, Ioanna; Bell, Jimmy D; Matthews, Paul M; Rothenfluh, Adrian; Desrivières, Sylvane; Schumann, Gunter; Elliott, Paul Nature human behaviour. 31358974 2019 09;
Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements. Tsueng, Ginger; Kumar, Arun; Nanis, Steven M; Su, Andrew I Human computation (Fairfax, Va.). 31363486 2019;
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. Sánchez, Luis Francisco Hernández; Burger, Bram; Horro, Carlos; Fabregat, Antonio; Johansson, Stefan; Njølstad, Pål Rasmus; Barsnes, Harald; Hermjakob, Henning; Vaudel, Marc GigaScience. 31363752 2019 08 01;
Sequence tube maps: making graph genomes intuitive to commuters. Beyer, Wolfgang; Novak, Adam M; Hickey, Glenn; Chan, Jeffrey; Tan, Vanessa; Paten, Benedict; Zerbino, Daniel R Bioinformatics (Oxford, England). 31368484 2019 Dec 15;
Predicting kinase inhibitors using bioactivity matrix derived informer sets. Zhang, Huikun; Ericksen, Spencer S; Lee, Ching-Pei; Ananiev, Gene E; Wlodarchak, Nathan; Yu, Peng; Mitchell, Julie C; Gitter, Anthony; Wright, Stephen J; Hoffmann, F Michael; Wildman, Scott A; Newton, Michael A PLoS computational biology. 31381559 2019 08;
Quantifying the impact of public omics data. Perez-Riverol, Yasset; Zorin, Andrey; Dass, Gaurhari; Vu, Manh-Tu; Xu, Pan; Glont, Mihai; Vizcaíno, Juan Antonio; Jarnuczak, Andrew F; Petryszak, Robert; Ping, Peipei; Hermjakob, Henning Nature communications. 31383865 2019 Aug 05;
Architecture and usability of OntoKeeper, an ontology evaluation tool. Amith, Muhammad; Manion, Frank; Liang, Chen; Harris, Marcelline; Wang, Dennis; He, Yongqun; Tao, Cui BMC medical informatics and decision making. 31391056 2019 08 08;
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types. Yu, K; Chen, B; Aran, D; Charalel, J; Yau, C; Wolf, D M; van 't Veer, L J; Butte, A J; Goldstein, T; Sirota, M Nature communications. 31395879 2019 Aug 08;
Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis. Zheng, Zihao; Mergaert, Aisha M; Fahmy, Lauren M; Bawadekar, Mandar; Holmes, Caitlyn L; Ong, Irene M; Bridges, Alan J; Newton, Michael A; Shelef, Miriam A Arthritis & rheumatology (Hoboken, N.J.). 31397047 2019 Aug 08;
APOE?4 Gene Dose and Sex Effects on Alzheimer's Disease MRI Biomarkers in Older Adults with Mild Cognitive Impairment. Hobel, Zachary; Isenberg, A Lisette; Raghupathy, Dhvani; Mack, Wendy; Pa, Judy; Alzheimer?s Disease Neuroimaging Initiative and the Australian Imaging Biomarkers and Lifestyle flagship study of ageing Journal of Alzheimer's disease : JAD. 31424388 2019;
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen; Snyder, Michael P; Baker, Mark S; Deutsch, Eric W Journal of proteome research. 31430157 2019 Dec 06;
Context-Aware Delivery of Ecological Momentary Assessment. Aminikhanghahi, Samaneh; Schmitter-Edgecombe, Maureen; Cook, Diane J IEEE journal of biomedical and health informatics 31443058 2020 04
The Association Between Familial Risk and Brain Abnormalities Is Disease Specific: An ENIGMA-Relatives Study of Schizophrenia and Bipolar Disorder. de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Aleman, André; Alpert, Kathryn I; Bearden, Carrie E; Bertolino, Alessandro; Bois, Catherine; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Frankland, Andrew; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; de Haan, Lieuwe; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hillegers, Manon H J; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krabbendam, Lydia; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Marsman, Jan-Bernard C; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Najt, Pablo; Neilson, Emma; Newport, Jason; van Os, Jim; Overs, Bronwyn; Ozerdem, Aysegul; Picchioni, Marco M; Richter, Anja; Roberts, Gloria; Aydogan, Aybala Saricicek; Schofield, Peter R; Simsek, Fatma; Soares, Jair C; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Walter, Henrik; Wang, Lei; Weinberger, Daniel R; Whalley, Heather C; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; van Erp, Theo G M; Turner, Jessica A; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E M Biological psychiatry. 31443932 2019 10 01;
Inverse probability weighted Cox model in multi-site studies without sharing individual-level data. Shu, Di; Yoshida, Kazuki; Fireman, Bruce H; Toh, Sengwee Statistical methods in medical research. 31448681 2019 Aug 26;
Learning High-dimensional Directed Acyclic Graphs with Mixed Data-types. Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F Proceedings of machine learning research. 31453569 2019 Aug;
Genomic GPS: using genetic distance from individuals to public data for genomic analysis without disclosing personal genomes. Kim, Kunhee; Baik, Hyungryul; Jang, Chloe Soohyun; Roh, Jin Kyung; Eskin, Eleazer; Han, Buhm Genome biology 31455387 2019 08 27
Practical Considerations for Data Collection and Management in Mobile Health Micro-randomized Trials. Seewald, Nicholas J; Smith, Shawna N; Lee, Andy Jinseok; Klasnja, Predrag; Murphy, Susan A Statistics in biosciences. 31462937 2019 Jul;
Functional Brain Hyperactivations Are Linked to an Electrophysiological Measure of Slow Interhemispheric Transfer Time after Pediatric Moderate/Severe Traumatic Brain Injury. Olsen, Alexander; Babikian, Talin; Dennis, Emily L; Ellis-Blied, Monica U; Giza, Christopher; Marion, Sarah DeBoard; Mink, Richard; Johnson, Jeffrey; Babbitt, Christopher J; Thompson, Paul M; Asarnow, Robert F Journal of neurotrauma. 31469049 2020 Jan 15;
White matter disturbances in major depressive disorder: a coordinated analysis across 20 international cohorts in the ENIGMA MDD working group. van Velzen, Laura S; Kelly, Sinead; Isaev, Dmitry; Aleman, Andre; Aftanas, Lyubomir I; Bauer, Jochen; Baune, Bernhard T; Brak, Ivan V; Carballedo, Angela; Connolly, Colm G; Couvy-Duchesne, Baptiste; Cullen, Kathryn R; Danilenko, Konstantin V; Dannlowski, Udo; Enneking, Verena; Filimonova, Elena; Förster, Katharina; Frodl, Thomas; Gotlib, Ian H; Groenewold, Nynke A; Grotegerd, Dominik; Harris, Mathew A; Hatton, Sean N; Hawkins, Emma L; Hickie, Ian B; Ho, Tiffany C; Jansen, Andreas; Kircher, Tilo; Klimes-Dougan, Bonnie; Kochunov, Peter; Krug, Axel; Lagopoulos, Jim; Lee, Renick; Lett, Tristram A; Li, Meng; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; McLellan, Quinn; Meinert, Susanne; Nenadi?, Igor; Osipov, Evgeny; Penninx, Brenda W J H; Portella, Maria J; Repple, Jonathan; Roos, Annerine; Sacchet, Matthew D; Sämann, Philipp G; Schnell, Knut; Shen, Xueyi; Sim, Kang; Stein, Dan J; van Tol, Marie-Jose; Tomyshev, Alexander S; Tozzi, Leonardo; Veer, Ilya M; Vermeiren, Robert; Vives-Gilabert, Yolanda; Walter, Henrik; Walter, Martin; van der Wee, Nic J A; van der Werff, Steven J A; Schreiner, Melinda Westlund; Whalley, Heather C; Wright, Margaret J; Yang, Tony T; Zhu, Alyssa; Veltman, Dick J; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne Molecular psychiatry. 31471575 2019 Aug 30;
A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS. McMahon, Mary; Contreras, Adrian; Holm, Mikael; Uechi, Tamayo; Forester, Craig M; Pang, Xiaming; Jackson, Cody; Calvert, Meredith E; Chen, Bin; Quigley, David A; Luk, John M; Kelley, R Kate; Gordan, John D; Gill, Ryan M; Blanchard, Scott C; Ruggero, Davide eLife. 31478838 2019 09 03;
Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data. Hicks, Allison L; Wheeler, Nicole; Sánchez-Busó, Leonor; Rakeman, Jennifer L; Harris, Simon R; Grad, Yonatan H PLoS computational biology. 31479500 2019 09;
Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics. Köhler, Sebastian; Øien, N Christine; Buske, Orion J; Groza, Tudor; Jacobsen, Julius O B; McNamara, Craig; Vasilevsky, Nicole; Carmody, Leigh C; Gourdine, J P; Gargano, Michael; McMurry, Julie A; Danis, Daniel; Mungall, Christopher J; Smedley, Damian; Haendel, Melissa; Robinson, Peter N Current protocols in human genetics. 31479590 2019 Sep;
A privacy-preserving distributed filtering framework for NLP artifacts. Sadat, Md Nazmus; Aziz, Md Momin Al; Mohammed, Noman; Pakhomov, Serguei; Liu, Hongfang; Jiang, Xiaoqian BMC medical informatics and decision making. 31493797 2019 Sep 07;
Low-Dimensional Density Ratio Estimation for Covariate Shift Correction. Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun Proceedings of machine learning research. 31497776 2019 Apr;
Data-Driven Approach to Multiple-Source Domain Adaptation. Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun Proceedings of machine learning research. 31497777 2019 Apr;
Causal Discovery and Forecasting in Nonstationary Environments with State-Space Models. Huang, Biwei; Zhang, Kun; Gong, Mingming; Glymour, Clark Proceedings of machine learning research. 31497778 2019 Jun;
dbgap2x: an R package to explore and extract data from the database of Genotypes and Phenotypes (dbGaP). Versmée, Grégoire; Versmée, Laura; Dusenne, Mikaël; Jalali, Niloofar; Avillach, Paul Bioinformatics (Oxford, England) 31504194 2020 02 15
Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts. Tsueng, Ginger; Nanis, Max; Fouquier, Jennifer T; Mayers, Michael; Good, Benjamin M; Su, Andrew I Bioinformatics (Oxford, England). 31504205 2019 Sep 03;
The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment. Zhang, Yi; Manjunath, Mohith; Yan, Jialu; Baur, Brittany A; Zhang, Shilu; Roy, Sushmita; Song, Jun S Frontiers in genetics. 31507631 2019;
Multifaceted protein-protein interaction prediction based on Siamese residual RCNN. Chen, Muhao; Ju, Chelsea J-T; Zhou, Guangyu; Chen, Xuelu; Zhang, Tianran; Chang, Kai-Wei; Zaniolo, Carlo; Wang, Wei Bioinformatics (Oxford, England). 31510705 2019 07 15;
Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes. Xue, Yifan; Cooper, Gregory; Cai, Chunhui; Lu, Songjian; Hu, Baoli; Ma, Xiaojun; Lu, Xinghua Scientific reports. 31519988 2019 Sep 13;
Amalgamating evidence of dynamics. Danks, David; Plis, Sergey Synthese. 31527987 2019 Aug;
Predicting Dynamic Embedding Trajectory in Temporal Interaction Networks. Kumar, Srijan; Zhang, Xikun; Leskovec, Jure KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. 31538030 2019 Aug;
Inferring Multidimensional Rates of Aging from Cross-Sectional Data. Pierson, Emma; Koh, Pang Wei; Hashimoto, Tatsunori; Koller, Daphne; Leskovec, Jure; Eriksson, Nicholas; Liang, Percy Proceedings of machine learning research. 31538144 2019 Apr;
Predicting pregnancy using large-scale data from a women's health tracking mobile application. Liu, Bo; Shi, Shuyang; Wu, Yongshang; Thomas, Daniel; Symul, Laura; Pierson, Emma; Leskovec, Jure Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 31538145 2019 May;
Evaluating FAIR maturity through a scalable, automated, community-governed framework. Wilkinson, Mark D; Dumontier, Michel; Sansone, Susanna-Assunta; Bonino da Silva Santos, Luiz Olavo; Prieto, Mario; Batista, Dominique; McQuilton, Peter; Kuhn, Tobias; Rocca-Serra, Philippe; Crosas, Merc?; Schultes, Erik Scientific data. 31541130 2019 09 20;
The case for openness in engineering research. Berg, Devin R; Niemeyer, Kyle E F1000Research. 31543946 2018;
A fast divide-and-conquer sparse Cox regression. Wang, Yan; Hong, Chuan; Palmer, Nathan; Di, Qian; Schwartz, Joel; Kohane, Isaac; Cai, Tianxi Biostatistics (Oxford, England) 31545341 2021 Apr 10
Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation. Guerrero, Jose M; Adluru, Nagesh; Bendlin, Barbara B; Goldsmith, H Hill; Schaefer, Stacey M; Davidson, Richard J; Kecskemeti, Steven R; Zhang, Hui; Alexander, Andrew L PloS one 31553719 2019
Learning Disentangled Semantic Representation for Domain Adaptation. Cai, Ruichu; Li, Zijian; Wei, Pengfei; Qiao, Jie; Zhang, Kun; Hao, Zhifeng IJCAI : proceedings of the conference. 31555039 2019 Aug;
Domain Generalization via Multidomain Discriminant Analysis. Hu, Shoubo; Zhang, Kun; Chen, Zhitang; Chan, Laiwan Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. 31555066 2019 Jul;
The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data. Kim, Hosung; Irimia, Andrei; Hobel, Samuel M; Pogosyan, Mher; Tang, Haoteng; Petrosyan, Petros; Blanco, Rita Esquivel Castelo; Duffy, Ben A; Zhao, Lu; Crawford, Karen L; Liew, Sook-Lei; Clark, Kristi; Law, Meng; Mukherjee, Pratik; Manley, Geoffrey T; Van Horn, John D; Toga, Arthur W Frontiers in neuroinformatics 31555116 2019
Chalcones as a basis for computer-aided drug design: innovative approaches to tackle malaria. Lima, Marilia Nn; Neves, Bruno J; Cassiano, Gustavo C; Gomes, Marcelo N; Tomaz, Kaira Cp; Ferreira, Leticia T; Tavella, Tatyana A; Calit, Juliana; Bargieri, Daniel Y; Muratov, Eugene N; Costa, Fabio Tm; Andrade, Carolina Horta Future medicinal chemistry. 31556721 2019 10;
Safe Expectations: Current State and Future Directions for Medication Safety in Pregnancy Research. Wood, Mollie E; Andrade, Susan E; Toh, Sengwee Clinical therapeutics. 31563392 2019 Sep 25;
Robot-Enabled Support of Daily Activities in Smart Home Environments. Wilson, Garrett; Pereyda, Christopher; Raghunath, Nisha; de la Cruz, Gabriel; Goel, Shivam; Nesaei, Sepehr; Minor, Bryan; Schmitter-Edgecombe, Maureen; Taylor, Matthew E; Cook, Diane J Cognitive systems research. 31565029 2019 May;
Training Complex Models with Multi-Task Weak Supervision. Ratner, Alexander; Hancock, Braden; Dunnmon, Jared; Sala, Frederic; Pandey, Shreyash; Ré, Christopher Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence. 31565535 2019 Jan-Feb;
Sample size considerations for comparing dynamic treatment regimens in a sequential multiple-assignment randomized trial with a continuous longitudinal outcome. Seewald, Nicholas J; Kidwell, Kelley M; Nahum-Shani, Inbal; Wu, Tianshuang; McKay, James R; Almirall, Daniel Statistical methods in medical research. 31571526 2019 Oct 01;
Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. Ignjatovic, Vera; Geyer, Philipp E; Palaniappan, Krishnan K; Chaaban, Jessica E; Omenn, Gilbert S; Baker, Mark S; Deutsch, Eric W; Schwenk, Jochen M Journal of proteome research. 31573204 2019 Dec 06;
Medical device surveillance with electronic health records. Callahan, Alison; Fries, Jason A; Ré, Christopher; Huddleston 3rd, James I; Giori, Nicholas J; Delp, Scott; Shah, Nigam H NPJ digital medicine. 31583282 2019;
Noninvasive Detection of Colorectal Carcinomas Using Serum Protein Biomarkers. Ivancic, Melanie M; Megna, Bryant W; Sverchkov, Yuriy; Craven, Mark; Reichelderfer, Mark; Pickhardt, Perry J; Sussman, Michael R; Kennedy, Gregory D The Journal of surgical research. 31586890 2020 02;
Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations. Ong, Carmichael F; Geijtenbeek, Thomas; Hicks, Jennifer L; Delp, Scott L PLoS computational biology. 31589597 2019 10;
A Logical Model of Homology for Comparative Biology. Mabee, Paula M; Balhoff, James P; Dahdul, Wasila M; Lapp, Hilmar; Mungall, Christopher J; Vision, Todd J Systematic biology 31596473 2020 03 01
An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling. Hong, Na; Wang, Kui; Wu, Sizhu; Shen, Feichen; Yao, Lixia; Jiang, Guoqian Journal of healthcare informatics research. 31598581 2019 Sep;
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. Deutsch, Eric W; Lane, Lydie; Overall, Christopher M; Bandeira, Nuno; Baker, Mark S; Pineau, Charles; Moritz, Robert L; Corrales, Fernando; Orchard, Sandra; Van Eyk, Jennifer E; Paik, Young-Ki; Weintraub, Susan T; Vandenbrouck, Yves; Omenn, Gilbert S Journal of proteome research. 31599596 2019 Dec 06;
Transcriptional regulatory model of fibrosis progression in the human lung. McDonough, John E; Ahangari, Farida; Li, Qin; Jain, Siddhartha; Verleden, Stijn E; Herazo-Maya, Jose; Vukmirovic, Milica; DeIuliis, Giuseppe; Tzouvelekis, Argyrios; Tanabe, Naoya; Chu, Fanny; Yan, Xiting; Verschakelen, Johny; Homer, Robert J; Manatakis, Dimitris V; Zhang, Junke; Ding, Jun; Maes, Karen; De Sadeleer, Laurens; Vos, Robin; Neyrinck, Arne; Benos, Panayiotis V; Bar-Joseph, Ziv; Tantin, Dean; Hogg, James C; Vanaudenaerde, Bart M; Wuyts, Wim A; Kaminski, Naftali JCI insight. 31600171 2019 Nov 14;
Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways. Horgusluoglu-Moloch, Emrin; Risacher, Shannon L; Crane, Paul K; Hibar, Derrek; Thompson, Paul M; Saykin, Andrew J; Nho, Kwangsik; Alzheimer?s Disease Neuroimaging Initiative (ADNI) Scientific reports. 31601890 2019 Oct 10;
DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark. Linderman, Michael D; Chia, Davin; Wallace, Forrest; Nothaft, Frank A BMC bioinformatics. 31604420 2019 Oct 11;
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. Liao, Katherine P; Sun, Jiehuan; Cai, Tianrun A; Link, Nicholas; Hong, Chuan; Huang, Jie; Huffman, Jennifer E; Gronsbell, Jessica; Zhang, Yichi; Ho, Yuk-Lam; Castro, Victor; Gainer, Vivian; Murphy, Shawn N; O'Donnell, Christopher J; Gaziano, J Michael; Cho, Kelly; Szolovits, Peter; Kohane, Isaac S; Yu, Sheng; Cai, Tianxi Journal of the American Medical Informatics Association : JAMIA. 31613361 2019 11 01;
An overlapping pattern of cerebral cortical thinning is associated with both positive symptoms and aggression in schizophrenia via the ENIGMA consortium. Wong, Ting Yat; Radua, Joaquim; Pomarol-Clotet, Edith; Salvador, Raymond; Albajes-Eizagirre, Anton; Solanes, Aleix; Canales-Rodriguez, Erick J; Guerrero-Pedraza, Amalia; Sarro, Salvador; Kircher, Tilo; Nenadic, Igor; Krug, Axel; Grotegerd, Dominik; Dannlowski, Udo; Borgwardt, Stefan; Riecher-Rössler, Anita; Schmidt, Andre; Andreou, Christina; Huber, Christian G; Turner, Jessica; Calhoun, Vince; Jiang, Wenhao; Clark, Sarah; Walton, Esther; Spalletta, Gianfranco; Banaj, Nerisa; Piras, Fabrizio; Ciullo, Valentina; Vecchio, Daniela; Lebedeva, Irina; Tomyshev, Alexander S; Kaleda, Vasily; Klushnik, Tatyana; Filho, Geraldo Busatto; Zanetti, Marcus Vinicius; Serpa, Mauricio Henriques; Penteado Rosa, Pedro Gomes; Hashimoto, Ryota; Fukunaga, Masaki; Richter, Anja; Krämer, Bernd; Gruber, Oliver; Voineskos, Aristotle N; Dickie, Erin W; Tomecek, David; Skoch, Antonin; Spaniel, Filip; Hoschl, Cyril; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Holleran, Laurena; Ciufolini, Simone; Marques, Tiago Reis; Dazzan, Paola; Murray, Robin; Lamsma, Jelle; Cahn, Wiepke; van Haren, Neeltje; Díaz-Zuluaga, Ana M; Pineda-Zapata, Julián A; Vargas, Cristian; López-Jaramillo, Carlos; van Erp, Theo G M; Gur, Ruben C; Nickl-Jockschat, Thomas Psychological medicine. 31615588 2020 09;
Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia. Paik, Hyojung; Kan, Matthew J; Rappoport, Nadav; Hadley, Dexter; Sirota, Marina; Chen, Bin; Manber, Udi; Cho, Seong Beom; Butte, Atul J Scientific data. 31615985 2019 10 15;
Systemic Mitochondrial Oxidative Phosphorylation Protein Levels Correlate with Neuroimaging Measures in Chronically HIV-Infected Individuals. Kallianpur, Kalpana J; Walker, Maegen; Gerschenson, Mariana; Shikuma, Cecilia M; Gangcuangco, Louie Mar A; Kohorn, Lindsay; Libutti, Daniel E; Nir, Talia M; Jahanshad, Neda; Thompson, Paul M; Paul, Robert AIDS research and human retroviruses. 31617381 2020 01;
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. Hong, Na; Wen, Andrew; Stone, Daniel J; Tsuji, Shintaro; Kingsbury, Paul R; Rasmussen, Luke V; Pacheco, Jennifer A; Adekkanattu, Prakash; Wang, Fei; Luo, Yuan; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian Journal of biomedical informatics. 31622801 2019 Nov;
Hierarchical associations of alcohol use disorder symptoms in late adolescence with markers during early adolescence. Kühn, Simone; Lisofsky, Nina; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Gallinat, Jürgen; IMAGEN Consortium Addictive behaviors. 31622946 2020 01;
Investigating genetic links between grapheme-colour synaesthesia and neuropsychiatric traits. Tilot, Amanda K; Vino, Arianna; Kucera, Katerina S; Carmichael, Duncan A; van den Heuvel, Loes; den Hoed, Joery; Sidoroff-Dorso, Anton V; Campbell, Archie; Porteous, David J; St Pourcain, Beate; van Leeuwen, Tessa M; Ward, Jamie; Rouw, Romke; Simner, Julia; Fisher, Simon E Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 31630655 2019 12 09;
Effects of ketamine and midazolam on resting state connectivity and comparison with ENIGMA connectivity deficit patterns in schizophrenia. Adhikari, Bhim M; Dukart, Juergen; Hipp, Joerg F; Forsyth, Anna; McMillan, Rebecca; Muthukumaraswamy, Suresh D; Ryan, Meghann C; Hong, L Elliot; Eickhoff, Simon B; Jahandshad, Neda; Thompson, Paul M; Rowland, Laura M; Kochunov, Peter Human brain mapping. 31633254 2020 Feb 15;
Behavioral problems in perinatally HIV-infected young children with early antiretroviral therapy and HIV-exposed uninfected young children: prevalence and associated factors. Jantarabenjakul, Watsamon; Chonchaiya, Weerasak; Puthanakit, Thanyawee; Anugulruengkitt, Suvaporn; Theerawit, Tuangtip; Payapanon, Jesdapron; Sophonphan, Jiratchaya; Veeravigrom, Montida; Jahanshad, Neda; Thompson, Paul M; Ananworanich, Jintanat; Malee, Kathleen; Pancharoen, Chitsanu; DOET study AIDS care. 31635484 2020 04;
SMARTS: the social media-based addiction recovery and intervention targeting server. Jha, Deeptanshu; Singh, Rahul Bioinformatics (Oxford, England) 31647520 2019 Oct 24
TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome. Garlid, Anders O; Schaffer, Calvin T; Kim, Jaewoo; Bhatt, Hirsh; Guevara-Gonzalez, Vladimir; Ping, Peipei Gene. 31647997 2020 Feb 05;
Effects of initial planning on task execution performance of older adults: A naturalistic assessment paradigm. Brown, Katelyn D; Schmitter-Edgecombe, Maureen Journal of clinical and experimental neuropsychology 31658865 2020 02
A Novel Machine Learning Model Developed to Assist in Patient Selection for Outpatient Total Shoulder Arthroplasty. Biron, Dustin R; Sinha, Ishan; Kleiner, Justin E; Aluthge, Dilum P; Goodman, Avi D; Sarkar, I Neil; Cohen, Eric; Daniels, Alan H The Journal of the American Academy of Orthopaedic Surgeons. 31663914 2019 Oct 24;
Association of Copy Number Variation of the 15q11.2 BP1-BP2 Region With Cortical and Subcortical Morphology and Cognition. Writing Committee for the ENIGMA-CNV Working Group; van der Meer, Dennis; Sønderby, Ida E; Kaufmann, Tobias; Walters, G Bragi; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Micael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas B; Blangero, John; Boomsma, Dorret I; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Cahn, Wiepke; Calhoun, Vince D; Caspers, Svenja; Cavalleri, Gianpiero L; Ching, Christopher R K; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivieres, Sylvane; Di Forti, Marta; Doherty, Joanne L; Donohoe, Gary; Ehrlich, Stefan; Eising, Else; Espeseth, Thomas; Fisher, Simon E; Fladby, Tormod; Frei, Oleksandr; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans J; Groenewold, Nynke A; Gústafsson, Ómar; Haavik, Jan; Haberg, Asta K; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Hibar, Derrek P; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Ikeda, Masashi; Jacquemont, Sébastien; Jahanshad, Neda; Jockwitz, Christiane; Johansson, Stefan; Jönsson, Erik G; Kikuchi, Masataka; Knowles, Emma E M; Kwok, John B; Le Hellard, Stephanie; Linden, David E J; Liu, Jingyu; Lundervold, Arvid; Lundervold, Astri J; Martin, Nicholas G; Mather, Karen A; Mathias, Samuel R; McMahon, Katie L; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Moreau, Clara; Morris, Derek W; Mühleisen, Thomas W; Murray, Robin M; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel A; Owen, Michael J; Paus, Tomas; Pausova, Zdenka; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Quinlan, Erin Burke; Reinbold, Céline S; Reis Marques, Tiago; Rucker, James J H; Sachdev, Perminder S; Sando, Sigrid B; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Silva, Ana I; Sisodiya, Sanjay M; Steen, Vidar M; Stein, Dan J; Strike, Lachlan T; Tamnes, Christian K; Teumer, Alexander; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; Uhlmann, Anne; Úlfarsson, Magnús Ö; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Wen, Wei; Wittfeld, Katharina; Wright, Margaret J; Zayats, Tetyana; Dale, Anders M; Djurovic, Srdjan; Agartz, Ingrid; Westlye, Lars T; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul M; Andreassen, Ole A JAMA psychiatry 31665216 2020 04 01
Risk factors for development of aminoglycoside resistance among gram-negative rods. Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists. 31665763 2019 10 30;
Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. Postema, Merel C; van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Filho, Geraldo Busatto; Calderoni, Sara; Calvo, Rosa; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis S; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Fair, Damien; Fedor, Jennifer; Feng, Xin; Fitzgerald, Jackie; Floris, Dorothea L; Freitag, Christine M; Gallagher, Louise; Glahn, David C; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; King, Joseph A; Kong, Xiang Zhen; Lazaro, Luisa; Lerch, Jason P; Luna, Beatriz; Martinho, Mauricio M; McGrath, Jane; Medland, Sarah E; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Puig, Olga; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot J; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Thompson, Paul M; Fisher, Simon E; Buitelaar, Jan K; Francks, Clyde Nature communications 31673008 2019 10 31
Identifying biological markers for improved precision medicine in psychiatry. Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium Molecular psychiatry. 31676814 2020 Feb;
FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. Clarke, Daniel J B; Wang, Lily; Jones, Alex; Wojciechowicz, Megan L; Torre, Denis; Jagodnik, Kathleen M; Jenkins, Sherry L; McQuilton, Peter; Flamholz, Zachary; Silverstein, Moshe C; Schilder, Brian M; Robasky, Kimberly; Castillo, Claris; Idaszak, Ray; Ahalt, Stanley C; Williams, Jason; Schurer, Stephan; Cooper, Daniel J; de Miranda Azevedo, Ricardo; Klenk, Juergen A; Haendel, Melissa A; Nedzel, Jared; Avillach, Paul; Shimoyama, Mary E; Harris, Rayna M; Gamble, Meredith; Poten, Rudy; Charbonneau, Amanda L; Larkin, Jennie; Brown, C Titus; Bonazzi, Vivien R; Dumontier, Michel J; Sansone, Susanna-Assunta; Ma'ayan, Avi Cell systems 31677972 2019 11 27
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Deutsch, Eric W; Bandeira, Nuno; Sharma, Vagisha; Perez-Riverol, Yasset; Carver, Jeremy J; Kundu, Deepti J; García-Seisdedos, David; Jarnuczak, Andrew F; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; Hermjakob, Henning; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan A Nucleic acids research. 31686107 2020 Jan 08;
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Stathias, Vasileios; Turner, John; Koleti, Amar; Vidovic, Dusica; Cooper, Daniel; Fazel-Najafabadi, Mehdi; Pilarczyk, Marcin; Terryn, Raymond; Chung, Caty; Umeano, Afoma; Clarke, Daniel J B; Lachmann, Alexander; Evangelista, John Erol; Ma'ayan, Avi; Medvedovic, Mario; Schürer, Stephan C Nucleic acids research. 31701147 2020 01 08;
Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data. Pomaznoy, Mikhail; Sethi, Ashu; Greenbaum, Jason; Peters, Bjoern Scientific reports. 31704962 2019 Nov 08;
Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. Khatib, Firas; Desfosses, Ambroise; Foldit Players; Koepnick, Brian; Flatten, Jeff; Popovi?, Zoran; Baker, David; Cooper, Seth; Gutsche, Irina; Horowitz, Scott PLoS biology. 31714936 2019 11;
Interaction effect of alcohol consumption and Alzheimer disease polygenic risk score on the brain cortical thickness of cognitively normal subjects. Matloff, William J; Zhao, Lu; Ning, Kaida; Conti, David V; Toga, Arthur W Alcohol (Fayetteville, N.Y.). 31734309 2020 Jun;
Nanopore native RNA sequencing of a human poly(A) transcriptome. Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston Nature methods 31740818 2019 12
When can Multi-Site Datasets be Pooled for Regression? Hypothesis Tests, ?2-consistency and Neuroscience Applications. Zhou, Hao Henry; Zhang, Yilin; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas Proceedings of machine learning research. 31742253 2017 Aug;
Genotype-dependent epigenetic regulation of DLGAP2 in alcohol use and dependence. Meng, Weida; Sjöholm, Louise K; Kononenko, Olga; Tay, Nicole; Zhang, Dandan; Sarkisyan, Daniil; Geske, Jennifer R; Ing, Alex; Qiu, Wenqing; Watanabe, Hiroyuki; Almamoun, Radwa; Frieling, Helge; Bleich, Stefan; Cui, Donghong; Biernacka, Joanna M; Mayfield, R Dayne; Dang, Yongjun; Karpyak, Victor M; Schumann, Gunter; IMAGEN Consortium; Bakalkin, Georgy; Ekström, Tomas J; Rüegg, Joelle; Liu, Yun Molecular psychiatry 31745236 2021 08
Subcortical surface morphometry in substance dependence: An ENIGMA addiction working group study. Chye, Yann; Mackey, Scott; Gutman, Boris A; Ching, Christopher R K; Batalla, Albert; Blaine, Sara; Brooks, Samantha; Caparelli, Elisabeth C; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Jahanshad, Neda; Kaag, Anne M; Korucuoglu, Ozlem; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Meda, Shashwath A; Momenan, Reza; Morales, Angelica; Orr, Catherine; Paulus, Martin P; Pearlson, Godfrey; Reneman, Liesbeth; Schmaal, Lianne; Sinha, Rajita; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Tang, Deborah; Uhlmann, Anne; van Holst, Ruth; Veltman, Dick J; Verdejo-Garcia, Antonio; Wiers, Reinout W; Yücel, Murat; Thompson, Paul M; Conrod, Patricia; Garavan, Hugh Addiction biology. 31746534 2019 Nov 20;
Sympathetic activity contributes to the fMRI signal. Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, Jeff Communications biology. 31754651 2019;
Designing Videogames to Crowdsource Accelerometer Data Annotation for Activity Recognition Research. Ponnada, Aditya; Cooper, Seth; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, Stephen Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play. 31768505 2019 Oct;
Snorkel DryBell: A Case Study in Deploying Weak Supervision at Industrial Scale. Bach, Stephen H; Rodriguez, Daniel; Liu, Yintao; Luo, Chong; Shao, Haidong; Xia, Cassandra; Sen, Souvik; Ratner, Alex; Hancock, Braden; Alborzi, Houman; Kuchhal, Rahul; Ré, Chris; Malkin, Rob Proceedings. ACM-Sigmod International Conference on Management of Data. 31777414 2019 Jun-Jul;
Snuba: Automating Weak Supervision to Label Training Data. Varma, Paroma; Ré, Christopher Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. 31777681 2018 Nov;
Low-Precision Random Fourier Features for Memory-Constrained Kernel Approximation. Zhang, Jian; May, Avner; Dao, Tri; Ré, Christopher Proceedings of machine learning research. 31777846 2019 Apr;
Learning Fast Algorithms for Linear Transforms Using Butterfly Factorizations. Dao, Tri; Gu, Albert; Eichhorn, Matthew; Rudra, Atri; Ré, Christopher Proceedings of machine learning research. 31777847 2019 Jun;
A Kernel Theory of Modern Data Augmentation. Dao, Tri; Gu, Albert; Ratner, Alexander J; Smith, Virginia; De Sa, Christopher; Ré, Christopher Proceedings of machine learning research. 31777848 2019 Jun;
Expertise and Engagement: Re-Designing Citizen Science Games With Players' Minds in Mind. Miller, Josh Aaron; Narayan, Uttkarsh; Hantsbarger, Matthew; Cooper, Seth; El-Nasr, Magy Seif FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. 31788674 2019 Aug;
From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer. Tao, Yifeng; Cai, Chunhui; Cohen, William W; Lu, Xinghua Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 31797588 2020;
Navigating ethical quandaries with the privacy dilemma of biomedical datasets. Gürsoy, Gamze; Doerr, Megan; Wilbanks, John; Wagner, Jennifer K; Tang, Haixu; Brenner, Steven E Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 31797643 2020;
Recursive Feature Elimination by Sensitivity Testing. Escanilla, Nicholas Sean; Hellerstein, Lisa; Kleiman, Ross; Kuang, Zhaobin; Shull, James D; Page, David Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications. 31799516 2018 Dec;
Reactome and ORCID-fine-grained credit attribution for community curation. Viteri, Guilherme; Matthews, Lisa; Varusai, Thawfeek; Gillespie, Marc; Milacic, Marija; Cook, Justin; Weiser, Joel; Shorser, Solomon; Sidiropoulos, Konstantinos; Fabregat, Antonio; Haw, Robin; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning Database : the journal of biological databases and curation. 31802127 2019 01 01;
Learning the Structure of a Nonstationary Vector Autoregression. Malinsky, Daniel; Spirtes, Peter Proceedings of machine learning research. 31803862 2019 Apr;
Privacy-protecting estimation of adjusted risk ratios using modified Poisson regression in multi-center studies. Shu, Di; Young, Jessica G; Toh, Sengwee BMC medical research methodology. 31805872 2019 Dec 05;
Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group. Jia, Tianye; Chu, Congying; Liu, Yun; van Dongen, Jenny; Papastergios, Evangelos; Armstrong, Nicola J; Bastin, Mark E; Carrillo-Roa, Tania; den Braber, Anouk; Harris, Mathew; Jansen, Rick; Liu, Jingyu; Luciano, Michelle; Ori, Anil P S; Roiz Santiañez, Roberto; Ruggeri, Barbara; Sarkisyan, Daniil; Shin, Jean; Sungeun, Kim; Tordesillas Gutiérrez, Diana; Van't Ent, Dennis; Ames, David; Artiges, Eric; Bakalkin, Georgy; Banaschewski, Tobias; Bokde, Arun L W; Brodaty, Henry; Bromberg, Uli; Brouwer, Rachel; Büchel, Christian; Burke Quinlan, Erin; Cahn, Wiepke; de Zubicaray, Greig I; Ehrlich, Stefan; Ekström, Tomas J; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hoare, Jacqueline; Ittermann, Bernd; Jahanshad, Neda; Jiang, Jiyang; Kwok, John B; Martin, Nicholas G; Martinot, Jean-Luc; Mather, Karen A; McMahon, Katie L; McRae, Allan F; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Sämann, Philipp G; Schofield, Peter R; Smolka, Michael N; Stein, Dan J; Strike, Lachlan T; Teeuw, Jalmar; Thalamuthu, Anbupalam; Trollor, Julian; Walter, Henrik; Wardlaw, Joanna M; Wen, Wei; Whelan, Robert; Apostolova, Liana G; Binder, Elisabeth B; Boomsma, Dorret I; Calhoun, Vince; Crespo-Facorro, Benedicto; Deary, Ian J; Hulshoff Pol, Hilleke; Ophoff, Roel A; Pausova, Zdenka; Sachdev, Perminder S; Saykin, Andrew; Wright, Margaret J; Thompson, Paul M; Schumann, Gunter; Desrivières, Sylvane Molecular psychiatry. 31811260 2019 Dec 06;
Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets. Morrow, Alyssa Kramer; He, George Zhixuan; Nothaft, Frank Austin; Tu, Eric Tongching; Paschall, Justin; Yosef, Nir; Joseph, Anthony Douglas Cell systems. 31812694 2019 12 18;
Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. Barry, Christopher; Schmitz, Matthew T; Argus, Cara; Bolin, Jennifer M; Probasco, Mitchell D; Leng, Ning; Duffin, Bret M; Steill, John; Swanson, Scott; McIntosh, Brian E; Stewart, Ron; Kendziorski, Christina; Thomson, James A; Bacher, Rhonda PLoS computational biology. 31815944 2019 12;
Cortical Surfaces Mediate the Relationship Between Polygenic Scores for Intelligence and General Intelligence. Lett, Tristram A; Vogel, Bob O; Ripke, Stephan; Wackerhagen, Carolin; Erk, Susanne; Awasthi, Swapnil; Trubetskoy, Vassily; Brandl, Eva J; Mohnke, Sebastian; Veer, Ilya M; Nöthen, Markus M; Rietschel, Marcella; Degenhardt, Franziska; Romanczuk-Seiferth, Nina; Witt, Stephanie H; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Tost, Heike; Meyer-Lindenberg, Andreas; Heinz, Andreas; Walter, Henrik; IMAGEN consortium Cerebral cortex (New York, N.Y. : 1991). 31828294 2020 04 14;
Cortical Microstructural Alterations in Mild Cognitive Impairment and Alzheimer's Disease Dementia. Vogt, Nicholas M; Hunt, Jack F; Adluru, Nagesh; Dean, Douglas C; Johnson, Sterling C; Asthana, Sanjay; Yu, John-Paul J; Alexander, Andrew L; Bendlin, Barbara B Cerebral cortex (New York, N.Y. : 1991) 31833550 2020 05 14