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| Shared genetic factors influence amygdala volumes and risk for alcoholism. |
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Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
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| Regular fish consumption and age-related brain gray matter loss. |
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American journal of preventive medicine. |
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| Heritability of head motion during resting state functional MRI in 462 healthy twins. |
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Genes, brain, and behavior. |
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| Relationship between Systemic and Cerebral Vascular Disease and Brain Structure Integrity in Normal Elderly Individuals. |
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Journal of Alzheimer's disease : JAD. |
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| Designing adaptive intensive interventions using methods from engineering. |
Lagoa, Constantino M; Bekiroglu, Korkut; Lanza, Stephanie T; Murphy, Susan A |
Journal of consulting and clinical psychology. |
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| Physical activity, body mass index, and brain atrophy in Alzheimer's disease. |
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Neurobiology of aging. |
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Neurobiology of aging. |
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| Brain connectivity and novel network measures for Alzheimer's disease classification. |
Prasad, Gautam; Joshi, Shantanu H; Nir, Talia M; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Neurobiology of aging. |
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| Introduction to SMART designs for the development of adaptive interventions: with application to weight loss research. |
Almirall, Daniel; Nahum-Shani, Inbal; Sherwood, Nancy E; Murphy, Susan A |
Translational behavioral medicine. |
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| The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. |
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Database : the journal of biological databases and curation. |
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| Alignathon: a competitive assessment of whole-genome alignment methods. |
Earl, Dent; Nguyen, Ngan; Hickey, Glenn; Harris, Robert S; Fitzgerald, Stephen; Beal, Kathryn; Seledtsov, Igor; Molodtsov, Vladimir; Raney, Brian J; Clawson, Hiram; Kim, Jaebum; Kemena, Carsten; Chang, Jia-Ming; Erb, Ionas; Poliakov, Alexander; Hou, Minmei; Herrero, Javier; Kent, William James; Solovyev, Victor; Darling, Aaron E; Ma, Jian; Notredame, Cedric; Brudno, Michael; Dubchak, Inna; Haussler, David; Paten, Benedict |
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BMC genomics. |
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Biology of mood & anxiety disorders. |
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Genome biology. |
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The American journal of psychiatry. |
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Electronic journal of statistics. |
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Psychosomatic medicine. |
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| The UCSC Cancer Genomics Browser: update 2015. |
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Nucleic acids research. |
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| A Comparison of Methamphetamine Users to a Matched NHANES Cohort: Propensity Score Analyses for Oral Health Care and Dental Service Need. |
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The journal of behavioral health services & research. |
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Annual review of statistics and its application. |
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| RADIA: RNA and DNA integrated analysis for somatic mutation detection. |
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Brain : a journal of neurology. |
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| Processing shotgun proteomics data on the Amazon cloud with the trans-proteomic pipeline. |
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Molecular & cellular proteomics : MCP. |
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| Altered white matter microstructure is associated with social cognition and psychotic symptoms in 22q11.2 microdeletion syndrome. |
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Frontiers in behavioral neuroscience. |
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| Comparative Effectiveness Research: A Roadmap for Physical Activity and Lifestyle. |
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| The UCSC Genome Browser database: 2015 update. |
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| Occipital sources of resting-state alpha rhythms are related to local gray matter density in subjects with amnesic mild cognitive impairment and Alzheimer's disease. |
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Neurobiology of aging. |
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| Diffusion weighted imaging-based maximum density path analysis and classification of Alzheimer's disease. |
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Neurobiology of aging. |
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| Does MRI scan acceleration affect power to track brain change? |
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Neurobiology of aging. |
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| Connectivity network measures predict volumetric atrophy in mild cognitive impairment. |
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Neurobiology of aging. |
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| Higher homocysteine associated with thinner cortical gray matter in 803 participants from the Alzheimer's Disease Neuroimaging Initiative. |
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Neurobiology of aging. |
25444607 |
2015 Jan; |
| The effect of reverse remodeling on long-term survival in mildly symptomatic patients with heart failure receiving cardiac resynchronization therapy: results of the REVERSE study. |
Gold, Michael R; Daubert, Claude; Abraham, William T; Ghio, Stefano; St John Sutton, Martin; Hudnall, John Harrison; Cerkvenik, Jeffrey; Linde, Cecilia |
Heart rhythm. |
25460860 |
2015 Mar; |
| Effects of changing from non-accelerated to accelerated MRI for follow-up in brain atrophy measurement. |
Leung, Kelvin K; Malone, Ian M; Ourselin, Sebastien; Gunter, Jeffrey L; Bernstein, Matt A; Thompson, Paul M; Jack Jr, Clifford R; Weiner, Michael W; Fox, Nick C; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
25481794 |
2015 Feb 15; |
| Partial volume correction in quantitative amyloid imaging. |
Su, Yi; Blazey, Tyler M; Snyder, Abraham Z; Raichle, Marcus E; Marcus, Daniel S; Ances, Beau M; Bateman, Randall J; Cairns, Nigel J; Aldea, Patricia; Cash, Lisa; Christensen, Jon J; Friedrichsen, Karl; Hornbeck, Russ C; Farrar, Angela M; Owen, Christopher J; Mayeux, Richard; Brickman, Adam M; Klunk, William; Price, Julie C; Thompson, Paul M; Ghetti, Bernadino; Saykin, Andrew J; Sperling, Reisa A; Johnson, Keith A; Schofield, Peter R; Buckles, Virginia; Morris, John C; Benzinger, Tammie L S; Dominantly Inherited Alzheimer Network |
NeuroImage. |
25485714 |
2015 Feb 15; |
| Carriers of a common variant in the dopamine transporter gene have greater dementia risk, cognitive decline, and faster ventricular expansion. |
Roussotte, Florence F; Gutman, Boris A; Hibar, Derrek P; Madsen, Sarah K; Narr, Katherine L; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Alzheimer's & dementia : the journal of the Alzheimer's Association. |
25496873 |
2015 Oct; |
| Genetics of microstructure of the corpus callosum in older adults. |
Kanchibhotla, Sri C; Mather, Karen A; Thalamuthu, Anbupalam; Zhuang, Lin; Schofield, Peter R; Kwok, John B J; Ames, David; Wright, Margaret J; Trollor, Julian N; Wen, Wei; Sachdev, Perminder S |
PloS one. |
25514436 |
2014; |
| Identifying Drug (Cocaine) Intake Events from Acute Physiological Response in the Presence of Free-living Physical Activity. |
Hossain, Syed Monowar; Ali, Amin Ahsan; Rahman, Mahbubur; Ertin, Emre; Epstein, David; Kennedy, Ashley; Preston, Kenzie; Umbricht, Annie; Chen, Yixin; Kumar, Santosh |
IPSN : [proceedings]. IPSN (Conference). |
25531010 |
2014; |
| Heart failure and respiratory hospitalizations are reduced in patients with heart failure and chronic obstructive pulmonary disease with the use of an implantable pulmonary artery pressure monitoring device. |
Krahnke, Jason S; Abraham, William T; Adamson, Philip B; Bourge, Robert C; Bauman, Jordan; Ginn, Greg; Martinez, Fernando J; Criner, Gerard J; Champion Trial Study Group |
Journal of cardiac failure. |
25541376 |
2015 Mar; |
| Stratifying patients at the risk of heart failure hospitalization using existing device diagnostic thresholds. |
Sharma, Vinod; Rathman, Lisa D; Small, Roy S; Whellan, David J; Koehler, Jodi; Warman, Eduardo; Abraham, William T |
Heart & lung : the journal of critical care. |
25543319 |
2015 Mar-Apr; |
| Abnormal hippocampal morphology in dissociative identity disorder and post-traumatic stress disorder correlates with childhood trauma and dissociative symptoms. |
Chalavi, Sima; Vissia, Eline M; Giesen, Mechteld E; Nijenhuis, Ellert R S; Draijer, Nel; Cole, James H; Dazzan, Paola; Pariante, Carmine M; Madsen, Sarah K; Rajagopalan, Priya; Thompson, Paul M; Toga, Arthur W; Veltman, Dick J; Reinders, Antje A T S |
Human brain mapping. |
25545784 |
2015 May; |
| Low plasma ApoE levels are associated with smaller hippocampal size in the Alzheimer's disease neuroimaging initiative cohort. |
Teng, Edmond; Chow, Nicole; Hwang, Kristy S; Thompson, Paul M; Gylys, Karen H; Cole, Gregory M; Jack Jr, Clifford R; Shaw, Leslie M; Trojanowski, John Q; Soares, Holly D; Weiner, Michael W; Apostolova, Liana G; Alzheimer?s Disease Neuroimaging Initiative |
Dementia and geriatric cognitive disorders. |
25547651 |
2014 Dec 24; |
| Impact of family structure and common environment on heritability estimation for neuroimaging genetics studies using Sequential Oligogenic Linkage Analysis Routines. |
Koran, Mary Ellen; Thornton-Wells, Tricia A; Jahanshad, Neda; Glahn, David C; Thompson, Paul M; Blangero, John; Nichols, Thomas E; Kochunov, Peter; Landman, Bennett A |
Journal of medical imaging (Bellingham, Wash.). |
25558465 |
2014 Jun 27; |
| Abnormalities in cortical gray matter density in borderline personality disorder. |
Rossi, R; Lanfredi, M; Pievani, M; Boccardi, M; Rasser, P E; Thompson, P M; Cavedo, E; Cotelli, M; Rosini, S; Beneduce, R; Bignotti, S; Magni, L R; Rillosi, L; Magnaldi, S; Cobelli, M; Rossi, G; Frisoni, G B |
European psychiatry : the journal of the Association of European Psychiatrists. |
25561291 |
2015 Feb; |
| Building a pan-genome reference for a population. |
Nguyen, Ngan; Hickey, Glenn; Zerbino, Daniel R; Raney, Brian; Earl, Dent; Armstrong, Joel; Kent, W James; Haussler, David; Paten, Benedict |
Journal of computational biology : a journal of computational molecular cell biology. |
25565268 |
2015 May; |
| Mechanisms and clinical consequences of untreated central sleep apnea in heart failure. |
Costanzo, Maria Rosa; Khayat, Rami; Ponikowski, Piotr; Augostini, Ralph; Stellbrink, Christoph; Mianulli, Marcus; Abraham, William T |
Journal of the American College of Cardiology. |
25572513 |
2015 Jan 06; |
| Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming. |
Kim, Daniel H; Marinov, Georgi K; Pepke, Shirley; Singer, Zakary S; He, Peng; Williams, Brian; Schroth, Gary P; Elowitz, Michael B; Wold, Barbara J |
Cell stem cell. |
25575081 |
2015 Jan 8; |
| Development of an online, publicly accessible naive Bayesian decision support tool for mammographic mass lesions based on the American College of Radiology (ACR) BI-RADS lexicon. |
Benndorf, Matthias; Kotter, Elmar; Langer, Mathias; Herda, Christoph; Wu, Yirong; Burnside, Elizabeth S |
European radiology. |
25576230 |
2015 Jun; |
| Multivariate General Linear Models (MGLM) on Riemannian Manifolds with Applications to Statistical Analysis of Diffusion Weighted Images. |
Kim, Hyunwoo J; Adluru, Nagesh; Collins, Maxwell D; Chung, Moo K; Bendlin, Barbara B; Johnson, Sterling C; Davidson, Richard J; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
25580070 |
2014 Jun 23; |
| CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations. |
Chikina, Maria; Zaslavsky, Elena; Sealfon, Stuart C |
Bioinformatics (Oxford, England). |
25583121 |
2015 May 15; |
| Stepwise group sparse regression (SGSR): gene-set-based pharmacogenomic predictive models with stepwise selection of functional priors. |
Jang, In Sock; Dienstmann, Rodrigo; Margolin, Adam A; Guinney, Justin |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
25592566 |
2015; |
| T-ReCS: stable selection of dynamically formed groups of features with application to prediction of clinical outcomes. |
Huang, Grace T; Tsamardinos, Ioannis; Raghu, Vineet; Kaminski, Naftali; Benos, Panayiotis V |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
25592602 |
2015; |
| Common genetic variants influence human subcortical brain structures. |
Hibar, Derrek P (see original citation for additional authors) |
Nature. |
25607358 |
2015 Apr 09; |
| Investigating the genetics of hippocampal volume in older adults without dementia. |
Mather, Karen A; Armstrong, Nicola J; Wen, Wei; Kwok, John B; Assareh, Amelia A; Thalamuthu, Anbupalam; Reppermund, Simone; Duesing, Konsta; Wright, Margaret J; Ames, David; Trollor, Julian N; Brodaty, Henry; Schofield, Peter R; Sachdev, Perminder S |
PloS one. |
25625606 |
2015; |
| Design and protocol of a randomized multiple behavior change trial: Make Better Choices 2 (MBC2). |
Pellegrini, Christine A; Steglitz, Jeremy; Johnston, Winter; Warnick, Jennifer; Adams, Tiara; McFadden, H G; Siddique, Juned; Hedeker, Donald; Spring, Bonnie |
Contemporary clinical trials. |
25625810 |
2015 Mar; |
| Genomic structural variants are linked with intellectual disability. |
Bulayeva, Kazima; Lesch, Klaus-Peter; Bulayev, Oleg; Walsh, Christopher; Glatt, Stephen; Gurgenova, Farida; Omarova, Jamilja; Berdichevets, Irina; Thompson, Paul M |
Journal of neural transmission (Vienna, Austria : 1996). |
25626716 |
2015 Sep; |
| Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics. |
Deutsch, Eric W; Mendoza, Luis; Shteynberg, David; Slagel, Joseph; Sun, Zhi; Moritz, Robert L |
Proteomics. Clinical applications. |
25631240 |
2015 Aug; |
| Detecting and targetting oncogenic fusion proteins in the genomic era. |
Davare, Monika A; Tognon, Cristina E |
Biology of the cell. |
25631473 |
2015 May; |
| Social embeddedness in an online weight management programme is linked to greater weight loss. |
Poncela-Casasnovas, Julia; Spring, Bonnie; McClary, Daniel; Moller, Arlen C; Mukogo, Rufaro; Pellegrini, Christine A; Coons, Michael J; Davidson, Miriam; Mukherjee, Satyam; Nunes Amaral, Luis A |
Journal of the Royal Society, Interface. |
25631561 |
2015 Mar 6; |
| Sleep disordered breathing and post-discharge mortality in patients with acute heart failure. |
Khayat, Rami; Jarjoura, David; Porter, Kyle; Sow, Angela; Wannemacher, Jacob; Dohar, Robert; Pleister, Adam; Abraham, William T |
European heart journal. |
25636743 |
2015 Jun 14; |
| Prevalence of metabolic syndrome and its association with physical capacity, disability, and self-rated health in Lifestyle Interventions and Independence for Elders Study participants. |
Botoseneanu, Anda; Ambrosius, Walter T; Beavers, Daniel P; de Rekeneire, Nathalie; Anton, Stephen; Church, Timothy; Folta, Sara C; Goodpaster, Bret H; King, Abby C; Nicklas, Barbara J; Spring, Bonnie; Wang, Xuewen; Gill, Thomas M; LIFE Study Groups |
Journal of the American Geriatrics Society. |
25645664 |
2015 Feb; |
| Impact of Early and Late Visual Deprivation on the Structure of the Corpus Callosum: A Study Combining Thickness Profile with Surface Tensor-Based Morphometry. |
Shi, Jie; Collignon, Olivier; Xu, Liang; Wang, Gang; Kang, Yue; Leporé, Franco; Lao, Yi; Joshi, Anand A; Leporé, Natasha; Wang, Yalin |
Neuroinformatics. |
25649876 |
2015 Jul; |
| Database of genomic biomarkers for cancer drugs and clinical targetability in solid tumors. |
Dienstmann, Rodrigo; Jang, In Sock; Bot, Brian; Friend, Stephen; Guinney, Justin |
Cancer discovery. |
25656898 |
2015 Feb; |
| Evaluation of an electronic health record-supported obesity management protocol implemented in a community health center: a cautionary note. |
Steglitz, Jeremy; Sommers, Mary; Talen, Mary R; Thornton, Louise K; Spring, Bonnie |
Journal of the American Medical Informatics Association : JAMIA. |
25665700 |
2015 Jul; |
| Gene interactions and structural brain change in early-onset Alzheimer's disease subjects using the pipeline environment. |
Moon, Seok Woo; Dinov, Ivo D; Zamanyan, Alen; Shi, Ran; Genco, Alex; Hobel, Sam; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Psychiatry investigation. |
25670955 |
2015 Jan; |
| Frontal and striatal alterations associated with psychopathic traits in adolescents. |
Yang, Yaling; Narr, Katherine L; Baker, Laura A; Joshi, Shantanu H; Jahanshad, Neda; Raine, Adrian; Thompson, Paul M |
Psychiatry research. |
25676553 |
2015 Mar 30; |
| Association of BNP and Troponin Levels with Outcome among Cardiac Resynchronization Therapy Recipients. |
Shalaby, Alaa A; Abraham, William T; Fonarow, Gregg C; Bersohn, Malcolm M; Gorcsan 3rd, John; Lee, Li-Yin; Halilovic, Jasmina; Saba, Samir; Maisel, Alan; Singh, Jagmeet P; Sonel, Ali; Kadish, Alan |
Pacing and clinical electrophysiology : PACE. |
25677851 |
2015 May; |
| Evolutionary signatures amongst disease genes permit novel methods for gene prioritization and construction of informative gene-based networks. |
Priedigkeit, Nolan; Wolfe, Nicholas; Clark, Nathan L |
PLoS genetics. |
25679399 |
2015 Feb; |
| Improved data analysis for the MinION nanopore sequencer. |
Jain, Miten; Fiddes, Ian T; Miga, Karen H; Olsen, Hugh E; Paten, Benedict; Akeson, Mark |
Nature methods. |
25686389 |
2015 Apr; |
| The Genome 10K Project: a way forward. |
Koepfli, Klaus-Peter; Paten, Benedict; Genome 10K Community of Scientists; O'Brien, Stephen J |
Annual review of animal biosciences. |
25689317 |
2015; |
| Integrative analysis of 111 reference human epigenomes. |
Roadmap Epigenomics Consortium; Kundaje, Anshul; Meuleman, Wouter; Ernst, Jason; Bilenky, Misha; Yen, Angela; Heravi-Moussavi, Alireza; Kheradpour, Pouya; Zhang, Zhizhuo; Wang, Jianrong; Ziller, Michael J; Amin, Viren; Whitaker, John W; Schultz, Matthew D; Ward, Lucas D; Sarkar, Abhishek; Quon, Gerald; Sandstrom, Richard S; Eaton, Matthew L; Wu, Yi-Chieh; Pfenning, Andreas R; Wang, Xinchen; Claussnitzer, Melina; Liu, Yaping; Coarfa, Cristian; Harris, R Alan; Shoresh, Noam; Epstein, Charles B; Gjoneska, Elizabeta; Leung, Danny; Xie, Wei; Hawkins, R David; Lister, Ryan; Hong, Chibo; Gascard, Philippe; Mungall, Andrew J; Moore, Richard; Chuah, Eric; Tam, Angela; Canfield, Theresa K; Hansen, R Scott; Kaul, Rajinder; Sabo, Peter J; Bansal, Mukul S; Carles, Annaick; Dixon, Jesse R; Farh, Kai-How; Feizi, Soheil; Karlic, Rosa; Kim, Ah-Ram; Kulkarni, Ashwinikumar; Li, Daofeng; Lowdon, Rebecca; Elliott, GiNell; Mercer, Tim R; Neph, Shane J; Onuchic, Vitor; Polak, Paz; Rajagopal, Nisha; Ray, Pradipta; Sallari, Richard C; Siebenthall, Kyle T; Sinnott-Armstrong, Nicholas A; Stevens, Michael; Thurman, Robert E; Wu, Jie; Zhang, Bo; Zhou, Xin; Beaudet, Arthur E; Boyer, Laurie A; De Jager, Philip L; Farnham, Peggy J; Fisher, Susan J; Haussler, David; Jones, Steven J M; Li, Wei; Marra, Marco A; McManus, Michael T; Sunyaev, Shamil; Thomson, James A; Tlsty, Thea D; Tsai, Li-Huei; Wang, Wei; Waterland, Robert A; Zhang, Michael Q; Chadwick, Lisa H; Bernstein, Bradley E; Costello, Joseph F; Ecker, Joseph R; Hirst, Martin; Meissner, Alexander; Milosavljevic, Aleksandar; Ren, Bing; Stamatoyannopoulos, John A; Wang, Ting; Kellis, Manolis |
Nature. |
25693563 |
2015 Feb 19; |
| A novel cortical thickness estimation method based on volumetric Laplace-Beltrami operator and heat kernel. |
Wang, Gang; Zhang, Xiaofeng; Su, Qingtang; Shi, Jie; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative |
Medical image analysis. |
25700360 |
2015 May; |
| D-ribose aids heart failure patients with preserved ejection fraction and diastolic dysfunction: a pilot study. |
Bayram, Melike; St Cyr, J A; Abraham, William T |
Therapeutic advances in cardiovascular disease. |
25701016 |
2015 Jun; |
| Predicting the Naturalistic Course of Major Depressive Disorder Using Clinical and Multimodal Neuroimaging Information: A Multivariate Pattern Recognition Study. |
Schmaal, Lianne; Marquand, Andre F; Rhebergen, Didi; van Tol, Marie-José; Ruhé, Henricus G; van der Wee, Nic J A; Veltman, Dick J; Penninx, Brenda W J H |
Biological psychiatry. |
25702259 |
2015 Aug 15; |
| Regional hippocampal damage in heart failure. |
Woo, Mary A; Ogren, Jennifer A; Abouzeid, Christiane M; Macey, Paul M; Sairafian, Kevin G; Saharan, Priya S; Thompson, Paul M; Fonarow, Gregg C; Hamilton, Michele A; Harper, Ronald M; Kumar, Rajesh |
European journal of heart failure. |
25704495 |
2015 May; |
| Cognitive decline preceding the onset of psychosis in patients with 22q11.2 deletion syndrome. |
Vorstman, Jacob A S; Breetvelt, Elemi J; Duijff, Sasja N; Eliez, Stephan; Schneider, Maude; Jalbrzikowski, Maria; Armando, Marco; Vicari, Stefano; Shashi, Vandana; Hooper, Stephen R; Chow, Eva W C; Fung, Wai Lun Alan; Butcher, Nancy J; Young, Donald A; McDonald-McGinn, Donna M; Vogels, Annick; van Amelsvoort, Therese; Gothelf, Doron; Weinberger, Ronnie; Weizman, Abraham; Klaassen, Petra W J; Koops, Sanne; Kates, Wendy R; Antshel, Kevin M; Simon, Tony J; Ousley, Opal Y; Swillen, Ann; Gur, Raquel E; Bearden, Carrie E; Kahn, René S; Bassett, Anne S; International Consortium on Brain and Behavior in 22q11.2 Deletion Syndrome |
JAMA psychiatry. |
25715178 |
2015 Apr; |
| A Pilot Randomized Trial of Text-Messaging for Symptom Awareness and Diabetes Knowledge in Adolescents With Type 1 Diabetes. |
Han, Yi; Faulkner, Melissa Spezia; Fritz, Heather; Fadoju, Doris; Muir, Andrew; Abowd, Gregory D; Head, Lauren; Arriaga, Rosa I |
Journal of pediatric nursing. |
25720675 |
2015 Nov-Dec; |
| Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model. |
Furlotte, Nicholas A; Eskin, Eleazar |
Genetics. |
25724382 |
2015 May; |
| Genome-Wide Analyses of Working-Memory Ability: A Review. |
Knowles, E E M; Mathias, S R; McKay, D R; Sprooten, E; Blangero, John; Almasy, Laura; Glahn, D C |
Current behavioral neuroscience reports. |
25729637 |
2014 Dec; |
| White matter disruption in moderate/severe pediatric traumatic brain injury: advanced tract-based analyses. |
Dennis, Emily L; Jin, Yan; Villalon-Reina, Julio E; Zhan, Liang; Kernan, Claudia L; Babikian, Talin; Mink, Richard B; Babbitt, Christopher J; Johnson, Jeffrey L; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
NeuroImage. Clinical. |
25737958 |
2015; |
| Heritability of fractional anisotropy in human white matter: a comparison of Human Connectome Project and ENIGMA-DTI data. |
Kochunov, Peter; Jahanshad, Neda; Marcus, Daniel; Winkler, Anderson; Sprooten, Emma; Nichols, Thomas E; Wright, Susan N; Hong, L Elliot; Patel, Binish; Behrens, Timothy; Jbabdi, Saad; Andersson, Jesper; Lenglet, Christophe; Yacoub, Essa; Moeller, Steen; Auerbach, Eddie; Ugurbil, Kamil; Sotiropoulos, Stamatios N; Brouwer, Rachel M; Landman, Bennett; Lemaitre, Hervé; den Braber, Anouk; Zwiers, Marcel P; Ritchie, Stuart; van Hulzen, Kimm; Almasy, Laura; Curran, Joanne; deZubicaray, Greig I; Duggirala, Ravi; Fox, Peter; Martin, Nicholas G; McMahon, Katie L; Mitchell, Braxton; Olvera, Rene L; Peterson, Charles; Starr, John; Sussmann, Jessika; Wardlaw, Joanna; Wright, Margie; Boomsma, Dorret I; Kahn, Rene; de Geus, Eco J C; Williamson, Douglas E; Hariri, Ahmad; van 't Ent, Dennis; Bastin, Mark E; McIntosh, Andrew; Deary, Ian J; Hulshoff Pol, Hilleke E; Blangero, John; Thompson, Paul M; Glahn, David C; Van Essen, David C |
NeuroImage. |
25747917 |
2015 May 01; |
| Medical data transformation using rewriting. |
Ashish, Naveen; Toga, Arthur W |
Frontiers in neuroinformatics. |
25750622 |
2015; |
| Contributions of Feature Binding During Encoding and Functional Connectivity of the Medial Temporal Lobe Structures to Episodic Memory Deficits Across the Prodromal and First-Episode Phases of Schizophrenia. |
Haut, Kristen M; van Erp, Theo G M; Knowlton, Barbara; Bearden, Carrie E; Subotnik, Kenneth; Ventura, Joseph; Nuechterlein, Keith H; Cannon, Tyrone D |
Clinical psychological science : a journal of the Association for Psychological Science. |
25750836 |
2015 Mar; |
| Spatial and temporal dynamics of the cardiac mitochondrial proteome. |
Lau, Edward; Huang, Derrick; Cao, Quan; Dincer, T Umut; Black, Caitie M; Lin, Amanda J; Lee, Jessica M; Wang, Ding; Liem, David A; Lam, Maggie P Y; Ping, Peipei |
Expert review of proteomics. |
25752359 |
2015 Apr; |
| Shared genetic variance between obesity and white matter integrity in Mexican Americans. |
Spieker, Elena A; Kochunov, Peter; Rowland, Laura M; Sprooten, Emma; Winkler, Anderson M; Olvera, Rene L; Almasy, Laura; Duggirala, Ravi; Fox, Peter T; Blangero, John; Glahn, David C; Curran, Joanne E |
Frontiers in genetics. |
25763009 |
2015; |
| Cortical thickness and brain volumetric analysis in body dysmorphic disorder. |
Madsen, Sarah K; Zai, Alex; Pirnia, Tara; Arienzo, Donatello; Zhan, Liang; Moody, Teena D; Thompson, Paul M; Feusner, Jamie D |
Psychiatry research. |
25797401 |
2015 Apr 30; |
| Assessing the Availability of Users to Engage in Just-in-Time Intervention in the Natural Environment. |
Sarker, Hillol; Sharmin, Moushumi; Ali, Amin Ahsan; Rahman, Md Mahbubur; Bari, Rummana; Hossain, Syed Monowar; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
25798455 |
2014; |
| Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified. |
Marinov, Georgi K; Wang, Jie; Handler, Dominik; Wold, Barbara J; Weng, Zhiping; Hannon, Gregory J; Aravin, Alexei A; Zamore, Phillip D; Brennecke, Julius; Toth, Katalin Fejes |
Developmental cell. |
25805138 |
2015 Mar 23; |
| Fast and powerful heritability inference for family-based neuroimaging studies. |
Ganjgahi, Habib; Winkler, Anderson M; Glahn, David C; Blangero, John; Kochunov, Peter; Nichols, Thomas E |
NeuroImage. |
25812717 |
2015 Jul 15; |
| Harnessing the heart of big data. |
Scruggs, Sarah B; Watson, Karol; Su, Andrew I; Hermjakob, Henning; Yates 3rd, John R; Lindsey, Merry L; Ping, Peipei |
Circulation research. |
25814682 |
2015 Mar 27; |
| Are We There Yet? Feasibility of Continuous Stress Assessment via Wireless Physiological Sensors. |
Rahman, Mahbubur; Bari, Rummana; Ali, Amin Ahsan; Sharmin, Moushumi; Raij, Andrew; Hovsepian, Karen; Hossain, Syed Monowar; Ertin, Emre; Kennedy, Ashley; Epstein, David H; Preston, Kenzie L; Jobes, Michelle; Beck, J Gayle; Kedia, Satish; Ward, Kenneth D; al'Absi, Mustafa; Kumar, Santosh |
ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. |
25821861 |
2014; |
| Subcortical shape and volume abnormalities in an elderly HIV+ cohort. |
Wade, Benjamin S C; Valcour, Victor; Busovaca, Edgar; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Wang, Yalin; Thompson, Paul M |
Proceedings of SPIE--the International Society for Optical Engineering. |
25844123 |
2015 Mar 17; |
| EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments. |
Leng, Ning; Li, Yuan; McIntosh, Brian E; Nguyen, Bao Kim; Duffin, Bret; Tian, Shulan; Thomson, James A; Dewey, Colin N; Stewart, Ron; Kendziorski, Christina |
Bioinformatics (Oxford, England). |
25847007 |
2015 Aug 15; |
| Communication of brain network core connections altered in behavioral variant frontotemporal dementia but possibly preserved in early-onset Alzheimer's disease. |
Daianu, Madelaine; Jahanshad, Neda; Mendez, Mario F; Bartzokis, George; Jimenez, Elvira E; Thompson, Paul M |
Proceedings of SPIE--the International Society for Optical Engineering. |
25848494 |
2015 Mar 20; |
| 7T Multi-shell Hybrid Diffusion Imaging (HYDI) for Mapping Brain Connectivity in Mice. |
Daianu, Madelaine; Jahanshad, Neda; Villalon-Reina, Julio E; Prasad, Gautam; Jacobs, Russell E; Barnes, Samuel; Zlokovic, Berislav V; Montagne, Axel; Thompson, Paul M |
Proceedings of SPIE--the International Society for Optical Engineering. |
25859293 |
2015 Mar 20; |
| Towards Scalable Graph Computation on Mobile Devices. |
Chen, Yiqi; Lin, Zhiyuan; Pienta, Robert; Kahng, Minsuk; Chau, Duen Horng |
Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data. |
25859564 |
2014 Oct; |
| MAGE: Matching Approximate Patterns in Richly-Attributed Graphs. |
Pienta, Robert; Tamersoy, Acar; Tong, Hanghang; Chau, Duen Horng |
Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data. |
25859565 |
2014 Oct; |
| Inferring Meal Eating Activities in Real World Settings from Ambient Sounds: A Feasibility Study. |
Thomaz, Edison; Zhang, Cheng; Essa, Irfan; Abowd, Gregory D |
IUI. International Conference on Intelligent User Interfaces. |
25859566 |
2015 Mar-Apr; |
| Interactive Querying over Large Network Data: Scalability, Visualization, and Interaction Design. |
Pienta, Robert; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen Horng |
IUI. International Conference on Intelligent User Interfaces. |
25859567 |
2015 Mar-Apr; |
| MMap: Fast Billion-Scale Graph Computation on a PC via Memory Mapping. |
Lin, Zhiyuan; Kahng, Minsuk; Sabrin, Kaeser Md; Chau, Duen Horng Polo; Lee, Ho; Kang, U |
Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data. |
25866846 |
2014 Oct; |
| Estimating Drivers' Stress from GPS Traces. |
Vhaduri, Sudip; Ali, Amin; Sharmin, Moushumi; Hovsepian, Karen; Kumar, Santosh |
Proceedings : AutomotiveUI 2014 : 6th International Conference on Automotive User Interfaces and Interactive Vehicular Applications : September 17-19, 2014, Seattle, Washington, USA. International Conference on Automotive User Interface.... |
25866847 |
2014 Sep 17; |
| Alterations in frontal white matter neurochemistry and microstructure in schizophrenia: implications for neuroinflammation. |
Chiappelli, J; Hong, L E; Wijtenburg, S A; Du, X; Gaston, F; Kochunov, P; Rowland, L M |
Translational psychiatry. |
25871973 |
2015 Apr 14; |
| Crowdsourcing in biomedicine: challenges and opportunities. |
Khare, Ritu; Good, Benjamin M; Leaman, Robert; Su, Andrew I; Lu, Zhiyong |
Briefings in bioinformatics. |
25888696 |
2016 Jan; |
| Novel Neuroimaging Methods to Understand How HIV Affects the Brain. |
Thompson, Paul M; Jahanshad, Neda |
Current HIV/AIDS reports. |
25902966 |
2015 Jun; |
| Structured learning for spatial information extraction from biomedical text: bacteria biotopes. |
Kordjamshidi, Parisa; Roth, Dan; Moens, Marie-Francine |
BMC bioinformatics. |
25909637 |
2015; |
| A Transformation Similarity Constraint for Groupwise Nonlinear Registration in Longitudinal Neuro Imaging Studies. |
Fleishman, Greg M; Gutman, Boris A; Fletcher, P Thomas; Thompson, Paul |
Proceedings of SPIE--the International Society for Optical Engineering. |
25914796 |
2015 Mar 20; |
| Multiset Statistics for Gene Set Analysis. |
Newton, Michael A; Wang, Zhishi |
Annual review of statistics and its application. |
25914887 |
2015 Apr; |
| Toward a complete dataset of drug-drug interaction information from publicly available sources. |
Ayvaz, Serkan; Horn, John; Hassanzadeh, Oktie; Zhu, Qian; Stan, Johann; Tatonetti, Nicholas P; Vilar, Santiago; Brochhausen, Mathias; Samwald, Matthias; Rastegar-Mojarad, Majid; Dumontier, Michel; Boyce, Richard D |
Journal of biomedical informatics. |
25917055 |
2015 Jun; |
| Continuous in-the-field measurement of heart rate: Correlates of drug use, craving, stress, and mood in polydrug users. |
Kennedy, Ashley P; Epstein, David H; Jobes, Michelle L; Agage, Daniel; Tyburski, Matthew; Phillips, Karran A; Ali, Amin Ahsan; Bari, Rummana; Hossain, Syed Monowar; Hovsepian, Karen; Rahman, Md Mahbubur; Ertin, Emre; Kumar, Santosh; Preston, Kenzie L |
Drug and alcohol dependence. |
25920802 |
2015 Jun 01; |
| Recombination Analysis of Herpes Simplex Virus 1 Reveals a Bias toward GC Content and the Inverted Repeat Regions. |
Lee, Kyubin; Kolb, Aaron W; Sverchkov, Yuriy; Cuellar, Jacqueline A; Craven, Mark; Brandt, Curtis R |
Journal of virology. |
25926637 |
2015 Jul; |
| Comparison of nine tractography algorithms for detecting abnormal structural brain networks in Alzheimer's disease. |
Zhan, Liang; Zhou, Jiayu; Wang, Yalin; Jin, Yan; Jahanshad, Neda; Prasad, Gautam; Nir, Talia M; Leonardo, Cassandra D; Ye, Jieping; Thompson, Paul M; For The Alzheimer's Disease Neuroimaging Initiative |
Frontiers in aging neuroscience. |
25926791 |
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| Muscle LIM Protein: Master regulator of cardiac and skeletal muscle functions. |
Vafiadaki, Elizabeth; Arvanitis, Demetrios A; Sanoudou, Despina |
Gene. |
25936993 |
2015 Jul 15; |
| Structural Brain Changes in Early-Onset Alzheimer's Disease Subjects Using the LONI Pipeline Environment. |
Moon, Seok Woo; Dinov, Ivo D; Hobel, Sam; Zamanyan, Alen; Choi, Young Chil; Shi, Ran; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging Initiative |
Journal of neuroimaging : official journal of the American Society of Neuroimaging. |
25940587 |
2015 Sep; |
| Deviant white matter structure in adults with attention-deficit/hyperactivity disorder points to aberrant myelination and affects neuropsychological performance. |
Onnink, A Marten H; Zwiers, Marcel P; Hoogman, Martine; Mostert, Jeanette C; Dammers, Janneke; Kan, Cornelis C; Vasquez, Alejandro Arias; Schene, Aart H; Buitelaar, Jan; Franke, Barbara |
Progress in neuro-psychopharmacology & biological psychiatry. |
25956761 |
2015 Dec 03; |
| Human paraoxonase-1 (PON1): Gene structure and expression, promiscuous activities and multiple physiological roles. |
Mackness, Mike; Mackness, Bharti |
Gene. |
25965560 |
2015 Aug 1; |
| The digital phenotype. |
Jain, Sachin H; Powers, Brian W; Hawkins, Jared B; Brownstein, John S |
Nature biotechnology. |
25965751 |
2015 May; |
| The Image and Data Archive at the Laboratory of Neuro Imaging. |
Crawford, Karen L; Neu, Scott C; Toga, Arthur W |
NeuroImage. |
25982516 |
2015 May 14; |
| Association of Protein Phosphatase PPM1G With Alcohol Use Disorder and Brain Activity During Behavioral Control in a Genome-Wide Methylation Analysis. |
Ruggeri, Barbara; Nymberg, Charlotte; Vuoksimaa, Eero; Lourdusamy, Anbarasu; Wong, Cybele P; Carvalho, Fabiana M; Jia, Tianye; Cattrell, Anna; Macare, Christine; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Fauth-Bühler, Mira; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Pausova, Zdenka; Paus, Tomá?; Rietschel, Marcella; Robbins, Trevor; Smolka, Michael N; Spanagel, Rainer; Bakalkin, Georgy; Mill, Jonathan; Sommer, Wolfgang H; Rose, Richard J; Yan, Jia; Aliev, Fazil; Dick, Danielle; Kaprio, Jaakko; Desrivières, Sylvane; Schumann, Gunter; IMAGEN Consortium |
The American journal of psychiatry. |
25982659 |
2015 Jun; |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection. |
Ewing, Adam D; Houlahan, Kathleen E; Hu, Yin; Ellrott, Kyle; Caloian, Cristian; Yamaguchi, Takafumi N; Bare, J Christopher; P'ng, Christine; Waggott, Daryl; Sabelnykova, Veronica Y; ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants; Kellen, Michael R; Norman, Thea C; Haussler, David; Friend, Stephen H; Stolovitzky, Gustavo; Margolin, Adam A; Stuart, Joshua M; Boutros, Paul C |
Nature methods. |
25984700 |
2015 Jul; |
| Trans-species learning of cellular signaling systems with bimodal deep belief networks. |
Chen, Lujia; Cai, Chunhui; Chen, Vicky; Lu, Xinghua |
Bioinformatics (Oxford, England). |
25995230 |
2015 Sep 15; |
| From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics. |
Lavallée-Adam, Mathieu; Park, Sung Kyu Robin; Martínez-Bartolomé, Salvador; He, Lin; Yates 3rd, John R |
Journal of the American Society for Mass Spectrometry. |
26002791 |
2015 Nov; |
| GLO-STIX: Graph-Level Operations for Specifying Techniques and Interactive eXploration. |
Stolper, Charles D; Kahng, Minsuk; Lin, Zhiyuan; Foerster, Florian; Goel, Aakash; Stasko, John; Chau, Duen Horng |
IEEE transactions on visualization and computer graphics. |
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2014 Dec 31; |
| Multi-resolution statistical analysis of brain connectivity graphs in preclinical Alzheimer's disease. |
Kim, Won Hwa; Adluru, Nagesh; Chung, Moo K; Okonkwo, Ozioma C; Johnson, Sterling C; B Bendlin, Barbara; Singh, Vikas |
NeuroImage. |
26025289 |
2015 Sep; |
| Accurate and fast multiple-testing correction in eQTL studies. |
Sul, Jae Hoon; Raj, Towfique; de Jong, Simone; de Bakker, Paul I W; Raychaudhuri, Soumya; Ophoff, Roel A; Stranger, Barbara E; Eskin, Eleazar; Han, Buhm |
American journal of human genetics. |
26027500 |
2015 Jun 4; |
| Therapeutically Targetable ALK Mutations in Leukemia. |
Maxson, Julia E; Davare, Monika A; Luty, Samuel B; Eide, Christopher A; Chang, Bill H; Loriaux, Marc M; Tognon, Cristina E; Bottomly, Daniel; Wilmot, Beth; McWeeney, Shannon K; Druker, Brian J; Tyner, Jeffrey W |
Cancer research. |
26032424 |
2015 Jun 01; |
| Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium. |
van Erp, T G M; Hibar, D P; Rasmussen, J M; Glahn, D C; Pearlson, G D; Andreassen, O A; Agartz, I; Westlye, L T; Haukvik, U K; Dale, A M; Melle, I; Hartberg, C B; Gruber, O; Kraemer, B; Zilles, D; Donohoe, G; Kelly, S; McDonald, C; Morris, D W; Cannon, D M; Corvin, A; Machielsen, M W J; Koenders, L; de Haan, L; Veltman, D J; Satterthwaite, T D; Wolf, D H; Gur, R C; Gur, R E; Potkin, S G; Mathalon, D H; Mueller, B A; Preda, A; Macciardi, F; Ehrlich, S; Walton, E; Hass, J; Calhoun, V D; Bockholt, H J; Sponheim, S R; Shoemaker, J M; van Haren, N E M; Hulshoff Pol, H E; Pol, H E H; Ophoff, R A; Kahn, R S; Roiz-Santiañez, R; Crespo-Facorro, B; Wang, L; Alpert, K I; Jönsson, E G; Dimitrova, R; Bois, C; Whalley, H C; McIntosh, A M; Lawrie, S M; Hashimoto, R; Thompson, P M; Turner, J A |
Molecular psychiatry. |
26033243 |
2016 Apr; |
| Rich club analysis in the Alzheimer's disease connectome reveals a relatively undisturbed structural core network. |
Daianu, Madelaine; Jahanshad, Neda; Nir, Talia M; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Human brain mapping. |
26037224 |
2015 Aug; |
| Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research. |
Chen, Bin; Sirota, Marina; Fan-Minogue, Hua; Hadley, Dexter; Butte, Atul J |
BMC medical genomics. |
26043652 |
2015; |
| Sharing data in the global alzheimer's association interactive network. |
Neu, Scott C; Crawford, Karen L; Toga, Arthur W |
NeuroImage. |
26049147 |
2015 Jun 4; |
| Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. |
Cancer Genome Atlas Research Network (see original citation for additional authors) |
The New England journal of medicine. |
26061751 |
2015 Jun 25; |
| BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks. |
Richiardi, Jonas; Altmann, Andre; Milazzo, Anna-Clare; Chang, Catie; Chakravarty, M Mallar; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia; Fauth-Bühler, Mira; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Lemaître, Hervé; Mann, Karl F; Martinot, Jean-Luc; Nees, Frauke; Paus, Tomá?; Pausova, Zdenka; Rietschel, Marcella; Robbins, Trevor W; Smolka, Michael N; Spanagel, Rainer; Ströhle, Andreas; Schumann, Gunter; Hawrylycz, Mike; Poline, Jean-Baptiste; Greicius, Michael D; IMAGEN consortium |
Science (New York, N.Y.). |
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2015 Jun 12; |
| Identification of causal genes for complex traits. |
Hormozdiari, Farhad; Kichaev, Gleb; Yang, Wen-Yun; Pasaniuc, Bogdan; Eskin, Eleazar |
Bioinformatics (Oxford, England). |
26072484 |
2015 Jun 15; |
| Exploiting ontology graph for predicting sparsely annotated gene function. |
Wang, Sheng; Cho, Hyunghoon; Zhai, ChengXiang; Berger, Bonnie; Peng, Jian |
Bioinformatics (Oxford, England). |
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2015 Jun 15; |
| Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome. |
Hewitt, Kyle J; Kim, Duk Hyoung; Devadas, Prithvia; Prathibha, Rajalekshmi; Zuo, Chandler; Sanalkumar, Rajendran; Johnson, Kirby D; Kang, Yoon-A; Kim, Jin-Soo; Dewey, Colin N; Keles, Sunduz; Bresnick, Emery H |
Molecular cell. |
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2015 Jul 2; |
| Functions of myosin light chain-2 (MYL2) in cardiac muscle and disease. |
Sheikh, Farah; Lyon, Robert C; Chen, Ju |
Gene. |
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2015 Sep 10; |
| Atrial natriuretic peptide in cardiovascular biology and disease (NPPA). |
Song, Wei; Wang, Hao; Wu, Qingyu |
Gene. |
26074089 |
2015 Sep 10; |
| Edge-Centered DTI Connectivity Analysis: Application to Schizophrenia. |
Herskovits, Edward H; Hong, L Elliot; Kochunov, Peter; Sampath, Hemalatha; Chen, Rong |
Neuroinformatics. |
26078102 |
2015 Oct; |
| Brain Imaging and Neurodevelopment in HIV-uninfected Thai Children Born to HIV-infected Mothers. |
Jahanshad, Neda; Couture, Marie-Claude; Prasitsuebsai, Wasana; Nir, Talia M; Aurpibul, Linda; Thompson, Paul M; Pruksakaew, Kanchana; Lerdlum, Sukalaya; Visrutaratna, Pannee; Catella, Stephanie; Desai, Akash; Kerr, Stephen J; Puthanakit, Thanyawee; Paul, Robert; Ananworanich, Jintanat; Valcour, Victor G; SEARCH 012 and PREDICT Study Groups |
The Pediatric infectious disease journal. |
26090574 |
2015 Sep; |
| atSNP: transcription factor binding affinity testing for regulatory SNP detection. |
Zuo, Chandler; Shin, Sunyoung; Kele?, Sündüz |
Bioinformatics (Oxford, England). |
26092860 |
2015 Oct 15; |
| Personalized Modeling for Prediction with Decision-Path Models. |
Visweswaran, Shyam; Ferreira, Antonio; Ribeiro, Guilherme A; Oliveira, Alexandre C; Cooper, Gregory F |
PloS one. |
26098570 |
2015; |
| Perfusion shift from white to gray matter may account for processing speed deficits in schizophrenia. |
Wright, Susan N; Hong, L Elliot; Winkler, Anderson M; Chiappelli, Joshua; Nugent, Katie; Muellerklein, Florian; Du, Xioming; Rowland, Laura M; Wang, Danny J J; Kochunov, Peter |
Human brain mapping. |
26108347 |
2015 Oct; |
| The center for expanded data annotation and retrieval. |
Musen, Mark A; Bean, Carol A; Cheung, Kei-Hoi; Dumontier, Michel; Durante, Kim A; Gevaert, Olivier; Gonzalez-Beltran, Alejandra; Khatri, Purvesh; Kleinstein, Steven H; O'Connor, Martin J; Pouliot, Yannick; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Wiser, Jeffrey A; CEDAR team |
Journal of the American Medical Informatics Association : JAMIA. |
26112029 |
2015 Nov; |
| Subcortical brain alterations in major depressive disorder: findings from the ENIGMA Major Depressive Disorder working group. |
Schmaal, L; Veltman, D J; van Erp, T G M; Sämann, P G; Frodl, T; Jahanshad, N; Loehrer, E; Tiemeier, H; Hofman, A; Niessen, W J; Vernooij, M W; Ikram, M A; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Hoehn, D; Czisch, M; Lagopoulos, J; Hatton, S N; Hickie, I B; Goya-Maldonado, R; Krämer, B; Gruber, O; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Martin, N G; Gillespie, N A; Wright, M J; Hall, G B; MacQueen, G M; Frey, E M; Carballedo, A; van Velzen, L S; van Tol, M J; van der Wee, N J; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Nickson, T; McIntosh, A M; Papmeyer, M; Whalley, H C; Sussmann, J E; Godlewska, B R; Cowen, P J; Fischer, F H; Rose, M; Penninx, B W J H; Thompson, P M; Hibar, D P |
Molecular psychiatry. |
26122586 |
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| Development of the human fetal hippocampal formation during early second trimester. |
Ge, Xinting; Shi, Yonggang; Li, Junning; Zhang, Zhonghe; Lin, Xiangtao; Zhan, Jinfeng; Ge, Haitao; Xu, Junhai; Yu, Qiaowen; Leng, Yuan; Teng, Gaojun; Feng, Lei; Meng, Haiwei; Tang, Yuchun; Zang, Fengchao; Toga, Arthur W; Liu, Shuwei |
NeuroImage. |
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| The KCNE2 K? channel regulatory subunit: Ubiquitous influence, complex pathobiology. |
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Gene. |
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2015 Sep 15; |
| The center for causal discovery of biomedical knowledge from big data. |
Cooper, Gregory F; Bahar, Ivet; Becich, Michael J; Benos, Panayiotis V; Berg, Jeremy; Espino, Jeremy U; Glymour, Clark; Jacobson, Rebecca Crowley; Kienholz, Michelle; Lee, Adrian V; Lu, Xinghua; Scheines, Richard; Center for Causal Discovery team |
Journal of the American Medical Informatics Association : JAMIA. |
26138794 |
2015 Nov; |
| State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet. |
Deutsch, Eric W; Sun, Zhi; Campbell, David; Kusebauch, Ulrike; Chu, Caroline S; Mendoza, Luis; Shteynberg, David; Omenn, Gilbert S; Moritz, Robert L |
Journal of proteome research. |
26139527 |
2015 Sep 4; |
| Big Data: Astronomical or Genomical? |
Stephens, Zachary D; Lee, Skylar Y; Faghri, Faraz; Campbell, Roy H; Zhai, Chengxiang; Efron, Miles J; Iyer, Ravishankar; Schatz, Michael C; Sinha, Saurabh; Robinson, Gene E |
PLoS biology. |
26151137 |
2015 Jul; |
| Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification. |
Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Beavis, Ronald C; Nesvizhskii, Alexey I; Deutsch, Eric W |
Journal of proteome research. |
26155816 |
2015 Sep 4; |
| Prioritizing Proteomics Assay Development for Clinical Translation. |
Lam, Maggie P Y; Venkatraman, Vidya; Cao, Quan; Wang, Ding; Dincer, T Umut; Lau, Edward; Su, Andrew I; Xing, Yi; Ge, Junbo; Ping, Peipei; Van Eyk, Jennifer E |
Journal of the American College of Cardiology. |
26160638 |
2015 Jul 14; |
| Rich club network analysis shows distinct patterns of disruption in frontotemporal dementia and Alzheimer's disease. |
Daianu, Madelaine; Jahanshad, Neda; Villalon-Reina, Julio E; Mendez, Mario F; Bartzokis, George; Jimenez, Elvira E; Joshi, Aditi; Barsuglia, Joseph; Thompson, Paul M |
Mathematics and visualization. |
26161050 |
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| Achieving human and machine accessibility of cited data in scholarly publications. |
Starr, Joan; Castro, Eleni; Crosas, Mercè; Dumontier, Michel; Downs, Robert R; Duerr, Ruth; Haak, Laurel L; Haendel, Melissa; Herman, Ivan; Hodson, Simon; Hourclé, Joe; Kratz, John Ernest; Lin, Jennifer; Nielsen, Lars Holm; Nurnberger, Amy; Proell, Stefan; Rauber, Andreas; Sacchi, Simone; Smith, Arthur; Taylor, Mike; Clark, Tim |
PeerJ. Computer science. |
26167542 |
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| Rsu1 regulates ethanol consumption in Drosophila and humans. |
Ojelade, Shamsideen A; Jia, Tianye; Rodan, Aylin R; Chenyang, Tao; Kadrmas, Julie L; Cattrell, Anna; Ruggeri, Barbara; Charoen, Pimphen; Lemaitre, Hervé; Banaschewski, Tobias; Büchel, Christian; Bokde, Arun L W; Carvalho, Fabiana; Conrod, Patricia J; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Lubbe, Steven; Martinot, Jean-Luc; Paus, Tomás; Smolka, Michael N; Spanagel, Rainer; O'Reilly, Paul F; Laitinen, Jaana; Veijola, Juha M; Feng, Jianfeng; Desrivières, Sylvane; Jarvelin, Marjo-Riitta; IMAGEN Consortium; Schumann, Gunter; Rothenfluh, Adrian |
Proceedings of the National Academy of Sciences of the United States of America. |
26170296 |
2015 Jul 28; |
| ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity. |
Xu, T; Park, S K; Venable, J D; Wohlschlegel, J A; Diedrich, J K; Cociorva, D; Lu, B; Liao, L; Hewel, J; Han, X; Wong, C C L; Fonslow, B; Delahunty, C; Gao, Y; Shah, H; Yates 3rd, J R |
Journal of proteomics. |
26171723 |
2015 Nov 03; |
| The NIH BD2K center for big data in translational genomics. |
Paten, Benedict; Diekhans, Mark; Druker, Brian J; Friend, Stephen; Guinney, Justin; Gassner, Nadine; Guttman, Mitchell; Kent, W James; Mantey, Patrick; Margolin, Adam A; Massie, Matt; Novak, Adam M; Nothaft, Frank; Pachter, Lior; Patterson, David; Smuga-Otto, Maciej; Stuart, Joshua M; Van't Veer, Laura; Wold, Barbara; Haussler, David |
Journal of the American Medical Informatics Association : JAMIA. |
26174866 |
2015 Nov; |
| Callosal Function in Pediatric Traumatic Brain Injury Linked to Disrupted White Matter Integrity. |
Dennis, Emily L; Ellis, Monica U; Marion, Sarah D; Jin, Yan; Moran, Lisa; Olsen, Alexander; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
The Journal of neuroscience : the official journal of the Society for Neuroscience. |
26180196 |
2015 Jul 15; |
| Cortisol Reactivity to Stress and Its Association With White Matter Integrity in Adults With Schizophrenia. |
Nugent, Katie L; Chiappelli, Joshua; Sampath, Hemalatha; Rowland, Laura M; Thangavelu, Kavita; Davis, Beshaun; Du, Xiaoming; Muellerklein, Florian; Daughters, Stacey; Kochunov, Peter; Hong, L Elliot |
Psychosomatic medicine. |
26186431 |
2015 Sep; |
| The Alzheimer's Disease Neuroimaging Initiative informatics core: A decade in review. |
Toga, Arthur W; Crawford, Karen L |
Alzheimer's & dementia : the journal of the Alzheimer's Association. |
26194316 |
2015 Jul; |
| Assessing incremental value of biomarkers with multi-phase nested case-control studies. |
Zhou, Qian M; Zheng, Yingye; Chibnik, Lori B; Karlson, Elizabeth W; Cai, Tianxi |
Biometrics. |
26195245 |
2015 Dec; |
| Big biomedical data as the key resource for discovery science. |
Toga, Arthur W; Foster, Ian; Kesselman, Carl; Madduri, Ravi; Chard, Kyle; Deutsch, Eric W; Price, Nathan D; Glusman, Gustavo; Heavner, Benjamin D; Dinov, Ivo D; Ames, Joseph; Van Horn, John; Kramer, Roger; Hood, Leroy |
Journal of the American Medical Informatics Association : JAMIA. |
26198305 |
2015 Nov; |
| App-enabled trial participation: Tectonic shift or tepid rumble? |
Friend, Stephen H |
Science translational medicine. |
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2015 Jul 22; |
| KnowEnG: a knowledge engine for genomics. |
Sinha, Saurabh; Song, Jun; Weinshilboum, Richard; Jongeneel, Victor; Han, Jiawei |
Journal of the American Medical Informatics Association : JAMIA. |
26205246 |
2015 Nov; |
| The FHL2 regulation in the transcriptional circuitry of human cancers. |
Cao, Cyanne Ye; Mok, Simon Wing-Fai; Cheng, Vincent Wing-Sang; Tsui, Stephen Kwok-Wing |
Gene. |
26211626 |
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| Controlling False Discovery Rate in Signal Space for Transformation-Invariant Thresholding of Statistical Maps. |
Li, Junning; Shi, Yonggang; Toga, Arthur W |
Information processing in medical imaging : proceedings of the ... conference. |
26213450 |
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| Simultaneous Longitudinal Registration with Group-Wise Similarity Prior. |
Fleishman, Greg M; Gutman, Boris A; Fletcher, P Thomas; Thompson, Paul M |
Information processing in medical imaging : proceedings of the ... conference. |
26213451 |
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| Canonical, stable, general mapping using context schemes. |
Novak, Adam M; Rosen, Yohei; Haussler, David; Paten, Benedict |
Bioinformatics (Oxford, England). |
26220960 |
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| Striatal activity and reduced white matter increase frontal activity in youths with family histories of alcohol and other substance-use disorders performing a go/no-go task. |
Acheson, Ashley; Tagamets, Malle A; Winkler, Anderson; Rowland, Laura M; Mathias, Charles W; Wright, Susan N; Hong, L Elliot; Kochunov, Peter; Dougherty, Donald M |
Brain and behavior. |
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| A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes. |
Gutman, Boris A; Fletcher, P Thomas; Cardoso, M Jorge; Fleishman, Greg M; Lorenzi, Marco; Thompson, Paul M; Ourselin, Sebastien |
Information processing in medical imaging : proceedings of the ... conference. |
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| Heritability of the network architecture of intrinsic brain functional connectivity. |
Sinclair, Benjamin; Hansell, Narelle K; Blokland, Gabriëlla A M; Martin, Nicholas G; Thompson, Paul M; Breakspear, Michael; de Zubicaray, Greig I; Wright, Margaret J; McMahon, Katie L |
NeuroImage. |
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| Structure and function of cardiac troponin C (TNNC1): Implications for heart failure, cardiomyopathies, and troponin modulating drugs. |
Li, Monica X; Hwang, Peter M |
Gene. |
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2015 Oct 25; |
| External validation of a publicly available computer assisted diagnostic tool for mammographic mass lesions with two high prevalence research datasets. |
Benndorf, Matthias; Burnside, Elizabeth S; Herda, Christoph; Langer, Mathias; Kotter, Elmar |
Medical physics. |
26233224 |
2015 Aug; |
| A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes. |
Gutman, Boris; Fletcher, Thomas; Cardoso, M Jorge; Fleishman, Greg; Lorenzi, Marco; Thompson, Paul; Ourselin, Sebastien |
Information processing in medical imaging : proceedings of the ... conference. |
26236122 |
2015 Jul; |
| SOCR data dashboard: an integrated big data archive mashing medicare, labor, census and econometric information. |
Husain, Syed S; Kalinin, Alexandr; Truong, Anh; Dinov, Ivo D |
Journal of big data. |
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| Smartphone applications to support weight loss: current perspectives. |
Pellegrini, Christine A; Pfammatter, Angela F; Conroy, David E; Spring, Bonnie |
Advanced health care technologies. |
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2015 Jul; |
| ERC analysis: web-based inference of gene function via evolutionary rate covariation. |
Wolfe, Nicholas W; Clark, Nathan L |
Bioinformatics (Oxford, England). |
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| Adaptability of protein structures to enable functional interactions and evolutionary implications. |
Haliloglu, Turkan; Bahar, Ivet |
Current opinion in structural biology. |
26254902 |
2015 Dec; |
| Boosting brain connectome classification accuracy in Alzheimer's disease using higher-order singular value decomposition. |
Zhan, Liang; Liu, Yashu; Wang, Yalin; Zhou, Jiayu; Jahanshad, Neda; Ye, Jieping; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative (ADNI) |
Frontiers in neuroscience. |
26257601 |
2015; |
| Simulation-Based Design for Wearable Robotic Systems: An Optimization Framework for Enhancing a Standing Long Jump. |
Ong, Carmichael F; Hicks, Jennifer L; Delp, Scott L |
IEEE transactions on bio-medical engineering. |
26258930 |
2016 05; |
| The circular relationship between matrix metalloproteinase-9 and inflammation following myocardial infarction. |
Deleon-Pennell, Kristine Y; Altara, Raffaele; Yabluchanskiy, Andriy; Modesti, Alessandra; Lindsey, Merry L |
IUBMB life. |
26269290 |
2015 Aug; |
| The mobilize center: an NIH big data to knowledge center to advance human movement research and improve mobility. |
Ku, Joy P; Hicks, Jennifer L; Hastie, Trevor; Leskovec, Jure; Ré, Christopher; Delp, Scott L |
Journal of the American Medical Informatics Association : JAMIA. |
26272077 |
2015 Nov; |
| Tissue Inhibitor of Metalloproteinase-1: Actions beyond Matrix Metalloproteinase Inhibition. |
Lindsey, Merry L; Yabluchanskiy, Andriy; Ma, Yonggang |
Cardiology. |
26279068 |
2015; |
| Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium. |
van Erp, T G M; Hibar, D P; Rasmussen, J M; Glahn, D C; Pearlson, G D; Andreassen, O A; Agartz, I; Westlye, L T; Haukvik, U K; Dale, A M; Melle, I; Hartberg, C B; Gruber, O; Kraemer, B; Zilles, D; Donohoe, G; Kelly, S; McDonald, C; Morris, D W; Cannon, D M; Corvin, A; Machielsen, M W J; Koenders, L; de Haan, L; Veltman, D J; Satterthwaite, T D; Wolf, D H; Gur, R C; Gur, R E; Potkin, S G; Mathalon, D H; Mueller, B A; Preda, A; Macciardi, F; Ehrlich, S; Walton, E; Hass, J; Calhoun, V D; Bockholt, H J; Sponheim, S R; Shoemaker, J M; van Haren, N E M; Pol, H E H; Ophoff, R A; Kahn, R S; Roiz-Santiañez, R; Crespo-Facorro, B; Wang, L; Alpert, K I; Jönsson, E G; Dimitrova, R; Bois, C; Whalley, H C; McIntosh, A M; Lawrie, S M; Hashimoto, R; Thompson, P M; Turner, J A |
Molecular psychiatry. |
26283641 |
2016 Apr; |
| Pivotal role of computers and software in mass spectrometry - SEQUEST and 20 years of tandem MS database searching. |
Yates 3rd, John R |
Journal of the American Society for Mass Spectrometry. |
26286455 |
2015 Nov; |
| The Matchmaker Exchange: a platform for rare disease gene discovery. |
Philippakis, Anthony A; Azzariti, Danielle R; Beltran, Sergi; Brookes, Anthony J; Brownstein, Catherine A; Brudno, Michael; Brunner, Han G; Buske, Orion J; Carey, Knox; Doll, Cassie; Dumitriu, Sergiu; Dyke, Stephanie O M; den Dunnen, Johan T; Firth, Helen V; Gibbs, Richard A; Girdea, Marta; Gonzalez, Michael; Haendel, Melissa A; Hamosh, Ada; Holm, Ingrid A; Huang, Lijia; Hurles, Matthew E; Hutton, Ben; Krier, Joel B; Misyura, Andriy; Mungall, Christopher J; Paschall, Justin; Paten, Benedict; Robinson, Peter N; Schiettecatte, François; Sobreira, Nara L; Swaminathan, Ganesh J; Taschner, Peter E; Terry, Sharon F; Washington, Nicole L; Züchner, Stephan; Boycott, Kym M; Rehm, Heidi L |
Human mutation. |
26295439 |
2015 Oct; |
| Leveraging Interaction between Genetic Variants and Mammographic Findings for Personalized Breast Cancer Diagnosis. |
Liu, Jie; Wu, Yirong; Ong, Irene; Page, David; Peissig, Peggy; McCarty, Catherine; Onitilo, Adedayo A; Burnside, Elizabeth |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
26306250 |
2015; |
| Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets. |
Lu, Songjian; Lu, Kevin N; Cheng, Shi-Yuan; Hu, Bo; Ma, Xiaojun; Nystrom, Nicholas; Lu, Xinghua |
PLoS computational biology. |
26317392 |
2015 Aug; |
| The Global Alzheimer's Association Interactive Network. |
Toga, Arthur W; Neu, Scott C; Bhatt, Priya; Crawford, Karen L; Ashish, Naveen |
Alzheimer's & dementia : the journal of the Alzheimer's Association. |
26318022 |
2016 Jan; |
| Predicting malignancy from mammography findings and image-guided core biopsies. |
Ferreira, Pedro; Fonseca, Nuno A; Dutra, Inês; Woods, Ryan; Burnside, Elizabeth |
International journal of data mining and bioinformatics. |
26333262 |
2015; |
| Cognitive heterogeneity in adult attention deficit/hyperactivity disorder: A systematic analysis of neuropsychological measurements. |
Mostert, Jeanette C; Onnink, A Marten H; Klein, Marieke; Dammers, Janneke; Harneit, Anais; Schulten, Theresa; van Hulzen, Kimm J E; Kan, Cornelis C; Slaats-Willemse, Dorine; Buitelaar, Jan K; Franke, Barbara; Hoogman, Martine |
European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. |
26336867 |
2015 Nov; |
| Large-scale extraction of gene interactions from full-text literature using DeepDive. |
Mallory, Emily K; Zhang, Ce; Ré, Christopher; Altman, Russ B |
Bioinformatics (Oxford, England). |
26338771 |
2016 Jan 1; |
| A predictive modeling approach for cell line-specific long-range regulatory interactions. |
Roy, Sushmita; Siahpirani, Alireza Fotuhi; Chasman, Deborah; Knaack, Sara; Ay, Ferhat; Stewart, Ron; Wilson, Michael; Sridharan, Rupa |
Nucleic acids research. |
26338778 |
2015 Oct 15; |
| Cannabis use in early adolescence: Evidence of amygdala hypersensitivity to signals of threat. |
Spechler, Philip A; Orr, Catherine A; Chaarani, Bader; Kan, Kees-Jan; Mackey, Scott; Morton, Aaron; Snowe, Mitchell P; Hudson, Kelsey E; Althoff, Robert R; Higgins, Stephen T; Cattrell, Anna; Flor, Herta; Nees, Frauke; Banaschewski, Tobias; Bokde, Arun L W; Whelan, Robert; Büchel, Christian; Bromberg, Uli; Conrod, Patricia; Frouin, Vincent; Papadopoulos, Dimitri; Gallinat, Jurgen; Heinz, Andreas; Walter, Henrik; Ittermann, Bernd; Gowland, Penny; Paus, Tomá?; Poustka, Luise; Martinot, Jean-Luc; Artiges, Eric; Smolka, Michael N; Schumann, Gunter; Garavan, Hugh; IMAGEN Consortium |
Developmental cognitive neuroscience. |
26347227 |
2015 Dec; |
| Fused Lasso Screening Rules via the Monotonicity of Subdifferentials. |
Wang, Jie; Fan, Wei; Ye, Jieping |
IEEE transactions on pattern analysis and machine intelligence. |
26353128 |
2015 Sep; |
| Cardiac myosin-binding protein C (MYBPC3) in cardiac pathophysiology. |
Carrier, Lucie; Mearini, Giulia; Stathopoulou, Konstantina; Cuello, Friederike |
Gene. |
26358504 |
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| The cardiac sodium channel gene SCN5A and its gene product NaV1.5: Role in physiology and pathophysiology. |
Veerman, Christiaan C; Wilde, Arthur A M; Lodder, Elisabeth M |
Gene. |
26361848 |
2015 Dec 1; |
| MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI. |
Fan, Qiuyun; Witzel, Thomas; Nummenmaa, Aapo; Van Dijk, Koene R A; Van Horn, John D; Drews, Michelle K; Somerville, Leah H; Sheridan, Margaret A; Santillana, Rosario M; Snyder, Jenna; Hedden, Trey; Shaw, Emily E; Hollinshead, Marisa O; Renvall, Ville; Zanzonico, Roberta; Keil, Boris; Cauley, Stephen; Polimeni, Jonathan R; Tisdall, Dylan; Buckner, Randy L; Wedeen, Van J; Wald, Lawrence L; Toga, Arthur W; Rosen, Bruce R |
NeuroImage. |
26364861 |
2016 Jan 01; |
| Backward multiple imputation estimation of the conditional lifetime expectancy function with application to censored human longevity data. |
Kong, Jing; Klein, Barbara E K; Klein, Ronald; Wahba, Grace |
Proceedings of the National Academy of Sciences of the United States of America. |
26371300 |
2015 Sep 29; |
| Similar Subgroups Based on Cognitive Performance Parse Heterogeneity in Adults With ADHD and Healthy Controls. |
Mostert, Jeanette C; Hoogman, Martine; Onnink, A Marten H; van Rooij, Daan; von Rhein, Daniel; van Hulzen, Kimm J E; Dammers, Janneke; Kan, Cornelis C; Buitelaar, Jan K; Norris, David G; Franke, Barbara |
Journal of attention disorders. |
26374770 |
2018 Feb; |
| Genes influence the amplitude and timing of brain hemodynamic responses. |
Shan, Zuyao Y; Vinkhuyzen, Anna A E; Thompson, Paul M; McMahon, Katie L; Blokland, Gabriëlla A M; de Zubicaray, Greig I; Calhoun, Vince; Martin, Nicholas G; Visscher, Peter M; Wright, Margaret J; Reutens, David C |
NeuroImage. |
26375212 |
2016 Jan 01; |
| Structure and functional roles of Epac2 (Rapgef4). |
Sugawara, Kenji; Shibasaki, Tadao; Takahashi, Harumi; Seino, Susumu |
Gene. |
26390815 |
2016 Jan 10; |
| p38 MAP kinases in the heart. |
Yokota, Tomohiro; Wang, Yibin |
Gene. |
26390817 |
2016 Jan 10; |
| Tensor-Based Morphometry Reveals Volumetric Deficits in Moderate=Severe Pediatric Traumatic Brain Injury. |
Dennis, Emily L; Hua, Xue; Villalon-Reina, Julio; Moran, Lisa M; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
Journal of neurotrauma. |
26393494 |
2016 05 01; |
| KCNE1 and KCNE3: The yin and yang of voltage-gated K(+) channel regulation. |
Abbott, Geoffrey W |
Gene. |
26410412 |
2016 Jan 15; |
| Random Forest Classification of Depression Status Based On Subcortical Brain Morphometry Following Electroconvulsive Therapy. |
Wade, Benjamin S C; Joshi, Shantanu H; Pirnia, Tara; Leaver, Amber M; Woods, Roger P; Thompson, Paul M; Espinoza, Randall; Narr, Katherine L |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413200 |
2015 Apr; |
| FEATURE SELECTION IMPROVES THE ACCURACY OF CLASSIFYING ALZHEIMER DISEASE USING DIFFUSION TENSOR IMAGES. |
Demirhan, Ay?e; Nir, Talia M; Zavaliangos-Petropulu, Artemis; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M; Jahanshad, Neda; Alzheimer?s Disease Neuroimaging Initiative (ADNI) |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413201 |
2015 Apr; |
| Boosting Classification Accuracy of Diffusion MRI Derived Brain Networks for the Subtypes of Mild Cognitive Impairment Using Higher Order Singular Value Decomposition. |
Zhan, L; Liu, Y; Zhou, J; Ye, J; Thompson, P M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413202 |
2015 Apr; |
| AUTOMATED MULTI-ATLAS LABELING OF THE FORNIX AND ITS INTEGRITY IN ALZHEIMER'S DISEASE. |
Jin, Yan; Shi, Yonggang; Zhan, Liang; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative (ADNI) |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413203 |
2015 Apr; |
| HERITABILITY OF BRAIN NETWORK TOPOLOGY IN 853 TWINS AND SIBLINGS. |
Zhan, L; Jahanshad, N; Faskowitz, J; Zhu, D; Prasad, G; Martin, N G; de Zubicaray, G I; McMahon, K L; Wright, M J; Thompson, P M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413204 |
2015 Apr; |
| SPECTRAL GRAPH THEORY AND GRAPH ENERGY METRICS SHOW EVIDENCE FOR THE ALZHEIMER'S DISEASE DISCONNECTION SYNDROME IN APOE-4 RISK GENE CARRIERS. |
Daianu, Madelaine; Mezher, Adam; Jahanshad, Neda; Hibar, Derrek P; Nir, Talia M; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matt A; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413205 |
2015 Apr; |
| WHITE MATTER INTEGRITY IN TRAUMATIC BRAIN INJURY: EFFECTS OF PERMISSIBLE FIBER TURNING ANGLE. |
Dennis, Emily L; Jin, Yan; Kernan, Claudia; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413206 |
2015 Apr; |
| MAPPING ABNORMAL SUBCORTICAL BRAIN MORPHOMETRY IN AN ELDERLY HIV+ COHORT. |
Wade, Benjamin S C; Valcour, Victor G; Wendelken-Riegelhaupt, Lauren; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Wang, Yalin; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413207 |
2015 Apr; |
| Information-Theoretic Characterization of Blood Panel Predictors for Brain Atrophy and Cognitive Decline in the Elderly. |
Madsen, Sarah K; Ver Steeg, Greg; Mezher, Adam; Jahanshad, Neda; Nir, Talia M; Hua, Xue; Gutman, Boris A; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative (ADNI) |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413208 |
2015 Apr; |
| Detecting Genetic Risk Factors for Alzheimer's Disease in Whole Genome Sequence Data via Lasso Screening. |
Yang, Tao; Wang, Jie; Sun, Qian; Hibar, Derrek P; Jahanshad, Neda; Liu, Li; Wang, Yalin; Zhan, Liang; Thompson, Paul M; Ye, Jieping |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413209 |
2015 Apr; |
| GENETIC ANALYSIS OF STRUCTURAL BRAIN CONNECTIVITY USING DICCCOL MODELS OF DIFFUSION MRI IN 522 TWINS. |
Zhu, Dajiang; Zhan, Liang; Faskowitz, Joshua; Daianu, Madelaine; Jahanshad, Neda; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413210 |
2015 Apr; |
| Medial Demons Registration Localizes The Degree of Genetic Influence Over Subcortical Shape Variability: An N= 1480 Meta-Analysis. |
Gutman, Boris A; Jahanshad, Neda; Ching, Christopher R K; Wang, Yalin; Kochunov, Peter V; Nichols, Thomas E; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
26413211 |
2015 Apr; |
| Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis. |
Hu, Dong; Gur, Mert; Zhou, Zhuan; Gamper, Armin; Hung, Mien-Chie; Fujita, Naoya; Lan, Li; Bahar, Ivet; Wan, Yong |
Nature communications. |
26420673 |
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| Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism. |
Papale, Ligia A; Zhang, Qi; Li, Sisi; Chen, Kailei; Kele?, Sündüz; Alisch, Reid S |
Human molecular genetics. |
26423458 |
2015 Dec 15; |
| Endothelial nitric oxide synthase: From biochemistry and gene structure to clinical implications of NOS3 polymorphisms. |
Oliveira-Paula, Gustavo H; Lacchini, Riccardo; Tanus-Santos, Jose E |
Gene. |
26428312 |
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| Optimal mass transport for shape matching and comparison. |
Su, Zhengyu; Wang, Yalin; Shi, Rui; Zeng, Wei; Sun, Jian; Luo, Feng; Gu, Xianfeng |
IEEE transactions on pattern analysis and machine intelligence. |
26440265 |
2015 Nov; |
| Structural Neuroimaging Genetics Interactions in Alzheimer's Disease. |
Moon, Seok Woo; Dinov, Ivo D; Kim, Jaebum; Zamanyan, Alen; Hobel, Sam; Thompson, Paul M; Toga, Arthur W |
Journal of Alzheimer's disease : JAD. |
26444770 |
2015; |
| Risk of Type 2 Diabetes Is Lower in US Adults Taking Chromium-Containing Supplements. |
McIver, David J; Grizales, Ana Maria; Brownstein, John S; Goldfine, Allison B |
The Journal of nutrition. |
26446484 |
2015 Dec; |
| Age exacerbates HIV-associated white matter abnormalities. |
Seider, Talia R; Gongvatana, Assawin; Woods, Adam J; Chen, Huaihou; Porges, Eric C; Cummings, Tiffany; Correia, Stephen; Tashima, Karen; Cohen, Ronald A |
Journal of neurovirology. |
26446690 |
2016 Apr; |
| HFE gene: Structure, function, mutations, and associated iron abnormalities. |
Barton, James C; Edwards, Corwin Q; Acton, Ronald T |
Gene. |
26456104 |
2015 Dec 15; |
| Neurocognitive Deficits in Attention-Deficit/Hyperactivity Disorder With and Without Comorbid Oppositional Defiant Disorder. |
Noordermeer, Siri D S; Luman, Marjolein; Buitelaar, Jan K; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Faraone, Stephen V; Heslenfeld, Dirk J; Oosterlaan, Jaap |
Journal of attention disorders. |
26486602 |
2015 Oct 20; |
| A comprehensive Candida albicans PeptideAtlas build enables deep proteome coverage. |
Vialas, Vital; Sun, Zhi; Reales-Calderón, Jose A; Hernáez, María L; Casas, Vanessa; Carrascal, Montserrat; Abián, Joaquín; Monteoliva, Lucía; Deutsch, Eric W; Moritz, Robert L; Gil, Concha |
Journal of proteomics. |
26493587 |
2016 Jan 10; |
| The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects. |
Kochunov, Peter; Thompson, Paul M; Winkler, Anderson; Morrissey, Mary; Fu, Mao; Coyle, Thomas R; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Gaudiot, Christopher; Sampath, Hemalatha; Eskandar, George; Jahanshad, Neda; Patel, Binish; Rowland, Laura; Nichols, Thomas E; O'Connell, Jeffrey R; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L Elliot |
NeuroImage. |
26499807 |
2016 Jan 15; |
| Computational discovery of transcription factors associated with drug response. |
Hanson, C; Cairns, J; Wang, L; Sinha, S |
The pharmacogenomics journal. |
26503816 |
2016 Nov; |
| Transcriptomic and genetic studies identify NFAT5 as a candidate gene for cocaine dependence. |
Fernàndez-Castillo, N; Cabana-Domínguez, J; Soriano, J; Sànchez-Mora, C; Roncero, C; Grau-López, L; Ros-Cucurull, E; Daigre, C; van Donkelaar, M M J; Franke, B; Casas, M; Ribasés, M; Cormand, B |
Translational psychiatry. |
26506053 |
2015; |
| Comparing Mammography Abnormality Features to Genetic Variants in the Prediction of Breast Cancer in Women Recommended for Breast Biopsy. |
Burnside, Elizabeth S; Liu, Jie; Wu, Yirong; Onitilo, Adedayo A; McCarty, Catherine A; Page, C David; Peissig, Peggy L; Trentham-Dietz, Amy; Kitchner, Terrie; Fan, Jun; Yuan, Ming |
Academic radiology. |
26514439 |
2016 Jan; |
| An advanced white matter tract analysis in frontotemporal dementia and early-onset Alzheimer's disease. |
Daianu, Madelaine; Mendez, Mario F; Baboyan, Vatche G; Jin, Yan; Melrose, Rebecca J; Jimenez, Elvira E; Thompson, Paul M |
Brain imaging and behavior. |
26515192 |
2016 Dec; |
| Global Data Sharing in Alzheimer Disease Research. |
Ashish, Naveen; Bhatt, Priya; Toga, Arthur W |
Alzheimer disease and associated disorders. |
26523713 |
2016 Apr-Jun; |
| TNNI1, TNNI2 and TNNI3: Evolution, regulation, and protein structure-function relationships. |
Sheng, Juan-Juan; Jin, Jian-Ping |
Gene. |
26526134 |
2016 Jan 15; |
| Heritability of complex white matter diffusion traits assessed in a population isolate. |
Kochunov, Peter; Fu, Mao; Nugent, Katie; Wright, Susan N; Du, Xiaoming; Muellerklein, Florian; Morrissey, Mary; Eskandar, George; Shukla, Dinesh K; Jahanshad, Neda; Thompson, Paul M; Patel, Binish; Postolache, Teodor T; Strauss, Kevin A; Shuldiner, Alan R; Mitchell, Braxton D; Hong, L Elliot |
Human brain mapping. |
26538488 |
2016 Feb; |
| iShadow: Design of a Wearable, Real-Time Mobile Gaze Tracker. |
Mayberry, Addison; Hu, Pan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, Deepak |
MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. |
26539565 |
2014 Jun; |
| Visualization of Time-Series Sensor Data to Inform the Design of Just-In-Time Adaptive Stress Interventions. |
Sharmin, Moushumi; Raij, Andrew; Epstien, David; Nahum-Shani, Inbal; Beck, J Gayle; Vhaduri, Sudip; Preston, Kenzie; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
26539566 |
2015 Sep; |
| Automated-immunosensor with centrifugal fluid valves for salivary cortisol measurement. |
Yamaguchi, Masaki; Katagata, Hiroki; Tezuka, Yuki; Niwa, Daisuke; Shetty, Vivek |
Sensing and Bio-Sensing Research. |
26543818 |
2014 Aug; |
| Stress: Towards a Gold Standard for Continuous Stress Assessment in the Mobile Environment. |
Hovsepian, Karen; al'Absi, Mustafa; Ertin, Emre; Kamarck, Thomas; Nakajima, Motohiro; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
26543926 |
2015 Sep; |
| puffMarker: A Multi-Sensor Approach for Pinpointing the Timing of First Lapse in Smoking Cessation. |
Saleheen, Nazir; Ali, Amin Ahsan; Hossain, Syed Monowar; Sarker, Hillol; Chatterjee, Soujanya; Marlin, Benjamin; Ertin, Emre; al'Absi, Mustafa; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
26543927 |
2015 Sep; |
| MRI-based brain atrophy rates in ADNI phase 2: acceleration and enrichment considerations for clinical trials. |
Hua, Xue; Ching, Christopher R K; Mezher, Adam; Gutman, Boris A; Hibar, Derrek P; Bhatt, Priya; Leow, Alex D; Jack Jr, Clifford R; Bernstein, Matt A; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Neurobiology of aging. |
26545631 |
2016 Jan; |
| Jagged1 (JAG1): Structure, expression, and disease associations. |
Grochowski, Christopher M; Loomes, Kathleen M; Spinner, Nancy B |
Gene. |
26548814 |
2016 Jan 15; |
| Center of excellence for mobile sensor data-to-knowledge (MD2K). |
Kumar, Santosh; Abowd, Gregory D; Abraham, William T; al'Absi, Mustafa; Beck, J Gayle; Chau, Duen Horng; Condie, Tyson; Conroy, David E; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Lam, Cho; Marlin, Benjamin; Marsh, Clay B; Murphy, Susan A; Nahum-Shani, Inbal; Patrick, Kevin; Rehg, James M; Sharmin, Moushumi; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, David W |
Journal of the American Medical Informatics Association : JAMIA. |
26555017 |
2015 Nov; |
| Entorhinal Cortex Thickness across the Human Lifespan. |
Hasan, Khader M; Mwangi, Benson; Cao, Bo; Keser, Zafer; Tustison, Nicholas J; Kochunov, Peter; Frye, Richard E; Savatic, Mirjana; Soares, Jair |
Journal of neuroimaging : official journal of the American Society of Neuroimaging. |
26565394 |
2016 May; |
| Sharing the wealth: Neuroimaging data repositories. |
Eickhoff, Simon; Nichols, Thomas E; Van Horn, John D; Turner, Jessica A |
NeuroImage. |
26574120 |
2016 Jan 1; |
| Childhood abuse and deprivation are associated with distinct sex-dependent differences in brain morphology. |
Everaerd, Daphne; Klumpers, Floris; Zwiers, Marcel; Guadalupe, Tulio; Franke, Barbara; van Oostrom, Iris; Schene, Aart; Fernández, Guillén; Tendolkar, Indira |
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
26576924 |
2016 Jun; |
| Cracking the brain's genetic code. |
Thompson, Paul M |
Proceedings of the National Academy of Sciences of the United States of America. |
26582794 |
2015 Dec 15; |
| The UCSC Genome Browser database: 2016 update. |
Speir, Matthew L; Zweig, Ann S; Rosenbloom, Kate R; Raney, Brian J; Paten, Benedict; Nejad, Parisa; Lee, Brian T; Learned, Katrina; Karolchik, Donna; Hinrichs, Angie S; Heitner, Steve; Harte, Rachel A; Haeussler, Maximilian; Guruvadoo, Luvina; Fujita, Pauline A; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P; Haussler, David; Kuhn, Robert M; Kent, W James |
Nucleic acids research. |
26590259 |
2016 Jan 4; |
| Genome-wide alterations in hippocampal 5-hydroxymethylcytosine links plasticity genes to acute stress. |
Li, Sisi; Papale, Ligia A; Zhang, Qi; Madrid, Andy; Chen, Li; Chopra, Pankaj; Kele?, Sündüz; Jin, Peng; Alisch, Reid S |
Neurobiology of disease. |
26598390 |
2016 Feb; |
| Binary Classifier Calibration Using a Bayesian Non-Parametric Approach. |
Naeini, Mahdi Pakdaman; Cooper, Gregory F; Hauskrecht, Milos |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
26613068 |
2015; |
| Using computer-extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage. |
Burnside, Elizabeth S; Drukker, Karen; Li, Hui; Bonaccio, Ermelinda; Zuley, Margarita; Ganott, Marie; Net, Jose M; Sutton, Elizabeth J; Brandt, Kathleen R; Whitman, Gary J; Conzen, Suzanne D; Lan, Li; Ji, Yuan; Zhu, Yitan; Jaffe, Carl C; Huang, Erich P; Freymann, John B; Kirby, Justin S; Morris, Elizabeth A; Giger, Maryellen L |
Cancer. |
26619259 |
2016 Mar 01; |
| Saul: Towards Declarative Learning Based Programming. |
Kordjamshidi, Parisa; Roth, Dan; Wu, Hao |
IJCAI : proceedings of the conference. |
26635465 |
2015 Jul; |
| Mapping abnormal subcortical brain morphometry in an elderly HIV+ cohort. |
Wade, Benjamin S C; Valcour, Victor G; Wendelken-Riegelhaupt, Lauren; Esmaeili-Firidouni, Pardis; Joshi, Shantanu H; Gutman, Boris A; Thompson, Paul M |
NeuroImage. Clinical. |
26640768 |
2015; |
| Algebraic connectivity of brain networks shows patterns of segregation leading to reduced network robustness in Alzheimer's disease. |
Daianu, Madelaine; Jahanshad, Neda; Nir, Talia M; Leonardo, Cassandra D; Jack Jr, Clifford R; Weiner, Michael W; Bernstein, Matthew A; Thompson, Paul M |
Computational diffusion MRI : MICCAI Workshop, Boston, MA, USA, September 2014. CDMRI (Workshop) (6th : 2014 : Boston, Mass.). |
26640830 |
2014; |
| Characterizing Smoking and Drinking Abstinence from Social Media. |
Tamersoy, Acar; De Choudhury, Munmun; Chau, Duen Horng |
HT ... : the proceedings of the ... ACM Conference on Hypertext and Social Media. ACM Conference on Hypertext and Social Media. |
26640831 |
2015 Sep; |
| Cerebral Amyloid and Hypertension are Independently Associated with White Matter Lesions in Elderly. |
Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; Alzheimer?s Disease Neuroimaging Initiative |
Frontiers in aging neuroscience. |
26648866 |
2015; |
| Building health behavior models to guide the development of just-in-time adaptive interventions: A pragmatic framework. |
Nahum-Shani, Inbal; Hekler, Eric B; Spruijt-Metz, Donna |
Health psychology : official journal of the Division of Health Psychology, American Psychological Association. |
26651462 |
2015 Dec; |
| Microrandomized trials: An experimental design for developing just-in-time adaptive interventions. |
Klasnja, Predrag; Hekler, Eric B; Shiffman, Saul; Boruvka, Audrey; Almirall, Daniel; Tewari, Ambuj; Murphy, Susan A |
Health psychology : official journal of the Division of Health Psychology, American Psychological Association. |
26651463 |
2015 Dec; |
| The Reactome pathway Knowledgebase. |
Fabregat, Antonio; Sidiropoulos, Konstantinos; Garapati, Phani; Gillespie, Marc; Hausmann, Kerstin; Haw, Robin; Jassal, Bijay; Jupe, Steven; Korninger, Florian; McKay, Sheldon; Matthews, Lisa; May, Bruce; Milacic, Marija; Rothfels, Karen; Shamovsky, Veronica; Webber, Marissa; Weiser, Joel; Williams, Mark; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, Peter |
Nucleic acids research. |
26656494 |
2016 Jan 4; |
| ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide. |
Thompson, Paul M; Andreassen, Ole A; Arias-Vasquez, Alejandro; Bearden, Carrie E; Boedhoe, Premika S; Brouwer, Rachel M; Buckner, Randy L; Buitelaar, Jan K; Bulayeva, Kazima B; Cannon, Dara M; Cohen, Ronald A; Conrod, Patricia J; Dale, Anders M; Deary, Ian J; Dennis, Emily L; de Reus, Marcel A; Desrivieres, Sylvane; Dima, Danai; Donohoe, Gary; Fisher, Simon E; Fouche, Jean-Paul; Francks, Clyde; Frangou, Sophia; Franke, Barbara; Ganjgahi, Habib; Garavan, Hugh; Glahn, David C; Grabe, Hans J; Guadalupe, Tulio; Gutman, Boris A; Hashimoto, Ryota; Hibar, Derrek P; Holland, Dominic; Hoogman, Martine; Pol, Hilleke E Hulshoff; Hosten, Norbert; Jahanshad, Neda; Kelly, Sinead; Kochunov, Peter; Kremen, William S; Lee, Phil H; Mackey, Scott; Martin, Nicholas G; Mazoyer, Bernard; McDonald, Colm; Medland, Sarah E; Morey, Rajendra A; Nichols, Thomas E; Paus, Tomas; Pausova, Zdenka; Schmaal, Lianne; Schumann, Gunter; Shen, Li; Sisodiya, Sanjay M; Smit, Dirk J A; Smoller, Jordan W; Stein, Dan J; Stein, Jason L; Toro, Roberto; Turner, Jessica A; van den Heuvel, Martijn P; van den Heuvel, Odile L; van Erp, Theo G M; van Rooij, Daan; Veltman, Dick J; Walter, Henrik; Wang, Yalin; Wardlaw, Joanna M; Whelan, Christopher D; Wright, Margaret J; Ye, Jieping; ENIGMA Consortium |
NeuroImage. |
26658930 |
; |
| Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves. |
Buffon, Giseli; Blasi, Édina A R; Adamski, Janete M; Ferla, Noeli J; Berger, Markus; Santi, Lucélia; Lavallée-Adam, Mathieu; Yates 3rd, John R; Beys-da-Silva, Walter O; Sperotto, Raul A |
Journal of proteome research. |
26667653 |
2016 Feb 05; |
| Disrupted rich club network in behavioral variant frontotemporal dementia and early-onset Alzheimer's disease. |
Daianu, Madelaine; Mezher, Adam; Mendez, Mario F; Jahanshad, Neda; Jimenez, Elvira E; Thompson, Paul M |
Human brain mapping. |
26678225 |
2016 Mar; |
| Voxel-based morphometry analysis reveals frontal brain differences in participants with ADHD and their unaffected siblings. |
Bralten, Janita; Greven, Corina U; Franke, Barbara; Mennes, Maarten; Zwiers, Marcel P; Rommelse, Nanda N J; Hartman, Catharina; van der Meer, Dennis; O'Dwyer, Laurence; Oosterlaan, Jaap; Hoekstra, Pieter J; Heslenfeld, Dirk; Arias-Vasquez, Alejandro; Buitelaar, Jan K |
Journal of psychiatry & neuroscience : JPN. |
26679925 |
2016 Jun; |
| Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses. |
Andres-Terre, Marta; McGuire, Helen M; Pouliot, Yannick; Bongen, Erika; Sweeney, Timothy E; Tato, Cristina M; Khatri, Purvesh |
Immunity. |
26682989 |
2015 Dec 15; |
| Multi-Shell Hybrid Diffusion Imaging (HYDI) at 7 Tesla in TgF344-AD Transgenic Alzheimer Rats. |
Daianu, Madelaine; Jacobs, Russell E; Weitz, Tara M; Town, Terrence C; Thompson, Paul M |
PloS one. |
26683657 |
2015; |
| Protein kinase A catalytic subunit isoform PRKACA; History, function and physiology. |
Turnham, Rigney E; Scott, John D |
Gene. |
26687711 |
2016 Feb 15; |
| RisQ: Recognizing Smoking Gestures with Inertial Sensors on a Wristband. |
Parate, Abhinav; Chiu, Meng-Chieh; Chadowitz, Chaniel; Ganesan, Deepak; Kalogerakis, Evangelos |
MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. |
26688835 |
2014 Jun; |
| A predictive enrichment procedure to identify potential responders to a new therapy for randomized, comparative controlled clinical studies. |
Li, Junlong; Zhao, Lihui; Tian, Lu; Cai, Tianxi; Claggett, Brian; Callegaro, Andrea; Dizier, Benjamin; Spiessens, Bart; Ulloa-Montoya, Fernando; Wei, Lee-Jen |
Biometrics. |
26689167 |
2016 Sep; |
| Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures. |
Prilutsky, Daria; Kho, Alvin T; Palmer, Nathan P; Bhakar, Asha L; Smedemark-Margulies, Niklas; Kong, Sek Won; Margulies, David M; Bear, Mark F; Kohane, Isaac S |
Molecular autism |
26697163 |
2015 |
| The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine. |
Hesselager, Marianne O; Codrea, Marius C; Sun, Zhi; Deutsch, Eric W; Bennike, Tue B; Stensballe, Allan; Bundgaard, Louise; Moritz, Robert L; Bendixen, Emøke |
Proteomics. |
26699206 |
2016 Feb; |
| Mining Quality Phrases from Massive Text Corpora. |
Liu, Jialu; Shang, Jingbo; Wang, Chi; Ren, Xiang; Han, Jiawei |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
26705375 |
2015 May-Jun; |
| On the Discovery of Evolving Truth. |
Li, Yaliang; Li, Qi; Gao, Jing; Su, Lu; Zhao, Bo; Fan, Wei; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705502 |
2015 Aug; |
| ClusType: Effective Entity Recognition and Typing by Relation Phrase-Based Clustering. |
Ren, Xiang; El-Kishky, Ahmed; Wang, Chi; Tao, Fangbo; Voss, Clare R; Ji, Heng; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705503 |
2015 Aug; |
| Incorporating World Knowledge to Document Clustering via Heterogeneous Information Networks. |
Wang, Chenguang; Song, Yangqiu; El-Kishky, Ahmed; Roth, Dan; Zhang, Ming; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705504 |
2015 Aug; |
| Towards Interactive Construction of Topical Hierarchy: A Recursive Tensor Decomposition Approach. |
Wang, Chi; Liu, Xueqing; Song, Yanglei; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705505 |
2015 Aug; |
| Assembler: Efficient Discovery of Spatial Co-evolving Patterns in Massive Geo-sensory Data. |
Zhang, Chao; Zheng, Yu; Ma, Xiuli; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705506 |
2015 Aug; |
| Modeling Truth Existence in Truth Discovery. |
Zhi, Shi; Zhao, Bo; Tong, Wenzhu; Gao, Jing; Yu, Dian; Ji, Heng; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705507 |
2015 Aug; |
| Automatic Entity Recognition and Typing from Massive Text Corpora: A Phrase and Network Mining Approach. |
Ren, Xiang; El-Kishky, Ahmed; Wang, Chi; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26705508 |
2015 Aug; |
| Graph Regularized Meta-path Based Transductive Regression in Heterogeneous Information Network. |
Wan, Mengting; Ouyang, Yunbo; Kaplan, Lance; Han, Jiawei |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
26705510 |
2015 Apr-May; |
| Leveraging Pattern Semantics for Extracting Entities in Enterprises. |
Tao, Fangbo; Zhao, Bo; Fuxman, Ariel; Li, Yang; Han, Jiawei |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
26705540 |
2015 May; |
| Robust Classification of Information Networks by Consistent Graph Learning. |
Zhi, Shi; Han, Jiawei; Gu, Quanquan |
Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). |
26705541 |
2015 Sep; |
| Sample size calculations for micro-randomized trials in mHealth. |
Liao, Peng; Klasnja, Predrag; Tewari, Ambuj; Murphy, Susan A |
Statistics in medicine. |
26707831 |
2016 05 30; |
| TOPTRAC: Topical Trajectory Pattern Mining. |
Kim, Younghoon; Han, Jiawei; Yuan, Cangzhou |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26709365 |
2015 Aug; |
| Fast Inbound Top-K Query for Random Walk with Restart. |
Zhang, Chao; Jiang, Shan; Chen, Yucheng; Sun, Yidan; Han, Jiawei |
Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). |
26709392 |
2015 Sep; |
| Debiasing Crowdsourced Batches. |
Zhuang, Honglei; Parameswaran, Aditya; Roth, Dan; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
26713175 |
2015 Aug; |
| Comment: Getting a handle on HAND in the era of cART. |
Cohen, Ronald A; Navia, Bradford |
Neurology. |
26718565 |
2016 Jan 26; |
| Matrix metalloproteinases as input and output signals for post-myocardial infarction remodeling. |
Lindsey, Merry L; Iyer, Rugmani Padmanabhan; Jung, Mira; DeLeon-Pennell, Kristine Y; Ma, Yonggang |
Journal of molecular and cellular cardiology. |
26721597 |
2016 Feb; |
| Titian: Data Provenance Support in Spark. |
Interlandi, Matteo; Shah, Kshitij; Tetali, Sai Deep; Gulzar, Muhammad Ali; Yoo, Seunghyun; Kim, Miryung; Millstein, Todd; Condie, Tyson |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26726305 |
2015 Nov; |
| Conditional Random Fields for Morphological Analysis of Wireless ECG Signals. |
Natarajan, Annamalai; Gaiser, Edward; Angarita, Gustavo; Malison, Robert; Ganesan, Deepak; Marlin, Benjamin |
ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. |
26726321 |
2014; |
| LRP5: A novel anti-inflammatory macrophage marker that positively regulates migration and phagocytosis. |
Ma, Yonggang |
Journal of molecular and cellular cardiology. |
26739212 |
2016 Feb; |
| The crossroads of inflammation, fibrosis, and arrhythmia following myocardial infarction. |
Francis Stuart, Samantha D; De Jesus, Nicole M; Lindsey, Merry L; Ripplinger, Crystal M |
Journal of molecular and cellular cardiology. |
26739214 |
2016 Feb; |
| UCSC Data Integrator and Variant Annotation Integrator. |
Hinrichs, Angie S; Raney, Brian J; Speir, Matthew L; Rhead, Brooke; Casper, Jonathan; Karolchik, Donna; Kuhn, Robert M; Rosenbloom, Kate R; Zweig, Ann S; Haussler, David; Kent, W James |
Bioinformatics (Oxford, England). |
26740527 |
2016 May 01; |
| The Budding Yeast Ubiquitin Protease Ubp7 Is a Novel Component Involved in S Phase Progression. |
Böhm, Stefanie; Szakal, Barnabas; Herken, Benjamin W; Sullivan, Meghan R; Mihalevic, Michael J; Kabbinavar, Faiz F; Branzei, Dana; Clark, Nathan L; Bernstein, Kara A |
The Journal of biological chemistry. |
26740628 |
2016 Feb 26; |
| OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data. |
Leng, Ning; Choi, Jeea; Chu, Li-Fang; Thomson, James A; Kendziorski, Christina; Stewart, Ron |
Bioinformatics (Oxford, England). |
26743507 |
2016 May 01; |
| Head Motion and Inattention/Hyperactivity Share Common Genetic Influences: Implications for fMRI Studies of ADHD. |
Couvy-Duchesne, Baptiste; Ebejer, Jane L; Gillespie, Nathan A; Duffy, David L; Hickie, Ian B; Thompson, Paul M; Martin, Nicholas G; de Zubicaray, Greig I; McMahon, Katie L; Medland, Sarah E; Wright, Margaret J |
PloS one. |
26745144 |
2016; |
| Heritability and reliability of automatically segmented human hippocampal formation subregions. |
Whelan, Christopher D; Hibar, Derrek P; van Velzen, Laura S; Zannas, Anthony S; Carrillo-Roa, Tania; McMahon, Katie; Prasad, Gautam; Kelly, Sinéad; Faskowitz, Joshua; deZubiracay, Greig; Iglesias, Juan E; van Erp, Theo G M; Frodl, Thomas; Martin, Nicholas G; Wright, Margaret J; Jahanshad, Neda; Schmaal, Lianne; Sämann, Philipp G; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
26747746 |
2016 Mar; |
| May the fibrosis be with you: Is discoidin domain receptor 2 the receptor we have been looking for? |
DeLeon-Pennell, Kristine Y |
Journal of molecular and cellular cardiology. |
26772530 |
2016 Feb; |
| TNNT1, TNNT2, and TNNT3: Isoform genes, regulation, and structure-function relationships. |
Wei, Bin; Jin, J-P |
Gene. |
26774798 |
2016 May 10; |
| REPRODUCIBLE AND SHAREABLE QUANTIFICATIONS OF PATHOGENICITY. |
Manrai, Arjun K; Wang, Brice L; Patel, Chirag J; Kohane, Isaac S |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
26776189 |
2016; |
| SeeDB: Efficient Data-Driven Visualization Recommendations to Support Visual Analytics. |
Vartak, Manasi; Rahman, Sajjadur; Madden, Samuel; Parameswaran, Aditya; Polyzotis, Neoklis |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26779379 |
2015 Sep; |
| Rapid Sampling for Visualizations with Ordering Guarantees. |
Kim, Albert; Blais, Eric; Parameswaran, Aditya; Indyk, Piotr; Madden, Sam; Rubinfeld, Ronitt |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26779380 |
2015 Jan; |
| Abnormal asymmetries in subcortical brain volume in schizophrenia. |
Okada, N; Fukunaga, M; Yamashita, F; Koshiyama, D; Yamamori, H; Ohi, K; Yasuda, Y; Fujimoto, M; Watanabe, Y; Yahata, N; Nemoto, K; Hibar, D P; van Erp, T G M; Fujino, H; Isobe, M; Isomura, S; Natsubori, T; Narita, H; Hashimoto, N; Miyata, J; Koike, S; Takahashi, T; Yamasue, H; Matsuo, K; Onitsuka, T; Iidaka, T; Kawasaki, Y; Yoshimura, R; Watanabe, Y; Suzuki, M; Turner, J A; Takeda, M; Thompson, P M; Ozaki, N; Kasai, K; Hashimoto, R |
Molecular psychiatry. |
26782053 |
2016 10; |
| Quantifying prion disease penetrance using large population control cohorts. |
Minikel, Eric Vallabh; Vallabh, Sonia M; Lek, Monkol; Estrada, Karol; Samocha, Kaitlin E; Sathirapongsasuti, J Fah; McLean, Cory Y; Tung, Joyce Y; Yu, Linda P C; Gambetti, Pierluigi; Blevins, Janis; Zhang, Shulin; Cohen, Yvonne; Chen, Wei; Yamada, Masahito; Hamaguchi, Tsuyoshi; Sanjo, Nobuo; Mizusawa, Hidehiro; Nakamura, Yosikazu; Kitamoto, Tetsuyuki; Collins, Steven J; Boyd, Alison; Will, Robert G; Knight, Richard; Ponto, Claudia; Zerr, Inga; Kraus, Theo F J; Eigenbrod, Sabina; Giese, Armin; Calero, Miguel; de Pedro-Cuesta, Jesús; Haïk, Stéphane; Laplanche, Jean-Louis; Bouaziz-Amar, Elodie; Brandel, Jean-Philippe; Capellari, Sabina; Parchi, Piero; Poleggi, Anna; Ladogana, Anna; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Marshall, Jamie L; Boehnke, Michael; Laakso, Markku; Mohlke, Karen L; Kähler, Anna; Chambert, Kimberly; McCarroll, Steven; Sullivan, Patrick F; Hultman, Christina M; Purcell, Shaun M; Sklar, Pamela; van der Lee, Sven J; Rozemuller, Annemieke; Jansen, Casper; Hofman, Albert; Kraaij, Robert; van Rooij, Jeroen G J; Ikram, M Arfan; Uitterlinden, André G; van Duijn, Cornelia M; Exome Aggregation Consortium (ExAC); Daly, Mark J; MacArthur, Daniel G |
Science translational medicine. |
26791950 |
2016 Jan 20; |
| The GAAIN Entity Mapper: An Active-Learning System for Medical Data Mapping. |
Ashish, Naveen; Dewan, Peehoo; Toga, Arthur W |
Frontiers in neuroinformatics. |
26793094 |
2015; |
| Randomised trials for the Fitbit generation. |
Dempsey, Walter; Liao, Peng; Klasnja, Pedja; Nahum-Shani, Inbal; Murphy, Susan A |
Significance (Oxford, England). |
26807137 |
2015 Dec 1; |
| Leveraging Genomic Annotations and Pleiotropic Enrichment for Improved Replication Rates in Schizophrenia GWAS. |
Wang, Yunpeng; Thompson, Wesley K; Schork, Andrew J; Holland, Dominic; Chen, Chi-Hua; Bettella, Francesco; Desikan, Rahul S; Li, Wen; Witoelar, Aree; Zuber, Verena; Devor, Anna; Bipolar Disorder and Schizophrenia Working Group of the Psychiatric Genomics Consortium; Enhancing Neuro Imaging Genetics through Meta Analysis Consortium; Nöthen, Markus M; Rietschel, Marcella; Chen, Qiang; Werge, Thomas; Cichon, Sven; Weinberger, Daniel R; Djurovic, Srdjan; O'Donovan, Michael; Visscher, Peter M; Andreassen, Ole A; Dale, Anders M |
PLoS genetics. |
26808560 |
2016 Jan; |
| REEF: Retainable Evaluator Execution Framework. |
Weimer, Markus; Chen, Yingda; Chun, Byung-Gon; Condie, Tyson; Curino, Carlo; Douglas, Chris; Lee, Yunseong; Majestro, Tony; Malkhi, Dahlia; Matusevych, Sergiy; Myers, Brandon; Narayanamurthy, Shravan; Ramakrishnan, Raghu; Rao, Sriram; Sears, Russell; Sezgin, Beysim; Wang, Julia |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
26819493 |
2015 May-Jun; |
| Genetic imaging consortium for addiction medicine: From neuroimaging to genes. |
Mackey, Scott; Kan, Kees-Jan; Chaarani, Bader; Alia-Klein, Nelly; Batalla, Albert; Brooks, Samantha; Cousijn, Janna; Dagher, Alain; de Ruiter, Michiel; Desrivieres, Sylvane; Feldstein Ewing, Sarah W; Goldstein, Rita Z; Goudriaan, Anna E; Heitzeg, Mary M; Hutchison, Kent; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Morales, Angelica M; Paulus, Martin P; Paus, Tomas; Pearlson, Godfrey; Schluter, Renée; Momenan, Reza; Schmaal, Lianne; Schumann, Gunter; Sinha, Rajita; Sjoerds, Zsuzsika; Stein, Dan J; Stein, Elliot A; Solowij, Nadia; Tapert, Susan; Uhlmann, Anne; Veltman, Dick; van Holst, Ruth; Walter, Henrik; Wright, Margaret J; Yucel, Murat; Yurgelun-Todd, Deborah; Hibar, Derrek P; Jahanshad, Neda; Thompson, Paul M; Glahn, David C; Garavan, Hugh; Conrod, Patricia |
Progress in brain research. |
26822360 |
2016; |
| Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma. |
Ceccarelli, Michele; Barthel, Floris P; Malta, Tathiane M; Sabedot, Thais S; Salama, Sofie R; Murray, Bradley A; Morozova, Olena; Newton, Yulia; Radenbaugh, Amie; Pagnotta, Stefano M; Anjum, Samreen; Wang, Jiguang; Manyam, Ganiraju; Zoppoli, Pietro; Ling, Shiyun; Rao, Arjun A; Grifford, Mia; Cherniack, Andrew D; Zhang, Hailei; Poisson, Laila; Carlotti Jr, Carlos Gilberto; Tirapelli, Daniela Pretti da Cunha; Rao, Arvind; Mikkelsen, Tom; Lau, Ching C; Yung, W K Alfred; Rabadan, Raul; Huse, Jason; Brat, Daniel J; Lehman, Norman L; Barnholtz-Sloan, Jill S; Zheng, Siyuan; Hess, Kenneth; Rao, Ganesh; Meyerson, Matthew; Beroukhim, Rameen; Cooper, Lee; Akbani, Rehan; Wrensch, Margaret; Haussler, David; Aldape, Kenneth D; Laird, Peter W; Gutmann, David H; TCGA Research Network; Noushmehr, Houtan; Iavarone, Antonio; Verhaak, Roel G W |
Cell. |
26824661 |
2016 Jan 28; |
| Characterising resting-state functional connectivity in a large sample of adults with ADHD. |
Mostert, Jeanette C; Shumskaya, Elena; Mennes, Maarten; Onnink, A Marten H; Hoogman, Martine; Kan, Cornelis C; Arias Vasquez, Alejandro; Buitelaar, Jan; Franke, Barbara; Norris, David G |
Progress in neuro-psychopharmacology & biological psychiatry. |
26825495 |
2016 Jun 03; |
| Temporal neutrophil polarization following myocardial infarction. |
Ma, Yonggang; Yabluchanskiy, Andriy; Iyer, Rugmani Padmanabhan; Cannon, Presley L; Flynn, Elizabeth R; Jung, Mira; Henry, Jeffrey; Cates, Courtney A; Deleon-Pennell, Kristine Y; Lindsey, Merry L |
Cardiovascular research. |
26825554 |
2016 May 01; |
| Quantification of private information leakage from phenotype-genotype data: linking attacks. |
Harmanci, Arif; Gerstein, Mark |
Nature methods |
26828419 |
2016 Mar |
| CAreDroid: Adaptation Framework for Android Context-Aware Applications. |
Elmalaki, Salma; Wanner, Lucas; Srivastava, Mani |
Proceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking. |
26834512 |
2015 Sep; |
| MinION Analysis and Reference Consortium: Phase 1 data release and analysis. |
Ip, Camilla L C; Loose, Matthew; Tyson, John R; de Cesare, Mariateresa; Brown, Bonnie L; Jain, Miten; Leggett, Richard M; Eccles, David A; Zalunin, Vadim; Urban, John M; Piazza, Paolo; Bowden, Rory J; Paten, Benedict; Mwaigwisya, Solomon; Batty, Elizabeth M; Simpson, Jared T; Snutch, Terrance P; Birney, Ewan; Buck, David; Goodwin, Sara; Jansen, Hans J; O'Grady, Justin; Olsen, Hugh E; MinION Analysis and Reference Consortium |
F1000Research. |
26834992 |
2015; |
| Developing a utility decision framework to evaluate predictive models in breast cancer risk estimation. |
Wu, Yirong; Abbey, Craig K; Chen, Xianqiao; Liu, Jie; Page, David C; Alagoz, Oguzhan; Peissig, Peggy; Onitilo, Adedayo A; Burnside, Elizabeth S |
Journal of medical imaging (Bellingham, Wash.). |
26835489 |
2015 Oct; |
| Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data. |
Guo, Wentian; Li, Hui; Zhu, Yitan; Lan, Li; Yang, Shengjie; Drukker, Karen; Morris, Elizabeth; Burnside, Elizabeth; Whitman, Gary; Giger, Maryellen L; Ji, Yuan; Tcga Breast Phenotype Research Group |
Journal of medical imaging (Bellingham, Wash.). |
26835491 |
2015 10; |
| Collaborative Data Analytics with DataHub. |
Bhardwaj, Anant; Karger, David; Subramanyam, Harihar; Deshpande, Amol; Madden, Sam; Wu, Eugene; Elmore, Aaron; Parameswaran, Aditya; Zhang, Rebecca |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26844007 |
2015 Aug; |
| Smart Drill-Down: A New Data Exploration Operator. |
Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, Aditya |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26844008 |
2015 Aug; |
| Surpassing Humans and Computers with JellyBean: Crowd-Vision-Hybrid Counting Algorithms. |
Sarma, Akash Das; Jain, Ayush; Nandi, Arnab; Parameswaran, Aditya; Widom, Jennifer |
Proceedings of the ... AAAI Conference on Human Computation and Crowdsourcing. |
26844304 |
2015 Nov; |
| GenAp: a distributed SQL interface for genomic data. |
Kozanitis, Christos; Patterson, David A |
BMC bioinformatics. |
26846841 |
2016 Feb 04; |
| Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. |
Putnam, Nicholas H; O'Connell, Brendan L; Stites, Jonathan C; Rice, Brandon J; Blanchette, Marco; Calef, Robert; Troll, Christopher J; Fields, Andrew; Hartley, Paul D; Sugnet, Charles W; Haussler, David; Rokhsar, Daniel S; Green, Richard E |
Genome research. |
26848124 |
2016 Mar; |
| Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. |
Luo, Yuan; Uzuner, Özlem; Szolovits, Peter |
Briefings in bioinformatics. |
26851224 |
2017 Jan; |
| Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept. |
Franke, Barbara; Stein, Jason L; Ripke, Stephan; Anttila, Verneri; Hibar, Derrek P; van Hulzen, Kimm J E; Arias-Vasquez, Alejandro; Smoller, Jordan W; Nichols, Thomas E; Neale, Michael C; McIntosh, Andrew M; Lee, Phil; McMahon, Francis J; Meyer-Lindenberg, Andreas; Mattheisen, Manuel; Andreassen, Ole A; Gruber, Oliver; Sachdev, Perminder S; Roiz-Santiañez, Roberto; Saykin, Andrew J; Ehrlich, Stefan; Mather, Karen A; Turner, Jessica A; Schwarz, Emanuel; Thalamuthu, Anbupalam; Shugart, Yin Yao; Ho, Yvonne Yw; Martin, Nicholas G; Wright, Margaret J; Schizophrenia Working Group of the Psychiatric Genomics Consortium; ENIGMA Consortium; O'Donovan, Michael C; Thompson, Paul M; Neale, Benjamin M; Medland, Sarah E; Sullivan, Patrick F |
Nature neuroscience. |
26854805 |
2016 Mar; |
| Subcortical volumetric abnormalities in bipolar disorder. |
Hibar, D P; Westlye, L T; van Erp, T G M; Rasmussen, J; Leonardo, C D; Faskowitz, J; Haukvik, U K; Hartberg, C B; Doan, N T; Agartz, I; Dale, A M; Gruber, O; Krämer, B; Trost, S; Liberg, B; Abé, C; Ekman, C J; Ingvar, M; Landén, M; Fears, S C; Freimer, N B; Bearden, C E; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes; Sprooten, E; Glahn, D C; Pearlson, G D; Emsell, L; Kenney, J; Scanlon, C; McDonald, C; Cannon, D M; Almeida, J; Versace, A; Caseras, X; Lawrence, N S; Phillips, M L; Dima, D; Delvecchio, G; Frangou, S; Satterthwaite, T D; Wolf, D; Houenou, J; Henry, C; Malt, U F; Bøen, E; Elvsåshagen, T; Young, A H; Lloyd, A J; Goodwin, G M; Mackay, C E; Bourne, C; Bilderbeck, A; Abramovic, L; Boks, M P; van Haren, N E M; Ophoff, R A; Kahn, R S; Bauer, M; Pfennig, A; Alda, M; Hajek, T; Mwangi, B; Soares, J C; Nickson, T; Dimitrova, R; Sussmann, J E; Hagenaars, S; Whalley, H C; McIntosh, A M; Thompson, P M; Andreassen, O A |
Molecular psychiatry. |
26857596 |
2016 Dec; |
| ksRepo: a generalized platform for computational drug repositioning. |
Brown, Adam S; Kong, Sek Won; Kohane, Isaac S; Patel, Chirag J |
BMC bioinformatics. |
26860211 |
2016 Feb 09; |
| Durable Disease Control with MEK Inhibition in a Patient with NRAS-mutated Atypical Chronic Myeloid Leukemia. |
Khanna, Vishesh; Pierce, Scott T; Dao, Kim-Hien T; Tognon, Cristina E; Hunt, David E; Junio, Brian; Tyner, Jeffrey W; Druker, Brian J |
Cureus. |
26870618 |
2015 Dec 17; |
| Early developmental gene enhancers affect subcortical volumes in the adult human brain. |
Becker, Martin; Guadalupe, Tulio; Franke, Barbara; Hibar, Derrek P; Renteria, Miguel E; Stein, Jason L; Thompson, Paul M; Francks, Clyde; Vernes, Sonja C; Fisher, Simon E |
Human brain mapping. |
26890892 |
2016 May; |
| Barriers and Negative Nudges: Exploring Challenges in Food Journaling. |
Cordeiro, Felicia; Epstein, Daniel A; Thomaz, Edison; Bales, Elizabeth; Jagannathan, Arvind K; Abowd, Gregory D; Fogarty, James |
Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference. |
26894233 |
2015 Apr; |
| DataSpread: Unifying Databases and Spreadsheets. |
Bendre, Mangesh; Sun, Bofan; Zhang, Ding; Zhou, Xinyan; Chang, Kevin ChenChuan; Parameswaran, Aditya |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
26900487 |
2015 Aug; |
| Inferring causal molecular networks: empirical assessment through a community-based effort. |
Hill, Steven M; Heiser, Laura M; Cokelaer, Thomas; Unger, Michael; Nesser, Nicole K; Carlin, Daniel E; Zhang, Yang; Sokolov, Artem; Paull, Evan O; Wong, Chris K; Graim, Kiley; Bivol, Adrian; Wang, Haizhou; Zhu, Fan; Afsari, Bahman; Danilova, Ludmila V; Favorov, Alexander V; Lee, Wai Shing; Taylor, Dane; Hu, Chenyue W; Long, Byron L; Noren, David P; Bisberg, Alexander J; HPN-DREAM Consortium; Mills, Gordon B; Gray, Joe W; Kellen, Michael; Norman, Thea; Friend, Stephen; Qutub, Amina A; Fertig, Elana J; Guan, Yuanfang; Song, Mingzhou; Stuart, Joshua M; Spellman, Paul T; Koeppl, Heinz; Stolovitzky, Gustavo; Saez-Rodriguez, Julio; Mukherjee, Sach |
Nature methods. |
26901648 |
2016 Apr; |
| The Use of Behavior Change Techniques and Theory in Technologies for Cardiovascular Disease Prevention and Treatment in Adults: A Comprehensive Review. |
Winter, Sandra J; Sheats, Jylana L; King, Abby C |
Progress in cardiovascular diseases. |
26902519 |
2016 May-Jun; |
| Response to Dr Fried & Dr Kievit, and Dr Malhi et al. |
Schmaal, L; Veltman, D J; van Erp, T G M; Sämann, P G; Frodl, T; Jahanshad, N; Loehrer, E; Vernooij, M W; Niessen, W J; Ikram, M A; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Hoehn, D; Czisch, M; Lagopoulos, J; Hatton, S N; Hickie, I B; Goya-Maldonado, R; Krämer, B; Gruber, O; Couvy-Duchesne, B; Rentería, M E; Strike, L T; Wright, M J; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hall, G B; van Velzen, L S; van Tol, M-J; van der Wee, N J; Veer, I M; Walter, H; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; McIntosh, A M; Whalley, H C; Sussmann, J E; Godlewska, B R; Fischer, F H; Penninx, B W J H; Thompson, P M; Hibar, D P |
Molecular psychiatry. |
26903270 |
2016 06; |
| Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. |
Sweeney, Timothy E; Braviak, Lindsay; Tato, Cristina M; Khatri, Purvesh |
The Lancet. Respiratory medicine. |
26907218 |
2016 Mar; |
| Estimation and testing for multiple regulation of multivariate mixed outcomes. |
Agniel, Denis; Liao, Katherine P; Cai, Tianxi |
Biometrics. |
26910481 |
2016 Dec; |
| Guidelines for the functional annotation of microRNAs using the Gene Ontology. |
Huntley, Rachael P; Sitnikov, Dmitry; Orlic-Milacic, Marija; Balakrishnan, Rama; D'Eustachio, Peter; Gillespie, Marc E; Howe, Doug; Kalea, Anastasia Z; Maegdefessel, Lars; Osumi-Sutherland, David; Petri, Victoria; Smith, Jennifer R; Van Auken, Kimberly; Wood, Valerie; Zampetaki, Anna; Mayr, Manuel; Lovering, Ruth C |
RNA (New York, N.Y.). |
26917558 |
2016 May; |
| Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data. |
Dinov, Ivo D |
GigaScience. |
26918190 |
2016; |
| The Implicitome: A Resource for Rationalizing Gene-Disease Associations. |
Hettne, Kristina M; Thompson, Mark; van Haagen, Herman H H B M; van der Horst, Eelke; Kaliyaperumal, Rajaram; Mina, Eleni; Tatum, Zuotian; Laros, Jeroen F J; van Mulligen, Erik M; Schuemie, Martijn; Aten, Emmelien; Li, Tong Shu; Bruskiewich, Richard; Good, Benjamin M; Su, Andrew I; Kors, Jan A; den Dunnen, Johan; van Ommen, Gert-Jan B; Roos, Marco; 't Hoen, Peter A C; Mons, Barend; Schultes, Erik A |
PloS one. |
26919047 |
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| Sharing big biomedical data. |
Toga, Arthur W; Dinov, Ivo D |
Journal of big data. |
26929900 |
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| Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running. |
Uchida, Thomas K; Hicks, Jennifer L; Dembia, Christopher L; Delp, Scott L |
PloS one |
26930416 |
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| Enlarged striatal volume in adults with ADHD carrying the 9-6 haplotype of the dopamine transporter gene DAT1. |
Onnink, A Marten H; Franke, Barbara; van Hulzen, Kimm; Zwiers, Marcel P; Mostert, Jeanette C; Schene, Aart H; Heslenfeld, Dirk J; Oosterlaan, Jaap; Hoekstra, Pieter J; Hartman, Catharina A; Vasquez, Alejandro Arias; Kan, Cornelis C; Buitelaar, Jan; Hoogman, Martine |
Journal of neural transmission (Vienna, Austria : 1996). |
26935821 |
2016 Aug; |
| Health and population effects of rare gene knockouts in adult humans with related parents. |
Narasimhan, Vagheesh M; Hunt, Karen A; Mason, Dan; Baker, Christopher L; Karczewski, Konrad J; Barnes, Michael R; Barnett, Anthony H; Bates, Chris; Bellary, Srikanth; Bockett, Nicholas A; Giorda, Kristina; Griffiths, Christopher J; Hemingway, Harry; Jia, Zhilong; Kelly, M Ann; Khawaja, Hajrah A; Lek, Monkol; McCarthy, Shane; McEachan, Rosie; O'Donnell-Luria, Anne; Paigen, Kenneth; Parisinos, Constantinos A; Sheridan, Eamonn; Southgate, Laura; Tee, Louise; Thomas, Mark; Xue, Yali; Schnall-Levin, Michael; Petkov, Petko M; Tyler-Smith, Chris; Maher, Eamonn R; Trembath, Richard C; MacArthur, Daniel G; Wright, John; Durbin, Richard; van Heel, David A |
Science (New York, N.Y.). |
26940866 |
2016 Apr 22; |
| Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models. |
Sul, Jae Hoon; Bilow, Michael; Yang, Wen-Yun; Kostem, Emrah; Furlotte, Nick; He, Dan; Eskin, Eleazar |
PLoS genetics |
26943367 |
2016 Mar |
| Data publication with the structural biology data grid supports live analysis. |
Meyer, Peter A; Socias, Stephanie; Key, Jason; Ransey, Elizabeth; Tjon, Emily C; Buschiazzo, Alejandro; Lei, Ming; Botka, Chris; Withrow, James; Neau, David; Rajashankar, Kanagalaghatta; Anderson, Karen S; Baxter, Richard H; Blacklow, Stephen C; Boggon, Titus J; Bonvin, Alexandre M J J; Borek, Dominika; Brett, Tom J; Caflisch, Amedeo; Chang, Chung-I; Chazin, Walter J; Corbett, Kevin D; Cosgrove, Michael S; Crosson, Sean; Dhe-Paganon, Sirano; Di Cera, Enrico; Drennan, Catherine L; Eck, Michael J; Eichman, Brandt F; Fan, Qing R; Ferré-D'Amaré, Adrian R; Fromme, J Christopher; Garcia, K Christopher; Gaudet, Rachelle; Gong, Peng; Harrison, Stephen C; Heldwein, Ekaterina E; Jia, Zongchao; Keenan, Robert J; Kruse, Andrew C; Kvansakul, Marc; McLellan, Jason S; Modis, Yorgo; Nam, Yunsun; Otwinowski, Zbyszek; Pai, Emil F; Pereira, Pedro José Barbosa; Petosa, Carlo; Raman, C S; Rapoport, Tom A; Roll-Mecak, Antonina; Rosen, Michael K; Rudenko, Gabby; Schlessinger, Joseph; Schwartz, Thomas U; Shamoo, Yousif; Sondermann, Holger; Tao, Yizhi J; Tolia, Niraj H; Tsodikov, Oleg V; Westover, Kenneth D; Wu, Hao; Foster, Ian; Fraser, James S; Maia, Filipe R N C; Gonen, Tamir; Kirchhausen, Tom; Diederichs, Kay; Crosas, Mercè; Sliz, Piotr |
Nature communications. |
26947396 |
2016 Mar 07; |
| Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution. |
Gasch, Audrey P; Hose, James; Newton, Michael A; Sardi, Maria; Yong, Mun; Wang, Zhishi |
eLife. |
26949252 |
2016; |
| Electrophysiological Endophenotypes for Schizophrenia. |
Owens, Emily M; Bachman, Peter; Glahn, David C; Bearden, Carrie E |
Harvard review of psychiatry. |
26954597 |
2016 Mar-Apr; |
| Age, APOE and sex: Triad of risk of Alzheimer's disease. |
Riedel, Brandalyn C; Thompson, Paul M; Brinton, Roberta Diaz |
The Journal of steroid biochemistry and molecular biology. |
26969397 |
2016 Jun; |
| Calponin isoforms CNN1, CNN2 and CNN3: Regulators for actin cytoskeleton functions in smooth muscle and non-muscle cells. |
Liu, Rong; Jin, J-P |
Gene. |
26970176 |
2016 Jul 01; |
| The effect of increased genetic risk for Alzheimer's disease on hippocampal and amygdala volume. |
Lupton, Michelle K; Strike, Lachlan; Hansell, Narelle K; Wen, Wei; Mather, Karen A; Armstrong, Nicola J; Thalamuthu, Anbupalam; McMahon, Katie L; de Zubicaray, Greig I; Assareh, Amelia A; Simmons, Andrew; Proitsi, Petroula; Powell, John F; Montgomery, Grant W; Hibar, Derrek P; Westman, Eric; Tsolaki, Magda; Kloszewska, Iwona; Soininen, Hilkka; Mecocci, Patrizia; Velas, Bruno; Lovestone, Simon; Alzheimer's Disease Neuroimaging Initiative; Brodaty, Henry; Ames, David; Trollor, Julian N; Martin, Nicholas G; Thompson, Paul M; Sachdev, Perminder S; Wright, Margaret J |
Neurobiology of aging. |
26973105 |
2016 Apr; |
| Delving into Egocentric Actions. |
Li, Yin; Ye, Zhefan; Rehg, James M |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
26973427 |
2015 Jun; |
| Gaze-enabled Egocentric Video Summarization via Constrained Submodular Maximization. |
Xut, Jia; Mukherjee, Lopamudra; Li, Yin; Warner, Jamieson; Rehg, James M; Singht, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
26973428 |
2015 Jun; |
| Manifold-valued Dirichlet Processes. |
Kim, Hyunwoo J; Xu, Jia; Vemuri, Baba C; Singh, Vikas |
Proceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning. |
26973982 |
2015 Jul; |
| NetDecoder: a network biology platform that decodes context-specific biological networks and gene activities. |
da Rocha, Edroaldo Lummertz; Ung, Choong Yong; McGehee, Cordelia D; Correia, Cristina; Li, Hu |
Nucleic acids research |
26975659 |
2016 Jun 02 |
| A large dataset of protein dynamics in the mammalian heart proteome. |
Lau, Edward; Cao, Quan; Ng, Dominic C M; Bleakley, Brian J; Dincer, T Umut; Bot, Brian M; Wang, Ding; Liem, David A; Lam, Maggie P Y; Ge, Junbo; Ping, Peipei |
Scientific data. |
26977904 |
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| Wikidata as a semantic framework for the Gene Wiki initiative. |
Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Mitraka, Elvira; Turner, Julia; Putman, Tim; Leong, Justin; Naik, Chinmay; Pavlidis, Paul; Schriml, Lynn; Good, Benjamin M; Su, Andrew I |
Database : the journal of biological databases and curation |
26989148 |
2016 |
| Statistical Inference Models for Image Datasets with Systematic Variations. |
Kim, Won Hwa; Bendlin, Barbara B; Chung, Moo K; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
26989336 |
2015 Jun; |
| Tensor factorization toward precision medicine. |
Luo, Yuan; Wang, Fei; Szolovits, Peter |
Briefings in bioinformatics. |
26994614 |
2017 05 01; |
| A history of breast cancer and older age allow risk stratification of mammographic BI-RADS 3 ratings in the diagnostic setting. |
Benndorf, Matthias; Wu, Yirong; Burnside, Elizabeth S |
Clinical imaging. |
26995570 |
2016 Mar-Apr; |
| Volume and Value of Big Healthcare Data. |
Dinov, Ivo D |
Journal of medical statistics and informatics. |
26998309 |
2016; |
| A role for the bacterial GATC methylome in antibiotic stress survival. |
Cohen, Nadia R; Ross, Christian A; Jain, Saloni; Shapiro, Rebecca S; Gutierrez, Arnaud; Belenky, Peter; Li, Hu; Collins, James J |
Nature genetics. |
26998690 |
2016 05; |
| Identifying predictive markers for personalized treatment selection. |
Shen, Yuanyuan; Cai, Tianxi |
Biometrics. |
26999054 |
2016 Dec; |
| Neural basis of reward anticipation and its genetic determinants. |
Jia, Tianye; Macare, Christine; Desrivières, Sylvane; Gonzalez, Dante A; Tao, Chenyang; Ji, Xiaoxi; Ruggeri, Barbara; Nees, Frauke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Dove, Rachel; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Lemaitre, Hervé; Martinot, Jean-Luc; Paus, Tomá?; Pausova, Zdenka; Poline, Jean-Baptiste; Rietschel, Marcella; Robbins, Trevor; Smolka, Michael N; Müller, Christian P; Feng, Jianfeng; Rothenfluh, Adrian; Flor, Herta; Schumann, Gunter; IMAGEN Consortium |
Proceedings of the National Academy of Sciences of the United States of America. |
27001827 |
2016 Apr 05; |
| Pathway analysis in attention deficit hyperactivity disorder: An ensemble approach. |
Mooney, Michael A; McWeeney, Shannon K; Faraone, Stephen V; Hinney, Anke; Hebebrand, Johannes; IMAGE2 Consortium; German ADHD GWAS Group; Nigg, Joel T; Wilmot, Beth |
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. |
27004716 |
2016 Sep; |
| Heritability and genetic correlation between the cerebral cortex and associated white matter connections. |
Shen, Kai-Kai; Doré, Vincent; Rose, Stephen; Fripp, Jurgen; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Thompson, Paul M; Wright, Margaret J; Salvado, Olivier |
Human brain mapping. |
27006297 |
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| Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics. |
Lavallée-Adam, Mathieu; Yates 3rd, John R |
Current protocols in bioinformatics. |
27010334 |
2016 Mar 24; |
| Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies. |
Rahmani, Elior; Zaitlen, Noah; Baran, Yael; Eng, Celeste; Hu, Donglei; Galanter, Joshua; Oh, Sam; Burchard, Esteban G; Eskin, Eleazar; Zou, James; Halperin, Eran |
Nature methods. |
27018579 |
2016 May; |
| Efficient Learning of Continuous-Time Hidden Markov Models for Disease Progression. |
Liu, Yu-Ying; Li, Shuang; Li, Fuxin; Song, Le; Rehg, James M |
Advances in neural information processing systems. |
27019571 |
2015; |
| Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. |
Putman, Tim E; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Wu, Chunlei; Su, Andrew I; Good, Benjamin M |
Database : the journal of biological databases and curation |
27022157 |
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| Autism spectrum disorder and attention-deficit/hyperactivity disorder in early childhood: A review of unique and shared characteristics and developmental antecedents. |
Visser, Janne C; Rommelse, Nanda N J; Greven, Corina U; Buitelaar, Jan K |
Neuroscience and biobehavioral reviews. |
27026637 |
2016 06; |
| Long-read sequence assembly of the gorilla genome. |
Gordon, David; Huddleston, John; Chaisson, Mark J P; Hill, Christopher M; Kronenberg, Zev N; Munson, Katherine M; Malig, Maika; Raja, Archana; Fiddes, Ian; Hillier, LaDeana W; Dunn, Christopher; Baker, Carl; Armstrong, Joel; Diekhans, Mark; Paten, Benedict; Shendure, Jay; Wilson, Richard K; Haussler, David; Chin, Chen-Shan; Eichler, Evan E |
Science (New York, N.Y.). |
27034376 |
2016 Apr 01; |
| Mining Multi-Aspect Reflection of News Events in Twitter: Discovery, Linking and Presentation. |
Wang, Jingjing; Tong, Wenzhu; Yu, Hongkun; Li, Min; Ma, Xiuli; Cai, Haoyan; Hanratty, Tim; Han, Jiawei |
Proceedings. IEEE International Conference on Data Mining. |
27034625 |
2015 Nov; |
| KnowSim: A Document Similarity Measure on Structured Heterogeneous Information Networks. |
Wang, Chenguang; Song, Yangqiu; Li, Haoran; Zhang, Ming; Han, Jiawei |
Proceedings. IEEE International Conference on Data Mining. |
27034626 |
2015 Nov; |
| Multiple testing correction in linear mixed models. |
Joo, Jong Wha J; Hormozdiari, Farhad; Han, Buhm; Eskin, Eleazar |
Genome biology |
27039378 |
2016 Apr 01 |
| CIDER: Enabling Robustness-Power Tradeoffs on a Computational Eyeglass. |
Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Ganesan, Deepak; Marlin, Benjamin; Salthouse, Christopher |
Proceedings of the ... annual International Conference on Mobile Computing and Networking. International Conference on Mobile Computing and Networking. |
27042165 |
2015 Sep; |
| On Statistical Analysis of Neuroimages with Imperfect Registration. |
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Proceedings. IEEE International Conference on Computer Vision. |
27042168 |
2015 Dec; |
| Interpolation on the manifold of K component GMMs. |
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Proceedings. IEEE International Conference on Computer Vision. |
27042169 |
2015 Dec; |
| Brainhack: a collaborative workshop for the open neuroscience community. |
Cameron Craddock, R; S Margulies, Daniel; Bellec, Pierre; Nolan Nichols, B; Alcauter, Sarael; A Barrios, Fernando; Burnod, Yves; J Cannistraci, Christopher; Cohen-Adad, Julien; De Leener, Benjamin; Dery, Sebastien; Downar, Jonathan; Dunlop, Katharine; R Franco, Alexandre; Seligman Froehlich, Caroline; J Gerber, Andrew; S Ghosh, Satrajit; J Grabowski, Thomas; Hill, Sean; Sólon Heinsfeld, Anibal; Matthew Hutchison, R; Kundu, Prantik; R Laird, Angela; Liew, Sook-Lei; J Lurie, Daniel; G McLaren, Donald; Meneguzzi, Felipe; Mennes, Maarten; Mesmoudi, Salma; O'Connor, David; H Pasaye, Erick; Peltier, Scott; Poline, Jean-Baptiste; Prasad, Gautam; Fraga Pereira, Ramon; Quirion, Pierre-Olivier; Rokem, Ariel; S Saad, Ziad; Shi, Yonggang; C Strother, Stephen; Toro, Roberto; Q Uddin, Lucina; D Van Horn, John; W Van Meter, John; C Welsh, Robert; Xu, Ting |
GigaScience. |
27042293 |
2016; |
| Adolescent behavioral and neural reward sensitivity: a test of the differential susceptibility theory. |
Richards, J S; Arias Vásquez, A; von Rhein, D; van der Meer, D; Franke, B; Hoekstra, P J; Heslenfeld, D J; Oosterlaan, J; Faraone, S V; Buitelaar, J K; Hartman, C A |
Translational psychiatry. |
27045841 |
2016 Apr 05; |
| Design and computational analysis of single-cell RNA-sequencing experiments. |
Bacher, Rhonda; Kendziorski, Christina |
Genome biology. |
27052890 |
2016 Apr 07; |
| Systematic correlation of environmental exposure and physiological and self-reported behaviour factors with leukocyte telomere length. |
Patel, Chirag J; Manrai, Arjun K; Corona, Erik; Kohane, Isaac S |
International journal of epidemiology. |
27059547 |
2016 Apr 8; |
| Query-Based Outlier Detection in Heterogeneous Information Networks. |
Kuck, Jonathan; Zhuang, Honglei; Yan, Xifeng; Cam, Hasan; Han, Jiawei |
Advances in database technology : proceedings. International Conference on Extending Database Technology. |
27064397 |
2015 Mar; |
| Influence of APOE Genotype on Hippocampal Atrophy over Time - An N=1925 Surface-Based ADNI Study. |
Li, Bolun; Shi, Jie; Gutman, Boris A; Baxter, Leslie C; Thompson, Paul M; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative |
PloS one. |
27065111 |
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| ExpertBayes: Automatically refining manually built Bayesian networks. |
Almeida, Ezilda; Ferreira, Pedro; Vinhoza, Tiago; Dutra, Inês; Li, Jingwei; Wu, Yirong; Burnside, Elizabeth |
Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications. |
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2014 Dec; |
| Effect of Electroconvulsive Therapy on Striatal Morphometry in Major Depressive Disorder. |
Wade, Benjamin S C; Joshi, Shantanu H; Njau, Stephanie; Leaver, Amber M; Vasavada, Megha; Woods, Roger P; Gutman, Boris A; Thompson, Paul M; Espinoza, Randall; Narr, Katherine L |
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
27067127 |
2016 09; |
| Ventral Striatum Connectivity During Reward Anticipation in Adolescent Smokers. |
Jollans, Lee; Zhipeng, Cao; Icke, Ilknur; Greene, Ciara; Kelly, Clare; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Whelan, Robert |
Developmental neuropsychology. |
27074029 |
2016 Jan-Mar; |
| Mesochronal Structure Learning. |
Plis, Sergey; Danks, David; Yang, Jianyu |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
27076793 |
2015 Jul 12; |
| Donor Retention in Online Crowdfunding Communities: A Case Study of DonorsChoose.org. |
Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
27077139 |
2015 May; |
| Machine Reading for Extraction of Bacteria and Habitat Taxonomies. |
Kordjamshidi, Parisa; Massa, Wouter; Provoost, Thomas; Moens, Marie-Francine |
Biomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference). |
27077141 |
2015 Jan; |
| Ringo: Interactive Graph Analytics on Big-Memory Machines. |
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Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
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Bioinformatics (Oxford, England). |
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The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. |
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Advances in neural information processing systems. |
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Nature reviews. Disease primers. |
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Applied informatics. |
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PLoS computational biology. |
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| MMP-9 signaling in the left ventricle following myocardial infarction. |
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American journal of physiology. Heart and circulatory physiology. |
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Journal of genetics and genomics = Yi chuan xue bao. |
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IEEE signal processing magazine. |
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PloS one. |
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Journal of acquired immune deficiency syndromes (1999). |
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| A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions. |
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Genome biology. |
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Proceedings. IEEE International Conference on Data Mining. |
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Statistical methods in medical research. |
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Proceedings of SPIE--the International Society for Optical Engineering. |
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Advances in neural information processing systems. |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
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American journal of human genetics. |
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| Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium. |
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Bioinformatics (Oxford, England). |
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Bioinformatics (Oxford, England). |
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| PRKCE gene encoding protein kinase C-epsilon-Dual roles at sarcomeres and mitochondria in cardiomyocytes. |
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Philosophy of science. |
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Proceedings of the Fourth Workshop on Data analytics at sCale (DanaC 2015) : May 31st, 2015, Melbourne, Australia. Workshop on Data Analytics in the Cloud (4th : 2015 : Melbourne, Vic.). |
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Molecular biology and evolution. |
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Advances in neural information processing systems. |
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| A Utility/Cost Analysis of Breast Cancer Risk Prediction Algorithms. |
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Proceedings of SPIE--the International Society for Optical Engineering. |
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| Identification of Gene Loci That Overlap Between Schizophrenia and Educational Attainment. |
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| A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis. |
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PLoS computational biology. |
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PloS one. |
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| Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems. |
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| CVXPY: A Python-Embedded Modeling Language for Convex Optimization. |
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Journal of machine learning research : JMLR. |
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| Using the laws of thermodynamics to understand how matrix metalloproteinases coordinate the myocardial response to injury. |
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Genome biology. |
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| Mapping Murine Corneal Neovascularization and Weight Loss Virulence Determinants in the Herpes Simplex Virus 1 Genome and the Detection of an Epistatic Interaction between the UL and IRS/US Regions. |
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Journal of virology. |
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Journal of biomedical informatics. |
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Proceedings - International Conference on Software Engineering. International Conference on Software Engineering. |
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IEEE transactions on bio-medical engineering. |
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| Environment-Wide Association Study of Blood Pressure in the National Health and Nutrition Examination Survey (1999-2012). |
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Scientific reports. |
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| Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability. |
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Developmental biology. |
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Neuropsychologia. |
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| Heterochronicity of white matter development and aging explains regional patient control differences in schizophrenia. |
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Human brain mapping. |
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| Efficient Queries of Stand-off Annotations for Natural Language Processing on Electronic Medical Records. |
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Biomedical informatics insights. |
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Circulation. |
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2016 Aug 02; |
| KCNE4 and KCNE5: K(+) channel regulation and cardiac arrhythmogenesis. |
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Gene. |
27484720 |
2016 Nov 30; |
| Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. |
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Journal of proteome research. |
27487407 |
2016 Nov 04; |
| Prioritizing individual genetic variants after kernel machine testing using variable selection. |
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Genetic epidemiology. |
27488097 |
2016 Dec; |
| Quantifying patterns of brain activity: Distinguishing unaffected siblings from participants with ADHD and healthy individuals. |
Wolfers, Thomas; van Rooij, Daan; Oosterlaan, Jaap; Heslenfeld, Dirk; Hartman, Catharina A; Hoekstra, Pieter J; Beckmann, Christian F; Franke, Barbara; Buitelaar, Jan K; Marquand, Andre F |
NeuroImage. Clinical. |
27489770 |
2016; |
| Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. |
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Journal of proteome research. |
27490519 |
2016 Nov 04; |
| Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations. |
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PloS one. |
27494614 |
2016; |
| Apolipoprotein A5 fifteen years anniversary: Lessons from genetic epidemiology. |
Hubacek, Jaroslav A |
Gene. |
27496343 |
2016 Oct 30; |
| MORPHOMETRIC ANALYSIS OF HIPPOCAMPUS AND LATERAL VENTRICLE REVEALS REGIONAL DIFFERENCE BETWEEN COGNITIVELY STABLE AND DECLINING PERSONS. |
Zhang, Wen; Shi, Jie; Stonnington, Cynthia; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Thompson, Paul M; Reiman, Eric M; Caselli, Richard J; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
27499828 |
2016 Apr; |
| APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE. |
Zhang, Jie; Stonnington, Cynthia; Li, Qingyang; Shi, Jie; Bauer 3rd, Robert J; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
27499829 |
2016 Apr; |
| Blockwise Human Brain Network Visual Comparison Using NodeTrix Representation. |
Yang, Xinsong; Shi, Lei; Daianu, Madelaine; Tong, Hanghang; Liu, Qingsong; Thompson, Paul |
IEEE transactions on visualization and computer graphics. |
27514058 |
2017 Jan; |
| Defining the sham environment for post-myocardial infarction studies in mice. |
Iyer, Rugmani Padmanabhan; de Castro Brás, Lisandra E; Cannon, Presley L; Ma, Yonggang; DeLeon-Pennell, Kristine Y; Jung, Mira; Flynn, Elizabeth R; Henry, Jeffrey B; Bratton, Dustin R; White, Jared A; Fulton, Linda K; Grady, Andrew W; Lindsey, Merry L |
American journal of physiology. Heart and circulatory physiology |
27521418 |
2016 Sep 01 |
| Leveraging Citizen Science and Information Technology for Population Physical Activity Promotion. |
King, Abby C; Winter, Sandra J; Sheats, Jylana L; Rosas, Lisa G; Buman, Matthew P; Salvo, Deborah; Rodriguez, Nicole M; Seguin, Rebecca A; Moran, Mika; Garber, Randi; Broderick, Bonnie; Zieff, Susan G; Sarmiento, Olga Lucia; Gonzalez, Silvia A; Banchoff, Ann; Dommarco, Juan Rivera |
Translational journal of the American College of Sports Medicine. |
27525309 |
2016 May 15; |
| A comprehensive and scalable database search system for metaproteomics. |
Chatterjee, Sandip; Stupp, Gregory S; Park, Sung Kyu Robin; Ducom, Jean-Christophe; Yates 3rd, John R; Su, Andrew I; Wolan, Dennis W |
BMC genomics. |
27528457 |
2016 08 16; |
| Statistical detection of geographic clusters of resistant Escherichia coli in a regional network with WHONET and SaTScan. |
Park, Rachel; O'Brien, Thomas F; Huang, Susan S; Baker, Meghan A; Yokoe, Deborah S; Kulldorff, Martin; Barrett, Craig; Swift, Jamie; Stelling, John; Centers for Disease Control and Prevention Epicenters Program |
Expert review of anti-infective therapy. |
27530311 |
2016 11; |
| Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. |
Walsh, Roddy; Thomson, Kate L; Ware, James S; Funke, Birgit H; Woodley, Jessica; McGuire, Karen J; Mazzarotto, Francesco; Blair, Edward; Seller, Anneke; Taylor, Jenny C; Minikel, Eric V; Exome Aggregation Consortium; MacArthur, Daniel G; Farrall, Martin; Cook, Stuart A; Watkins, Hugh |
Genetics in medicine : official journal of the American College of Medical Genetics. |
27532257 |
2017 02; |
| Patterns of genic intolerance of rare copy number variation in 59,898 human exomes. |
Ruderfer, Douglas M; Hamamsy, Tymor; Lek, Monkol; Karczewski, Konrad J; Kavanagh, David; Samocha, Kaitlin E; Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel G; Fromer, Menachem; Purcell, Shaun M |
Nature genetics. |
27533299 |
2016 Oct; |
| Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. |
Chu, Li-Fang; Leng, Ning; Zhang, Jue; Hou, Zhonggang; Mamott, Daniel; Vereide, David T; Choi, Jeea; Kendziorski, Christina; Stewart, Ron; Thomson, James A |
Genome biology. |
27534536 |
2016 Aug 17; |
| Analysis of protein-coding genetic variation in 60,706 humans. |
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Nature. |
27535533 |
2016 08 18; |
| Integration of 60,000 exomes and ACMG guidelines question the role of Catecholaminergic Polymorphic Ventricular Tachycardia-associated variants. |
Paludan-Müller, C; Ahlberg, G; Ghouse, J; Herfelt, C; Svendsen, J H; Haunsø, S; Kanters, J K; Olesen, M S |
Clinical genetics. |
27538377 |
2017 01; |
| Predicting Social Anxiety Treatment Outcome Based on Therapeutic Email Conversations. |
Hoogendoorn, Mark; Berger, Thomas; Schulz, Ava; Stolz, Timo; Szolovits, Peter |
IEEE journal of biomedical and health informatics. |
27542187 |
2017 Sep; |
| Making a meaningful impact: modelling simultaneous frictional collisions in spatial multibody systems. |
Uchida, Thomas K; Sherman, Michael A; Delp, Scott L |
Proceedings. Mathematical, physical, and engineering sciences. |
27547093 |
2015 May 08; |
| Structural asymmetries of the human cerebellum in relation to cerebral cortical asymmetries and handedness. |
Kavaklioglu, Tulya; Guadalupe, Tulio; Zwiers, Marcel; Marquand, Andre F; Onnink, Marten; Shumskaya, Elena; Brunner, Han; Fernandez, Guillen; Fisher, Simon E; Francks, Clyde |
Brain structure & function. |
27566607 |
2016 Aug 26; |
| Making the cut: improved ranking and selection for large-scale inference. |
Henderson, Nicholas C; Newton, Michael A |
Journal of the Royal Statistical Society. Series B, Statistical methodology. |
27570475 |
2016 Sep; |
| Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress. |
Papale, Ligia A; Li, Sisi; Madrid, Andy; Zhang, Qi; Chen, Li; Chopra, Pankaj; Jin, Peng; Kele?, Sündüz; Alisch, Reid S |
Neurobiology of disease. |
27576189 |
2016 Dec; |
| Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics. |
Deutsch, Eric W; Sun, Zhi; Campbell, David S; Binz, Pierre-Alain; Farrah, Terry; Shteynberg, David; Mendoza, Luis; Omenn, Gilbert S; Moritz, Robert L |
Journal of proteome research. |
27577934 |
2016 Nov 04; |
| Overview of the interactive task in BioCreative V. |
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Database : the journal of biological databases and curation. |
27589961 |
2016; |
| Distinct Subcortical Volume Alterations in Pediatric and Adult OCD: A Worldwide Meta- and Mega-Analysis. |
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The American journal of psychiatry. |
27609241 |
2017 01 01; |
| Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates. |
Sievers, Chelsie K; Zou, Luli S; Pickhardt, Perry J; Matkowskyj, Kristina A; Albrecht, Dawn M; Clipson, Linda; Bacher, Jeffery W; Pooler, B Dustin; Moawad, Fouad J; Cash, Brooks D; Reichelderfer, Mark; Vo, Tien N; Newton, Michael A; Larget, Bret R; Halberg, Richard B |
Gut. |
27609830 |
2016 Sep 08; |
| Perspective: Beyond the genome. |
Leppert, John; Patel, Chirag |
Nature. |
27626778 |
2016 09 15; |
| Surrogate-assisted feature extraction for high-throughput phenotyping. |
Yu, Sheng; Chakrabortty, Abhishek; Liao, Katherine P; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi |
Journal of the American Medical Informatics Association : JAMIA. |
27632993 |
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| Ruminative brooding is associated with salience network coherence in early pubertal youth. |
Ordaz, Sarah J; LeMoult, Joelle; Colich, Natalie L; Prasad, Gautam; Pollak, Madeline; Popolizio, Morgan; Price, Alexandra; Greicius, Michael; Gotlib, Ian H |
Social cognitive and affective neuroscience. |
27633394 |
2017 Feb 01; |
| Methods to increase reproducibility in differential gene expression via meta-analysis. |
Sweeney, Timothy E; Haynes, Winston A; Vallania, Francesco; Ioannidis, John P; Khatri, Purvesh |
Nucleic acids research. |
27634930 |
2017 01 09; |
| Cerebral amyloid is associated with greater white-matter hyperintensity accrual in cognitively normal older adults. |
Scott, Julia A; Braskie, Meredith N; Tosun, Duygu; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNI |
Neurobiology of aging. |
27639120 |
2016 12; |
| Conformal invariants for multiply connected surfaces: Application to landmark curve-based brain morphometry analysis. |
Shi, Jie; Zhang, Wen; Tang, Miao; Caselli, Richard J; Wang, Yalin |
Medical image analysis. |
27639215 |
2017 Jan; |
| Adapting extracellular matrix proteomics for clinical studies on cardiac remodeling post-myocardial infarction. |
Lindsey, Merry L; Hall, Michael E; Harmancey, Romain; Ma, Yonggang |
Clinical proteomics. |
27651752 |
2016; |
| Actigraphy features for predicting mobility disability in older adults. |
Kheirkhahan, Matin; Tudor-Locke, Catrine; Axtell, Robert; Buman, Matthew P; Fielding, Roger A; Glynn, Nancy W; Guralnik, Jack M; King, Abby C; White, Daniel K; Miller, Michael E; Siddique, Juned; Brubaker, Peter; Rejeski, W Jack; Ranshous, Stephen; Pahor, Marco; Ranka, Sanjay; Manini, Todd M |
Physiological measurement. |
27653966 |
2016 Sep 21; |
| Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running. |
Uchida, Thomas K; Seth, Ajay; Pouya, Soha; Dembia, Christopher L; Hicks, Jennifer L; Delp, Scott L |
PloS one. |
27656901 |
2016; |
| Just-in-Time Adaptive Interventions (JITAIs) in Mobile Health: Key Components and Design Principles for Ongoing Health Behavior Support. |
Nahum-Shani, Inbal; Smith, Shawna N; Spring, Bonnie J; Collins, Linda M; Witkiewitz, Katie; Tewari, Ambuj; Murphy, Susan A |
Annals of behavioral medicine : a publication of the Society of Behavioral Medicine. |
27663578 |
2016 Sep 23; |
| Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications. |
Tao, Chenyang; Nichols, Thomas E; Hua, Xue; Ching, Christopher R K; Rolls, Edmund T; Thompson, Paul M; Feng, Jianfeng; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
27666385 |
2017 Jan 01; |
| Quantitative magnetic resonance imaging traits as endophenotypes for genetic mapping in epilepsy. |
Alhusaini, Saud; Whelan, Christopher D; Sisodiya, Sanjay M; Thompson, Paul M |
NeuroImage. Clinical. |
27672556 |
2016; |
| MeSHDD: Literature-based drug-drug similarity for drug repositioning. |
Brown, Adam S; Patel, Chirag J |
Journal of the American Medical Informatics Association : JAMIA. |
27678460 |
2016 Sep 27; |
| Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. |
Zerbino, Daniel R; Ballinger, Tracy; Paten, Benedict; Hickey, Glenn; Haussler, David |
BMC bioinformatics. |
27687569 |
2016 Sep 29; |
| Phase i trials in melanoma: A framework to translate preclinical findings to the clinic. |
Kim, Eunjung; Rebecca, Vito W; Smalley, Keiran S M; Anderson, Alexander R A |
European journal of cancer (Oxford, England : 1990). |
27689717 |
2016 Nov; |
| Novel genetic loci underlying human intracranial volume identified through genome-wide association. |
Adams, Hieab H H (see original citation for additional authors) |
Nature neuroscience. |
27694991 |
2016 12; |
| Ultra-rare disruptive and damaging mutations influence educational attainment in the general population. |
Ganna, Andrea; Genovese, Giulio; Howrigan, Daniel P; Byrnes, Andrea; Kurki, Mitja; Zekavat, Seyedeh M; Whelan, Christopher W; Kals, Mart; Nivard, Michel G; Bloemendal, Alex; Bloom, Jonathan M; Goldstein, Jacqueline I; Poterba, Timothy; Seed, Cotton; Handsaker, Robert E; Natarajan, Pradeep; Mägi, Reedik; Gage, Diane; Robinson, Elise B; Metspalu, Andres; Salomaa, Veikko; Suvisaari, Jaana; Purcell, Shaun M; Sklar, Pamela; Kathiresan, Sekar; Daly, Mark J; McCarroll, Steven A; Sullivan, Patrick F; Palotie, Aarno; Esko, Tõnu; Hultman, Christina; Neale, Benjamin M |
Nature neuroscience. |
27694993 |
2016 12; |
| A regulatory circuit of miR-125b/miR-20b and Wnt signalling controls glioblastoma phenotypes through FZD6-modulated pathways. |
Huang, Tianzhi; Alvarez, Angel A; Pangeni, Rajendra P; Horbinski, Craig M; Lu, Songjian; Kim, Sung-Hak; James, C David; J Raizer, Jeffery; A Kessler, John; Brenann, Cameron W; Sulman, Erik P; Finocchiaro, Gaetano; Tan, Ming; Nishikawa, Ryo; Lu, Xinghua; Nakano, Ichiro; Hu, Bo; Cheng, Shi-Yuan |
Nature communications. |
27698350 |
2016 10 04; |
| Partitioning heritability analysis reveals a shared genetic basis of brain anatomy and schizophrenia. |
Lee, P H; Baker, J T; Holmes, A J; Jahanshad, N; Ge, T; Jung, J-Y; Cruz, Y; Manoach, D S; Hibar, D P; Faskowitz, J; McMahon, K L; de Zubicaray, G I; Martin, N H; Wright, M J; Öngür, D; Buckner, R; Roffman, J; Thompson, P M; Smoller, J W |
Molecular psychiatry. |
27725656 |
2016 Dec; |
| Molecular Autopsy for Sudden Unexpected Death. |
Torkamani, Ali; Muse, Evan D; Spencer, Emily G; Rueda, Manuel; Wagner, Glenn N; Lucas, Jonathan R; Topol, Eric J |
JAMA. |
27727376 |
2016 Oct 11; |
| Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex. |
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Brain imaging and behavior. |
27738994 |
2017 Oct; |
| Early matrix metalloproteinase-9 inhibition post-myocardial infarction worsens cardiac dysfunction by delaying inflammation resolution. |
Iyer, Rugmani Padmanabhan; de Castro Brás, Lisandra E; Patterson, Nicolle L; Bhowmick, Manishabrata; Flynn, Elizabeth R; Asher, Majdouline; Cannon, Presley L; Deleon-Pennell, Kristine Y; Fields, Gregg B; Lindsey, Merry L |
Journal of molecular and cellular cardiology. |
27746126 |
2016 Nov; |
| Exome chip analyses in adult attention deficit hyperactivity disorder. |
Zayats, T; Jacobsen, K K; Kleppe, R; Jacob, C P; Kittel-Schneider, S; Ribasés, M; Ramos-Quiroga, J A; Richarte, V; Casas, M; Mota, N R; Grevet, E H; Klein, M; Corominas, J; Bralten, J; Galesloot, T; Vasquez, A A; Herms, S; Forstner, A J; Larsson, H; Breen, G; Asherson, P; Gross-Lesch, S; Lesch, K P; Cichon, S; Gabrielsen, M B; Holmen, O L; Bau, C H D; Buitelaar, J; Kiemeney, L; Faraone, S V; Cormand, B; Franke, B; Reif, A; Haavik, J; Johansson, S |
Translational psychiatry. |
27754487 |
2016 10 18; |
| Signal-Oriented Pathway Analyses Reveal a Signaling Complex as a Synthetic Lethal Target for p53 Mutations. |
Lu, Songjian; Cai, Chunhui; Yan, Gonghong; Zhou, Zhuan; Wan, Yong; Chen, Vicky; Chen, Lujia; Cooper, Gregory F; Obeid, Lina M; Hannun, Yusuf A; Lee, Adrian V; Lu, Xinghua |
Cancer research. |
27758891 |
2016 Dec 01; |
| Publicly Available Data Provide Evidence against NR1H3 R415Q Causing Multiple Sclerosis. |
Minikel, Eric Vallabh; MacArthur, Daniel G |
Neuron. |
27764668 |
2016 Oct 19; |
| Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data. |
Kang, Eun Yong; Martin, Lisa; Mangul, Serghei; Isvilanonda, Warin; Zou, Jennifer; Ben-David, Eyal; Han, Buhm; Lusis, Aldons J; Shifman, Sagiv; Eskin, Eleazar |
Genetics. |
27765809 |
2016 Oct 07; |
| Causal Clustering for 1-Factor Measurement Models. |
Kummerfeld, Erich; Ramsey, Joseph |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
27766182 |
2016; |
| Computational pan-genomics: status, promises and challenges. |
Computational Pan-Genomics Consortium |
Briefings in bioinformatics. |
27769991 |
2016 Oct 21; |
| A database of human exposomes and phenomes from the US National Health and Nutrition Examination Survey. |
Patel, Chirag J; Pho, Nam; McDuffie, Michael; Easton-Marks, Jeremy; Kothari, Cartik; Kohane, Isaac S; Avillach, Paul |
Scientific data. |
27779619 |
2016 10 25; |
| A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. |
Korthauer, Keegan D; Chu, Li-Fang; Newton, Michael A; Li, Yuan; Thomson, James; Stewart, Ron; Kendziorski, Christina |
Genome biology. |
27782827 |
2016 Oct 25; |
| Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience. |
Links, Amanda E; Draper, David; Lee, Elizabeth; Guzman, Jessica; Valivullah, Zaheer; Maduro, Valerie; Lebedev, Vlad; Didenko, Maxim; Tomlin, Garrick; Brudno, Michael; Girdea, Marta; Dumitriu, Sergiu; Haendel, Melissa A; Mungall, Christopher J; Smedley, Da |
Frontiers in medicine. |
27785453 |
2016; |
| Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis. |
Liao, Katherine P; Sparks, Jeffrey A; Hejblum, Boris P; Kuo, I-Hsin; Cui, Jing; Lahey, Lauren J; Cagan, Andrew; Gainer, Vivian S; Liu, Weidong; Cai, T Tony; Sokolove, Jeremy; Cai, Tianxi |
Arthritis & rheumatology (Hoboken, N.J.). |
27792870 |
2017 Apr; |
| Objective measurement of free-living physical activity (performance) in lumbar spinal stenosis: are physical activity guidelines being met? |
Norden, Justin; Smuck, Matthew; Sinha, Aman; Hu, Richard; Tomkins-Lane, Christy |
The spine journal : official journal of the North American Spine Society. |
27793759 |
2017 Jan; |
| Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. |
Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia A; Lennartsson, Andreas; Drabløs, Finn; Ramilowski, Jordan A; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R R; Kasukawa, Takeya; Kawaji, Hideya |
Nucleic acids research. |
27794045 |
2017 Jan 04; |
| Abundant Inverse Regression using Sufficient Reduction and its Applications. |
Kim, Hyunwoo J; Smith, Brandon M; Adluru, Nagesh; Dyer, Charles R; Johnson, Sterling C; Singh, Vikas |
Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. |
27796010 |
2016 Oct; |
| Quantifying unobserved protein-coding variants in human populations provides a roadmap for large-scale sequencing projects. |
Zou, James; Valiant, Gregory; Valiant, Paul; Karczewski, Konrad; Chan, Siu On; Samocha, Kaitlin; Lek, Monkol; Sunyaev, Shamil; Daly, Mark; MacArthur, Daniel G |
Nature communications. |
27796292 |
2016 Oct 31; |
| Adaptive Signal Recovery on Graphs via Harmonic Analysis for Experimental Design in Neuroimaging. |
Kim, Won Hwa; Hwang, Seong Jae; Adluru, Nagesh; Johnson, Sterling C; Singh, Vikas |
Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision. |
27807594 |
2016 Oct; |
| Enabling an Open Data Ecosystem for the Neurosciences. |
Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, Brian |
Neuron. |
27810004 |
2016 Nov 02; |
| Coupled Harmonic Bases for Longitudinal Characterization of Brain Networks. |
Hwang, Seong Jae; Adluru, Nagesh; Collins, Maxwell D; Ravi, Sathya N; Bendlin, Barbara B; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
27812274 |
2016 Jun-Jul; |
| T2-Imaging Changes in the Nigrosome-1 Relate to Clinical Measures of Parkinson's Disease. |
Fu, Katherine A; Nathan, Romil; Dinov, Ivo D; Li, Junning; Toga, Arthur W |
Frontiers in neurology. |
27812347 |
2016; |
| Tensor Spectral Clustering for Partitioning Higher-order Network Structures. |
Benson, Austin R; Gleich, David F; Leskovec, Jure |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
27812399 |
2015; |
| Attention-Deficit/Hyperactivity Disorder symptoms coincide with altered striatal connectivity. |
Oldehinkel, Marianne; Beckmann, Christian F; Pruim, Raimon H R; van Oort, Erik S B; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, Maarten |
Biological psychiatry. Cognitive neuroscience and neuroimaging. |
27812554 |
2016 Jul; |
| Gait biomechanics in the era of data science. |
Ferber, Reed; Osis, Sean T; Hicks, Jennifer L; Delp, Scott L |
Journal of biomechanics. |
27814971 |
2016 12 08; |
| Functional connectivity in cortico-subcortical brain networks underlying reward processing in attention-deficit/hyperactivity disorder. |
Oldehinkel, Marianne; Beckmann, Christian F; Franke, Barbara; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Heslenfeld, Dirk; Buitelaar, Jan K; Mennes, Maarten |
NeuroImage. Clinical. |
27818941 |
2016; |
| Growing Wikipedia Across Languages via Recommendation. |
Wulczyn, Ellery; West, Robert; Zia, Leila; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
27819073 |
2016 Apr; |
| Diffusion-weighted imaging uncovers likely sources of processing-speed deficits in schizophrenia. |
Kochunov, Peter; Rowland, Laura M; Fieremans, Els; Veraart, Jelle; Jahanshad, Neda; Eskandar, George; Du, Xiaoming; Muellerklein, Florian; Savransky, Anya; Shukla, Dinesh; Sampath, Hemalatha; Thompson, Paul M; Hong, L Elliot |
Proceedings of the National Academy of Sciences of the United States of America. |
27834215 |
2016 Nov 22; |
| Private and Efficient Query Processing on Outsourced Genomic Databases. |
Ghasemi, Reza; Al Aziz, Md Momin; Mohammed, Noman; Dehkordi, Massoud Hadian; Jiang, Xiaoqian |
IEEE journal of biomedical and health informatics. |
27834660 |
2017 09; |
| A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets. |
Zuo, Chandler; Chen, Kailei; Kele?, Sündüz |
Journal of computational biology : a journal of computational molecular cell biology. |
27835030 |
2016 Nov 11; |
| Topological false discovery rates for brain mapping based on signal height. |
Li, Junning; Gahm, Jin Kyu; Shi, Yonggang; Toga, Arthur W |
NeuroImage. |
27838286 |
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| Bias correction in species distribution models: pooling survey and collection data for multiple species. |
Fithian, William; Elith, Jane; Hastie, Trevor; Keith, David A |
Methods in ecology and evolution. |
27840673 |
2015 Apr; |
| A network-based phenotype mapping approach to identify genes that modulate drug response phenotypes. |
Cairns, Junmei; Ung, Choong Yong; da Rocha, Edroaldo Lummertz; Zhang, Cheng; Correia, Cristina; Weinshilboum, Richard; Wang, Liewei; Li, Hu |
Scientific reports. |
27841317 |
2016 Nov 14; |
| Development of a dynamic computational model of social cognitive theory. |
Riley, William T; Martin, Cesar A; Rivera, Daniel E; Hekler, Eric B; Adams, Marc A; Buman, Matthew P; Pavel, Misha; King, Abby C |
Translational behavioral medicine. |
27848208 |
2016 12; |
| node2vec: Scalable Feature Learning for Networks. |
Grover, Aditya; Leskovec, Jure |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
27853626 |
2016 Aug; |
| Interpretable Decision Sets: A Joint Framework for Description and Prediction. |
Lakkaraju, Himabindu; Bach, Stephen H; Jure, Leskovec |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
27853627 |
2016 Aug; |
| Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set. |
Li, Hui; Zhu, Yitan; Burnside, Elizabeth S; Huang, Erich; Drukker, Karen; Hoadley, Katherine A; Fan, Cheng; Conzen, Suzanne D; Zuley, Margarita; Net, Jose M; Sutton, Elizabeth; Whitman, Gary J; Morris, Elizabeth; Perou, Charles M; Ji, Yuan; Giger, Maryellen L |
NPJ breast cancer. |
27853751 |
2016; |
| RNA-Binding Protein IGF2BP1 in Cutaneous Squamous Cell Carcinoma. |
Kim, TaeWon; Havighurst, Thomas; Kim, KyungMann; Hebbring, Scott J; Ye, Zhan; Aylward, Juliet; Keles, Sunduz; Xu, Yaohui G; Spiegelman, Vladimir S |
The Journal of investigative dermatology. |
27856289 |
2017 Mar; |
| Extension of research data repository system to support direct compute access to biomedical datasets: enhancing Dataverse to support large datasets. |
McKinney, Bill; Meyer, Peter A; Crosas, Mercè; Sliz, Piotr |
Annals of the New York Academy of Sciences. |
27862010 |
2017 Jan; |
| Colocalization of GWAS and eQTL Signals Detects Target Genes. |
Hormozdiari, Farhad; van de Bunt, Martijn; Segrè, Ayellet V; Li, Xiao; Joo, Jong Wha J; Bilow, Michael; Sul, Jae Hoon; Sankararaman, Sriram; Pasaniuc, Bogdan; Eskin, Eleazar |
American journal of human genetics. |
27866706 |
2016 Dec 01; |
| Multimodal neuroimaging of male and female brain structure in health and disease across the life span. |
Jahanshad, Neda; Thompson, Paul M |
Journal of neuroscience research. |
27870421 |
2017 01 02; |
| A review of validation strategies for computational drug repositioning. |
Brown, Adam S; Patel, Chirag J |
Briefings in bioinformatics. |
27881429 |
2018 01 01; |
| 3D tract-specific local and global analysis of white matter integrity in Alzheimer's disease. |
Jin, Yan; Huang, Chao; Daianu, Madelaine; Zhan, Liang; Dennis, Emily L; Reid, Robert I; Jack Jr, Clifford R; Zhu, Hongtu; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Human brain mapping. |
27883250 |
2017 Mar; |
| Enabling an Open Data Ecosystem for the Neurosciences. |
Wiener, Martin; Sommer, Friedrich T; Ives, Zachary G; Poldrack, Russell A; Litt, Brian |
Neuron. |
27883904 |
2016 Nov 23; |
| Genome-wide association studies of drug response and toxicity: an opportunity for genome medicine. |
Giacomini, Kathleen M; Yee, Sook Wah; Mushiroda, Taisei; Weinshilboum, Richard M; Ratain, Mark J; Kubo, Michiaki |
Nature reviews. Drug discovery. |
27885282 |
2017 Jan; |
| The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community. |
Jain, Miten; Olsen, Hugh E; Paten, Benedict; Akeson, Mark |
Genome biology. |
27887629 |
2016 11 25; |
| PROSNET: INTEGRATING HOMOLOGY WITH MOLECULAR NETWORKS FOR PROTEIN FUNCTION PREDICTION. |
Wang, Sheng; Qu, Meng; Peng, Jian |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
27896959 |
2017; |
| EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY. |
Haynes, Winston A; Vallania, Francesco; Liu, Charles; Bongen, Erika; Tomczak, Aurelie; Andres-Terrè, Marta; Lofgren, Shane; Tam, Andrew; Deisseroth, Cole A; Li, Matthew D; Sweeney, Timothy E; Khatri, Purvesh |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
27896970 |
2017; |
| DATA SHARING AND REPRODUCIBLE CLINICAL GENETIC TESTING: SUCCESSES AND CHALLENGES. |
Yang, Shan; Cline, Melissa; Zhang, Can; Paten, Benedict; Lincoln, Stephen E |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
27896972 |
2017; |
| THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE. |
Garmire, Lana X; Gliske, Stephen; Nguyen, Quynh C; Chen, Jonathan H; Nemati, Shamim; VAN Horn, John D; Moore, Jason H; Shreffler, Carol; Dunn, Michelle |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
27897014 |
2016; |
| PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements. |
Mi, Huaiyu; Huang, Xiaosong; Muruganujan, Anushya; Tang, Haiming; Mills, Caitlin; Kang, Diane; Thomas, Paul D |
Nucleic acids research. |
27899595 |
2017 Jan 04; |
| The Human Phenotype Ontology in 2017. |
Köhler, Sebastian; Vasilevsky, Nicole A; Engelstad, Mark; Foster, Erin; McMurry, Julie; Aymé, Ségolène; Baynam, Gareth; Bello, Susan M; Boerkoel, Cornelius F; Boycott, Kym M; Brudno, Michael; Buske, Orion J; Chinnery, Patrick F; Cipriani, Valentina; Connell, Laureen E; Dawkins, Hugh J S; DeMare, Laura E; Devereau, Andrew D; de Vries, Bert B A; Firth, Helen V; Freson, Kathleen; Greene, Daniel; Hamosh, Ada; Helbig, Ingo; Hum, Courtney; Jähn, Johanna A; James, Roger; Krause, Roland; F Laulederkind, Stanley J; Lochmüller, Hanns; Lyon, Gholson J; Ogishima, Soichi; Olry, Annie; Ouwehand, Willem H; Pontikos, Nikolas; Rath, Ana; Schaefer, Franz; Scott, Richard H; Segal, Michael; Sergouniotis, Panagiotis I; Sever, Richard; Smith, Cynthia L; Straub, Volker; Thompson, Rachel; Turner, Catherine; Turro, Ernest; Veltman, Marijcke W M; Vulliamy, Tom; Yu, Jing; von Ziegenweidt, Julie; Zankl, Andreas; Züchner, Stephan; Zemojtel, Tomasz; Jacobsen, Julius O B; Groza, Tudor; Smedley, Damian; Mungall, Christopher J; Haendel, Melissa; Robinson, Peter N |
Nucleic acids research. |
27899602 |
2017 Jan 04; |
| The ExAC browser: displaying reference data information from over 60 000 exomes. |
Karczewski, Konrad J; Weisburd, Ben; Thomas, Brett; Solomonson, Matthew; Ruderfer, Douglas M; Kavanagh, David; Hamamsy, Tymor; Lek, Monkol; Samocha, Kaitlin E; Cummings, Beryl B; Birnbaum, Daniel; The Exome Aggregation Consortium; Daly, Mark J; MacArthur, Daniel G |
Nucleic acids research. |
27899611 |
2017 Jan 04; |
| The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. |
Mungall, Christopher J; McMurry, Julie A; Köhler, Sebastian; Balhoff, James P; Borromeo, Charles; Brush, Matthew; Carbon, Seth; Conlin, Tom; Dunn, Nathan; Engelstad, Mark; Foster, Erin; Gourdine, J P; Jacobsen, Julius O B; Keith, Dan; Laraway, Bryan; Lewis, Suzanna E; NguyenXuan, Jeremy; Shefchek, Kent; Vasilevsky, Nicole; Yuan, Zhou; Washington, Nicole; Hochheiser, Harry; Groza, Tudor; Smedley, Damian; Robinson, Peter N; Haendel, Melissa A |
Nucleic acids research. |
27899636 |
2017 01 04; |
| The UCSC Genome Browser database: 2017 update. |
Tyner, Cath; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Eisenhart, Christopher; Fischer, Clayton M; Gibson, David; Gonzalez, Jairo Navarro; Guruvadoo, Luvina; Haeussler, Maximilian; Heitner, Steve; Hinrichs, Angie S; Karolchik, Donna; Lee, Brian T; Lee, Christopher M; Nejad, Parisa; Raney, Brian J; Rosenbloom, Kate R; Speir, Matthew L; Villarreal, Chris; Vivian, John; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W James |
Nucleic acids research. |
27899642 |
2017 Jan 04; |
| Childhood adversity impacts on brain subcortical structures relevant to depression. |
Frodl, Thomas; Janowitz, Deborah; Schmaal, Lianne; Tozzi, Leonardo; Dobrowolny, Henrik; Stein, Dan J; Veltman, Dick J; Wittfeld, Katharina; van Erp, Theo G M; Jahanshad, Neda; Block, Andrea; Hegenscheid, Katrin; Völzke, Henry; Lagopoulos, Jim; Hatton, Sean N; Hickie, Ian B; Frey, Eva Maria; Carballedo, Angela; Brooks, Samantha J; Vuletic, Daniella; Uhlmann, Anne; Veer, Ilya M; Walter, Henrik; Schnell, Knut; Grotegerd, Dominik; Arolt, Volker; Kugel, Harald; Schramm, Elisabeth; Konrad, Carsten; Zurowski, Bartosz; Baune, Bernhard T; van der Wee, Nic J A; van Tol, Marie-Jose; Penninx, Brenda W J H; Thompson, Paul M; Hibar, Derrek P; Dannlowski, Udo; Grabe, Hans J |
Journal of psychiatric research. |
27918926 |
2017 Mar; |
| The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. |
Deutsch, Eric W; Csordas, Attila; Sun, Zhi; Jarnuczak, Andrew; Perez-Riverol, Yasset; Ternent, Tobias; Campbell, David S; Bernal-Llinares, Manuel; Okuda, Shujiro; Kawano, Shin; Moritz, Robert L; Carver, Jeremy J; Wang, Mingxun; Ishihama, Yasushi; Bandeira, Nuno; Hermjakob, Henning; Vizcaíno, Juan Antonio |
Nucleic acids research. |
27924013 |
2017 Jan 04; |
| Large-scale identification of patients with cerebral aneurysms using natural language processing. |
Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Can, Anil; Abd-El-Barr, Muhammad; Gainer, Vivian; Shadick, Nancy A; Murphy, Shawn; Cai, Tianxi; Savova, Guergana; Weiss, Scott T; Du, Rose |
Neurology. |
27927935 |
2017 Jan 10; |
| Influence of donor age on induced pluripotent stem cells. |
Lo Sardo, Valentina; Ferguson, William; Erikson, Galina A; Topol, Eric J; Baldwin, Kristin K; Torkamani, Ali |
Nature biotechnology. |
27941802 |
2017 Jan; |
| First Steps Into the Brave New Transdiscipline of Mobile Health. |
Spring, Bonnie; Pfammatter, Angela; Alshurafa, Nabil |
JAMA cardiology. |
27973672 |
2017 Jan 01; |
| Heritability of the shape of subcortical brain structures in the general population. |
Roshchupkin, Gennady V; Gutman, Boris A; Vernooij, Meike W; Jahanshad, Neda; Martin, Nicholas G; Hofman, Albert; McMahon, Katie L; van der Lee, Sven J; van Duijn, Cornelia M; de Zubicaray, Greig I; Uitterlinden, André G; Wright, Margaret J; Niessen, Wiro J; Thompson, Paul M; Ikram, M Arfan; Adams, Hieab H H |
Nature communications. |
27976715 |
2016 Dec 15; |
| Cardiovascular proteomics in the era of big data: experimental and computational advances. |
Lam, Maggie P Y; Lau, Edward; Ng, Dominic C M; Wang, Ding; Ping, Peipei |
Clinical proteomics. |
27980500 |
2016; |
| Screening Breast MRI Outcomes in Routine Clinical Practice: Comparison to BI-RADS Benchmarks. |
Strigel, Roberta M; Rollenhagen, Jennifer; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie; DeMartini, Wendy B |
Academic radiology. |
27986508 |
2017 Apr; |
| mCrave: Continuous Estimation of Craving During Smoking Cessation. |
Chatterjee, Soujanya; Hovsepian, Karen; Sarker, Hillol; Saleheen, Nazir; al'Absi, Mustafa; Atluri, Gowtham; Ertin, Emre; Lam, Cho; Lemieux, Andrine; Nakajima, Motohiro; Spring, Bonnie; Wetter, David W; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
27990501 |
2016 Sep; |
| Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers. |
Spagnolo, Daniel M; Gyanchandani, Rekha; Al-Kofahi, Yousef; Stern, Andrew M; Lezon, Timothy R; Gough, Albert; Meyer, Dan E; Ginty, Fiona; Sarachan, Brion; Fine, Jeffrey; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S Chakra |
Journal of pathology informatics. |
27994939 |
2016; |
| Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome. |
Garlid, Anders Olav; Polson, Jennifer S; Garlid, Keith D; Hermjakob, Henning; Ping, Peipei |
Handbook of experimental pharmacology. |
27995389 |
2017; |
| Proteomics Research in Cardiovascular Medicine and Biomarker Discovery. |
Lam, Maggie P Y; Ping, Peipei; Murphy, Elizabeth |
Journal of the American College of Cardiology. |
28007144 |
2016 Dec 27; |
| Relationship of a common OXTR gene variant to brain structure and default mode network function in healthy humans. |
Wang, Junping; Braskie, Meredith N; Hafzalla, George W; Faskowitz, Joshua; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Yu, Chunshui; Thompson, Paul M |
NeuroImage. |
28017919 |
2017 Feb 15; |
| Allostatic load and reduced cortical thickness in schizophrenia. |
Chiappelli, Joshua; Kochunov, Peter; Savransky, Anya; Fisseha, Feven; Wisner, Krista; Du, Xiaoming; Rowland, Laura M; Hong, L Elliot |
Psychoneuroendocrinology. |
28027496 |
2017 Mar; |
| A SMART data analysis method for constructing adaptive treatment strategies for substance use disorders. |
Nahum-Shani, Inbal; Ertefaie, Ashkan; Lu, Xi Lucy; Lynch, Kevin G; McKay, James R; Oslin, David W; Almirall, Daniel |
Addiction (Abingdon, England). |
28029718 |
2017 May; |
| Towards a Holistic Cortical Thickness Descriptor: Heat Kernel-Based Grey Matter Morphology Signatures. |
Wang, Gang; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
28033566 |
2017 Feb 15; |
| Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of Tumorigenesis. |
Zhou, Zhuan; Luo, Aiping; Shrivastava, Indira; He, Mingjing; Huang, Yi; Bahar, Ivet; Liu, Zhihua; Wan, Yong |
EBioMedicine. |
28040451 |
2017 Feb; |
| Structured Matrix Completion with Applications to Genomic Data Integration. |
Cai, Tianxi; Cai, T Tony; Zhang, Anru |
Journal of the American Statistical Association. |
28042188 |
2016; |
| Identifying disordered eating behaviours in adolescents: how do parent and adolescent reports differ by sex and age? |
Bartholdy, Savani; Allen, Karina; Hodsoll, John; O'Daly, Owen G; Campbell, Iain C; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Mennigen, Eva; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Schmidt, Ulrike |
European child & adolescent psychiatry. |
28050706 |
2017 Jun; |
| Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease. |
Mayers, Michael D; Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W |
Journal of proteome research. |
28052195 |
2017 Feb 03; |
| Preparatory co-activation of the ankle muscles may prevent ankle inversion injuries. |
DeMers, Matthew S; Hicks, Jennifer L; Delp, Scott L |
Journal of biomechanics. |
28057351 |
2017 Feb 08; |
| mSieve: Differential Behavioral Privacy in Time Series of Mobile Sensor Data. |
Saleheen, Nazir; Chakraborty, Supriyo; Ali, Nasir; Mahbubur Rahman, Md; Hossain, Syed Monowar; Bari, Rummana; Buder, Eugene; Srivastava, Mani; Kumar, Santosh |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
28058408 |
2016 Sep; |
| Finding Significant Stress Episodes in a Discontinuous Time Series of Rapidly Varying Mobile Sensor Data. |
Sarker, Hillol; Tyburski, Matthew; Rahman, Md Mahbubur; Hovsepian, Karen; Sharmin, Moushumi; Epstein, David H; Preston, Kenzie L; Furr-Holden, C Debra; Milam, Adam; Nahum-Shani, Inbal; al'Absi, Mustafa; Kumar, Santosh |
Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference. |
28058409 |
2016 May; |
| Hyperbolic Space Sparse Coding with Its Application on Prediction of Alzheimer's Disease in Mild Cognitive Impairment. |
Zhang, Jie; Shi, Jie; Stonnington, Cynthia; Li, Qingyang; Gutman, Boris A; Chen, Kewei; Reiman, Eric M; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. |
28066843 |
2016 Oct; |
| Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health. |
Manrai, Arjun K; Cui, Yuxia; Bushel, Pierre R; Hall, Molly; Karakitsios, Spyros; Mattingly, Carolyn J; Ritchie, Marylyn; Schmitt, Charles; Sarigiannis, Denis A; Thomas, Duncan C; Wishart, David; Balshaw, David M; Patel, Chirag J |
Annual review of public health. |
28068484 |
2017 03 20; |
| EmptyHeaded: A Relational Engine for Graph Processing. |
Aberger, Christopher R; Tu, Susan; Olukotun, Kunle; Ré, Christopher |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
28077912 |
2016 Jun-Jul; |
| Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information. |
Li, Xiao; Dunn, Jessilyn; Salins, Denis; Zhou, Gao; Zhou, Wenyu; Schüssler-Fiorenza Rose, Sophia Miryam; Perelman, Dalia; Colbert, Elizabeth; Runge, Ryan; Rego, Shannon; Sonecha, Ria; Datta, Somalee; McLaughlin, Tracey; Snyder, Michael P |
PLoS biology. |
28081144 |
2017 Jan; |
| Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies. |
Nikolova, Olga; Moser, Russell; Kemp, Christopher; Gönen, Mehmet; Margolin, Adam A |
Bioinformatics (Oxford, England). |
28082455 |
2017 May 01; |
| Evaluating surrogate marker information using censored data. |
Parast, Layla; Cai, Tianxi; Tian, Lu |
Statistics in medicine. |
28088843 |
2017 May 20; |
| Domain Adaptation Methods for Improving Lab-to-field Generalization of Cocaine Detection using Wearable ECG. |
Natarajan, Annamalai; Angarita, Gustavo; Gaiser, Edward; Malison, Robert; Ganesan, Deepak; Marlin, Benjamin M |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
28090605 |
2016 Sep; |
| Hierarchical Span-Based Conditional Random Fields for Labeling and Segmenting Events in Wearable Sensor Data Streams. |
Adams, Roy J; Saleheen, Nazir; Thomaz, Edison; Parate, Abhinav; Kumar, Santosh; Marlin, Benjamin M |
Proceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning. |
28090606 |
2016 Jun; |
| Brain substrates of reward processing and the ?-opioid receptor: a pathway into pain? |
Nees, Frauke; Becker, Susanne; Millenet, Sabina; Banaschewski, Tobias; Poustka, Luise; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Conrod, Patricia J; Desrivières, Sylvane; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Flor, Herta; IMAGEN consortium |
Pain. |
28092323 |
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| Novel genetic loci associated with hippocampal volume. |
Hibar, Derrek P (see original citation for additional authors) |
Nature communications. |
28098162 |
2017 Jan 18; |
| White matter hyperintensities correlate to cognition and fiber tract integrity in older adults with HIV. |
Watson, Christa; Busovaca, Edgar; Foley, Jessica M; Allen, I Elaine; Schwarz, Christopher G; Jahanshad, Neda; Nir, Talia M; Esmaeili-Firidouni, Pardis; Milanini, Benedetta; Rosen, Howard; Carmichael, Owen T; Thompson, Paul M; Valcour, Victor G |
Journal of neurovirology. |
28101804 |
2017 Jun; |
| Simultaneous Modeling of Disease Status and Clinical Phenotypes To Increase Power in Genome-Wide Association Studies. |
Bilow, Michael; Crespo, Fernando; Pan, Zhicheng; Eskin, Eleazar; Eyheramendy, Susana |
Genetics. |
28132020 |
2017 Mar; |
| Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling. |
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Genome research. |
28137821 |
2017 May; |
| CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. |
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Nature genetics. |
28138153 |
2017 Jan 31; |
| Towards Globally Optimal Crowdsourcing Quality Management: The Uniform Worker Setting. |
Das Sarma, Akash; Parameswaran, Aditya; Widom, Jennifer |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
28149000 |
2016 Jun-Jul; |
| Decibel: The Relational Dataset Branching System. |
Maddox, Michael; Goehring, David; Elmore, Aaron J; Madden, Samuel; Parameswaran, Aditya; Deshpande, Amol |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
28149668 |
2016 May; |
| Brain imaging genetics in ADHD and beyond - Mapping pathways from gene to disorder at different levels of complexity. |
Klein, Marieke; Onnink, Marten; van Donkelaar, Marjolein; Wolfers, Thomas; Harich, Benjamin; Shi, Yan; Dammers, Janneke; Arias-Vásquez, Alejandro; Hoogman, Martine; Franke, Barbara |
Neuroscience and biobehavioral reviews. |
28159610 |
2017 Sep; |
| GMove: Group-Level Mobility Modeling Using Geo-Tagged Social Media. |
Zhang, Chao; Zhang, Keyang; Yuan, Quan; Zhang, Luming; Hanratty, Tim; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
28163978 |
2016 Aug; |
| DPClass: An Effective but Concise Discriminative Patterns-Based Classification Framework. |
Shang, Jingbo; Tong, Wenzhu; Peng, Jian; Han, Jiawei |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
28163983 |
2016 May; |
| Phantom PAINS: Problems with the Utility of Alerts for Pan-Assay INterference CompoundS. |
Capuzzi, Stephen J; Muratov, Eugene N; Tropsha, Alexander |
Journal of chemical information and modeling. |
28165734 |
2017 Mar 27; |
| Effect of Physical Activity on Self-Reported Disability in Older Adults: Results from the LIFE Study. |
Manini, Todd M; Beavers, Daniel P; Pahor, Marco; Guralnik, Jack M; Spring, Bonnie; Church, Timothy S; King, Abby C; Folta, Sara C; Glynn, Nancy W; Marsh, Anthony P; Gill, Thomas M; LIFE study investigators |
Journal of the American Geriatrics Society. |
28168689 |
2017 May; |
| MACFP: Maximal Approximate Consecutive Frequent Pattern Mining under Edit Distance. |
Shang, Jingbo; Peng, Jian; Han, Jiawei |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
28174677 |
2016 May; |
| Mining Discriminative Patterns to Predict Health Status for Cardiopulmonary Patients. |
Cheng, Qian; Shang, Jingbo; Juen, Joshua; Han, Jiawei; Schatz, Bruce |
ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. |
28174760 |
2016 Oct; |
| Network-level assessment of reward-related activation in patients with ADHD and healthy individuals. |
von Rhein, Daniel; Beckmann, Christian F; Franke, Barbara; Oosterlaan, Jaap; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina A; Luman, Marjolein; Faraone, Stephen V; Cools, Roshan; Buitelaar, Jan K; Mennes, Maarten |
Human brain mapping. |
28176434 |
2017 05; |
| Squish: Near-Optimal Compression for Archival of Relational Datasets. |
Gao, Yihan; Parameswaran, Aditya |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
28180028 |
2016 Aug; |
| Independent value added by diffusion MRI for prediction of cognitive function in older adults. |
Scott, Julia A; Tosun, Duygu; Braskie, Meredith N; Maillard, Pauline; Thompson, Paul M; Weiner, Michael; DeCarli, Charles; Carmichael, Owen T; ADNI |
NeuroImage. Clinical. |
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| Predictive Modeling of Physician-Patient Dynamics That Influence Sleep Medication Prescriptions and Clinical Decision-Making. |
Beam, Andrew L; Kartoun, Uri; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Shaw, Stanley Y; Kohane, Isaac S |
Scientific reports. |
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2017 Feb 09; |
| Dual PI3K/mTOR Inhibition in Colorectal Cancers withAPCandPIK3CAMutations. |
Foley, Tyler M; Payne, Susan N; Pasch, Cheri A; Yueh, Alex E; Van De Hey, Dana R; Korkos, Demetra P; Clipson, Linda; Maher, Molly E; Matkowskyj, Kristina A; Newton, Michael A; Deming, Dustin A |
Molecular cancer research : MCR. |
28184015 |
2017 02 09; |
| Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples. |
Kosmicki, Jack A; Samocha, Kaitlin E; Howrigan, Daniel P; Sanders, Stephan J; Slowikowski, Kamil; Lek, Monkol; Karczewski, Konrad J; Cutler, David J; Devlin, Bernie; Roeder, Kathryn; Buxbaum, Joseph D; Neale, Benjamin M; MacArthur, Daniel G; Wall, Dennis P; Robinson, Elise B; Daly, Mark J |
Nature genetics. |
28191890 |
2017 Apr; |
| The Exposome Research Paradigm: an Opportunity to Understand the Environmental Basis for Human Health and Disease. |
Buck Louis, Germaine M; Smarr, Melissa M; Patel, Chirag J |
Current environmental health reports. |
28194614 |
2017 Mar; |
| Causal Discovery from Subsampled Time Series Data by Constraint Optimization. |
Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, David |
JMLR workshop and conference proceedings. |
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2016 Aug; |
| Dynamics of Large Multi-View Social Networks: Synergy, Cannibalization and Cross-View Interplay. |
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KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
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2016 Aug; |
| Interactive Data Exploration with Smart Drill-Down. |
Joglekar, Manas; Garcia-Molina, Hector; Parameswaran, Aditya |
Proceedings. International Conference on Data Engineering. |
28210096 |
2016 May; |
| FacetGist: Collective Extraction of Document Facets in Large Technical Corpora. |
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Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management. |
28210517 |
2016 Oct; |
| A general statistical framework for subgroup identification and comparative treatment scoring. |
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Biometrics. |
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2017 Dec; |
| Septic Cardiomyopathy: Getting to the Heart of the Matter. |
Sweeney, Timothy E; Khatri, Purvesh |
Critical care medicine. |
28212222 |
2017 Mar; |
| Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx). |
Solbrig, Harold R; Prud'hommeaux, Eric; Grieve, Grahame; McKenzie, Lloyd; Mandel, Joshua C; Sharma, Deepak K; Jiang, Guoqian |
Journal of biomedical informatics. |
28213144 |
2017 03; |
| Estimating Causal Effects with Ancestral Graph Markov Models. |
Malinsky, Daniel; Spirtes, Peter |
JMLR workshop and conference proceedings. |
28217244 |
2016 Aug; |
| Mapping DNA methylation with high-throughput nanopore sequencing. |
Rand, Arthur C; Jain, Miten; Eizenga, Jordan M; Musselman-Brown, Audrey; Olsen, Hugh E; Akeson, Mark; Paten, Benedict |
Nature methods. |
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2017 Apr; |
| Subcortical brain volume differences in participants with attention deficit hyperactivity disorder in children and adults: a cross-sectional mega-analysis. |
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The lancet. Psychiatry. |
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2017 Apr; |
| Chemoproteomic profiling and discovery of protein electrophiles in human cells. |
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Nature chemistry. |
28221344 |
2017 Mar; |
| Representing Documents via Latent Keyphrase Inference. |
Liu, Jialu; Ren, Xiang; Shang, Jingbo; Cassidy, Taylor; Voss, Clare R; Han, Jiawei |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
28229132 |
2016 Apr; |
| Pathogenic ASXL1 somatic variants in reference databases complicate germline variant interpretation for Bohring-Opitz Syndrome. |
Carlston, Colleen M; O'Donnell-Luria, Anne H; Underhill, Hunter R; Cummings, Beryl B; Weisburd, Ben; Minikel, Eric V; Birnbaum, Daniel P; Exome Aggregation Consortium; Tvrdik, Tatiana; MacArthur, Daniel G; Mao, Rong |
Human mutation. |
28229513 |
2017 May; |
| Biologically Relevant Heterogeneity: Metrics and Practical Insights. |
Gough, Albert; Stern, Andrew M; Maier, John; Lezon, Timothy; Shun, Tong-Ying; Chennubhotla, Chakra; Schurdak, Mark E; Haney, Steven A; Taylor, D Lansing |
SLAS discovery. |
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2017 Mar; |
| Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group. |
BRAINS (Brain Imaging in Normal Subjects) Expert Working Group; Shenkin, Susan D; Pernet, Cyril; Nichols, Thomas E; Poline, Jean-Baptiste; Matthews, Paul M; van der Lugt, Aad; Mackay, Clare; Lanyon, Linda; Mazoyer, Bernard; Boardman, James P; Thompson, Paul M; Fox, Nick; Marcus, Daniel S; Sheikh, Aziz; Cox, Simon R; Anblagan, Devasuda; Job, Dominic E; Dickie, David Alexander; Rodriguez, David; Wardlaw, Joanna M |
NeuroImage. |
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2017 Jun; |
| Data-Driven Contextual Valence Shifter Quantification for Multi-Theme Sentiment Analysis. |
Yu, Hongkun; Shang, Jingbo; Hsu, Meichun; Castellanos, Malú; Han, Jiawei |
Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management. |
28232874 |
2016 Oct; |
| Effects of dopaminergic genes, prenatal adversities, and their interaction on attention-deficit/hyperactivity disorder and neural correlates of response inhibition. |
van der Meer, Dennis; Hartman, Catharina A; van Rooij, Daan; Franke, Barbara; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Buitelaar, Jan K; Hoekstra, Pieter J |
Journal of psychiatry & neuroscience : JPN. |
28234207 |
2017 Mar; |
| Physical performance analysis: A new approach to assessing free-living physical activity in musculoskeletal pain and mobility-limited populations. |
Smuck, Matthew; Tomkins-Lane, Christy; Ith, Ma Agnes; Jarosz, Renata; Kao, Ming-Chih Jeffrey |
PloS one. |
28235039 |
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| Inattention and Reaction Time Variability Are Linked to Ventromedial Prefrontal Volume in Adolescents. |
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Biological psychiatry. |
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2017 Nov 01; |
| Domain Adaptation with Conditional Transferable Components. |
Gong, Mingming; Zhang, Kun; Liu, Tongliang; Tao, Dacheng; Glymour, Clark; Schölkopf, Bernhard |
JMLR workshop and conference proceedings. |
28239433 |
2016 Jun; |
| A Hybrid Causal Search Algorithm for Latent Variable Models. |
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JMLR workshop and conference proceedings. |
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2016 Aug; |
| Reproducibility of tract-based white matter microstructural measures using the ENIGMA-DTI protocol. |
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Brain and behavior. |
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| Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation. |
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Nature methods. |
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| Reactome pathway analysis: a high-performance in-memory approach. |
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BMC bioinformatics. |
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2017 Mar 02; |
| Analytic Complexity and Challenges in Identifying Mixtures of Exposures Associated with Phenotypes in the Exposome Era. |
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Current epidemiology reports. |
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| Mammography Screening: Gaps in Patient's and Physician's Needs for Shared Decision-Making. |
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The breast journal. |
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2017 Mar; |
| Latent Variable Graphical Model Selection using Harmonic Analysis: Applications to the Human Connectome Project (HCP). |
Kim, Won Hwa; Kim, Hyunwoo J; Adluru, Nagesh; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
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| Fractional anisotropy derived from the diffusion tensor distribution function boosts power to detect Alzheimer's disease deficits. |
Nir, Talia M; Jahanshad, Neda; Villalon-Reina, Julio E; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Zhan, Liang; Leow, Alex D; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Diseaase Neuroimaginng Initiative (ADNI) |
Magnetic resonance in medicine. |
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2017 Dec; |
| An Extended SNOMED CT Concept Model for Observations in Molecular Genetics. |
Campbell, James R; Talmon, Geoffrey; Cushman-Vokoun, Allison; Karlsson, Daniel; Scott Campbell, W |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
28269830 |
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| Modeling the Temporal Evolution of Postoperative Complications. |
Feld, Shara I; Cobian, Alexander G; Tevis, Sarah E; Kennedy, Gregory D; Craven, Mark W |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
28269851 |
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| Sequence robust association test for familial data. |
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Biometrics. |
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2017 09; |
| Measurement Error and Causal Discovery. |
Scheines, Richard; Ramsey, Joseph |
CEUR workshop proceedings. |
28280453 |
2016 Jun; |
| HSPA5 Gene encoding Hsp70 chaperone BiP in the endoplasmic reticulum. |
Wang, Jie; Lee, Jessica; Liem, David; Ping, Peipei |
Gene. |
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2017 Jun 30; |
| Laissez-Faire : Fully Asymmetric Backscatter Communication. |
Hu, Pan; Zhang, Pengyu; Ganesan, Deepak |
Proceedings of ACM SIGCOMM ... Conference. ACM SIGCOMM Conference. |
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| The authors reply. |
Sweeney, Timothy E; Khatri, Purvesh |
Critical care medicine. |
28291107 |
2017 Apr; |
| Augmented estimation for t-year survival with censored regression models. |
Zheng, Yu; Cai, Tianxi |
Biometrics. |
28294286 |
2017 Dec; |
| Diverging white matter trajectories in children after traumatic brain injury: The RAPBI study. |
Dennis, Emily L; Rashid, Faisal; Ellis, Monica U; Babikian, Talin; Vlasova, Roza M; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
Neurology. |
28298549 |
2017 Apr 11; |
| The impact of aging on cardiac extracellular matrix. |
Meschiari, Cesar A; Ero, Osasere Kelvin; Pan, Haihui; Finkel, Toren; Lindsey, Merry L |
GeroScience. |
28299638 |
2017 Feb; |
| Extracting Databases from Dark Data with DeepDive. |
Zhang, Ce; Shin, Jaeho; Ré, Christopher; Cafarella, Michael; Niu, Feng |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
28316365 |
2016 Jun-Jul; |
| Binary Classifier Calibration using an Ensemble of Near Isotonic Regression Models. |
Naeini, Mahdi Pakdaman; Cooper, Gregory F |
Proceedings. IEEE International Conference on Data Mining. |
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2016 Dec; |
| Computational Drug Repositioning Using Continuous Self-Controlled Case Series. |
Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, David |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
28316874 |
2016 Aug; |
| Programming and Runtime Support to Blaze FPGA Accelerator Deployment at Datacenter Scale. |
Huang, Muhuan; Wu, Di; Yu, Cody Hao; Fang, Zhenman; Interlandi, Matteo; Condie, Tyson; Cong, Jason |
Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). |
28317049 |
2016 Oct; |
| Functional Neuroimaging Predictors of Self-Reported Psychotic Symptoms in Adolescents. |
Bourque, Josiane; Spechler, Philip A; Potvin, Stéphane; Whelan, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère-Martinot, Marie-Laure; McEwen, Sarah C; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Conrod, Patricia J; IMAGEN Consortium |
The American journal of psychiatry. |
28320226 |
2017 06 01; |
| Liberal Entity Extraction: Rapid Construction of Fine-Grained Entity Typing Systems. |
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Big data. |
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| Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images. |
Nguyen, Luong; Tosun, Akif Burak; Fine, Jeffrey L; Lee, Adrian V; Taylor, D Lansing; Chennubhotla, S Chakra |
IEEE transactions on medical imaging. |
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2017 Jul; |
| Network analysis: a novel method for mapping neonatal acute transport patterns in California. |
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Journal of perinatology : official journal of the California Perinatal Association. |
28333155 |
2017 Jun; |
| Use of WHONET-SaTScan system for simulated real-time detection of antimicrobial resistance clusters in a hospital in Italy, 2012 to 2014. |
Natale, Alessandra; Stelling, John; Meledandri, Marcello; Messenger, Louisa A; D'Ancona, Fortunato |
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. |
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2017 Mar 16; |
| Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings. |
Sauerwald, Natalie; Zhang, She; Kingsford, Carl; Bahar, Ivet |
Nucleic acids research. |
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2017 Apr 20; |
| Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. |
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Journal of the American Medical Informatics Association : JAMIA. |
28339683 |
2017 Jul 01; |
| Muscle-tendon mechanics explain unexpected effects of exoskeleton assistance on metabolic rate during walking. |
Jackson, Rachel W; Dembia, Christopher L; Delp, Scott L; Collins, Steven H |
The Journal of experimental biology. |
28341663 |
2017 Jun 01; |
| Privacy and Security in Mobile Health: A Research Agenda. |
Kotz, David; Gunter, Carl A; Kumar, Santosh; Weiner, Jonathan P |
Computer. |
28344359 |
2016 Jun; |
| DeepDive: Declarative Knowledge Base Construction. |
De Sa, Christopher; Ratner, Alex; Ré, Christopher; Shin, Jaeho; Wang, Feiran; Wu, Sen; Zhang, Ce |
SIGMOD record. |
28344371 |
2016 Mar; |
| Scan Order in Gibbs Sampling: Models in Which it Matters and Bounds on How Much. |
He, Bryan; De Sa, Christopher; Mitliagkas, Ioannis; Ré, Christopher |
Advances in neural information processing systems. |
28344429 |
2016; |
| Control Engineering Methods for the Design of Robust Behavioral Treatments. |
Bekiroglu, Korkut; Lagoa, Constantino; Murphy, Suzan A; Lanza, Stephanie T |
IEEE transactions on control systems technology : a publication of the IEEE Control Systems Society. |
28344431 |
2017 May; |
| Ensuring Rapid Mixing and Low Bias for Asynchronous Gibbs Sampling. |
De Sa, Christopher; Olukotun, Kunle; Ré, Christopher |
JMLR workshop and conference proceedings. |
28344730 |
2016; |
| The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows. |
O'Connor, Brian D; Yuen, Denis; Chung, Vincent; Duncan, Andrew G; Liu, Xiang Kun; Patricia, Janice; Paten, Benedict; Stein, Lincoln; Ferretti, Vincent |
F1000Research. |
28344774 |
2017; |
| SNAP: A General Purpose Network Analysis and Graph Mining Library. |
Leskovec, Jure; Sosi?, Rok |
ACM transactions on intelligent systems and technology. |
28344853 |
2016 Oct; |
| Large-scale Analysis of Counseling Conversations: An Application of Natural Language Processing to Mental Health. |
Althoff, Tim; Clark, Kevin; Leskovec, Jure |
Transactions of the Association for Computational Linguistics. |
28344978 |
2016; |
| Online Actions with Offline Impact: How Online Social Networks Influence Online and Offline User Behavior. |
Althoff, Tim; Jindal, Pranav; Leskovec, Jure |
Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining. |
28345078 |
2017 Feb; |
| Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice. |
Saul, Michael C; Seward, Christopher H; Troy, Joseph M; Zhang, Huimin; Sloofman, Laura G; Lu, Xiaochen; Weisner, Patricia A; Caetano-Anolles, Derek; Sun, Hao; Zhao, Sihai Dave; Chandrasekaran, Sriram; Sinha, Saurabh; Stubbs, Lisa |
Genome research. |
28356321 |
2017 06; |
| Binary Classifier Calibration Using an Ensemble of Linear Trend Estimation. |
Naeini, Mahdi Pakdaman; Cooper, Gregory F |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
28357158 |
2016 May; |
| Genome graphs and the evolution of genome inference. |
Paten, Benedict; Novak, Adam M; Eizenga, Jordan M; Garrison, Erik |
Genome research. |
28360232 |
2017 May; |
| Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine. |
Ping, Peipei; Watson, Karol; Han, Jiawei; Bui, Alex |
Circulation research. |
28360346 |
2017 Mar 31; |
| Revealing common disease mechanisms shared by tumors of different tissues of origin through semantic representation of genomic alterations and topic modeling. |
Chen, Vicky; Paisley, John; Lu, Xinghua |
BMC genomics. |
28361690 |
2017 03 14; |
| An algorithm for direct causal learning of influences on patient outcomes. |
Rathnam, Chandramouli; Lee, Sanghoon; Jiang, Xia |
Artificial intelligence in medicine. |
28363452 |
2017 Jan; |
| Cardiac Fibroblast Activation Post-Myocardial Infarction: Current Knowledge Gaps. |
Ma, Yonggang; Iyer, Rugmani Padmanabhan; Jung, Mira; Czubryt, Michael P; Lindsey, Merry L |
Trends in pharmacological sciences. |
28365093 |
2017 May; |
| WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. |
Putman, Tim E; Lelong, Sebastien; Burgstaller-Muehlbacher, Sebastian; Waagmeester, Andra; Diesh, Colin; Dunn, Nathan; Munoz-Torres, Monica; Stupp, Gregory S; Wu, Chunlei; Su, Andrew I; Good, Benjamin M |
Database : the journal of biological databases and curation. |
28365742 |
2017 Jan 01; |
| Envisioning the Future of 'Big Data' Biomedicine. |
Bui, Alex A T; Darrell Van Horn, John; NIH BD2K Centers Consortium |
Journal of biomedical informatics. |
28366789 |
2017 Mar 30; |
| Positive symptoms associate with cortical thinning in the superior temporal gyrus via the ENIGMA Schizophrenia consortium. |
Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; Van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Mørch-Johnsen, L; Faerden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Preda, A; De Rossi, P; Piras, F; Banaj, N; Ciullo, V; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, S |
Acta psychiatrica Scandinavica. |
28369804 |
2017 May; |
| Structuring supplemental materials in support of reproducibility. |
Greenbaum, Dov; Rozowsky, Joel; Stodden, Victoria; Gerstein, Mark |
Genome biology. |
28381262 |
2017 Apr 05; |
| Mutation of WIF1: a potential novel cause of a Nail-Patella-like disorder. |
Jones, Marilyn C; Topol, Sarah E; Rueda, Manuel; Oliveira, Glenn; Phillips, Tierney; Spencer, Emily G; Torkamani, Ali |
Genetics in medicine : official journal of the American College of Medical Genetics. |
28383544 |
2017 Oct; |
| Combining clinical and genomics queries using i2b2 - Three methods. |
Murphy, Shawn N; Avillach, Paul; Bellazzi, Riccardo; Phillips, Lori; Gabetta, Matteo; Eran, Alal; McDuffie, Michael T; Kohane, Isaac S |
PloS one. |
28388645 |
2017; |
| Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. |
Baker, K S; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, H M; Guzmán-Verri, C; Mather, A E; Diaz Velasco, S; Zamudio Rojas, M L; Forbester, J L; Connor, T R; Keddy, K H; Smith, A M; López de Delgado, E A; An |
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. |
28389276 |
2017 Nov; |
| Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data. |
Kuang, Zhaobin; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Page, David |
IJCAI : proceedings of the conference. |
28392671 |
2016 Jul; |
| Shape Analysis with Hyperbolic Wasserstein Distance. |
Shi, Jie; Zhang, Wen; Wang, Yalin |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
28392672 |
2016 Jun; |
| A million variables and more: the Fast Greedy Equivalence Search algorithm for learning high-dimensional graphical causal models, with an application to functional magnetic resonance images. |
Ramsey, Joseph; Glymour, Madelyn; Sanchez-Romero, Ruben; Glymour, Clark |
International journal of data science and analytics. |
28393106 |
2017 Mar; |
| EFhd2/Swiprosin-1 is a common genetic determinator for sensation-seeking/low anxiety and alcohol addiction. |
Mielenz, D; Reichel, M; Jia, T; Quinlan, E B; Stöckl, T; Mettang, M; Zilske, D; Kirmizi-Alsan, E; Schönberger, P; Praetner, M; Huber, S E; Amato, D; Schwarz, M; Purohit, P; Brachs, S; Spranger, J; Hess, A; Büttner, C; Ekici, A B; Perez-Branguli, F; Winner, B; Rauschenberger, V; Banaschewski, T; Bokde, A L W; Büchel, C; Conrod, P J; Desrivières, S; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Lemaitre, H; Nees, F; Paus, T; Smolka, M N; IMAGEN Consortium; Schambony, A; Bäuerle, T; Eulenburg, V; Alzheimer, C; Lourdusamy, A; Schumann, G; Müller, C P |
Molecular psychiatry. |
28397836 |
2018 May; |
| Toil enables reproducible, open source, big biomedical data analyses. |
Vivian, John; Rao, Arjun Arkal; Nothaft, Frank Austin; Ketchum, Christopher; Armstrong, Joel; Novak, Adam; Pfeil, Jacob; Narkizian, Jake; Deran, Alden D; Musselman-Brown, Audrey; Schmidt, Hannes; Amstutz, Peter; Craft, Brian; Goldman, Mary; Rosenbloom, Kate; Cline, Melissa; O'Connor, Brian; Hanna, Megan; Birger, Chet; Kent, W James; Patterson, David A; Joseph, Anthony D; Zhu, Jingchun; Zaranek, Sasha; Getz, Gad; Haussler, David; Paten, Benedict |
Nature biotechnology. |
28398314 |
2017 Apr 11; |
| Omicseq: a web-based search engine for exploring omics datasets. |
Sun, Xiaobo; Pittard, William S; Xu, Tianlei; Chen, Li; Zwick, Michael E; Jiang, Xiaoqian; Wang, Fusheng; Qin, Zhaohui S |
Nucleic acids research. |
28402462 |
2017 07 03; |
| Optimizing Interactive Development of Data-Intensive Applications. |
Interlandi, Matteo; Tetali, Sai Deep; Gulzar, Muhammad Ali; Noor, Joseph; Condie, Tyson; Kim, Miryung; Millstein, Todd |
Proceedings of the ... ACM Symposium on Cloud Computing [electronic resource] : SOCC ... ... SoCC (Conference). |
28405637 |
2016 Oct; |
| Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis. |
Agniel, Denis; Cai, Tianxi |
Biometrics. |
28407213 |
2017 Dec; |
| Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides? |
Alves, Vinicius M; Muratov, Eugene N; Zakharov, Alexey; Muratov, Nail N; Andrade, Carolina H; Tropsha, Alexander |
Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association. |
28412406 |
2017 Apr 12; |
| Matrix Metalloproteinases in Myocardial Infarction and Heart Failure. |
DeLeon-Pennell, Kristine Y; Meschiari, Cesar A; Jung, Mira; Lindsey, Merry L |
Progress in molecular biology and translational science. |
28413032 |
2017; |
| Noise-induced symmetry breaking far from equilibrium and the emergence of biological homochirality. |
Jafarpour, Farshid; Biancalani, Tommaso; Goldenfeld, Nigel |
Physical review. E. |
28415353 |
2017 Mar; |
| SCnorm: robust normalization of single-cell RNA-seq data. |
Bacher, Rhonda; Chu, Li-Fang; Leng, Ning; Gasch, Audrey P; Thomson, James A; Stewart, Ron M; Newton, Michael; Kendziorski, Christina |
Nature methods. |
28418000 |
2017 Jun; |
| Validation of the Sepsis MetaScore for Diagnosis of Neonatal Sepsis. |
Sweeney, Timothy E; Wynn, James L; Cernada, María; Serna, Eva; Wong, Hector R; Baker, Henry V; Vento, Máximo; Khatri, Purvesh |
Journal of the Pediatric Infectious Diseases Society. |
28419265 |
2017 Apr 13; |
| Progressive Dictionary Learning with Hierarchical Predictive Structure for Scalable Video Coding. |
Dai, Wenrui; Shen, Yangmei; Xiong, Hongkai; Jiang, Xiaoqian; Zou, Junni; Taubman, David |
IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. |
28422683 |
2017 Apr 12; |
| Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. |
Roy, Sushmita; Sridharan, Rupa |
Genome research. |
28424352 |
2017 Jul; |
| Association of Patient Age With Outcomes of Current-Era, Large-Scale Screening Mammography: Analysis of Data From the National Mammography Database. |
Lee, Cindy S; Sengupta, Debapriya; Bhargavan-Chatfield, Mythreyi; Sickles, Edward A; Burnside, Elizabeth S; Zuley, Margarita L |
JAMA oncology. |
28426842 |
2017 Aug 01; |
| Emerging Global Initiatives in Neurogenetics: The Enhancing Neuroimaging Genetics through Meta-analysis (ENIGMA) Consortium. |
Bearden, Carrie E; Thompson, Paul M |
Neuron. |
28426957 |
2017 Apr 19; |
| Computer-aided discovery of two novel chalcone-like compounds active and selective against Leishmania infantum. |
Gomes, Marcelo N; Alcântara, Laura M; Neves, Bruno J; Melo-Filho, Cleber C; Freitas-Junior, Lucio H; Moraes, Carolina B; Ma, Rui; Franzblau, Scott G; Muratov, Eugene; Andrade, Carolina Horta |
Bioorganic & medicinal chemistry letters. |
28434763 |
2017 Jun 01; |
| The C677T variant in MTHFR modulates associations between brain integrity, mood, and cognitive functioning in old age. |
Roussotte, Florence F; Hua, Xue; Narr, Katherine L; Small, Gary W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative |
Biological psychiatry. Cognitive neuroscience and neuroimaging. |
28435933 |
2017 Apr; |
| IL-10 improves cardiac remodeling after myocardial infarction by stimulating M2 macrophage polarization and fibroblast activation. |
Jung, Mira; Ma, Yonggang; Iyer, Rugmani Padmanabhan; DeLeon-Pennell, Kristine Y; Yabluchanskiy, Andriy; Garrett, Michael R; Lindsey, Merry L |
Basic research in cardiology. |
28439731 |
2017 May; |
| Flexible Analog Search with Kernel PCA Embedded Molecule Vectors. |
Rensi, Stefano; Altman, Russ B |
Computational and structural biotechnology journal. |
28458783 |
2017; |
| Cortical abnormalities in bipolar disorder: an MRI analysis of 6503 individuals from the ENIGMA Bipolar Disorder Working Group. |
Hibar, D P; Westlye, L T; Doan, N T; Jahanshad, N; Cheung, J W; Ching, C R K; Versace, A; Bilderbeck, A C; Uhlmann, A; Mwangi, B; Krämer, B; Overs, B; Hartberg, C B; Abé, C; Dima, D; Grotegerd, D; Sprooten, E; Bøen, E; Jimenez, E; Howells, F M; Delvecchio, G; Temmingh, H; Starke, J; Almeida, J R C; Goikolea, J M; Houenou, J; Beard, L M; Rauer, L; Abramovic, L; Bonnin, M; Ponteduro, M F; Keil, M; Rive, M M; Yao, N; Yalin, N; Najt, P; Rosa, P G; Redlich, R; Trost, S; Hagenaars, S; Fears, S C; Alonso-Lana, S; van Erp, T G M; Nickson, T; Chaim-Avancini, T M; Meier, T B; Elvsåshagen, T; Haukvik, U K; Lee, W H; Schene, A H; Lloyd, A J; Young, A H; Nugent, A; Dale, A M; Pfennig, A; McIntosh, A M; Lafer, B; Baune, B T; Ekman, C J; Zarate, C A; Bearden, C E; Henry, C; Simhandl, C; McDonald, C; Bourne, C; Stein, D J; Wolf, D H; Cannon, D M; Glahn, D C; Veltman, D J; Pomarol-Clotet, E; Vieta, E; Canales-Rodriguez, E J; Nery, F G; Duran, F L S; Busatto, G F; Roberts, G; Pearlson, G D; Goodwin, G M; Kugel, H; Whalley, H C; Ruhe, H G; Soares, J C; Fullerton, J M; Rybakowski, J K; Savitz, J; Chaim, K T; Fatjó-Vilas, M; Soeiro-de-Souza, M G; Boks, M P; Zanetti, M V; Otaduy, M C G; Schaufelberger, M S; Alda, M; Ingvar, M; Phillips, M L; Kempton, M J; Bauer, M; Landén, M; Lawrence, N S; van Haren, N E M; Horn, N R; Freimer, N B; Gruber, O; Schofield, P R; Mitchell, P B; Kahn, R S; Lenroot, R; Machado-Vieira, R; Ophoff, R A; Sarró, S; Frangou, S; Satterthwaite, T D; Hajek, T; Dannlowski, U; Malt, U F; Arolt, V; Gattaz, W F; Drevets, W C; Caseras, X; Agartz, I; Thompson, P M; Andreassen, O A |
Molecular psychiatry. |
28461699 |
2017 May 02; |
| Connectome imaging for mapping human brain pathways. |
Shi, Y; Toga, A W |
Molecular psychiatry. |
28461700 |
2017 Sep; |
| Subcortical brain structure and suicidal behaviour in major depressive disorder: a meta-analysis from the ENIGMA-MDD working group. |
Rentería, M E; Schmaal, L; Hibar, D P; Couvy-Duchesne, B; Strike, L T; Mills, N T; de Zubicaray, G I; McMahon, K L; Medland, S E; Gillespie, N A; Hatton, S N; Lagopoulos, J; Veltman, D J; van der Wee, N; van Erp, T G M; Wittfeld, K; Grabe, H J; Block, A; Hegenscheid, K; Völzke, H; Veer, I M; Walter, H; Schnell, K; Schramm, E; Normann, C; Schoepf, D; Konrad, C; Zurowski, B; Godlewska, B R; Cowen, P J; Penninx, B W J H; Jahanshad, N; Thompson, P M; Wright, M J; Martin, N G; Christensen, H; Hickie, I B |
Translational psychiatry. |
28463239 |
2017 May 02; |
| Associations of the Intellectual Disability Gene MYT1L with Helix-Loop-Helix Gene Expression, Hippocampus Volume and Hippocampus Activation During Memory Retrieval. |
Kepa, Agnieszka; Martinez Medina, Lourdes; Erk, Susanne; Srivastava, Deepak P; Fernandes, Alinda; Toro, Roberto; Lévi, Sabine; Ruggeri, Barbara; Fernandes, Cathy; Degenhardt, Franziska; Witt, Stephanie H; Meyer-Lindenberg, Andreas; Poncer, Jean-Christophe; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Müller, Christian P; Heinz, Andreas; Walter, Henrik; Schumann, Gunter; Desrivières, Sylvane |
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
28470180 |
2017 Dec; |
| Widespread Allelic Heterogeneity in Complex Traits. |
Hormozdiari, Farhad; Zhu, Anthony; Kichaev, Gleb; Ju, Chelsea J-T; Segrè, Ayellet V; Joo, Jong Wha J; Won, Hyejung; Sankararaman, Sriram; Pasaniuc, Bogdan; Shifman, Sagiv; Eskin, Eleazar |
American journal of human genetics. |
28475861 |
2017 May 04; |
| Experimental Design on a Budget for Sparse Linear Models and Applications. |
Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Singh, Vikas |
JMLR workshop and conference proceedings. |
28479945 |
2016 Jun; |
| Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. |
Kleffner, Robert; Flatten, Jeff; Leaver-Fay, Andrew; Baker, David; Siegel, Justin B; Khatib, Firas; Cooper, Seth |
Bioinformatics (Oxford, England). |
28481970 |
2017 Sep 01; |
| Deep learning for healthcare: review, opportunities and challenges. |
Miotto, Riccardo; Wang, Fei; Wang, Shuang; Jiang, Xiaoqian; Dudley, Joel T |
Briefings in bioinformatics. |
28481991 |
2017 May 06; |
| Discovering and linking public omics data sets using the Omics Discovery Index. |
Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; Hermjakob, Henning |
Nature biotechnology. |
28486464 |
2017 05 09; |
| Continuous representations of brain connectivity using spatial point processes. |
Moyer, Daniel; Gutman, Boris A; Faskowitz, Joshua; Jahanshad, Neda; Thompson, Paul M |
Medical image analysis. |
28487128 |
2017 Oct; |
| Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. |
Jagodnik, Kathleen M; Koplev, Simon; Jenkins, Sherry L; Ohno-Machado, Lucila; Paten, Benedict; Schurer, Stephan C; Dumontier, Michel; Verborgh, Ruben; Bui, Alex; Ping, Peipei; McKenna, Neil J; Madduri, Ravi; Pillai, Ajay; Ma'ayan, Avi |
Journal of biomedical informatics. |
28501646 |
2017 07; |
| Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions. |
Xia, Yin; Cai, Tianxi; Cai, T Tony |
Biometrika. |
28502988 |
2015 Jun; |
| L1-Regularized Least Squares for Support Recovery of High Dimensional Single Index Models with Gaussian Designs. |
Neykov, Matey; Liu, Jun S; Cai, Tianxi |
Journal of machine learning research : JMLR. |
28503101 |
2016 May; |
| Heritability of Hippocampal Formation Sub-region Volumes. |
Greenspan, Kiefer S; Arakelian, Claire R; van Erp, Theo G M |
Journal of neurology and neuroscience. |
28503392 |
2016; |
| Diverging volumetric trajectories following pediatric traumatic brain injury. |
Dennis, Emily L; Faskowitz, Joshua; Rashid, Faisal; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Jahanshad, Neda; Thompson, Paul M; Asarnow, Robert F |
NeuroImage. Clinical. |
28507895 |
2017; |
| The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. |
Vizcaíno, Juan Antonio; Mayer, Gerhard; Perkins, Simon; Barsnes, Harald; Vaudel, Marc; Perez-Riverol, Yasset; Ternent, Tobias; Uszkoreit, Julian; Eisenacher, Martin; Fischer, Lutz; Rappsilber, Juri; Netz, Eugen; Walzer, Mathias; Kohlbacher, Oliver; Leitner, Alexander; Chalkley, Robert J; Ghali, Fawaz; Martínez-Bartolomé, Salvador; Deutsch, Eric W; Jones, Andrew R |
Molecular & cellular proteomics : MCP. |
28515314 |
2017 Jul; |
| Using high-resolution variant frequencies to empower clinical genome interpretation. |
Whiffin, Nicola; Minikel, Eric; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel; Ware, James S |
Genetics in medicine : official journal of the American College of Medical Genetics. |
28518168 |
2017 Oct; |
| MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. |
Bernstein, Matthew N; Doan, AnHai; Dewey, Colin N |
Bioinformatics (Oxford, England). |
28535296 |
2017 Sep 15; |
| Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach. |
Wallace, Byron C; Noel-Storr, Anna; Marshall, Iain J; Cohen, Aaron M; Smalheiser, Neil R; Thomas, James |
Journal of the American Medical Informatics Association : JAMIA. |
28541493 |
2017 Nov 01; |
| Prefrontal cortical thinning links to negative symptoms in schizophrenia via the ENIGMA consortium. |
Walton, E; Hibar, D P; van Erp, T G M; Potkin, S G; Roiz-Santiañez, R; Crespo-Facorro, B; Suarez-Pinilla, P; van Haren, N E M; de Zwarte, S M C; Kahn, R S; Cahn, W; Doan, N T; Jørgensen, K N; Gurholt, T P; Agartz, I; Andreassen, O A; Westlye, L T; Melle, I; Berg, A O; Morch-Johnsen, L; Færden, A; Flyckt, L; Fatouros-Bergman, H; Karolinska Schizophrenia Project Consortium (KaSP); Jönsson, E G; Hashimoto, R; Yamamori, H; Fukunaga, M; Jahanshad, N; De Rossi, P; Piras, F; Banaj, N; Spalletta, G; Gur, R E; Gur, R C; Wolf, D H; Satterthwaite, T D; Beard, L M; Sommer, I E; Koops, S; Gruber, O; Richter, A; Krämer, B; Kelly, S; Donohoe, G; McDonald, C; Cannon, D M; Corvin, A; Gill, M; Di Giorgio, A; Bertolino, A; Lawrie, S; Nickson, T; Whalley, H C; Neilson, E; Calhoun, V D; Thompson, P M; Turner, J A; Ehrlich, S |
Psychological medicine. |
28545597 |
2018 Jan; |
| Statistical Methods for Latent Class Quantitative Trait Loci Mapping. |
Ye, Shuyun; Bacher, Rhonda; Keller, Mark P; Attie, Alan D; Kendziorski, Christina |
Genetics. |
28550015 |
2017 07; |
| VISAGE: Interactive Visual Graph Querying. |
Pienta, Robert; Navathe, Shamkant; Tamersoy, Acar; Tong, Hanghang; Endert, Alex; Chau, Duen Horng |
AVI : proceedings of the Workshop on Advanced Visual Interfaces. AVI (Conference). |
28553670 |
2016 Jun; |
| Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics. |
Barger, Jamie L; Vann, James M; Cray, Nicole L; Pugh, Thomas D; Mastaloudis, Angela; Hester, Shelly N; Wood, Steven M; Newton, Michael A; Weindruch, Richard; Prolla, Tomas A |
Aging cell. |
28556428 |
2017 Aug; |
| Structure-Leveraged Methods in Breast Cancer Risk Prediction. |
Fan, Jun; Wu, Yirong; Yuan, Ming; Page, David; Liu, Jie; Ong, Irene M; Peissig, Peggy; Burnside, Elizabeth |
Journal of machine learning research : JMLR. |
28559747 |
2016 Dec; |
| A review of active learning approaches to experimental design for uncovering biological networks. |
Sverchkov, Yuriy; Craven, Mark |
PLoS computational biology. |
28570593 |
2017 Jun; |
| Cultural Shift or Linguistic Drift? Comparing Two Computational Measures of Semantic Change. |
Hamilton, William L; Leskovec, Jure; Jurafsky, Dan |
Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing. |
28580459 |
2016 Nov; |
| Genetic influences on individual differences in longitudinal changes in global and subcortical brain volumes: Results of the ENIGMA plasticity working group. |
Brouwer, Rachel M; Panizzon, Matthew S; Glahn, David C; Hibar, Derrek P; Hua, Xue; Jahanshad, Neda; Abramovic, Lucija; de Zubicaray, Greig I; Franz, Carol E; Hansell, Narelle K; Hickie, Ian B; Koenis, Marinka M G; Martin, Nicholas G; Mather, Karen A; McMahon, Katie L; Schnack, Hugo G; Strike, Lachlan T; Swagerman, Suzanne C; Thalamuthu, Anbupalam; Wen, Wei; Gilmore, John H; Gogtay, Nitin; Kahn, René S; Sachdev, Perminder S; Wright, Margaret J; Boomsma, Dorret I; Kremen, William S; Thompson, Paul M; Hulshoff Pol, Hilleke E |
Human brain mapping. |
28580697 |
2017 Sep; |
| QSAR-driven design, synthesis and discovery of potent chalcone derivatives with antitubercular activity. |
Gomes, Marcelo N; Braga, Rodolpho C; Grzelak, Edyta M; Neves, Bruno J; Muratov, Eugene; Ma, Rui; Klein, Larry L; Cho, Sanghyun; Oliveira, Guilherme R; Franzblau, Scott G; Andrade, Carolina Horta |
European journal of medicinal chemistry. |
28582669 |
2017 May 10; |
| Dead simple OWL design patterns. |
Osumi-Sutherland, David; Courtot, Melanie; Balhoff, James P; Mungall, Christopher |
Journal of biomedical semantics. |
28583177 |
2017 Jun 05; |
| Predicting attention-deficit/hyperactivity disorder severity from psychosocial stress and stress-response genes: a random forest regression approach. |
van der Meer, D; Hoekstra, P J; van Donkelaar, M; Bralten, J; Oosterlaan, J; Heslenfeld, D; Faraone, S V; Franke, B; Buitelaar, J K; Hartman, C A |
Translational psychiatry. |
28585928 |
2017 Jun 06; |
| Female-specific association of NOS1 genotype with white matter microstructure in ADHD patients and controls. |
van Ewijk, Hanneke; Bralten, Janita; van Duin, Esther D A; Hakobjan, Marina; Buitelaar, Jan K; Heslenfeld, Dirk J; Hoekstra, Pieter J; Hartman, Catharina; Hoogman, Martine; Oosterlaan, Jaap; Franke, Barbara |
Journal of child psychology and psychiatry, and allied disciplines. |
28589541 |
2017 Aug; |
| NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. |
Martínez-Romero, Marcos; Jonquet, Clement; O'Connor, Martin J; Graybeal, John; Pazos, Alejandro; Musen, Mark A |
Journal of biomedical semantics. |
28592275 |
2017 Jun 07; |
| Association of longitudinal white matter degeneration and cerebrospinal fluid biomarkers of neurodegeneration, inflammation and Alzheimer's disease in late-middle-aged adults. |
Racine, Annie M; Merluzzi, Andrew P; Adluru, Nagesh; Norton, Derek; Koscik, Rebecca L; Clark, Lindsay R; Berman, Sara E; Nicholas, Christopher R; Asthana, Sanjay; Alexander, Andrew L; Blennow, Kaj; Zetterberg, Henrik; Kim, Won Hwa; Singh, Vikas; Carlsson, Cynthia M; Bendlin, Barbara B; Johnson, Sterling C |
Brain imaging and behavior. |
28600739 |
2017 Jun 09; |
| The Arf6 activator Efa6/PSD3 confers regional specificity and modulates ethanol consumption in Drosophila and humans. |
Gonzalez, D A; Jia, T; Pinzón, J H; Acevedo, S F; Ojelade, S A; Xu, B; Tay, N; Desrivières, S; Hernandez, J L; Banaschewski, T; Büchel, C; Bokde, A L W; Conrod, P J; Flor, H; Frouin, V; Gallinat, J; Garavan, H; Gowland, P A; Heinz, A; Ittermann, B; Lathrop, M; Martinot, J-L; Paus, T; Smolka, M N; IMAGEN Consortium; Rodan, A R; Schumann, G; Rothenfluh, A |
Molecular psychiatry. |
28607459 |
2017 Jun 13; |
| Characterising omission errors in everyday task completion and cognitive correlates in individuals with mild cognitive impairment and dementia. |
Beaver, Jenna; Wilson, Kaci B; Schmitter-Edgecombe, Maureen |
Neuropsychological rehabilitation |
28617099 |
2019 Jun |
| ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis. |
Zhang, Guohao; Kochunov, Peter; Hong, Elliot; Kelly, Sinead; Whelan, Christopher; Jahanshad, Neda; Thompson, Paul; Chen, Jian |
BMC bioinformatics. |
28617224 |
2017 Jun 06; |
| Psychosocial Stress and Brain Function in Adolescent Psychopathology. |
Quinlan, Erin Burke; Cattrell, Anna; Jia, Tianye; Artiges, Eric; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Conrod, Patricia J; Desrivieres, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Glennon, Jeffrey C; Buitelaar, Jan K; Happé, Francesca; Loth, Eva; Barker, Edward D; Schumann, Gunter; IMAGEN Consortium |
The American journal of psychiatry. |
28618856 |
2017 08 01; |
| Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). |
Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier |
Journal of biomedical informatics. |
28625880 |
; |
| Big Data Analytics with Datalog Queries on Spark. |
Shkapsky, Alexander; Yang, Mohan; Interlandi, Matteo; Chiu, Hsuan; Condie, Tyson; Zaniolo, Carlo |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
28626296 |
2016 Jun-Jul; |
| Temporally Factorized Network Modeling for Evolutionary Network Analysis. |
Yu, Wenchao; Aggarwal, Charu C; Wang, Wei |
Proceedings of the ... International Conference on Web Search & Data Mining. International Conference on Web Search & Data Mining. |
28626845 |
2017 Feb; |
| Structural complexity and molecular heterogeneity of a butterfly ejaculate reflect a complex history of selection. |
Meslin, Camille; Cherwin, Tamara S; Plakke, Melissa S; Hill, Jason; Small, Brandon S; Goetz, Breanna J; Wheat, Christopher W; Morehouse, Nathan I; Clark, Nathan L |
Proceedings of the National Academy of Sciences of the United States of America |
28630352 |
2017 Jul 03 |
| ClinVar data parsing. |
Zhang, Xiaolei; Minikel, Eric V; O'Donnell-Luria, Anne H; MacArthur, Daniel G; Ware, James S; Weisburd, Ben |
Wellcome open research. |
28630944 |
2017; |
| Anxiety modulates the relation between attention-deficit/hyperactivity disorder severity and working memory-related brain activity. |
van der Meer, Dennis; Hoekstra, Pieter J; van Rooij, Daan; Winkler, Anderson M; van Ewijk, Hanneke; Heslenfeld, Dirk J; Oosterlaan, Jaap; Faraone, Stephen V; Franke, Barbara; Buitelaar, Jan K; Hartman, Catharina A |
The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. |
28635543 |
2017 Mar 01; |
| Predicting structured metadata from unstructured metadata. |
Posch, Lisa; Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier |
Database : the journal of biological databases and curation. |
28637268 |
; |
| UpSetR: an R package for the visualization of intersecting sets and their properties. |
Conway, Jake R; Lex, Alexander; Gehlenborg, Nils |
Bioinformatics (Oxford, England). |
28645171 |
2017 Sep 15; |
| Machine Learning Consensus Scoring Improves Performance Across Targets in Structure-Based Virtual Screening. |
Ericksen, Spencer S; Wu, Haozhen; Zhang, Huikun; Michael, Lauren A; Newton, Michael A; Hoffmann, F Michael; Wildman, Scott A |
Journal of chemical information and modeling. |
28654262 |
2017 Jul 24; |
| Inducing Domain-Specific Sentiment Lexicons from Unlabeled Corpora. |
Hamilton, William L; Clark, Kevin; Leskovec, Jure; Jurafsky, Dan |
Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing. |
28660257 |
2016 Nov; |
| Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. |
McMurry, Julie A; Juty, Nick; Blomberg, Niklas; Burdett, Tony; Conlin, Tom; Conte, Nathalie; Courtot, Mélanie; Deck, John; Dumontier, Michel; Fellows, Donal K; Gonzalez-Beltran, Alejandra; Gormanns, Philipp; Grethe, Jeffrey; Hastings, Janna; Hériché, Jean-Karim; Hermjakob, Henning; Ison, Jon C; Jimenez, Rafael C; Jupp, Simon; Kunze, John; Laibe, Camille; Le Novère, Nicolas; Malone, James; Martin, Maria Jesus; McEntyre, Johanna R; Morris, Chris; Muilu, Juha; Müller, Wolfgang; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Sariyar, Murat; Snoep, Jacky L; Soiland-Reyes, Stian; Stanford, Natalie J; Swainston, Neil; Washington, Nicole; Williams, Alan R; Wimalaratne, Sarala M; Winfree, Lilly M; Wolstencroft, Katherine; Goble, Carole; Mungall, Christopher J; Haendel, Melissa A; Parkinson, Helen |
PLoS biology |
28662064 |
2017 Jun |
| PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance. |
Nadon, Celine; Van Walle, Ivo; Gerner-Smidt, Peter; Campos, Josefina; Chinen, Isabel; Concepcion-Acevedo, Jeniffer; Gilpin, Brent; Smith, Anthony M; Man Kam, Kai; Perez, Enrique; Trees, Eija; Kubota, Kristy; Takkinen, Johanna; Nielsen, Eva Møller; Carleto |
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. |
28662764 |
2017 06 08; |
| A Simple Approach to Shared Decision Making in Cancer Screening. |
Schrager, Sarina B; Phillips, Gina; Burnside, Elizabeth |
Family practice management. |
28671358 |
2017 May/Jun; |
| The significance of negative correlations in brain connectivity. |
Zhan, Liang; Jenkins, Lisanne M; Wolfson, Ouri E; GadElkarim, Johnson Jonaris; Nocito, Kevin; Thompson, Paul M; Ajilore, Olusola A; Chung, Moo K; Leow, Alex D |
The Journal of comparative neurology |
28675490 |
2017 Oct 15 |
| An exploration of crowdsourcing citation screening for systematic reviews. |
Mortensen, Michael L; Adam, Gaelen P; Trikalinos, Thomas A; Kraska, Tim; Wallace, Byron C |
Research synthesis methods. |
28677322 |
2017 Jul 04; |
| Origins of lymphatic and distant metastases in human colorectal cancer. |
Naxerova, Kamila; Reiter, Johannes G; Brachtel, Elena; Lennerz, Jochen K; van de Wetering, Marc; Rowan, Andrew; Cai, Tianxi; Clevers, Hans; Swanton, Charles; Nowak, Martin A; Elledge, Stephen J; Jain, Rakesh K |
Science (New York, N.Y.). |
28684519 |
2017 07 07; |
| Large-scale physical activity data reveal worldwide activity inequality. |
Althoff, Tim; Sosi?, Rok; Hicks, Jennifer L; King, Abby C; Delp, Scott L; Leskovec, Jure |
Nature. |
28693034 |
2017 07 20; |
| Simulating ideal assistive devices to reduce the metabolic cost of walking with heavy loads. |
Dembia, Christopher L; Silder, Amy; Uchida, Thomas K; Hicks, Jennifer L; Delp, Scott L |
PloS one. |
28700630 |
2017; |
| A graph extension of the positional Burrows-Wheeler transform and its applications. |
Novak, Adam M; Garrison, Erik; Paten, Benedict |
Algorithms for molecular biology : AMB. |
28702075 |
2017; |
| Gramene Database: Navigating Plant Comparative Genomics Resources. |
Gupta, Parul; Naithani, Sushma; Tello-Ruiz, Marcela Karey; Chougule, Kapeel; D'Eustachio, Peter; Fabregat, Antonio; Jiao, Yinping; Keays, Maria; Lee, Young Koung; Kumari, Sunita; Mulvaney, Joseph; Olson, Andrew; Preece, Justin; Stein, Joshua; Wei, Sharon; Weiser, Joel; Huerta, Laura; Petryszak, Robert; Kersey, Paul; Stein, Lincoln D; Ware, Doreen; Jaiswal, Pankaj |
Current plant biology. |
28713666 |
2016 Nov; |
| Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM. |
Gutierrez-Barragan, Felipe; Ithapu, Vamsi K; Hinrichs, Chris; Maumet, Camille; Johnson, Sterling C; Nichols, Thomas E; Singh, Vikas; Alzheimer's Disease Neuroimaging Initiative |
NeuroImage. |
28720551 |
2017 Oct 01; |
| Shallow Representation Learning via Kernel PCA Improves QSAR Modelability. |
Rensi, Stefano E; Altman, Russ B |
Journal of chemical information and modeling. |
28727421 |
; |
| Modernization of Enoxaparin Molecular Weight Determination Using Homogeneous Standards. |
Arnold, Katelyn M; Capuzzi, Stephen J; Xu, Yongmei; Muratov, Eugene N; Carrick, Kevin; Szajek, Anita Y; Tropsha, Alexander; Liu, Jian |
Pharmaceuticals (Basel, Switzerland). |
28737679 |
2017 Jul 22; |
| Testing the comparative effects of physical activity advice by humans vs. computers in underserved populations: The COMPASS trial design, methods, and baseline characteristics. |
King, Abby C; Campero, Ines; Sheats, Jylana L; Castro Sweet, Cynthia M; Garcia, Dulce; Chazaro, Aldo; Blanco, German; Hauser, Michelle; Fierros, Fernando; Ahn, David K; Diaz, Jose; Done, Monica; Fernandez, Juan; Bickmore, Timothy |
Contemporary clinical trials. |
28739541 |
2017 Oct; |
| Mobile Monitoring of Traumatic Brain Injury in Older Adults: Challenges and Opportunities. |
Irimia, Andrei; Wei, Susan; Lu, Nanshu; Moore, Constance M; Kennedy, David N |
Neuroinformatics. |
28748392 |
2017 Jul; |
| Principles of Dataset Versioning: Exploring the Recreation/Storage Tradeoff. |
Bhattacherjee, Souvik; Chavan, Amit; Huang, Silu; Deshpande, Amol; Parameswaran, Aditya |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
28752014 |
2015 Aug; |
| Chalcone Derivatives: Promising Starting Points for Drug Design. |
Gomes, Marcelo N; Muratov, Eugene N; Pereira, Maristela; Peixoto, Josana C; Rosseto, Lucimar P; Cravo, Pedro V L; Andrade, Carolina H; Neves, Bruno J |
Molecules (Basel, Switzerland). |
28757583 |
2017 Jul 25; |
| Genome-wide association analysis identifies common variants influencing infant brain volumes. |
Xia, K; Zhang, J; Ahn, M; Jha, S; Crowley, J J; Szatkiewicz, J; Li, T; Zou, F; Zhu, H; Hibar, D; Thompson, P; ENIGMA Consortium; Sullivan, P F; Styner, M; Gilmore, J H; Knickmeyer, R C |
Translational psychiatry. |
28763065 |
2017 Aug 01; |
| Effect of tobacco smoking on frontal cortical thickness development: A longitudinal study in a mixed cohort of ADHD-affected and -unaffected youth. |
Akkermans, Sophie E A; van Rooij, Daan; Rommelse, Nanda; Hartman, Catharina A; Hoekstra, Pieter J; Franke, Barbara; Mennes, Maarten; Buitelaar, Jan K |
European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. |
28764867 |
2017 10; |
| Association of White Matter With Core Cognitive Deficits in Patients With Schizophrenia. |
Kochunov, Peter; Coyle, Thomas R; Rowland, Laura M; Jahanshad, Neda; Thompson, Paul M; Kelly, Sinead; Du, Xiaoming; Sampath, Hemalatha; Bruce, Heather; Chiappelli, Joshua; Ryan, Meghann; Fisseha, Feven; Savransky, Anya; Adhikari, Bhim; Chen, Shuo; Paciga, Sara A; Whelan, Christopher D; Xie, Zhiyong; Hyde, Craig L; Chen, Xing; Schubert, Christian R; O'Donnell, Patricio; Hong, L Elliot |
JAMA psychiatry. |
28768312 |
2017 Sep 01; |
| Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data. |
Shin, Sunyoung; Kele?, Sündüz |
Statistics in biosciences. |
28781711 |
2017 Jun; |
| Consistency of BRCA1 and BRCA2 Variant Classifications Among Clinical Diagnostic Laboratories. |
Lincoln, Stephen E; Yang, Shan; Cline, Melissa S; Kobayashi, Yuya; Zhang, Can; Topper, Scott; Haussler, David; Paten, Benedict; Nussbaum, Robert L |
JCO precision oncology. |
28782058 |
2017 Jul; |
| Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoid-derived hematologic malignancies. |
Kurtz, Stephen E; Eide, Christopher A; Kaempf, Andy; Khanna, Vishesh; Savage, Samantha L; Rofelty, Angela; English, Isabel; Ho, Hibery; Pandya, Ravi; Bolosky, William J; Poon, Hoifung; Deininger, Michael W; Collins, Robert; Swords, Ronan T; Watts, Justin; Pollyea, Daniel A; Medeiros, Bruno C; Traer, Elie; Tognon, Cristina E; Mori, Motomi; Druker, Brian J; Tyner, Jeffrey W |
Proceedings of the National Academy of Sciences of the United States of America. |
28784769 |
2017 Sep 05; |
| PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension. |
Chen, Feng; Wang, Chenghong; Dai, Wenrui; Jiang, Xiaoqian; Mohammed, Noman; Al Aziz, Md Momin; Sadat, Md Nazmus; Sahinalp, Cenk; Lauter, Kristin; Wang, Shuang |
BMC medical genomics. |
28786365 |
2017 Jul 26; |
| Utility of BI-RADS Assessment Category 4 Subdivisions for Screening Breast MRI. |
Strigel, Roberta M; Burnside, Elizabeth S; Elezaby, Mai; Fowler, Amy M; Kelcz, Frederick; Salkowski, Lonie R; DeMartini, Wendy B |
AJR. American journal of roentgenology. |
28792802 |
2017 Jun; |
| Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance. |
Emad, Amin; Cairns, Junmei; Kalari, Krishna R; Wang, Liewei; Sinha, Saurabh |
Genome biology. |
28800781 |
2017 Aug 11; |
| Precision Diagnosis Of Melanoma And Other Skin Lesions From Digital Images. |
Bhattacharya, Abhishek; Young, Albert; Wong, Andrew; Stalling, Simone; Wei, Maria; Hadley, Dexter |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
28815132 |
2017; |
| D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization. |
Sharma, Deepak K; Solbrig, Harold R; Prud'hommeaux, Eric; Lee, Kate; Pathak, Jyotishman; Jiang, Guoqian |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
28815140 |
2017; |
| SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort. |
Rueda, Manuel; Torkamani, Ali |
BMC bioinformatics. |
28821228 |
2017 Aug 18; |
| Anxiety-related experience-dependent white matter structural differences in adolescence: A monozygotic twin difference approach. |
Adluru, Nagesh; Luo, Zhan; Van Hulle, Carol A; Schoen, Andrew J; Davidson, Richard J; Alexander, Andrew L; Goldsmith, H Hill |
Scientific reports. |
28821748 |
2017 Aug 18; |
| Long Noncoding RNA Facilitated Gene Therapy Reduces Atherosclerosis in a Murine Model of Familial Hypercholesterolemia. |
Tontonoz, Peter; Wu, Xiaohui; Jones, Marius; Zhang, Zhengyi; Salisbury, David; Sallam, Tamer |
Circulation. |
28827223 |
2017 Aug 22; |
| Refinement by integration: aggregated effects of multimodal imaging markers on adult ADHD. |
Wolfers, Thomas; Arenas, Alberto Llera; Onnink, A Marten H; Dammers, Janneke; Hoogman, Martine; Zwiers, Marcel P; Buitelaar, Jan K; Franke, Barbara; Marquand, Andre F; Beckmann, Christian F |
Journal of psychiatry & neuroscience : JPN. |
28832320 |
2017 Nov; |
| High-Definition Medicine. |
Torkamani, Ali; Andersen, Kristian G; Steinhubl, Steven R; Topol, Eric J |
Cell. |
28841416 |
2017 Aug 24; |
| Apolipoprotein E Genotype and Sex Risk Factors for Alzheimer Disease: A Meta-analysis. |
Neu, Scott C; Pa, Judy; Kukull, Walter; Beekly, Duane; Kuzma, Amanda; Gangadharan, Prabhakaran; Wang, Li-San; Romero, Klaus; Arneric, Stephen P; Redolfi, Alberto; Orlandi, Daniele; Frisoni, Giovanni B; Au, Rhoda; Devine, Sherral; Auerbach, Sanford; Espinosa, Ana; Boada, Mercè; Ruiz, Agustín; Johnson, Sterling C; Koscik, Rebecca; Wang, Jiun-Jie; Hsu, Wen-Chuin; Chen, Yao-Liang; Toga, Arthur W |
JAMA neurology. |
28846757 |
2017 Oct 01; |
| Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. |
Deutsch, Eric W; Orchard, Sandra; Binz, Pierre-Alain; Bittremieux, Wout; Eisenacher, Martin; Hermjakob, Henning; Kawano, Shin; Lam, Henry; Mayer, Gerhard; Menschaert, Gerben; Perez-Riverol, Yasset; Salek, Reza M; Tabb, David L; Tenzer, Stefan; Vizcaíno, Juan Antonio; Walzer, Mathias; Jones, Andrew R |
Journal of proteome research. |
28849660 |
2017 Dec 01; |
| Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Lundberg, Emma K; Overall, Christopher M; Deutsch, Eric W |
Journal of proteome research. |
28853897 |
2017 Dec 01; |
| A signal-based method for finding driver modules of breast cancer metastasis to the lung. |
Yan, Gaibo; Chen, Vicky; Lu, Xinghua; Lu, Songjian |
Scientific reports. |
28855549 |
2017 08 30; |
| Data-analysis strategies for image-based cell profiling. |
Caicedo, Juan C; Cooper, Sam; Heigwer, Florian; Warchal, Scott; Qiu, Peng; Molnar, Csaba; Vasilevich, Aliaksei S; Barry, Joseph D; Bansal, Harmanjit Singh; Kraus, Oren; Wawer, Mathias; Paavolainen, Lassi; Herrmann, Markus D; Rohban, Mohammad; Hung, Jane; Hennig, Holger; Concannon, John; Smith, Ian; Clemons, Paul A; Singh, Shantanu; Rees, Paul; Horvath, Peter; Linington, Roger G; Carpenter, Anne E |
Nature methods. |
28858338 |
2017 Aug 31; |
| Phelan-McDermid syndrome data network: Integrating patient reported outcomes with clinical notes and curated genetic reports. |
Kothari, Cartik; Wack, Maxime; Hassen-Khodja, Claire; Finan, Sean; Savova, Guergana; O'Boyle, Megan; Bliss, Geraldine; Cornell, Andria; Horn, Elizabeth J; Davis, Rebecca; Jacobs, Jacquelyn; Kohane, Isaac; Avillach, Paul |
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. |
28862395 |
2017 Sep 01; |
| Using information technology to improve surveillance of antimicrobial resistance in South East Asia. |
Vong, Sirenda; Anciaux, Amaury; Hulth, Anette; Stelling, John; Thamlikitkul, Visanu; Gupta, Sunil; Fuks, Jonas M; Walia, K?mini; Rattanumpawan, Pinyo; Eremin, Sergey; Tisocki, Klara; Sedai, Tika R; Sharma, Anuj |
BMJ (Clinical research ed.). |
28874344 |
2017 09 05; |
| Overdominant Effect of a CHRNA4 Polymorphism on Cingulo-Opercular Network Activity and Cognitive Control. |
Sadaghiani, Sepideh; Ng, Bernard; Altmann, Andre; Poline, Jean-Baptiste; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Gallinat, Jürgen; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Lemaitre, Hervé; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Napolioni, Valerio; Greicius, Michael |
The Journal of neuroscience : the official journal of the Society for Neuroscience. |
28877969 |
2017 10 04; |
| Modelling haplotypes with respect to reference cohort variation graphs. |
Rosen, Yohei; Eizenga, Jordan; Paten, Benedict |
Bioinformatics (Oxford, England). |
28881971 |
2017 Jul 15; |
| Predicting multicellular function through multi-layer tissue networks. |
Zitnik, Marinka; Leskovec, Jure |
Bioinformatics (Oxford, England). |
28881986 |
2017 Jul 15; |
| Unique transcriptomic response to sepsis is observed among patients of different age groups. |
Raymond, Steven L; López, María Cecilia; Baker, Henry V; Larson, Shawn D; Efron, Philip A; Sweeney, Timothy E; Khatri, Purvesh; Moldawer, Lyle L; Wynn, James L |
PloS one. |
28886074 |
2017; |
| ARCHITECTURAL PATTERNS FOR DIFFERENTIAL DIAGNOSIS OF PROLIFERATIVE BREAST LESIONS FROM HISTOPATHOLOGICAL IMAGES. |
Nguyen, L; Tosun, A B; Fine, J L; Taylor, D L; Chennubhotla, S C |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
28890755 |
2017 Apr; |
| Comments on ''Personalized dose finding using outcome weighted learning''. |
Fan, Jun; Yuan, Ming |
Journal of the American Statistical Association. |
28919653 |
2017; |
| Precision annotation of digital samples in NCBI's gene expression omnibus. |
Hadley, Dexter; Pan, James; El-Sayed, Osama; Aljabban, Jihad; Aljabban, Imad; Azad, Tej D; Hadied, Mohamad O; Raza, Shuaib; Rayikanti, Benjamin Abhishek; Chen, Bin; Paik, Hyojung; Aran, Dvir; Spatz, Jordan; Himmelstein, Daniel; Panahiazar, Maryam; Bhattacharya, Sanchita; Sirota, Marina; Musen, Mark A; Butte, Atul J |
Scientific data. |
28925997 |
2017 Sep 19; |
| Periodontal-induced chronic inflammation triggers macrophage secretion of Ccl12 to inhibit fibroblast-mediated cardiac wound healing. |
DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ero, Osasere K; Cates, Courtney A; Flynn, Elizabeth R; Cannon, Presley L; Jung, Mira; Shannon, De'Aries; Garrett, Michael R; Buchanan, William; Hall, Michael E; Ma, Yonggang; Lindsey, Merry L |
JCI insight. |
28931761 |
2017 Sep 21; |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
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eLife. |
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2017 Sep 22; |
| The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays. |
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Journal of proteome research. |
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2017 Dec 01; |
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Genome medicine. |
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2017 Sep 22; |
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Information processing in medical imaging : proceedings of the ... conference. |
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2017 Jun; |
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Information processing in medical imaging : proceedings of the ... conference. |
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2017 Jun; |
| DNA repair deficiency biomarkers and the 70-gene ultra-high risk signature as predictors of veliparib/carboplatin response in the I-SPY 2 breast cancer trial. |
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NPJ breast cancer. |
28948212 |
2017; |
| Optimizing Open-Ended Crowdsourcing: The Next Frontier in Crowdsourced Data Management. |
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Bulletin of the Technical Committee on Data Engineering. |
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Bioinformatics (Oxford, England). |
28957495 |
2017 Oct 01; |
| Algorithmic Advances and Applications from RECOMB 2017. |
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Cell systems. |
28957652 |
2017 Sep 27; |
| EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING. |
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Proceedings. IEEE International Symposium on Biomedical Imaging. |
28959379 |
2017 Apr; |
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The international journal of behavioral nutrition and physical activity. |
28962580 |
2017 Sep 29; |
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The spine journal : official journal of the North American Spine Society. |
28962914 |
2018 Jan; |
| Causal Discovery from Nonstationary/Heterogeneous Data: Skeleton Estimation and Orientation Determination. |
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IJCAI : proceedings of the conference. |
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2017 Aug; |
| IPI59: An Actionable Biomarker to Improve Treatment Response in Serous Ovarian Carcinoma Patients. |
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Statistics in biosciences. |
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2017 Jun; |
| Structural Neuroimaging of Anorexia Nervosa: Future Directions in the Quest for Mechanisms Underlying Dynamic Alterations. |
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Biological psychiatry. |
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| Applying family analyses to electronic health records to facilitate genetic research. |
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Bioinformatics (Oxford, England). |
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| Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma. |
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BMC bioinformatics. |
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2017 Oct 03; |
| How Gamification Affects Physical Activity: Large-scale Analysis of Walking Challenges in a Mobile Application. |
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Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
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2017 Apr; |
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Arthritis care & research. |
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2017 Oct 09; |
| Ultrafast Comparison of Personal Genomes via Precomputed Genome Fingerprints. |
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Frontiers in genetics. |
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| Co-expression networks reveal the tissue-specific regulation of transcription and splicing. |
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Genome research. |
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2017 Nov; |
| Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis. |
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Genome research. |
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2017 Nov; |
| Dynamic landscape and regulation of RNA editing in mammals. |
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Nature. |
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2017 Oct 11; |
| Genetic effects on gene expression across human tissues. |
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| Landscape of X chromosome inactivation across human tissues. |
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Nature. |
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Journal of the American Medical Informatics Association : JAMIA. |
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2017 Sep 13; |
| TeachEnG: a Teaching Engine for Genomics. |
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Bioinformatics (Oxford, England). |
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| Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling. |
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Bioinformatics (Oxford, England). |
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2017 Dec 01; |
| County-level assessment of United States kindergarten vaccination rates for measles mumps rubella (MMR) for the 2014-2015 school year. |
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Stroke. |
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Nature communications. |
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2017 Oct 20; |
| Pharmacogenomic Discovery to Function and Mechanism: Breast Cancer as a Case Study. |
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Clinical pharmacology and therapeutics. |
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2018 Feb; |
| Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach. |
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IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. |
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2018 Feb; |
| PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals. |
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Cell. |
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Journal of Alzheimer's disease : JAD. |
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2017; |
| Grappling with the Future Use of Big Data for Translational Medicine and Clinical Care. |
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Yearbook of medical informatics. |
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2017 Aug; |
| An Assessment of Imaging Informatics for Precision Medicine in Cancer. |
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Yearbook of medical informatics. |
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2017 Aug; |
| Imagining the ''open'' university: Sharing scholarship to improve research and education. |
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PLoS biology. |
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Nucleic acids research. |
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| To Three or not to Three: Improving Human Computation Game Onboarding with a Three-Star System. |
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Proceedings of the SIGCHI conference on human factors in computing systems . CHI Conference. |
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GigaScience. |
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2017 Nov 01; |
| Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images. |
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Cancer research. |
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2017 Nov 01; |
| Aggregating and Predicting Sequence Labels from Crowd Annotations. |
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Proceedings of the conference. Association for Computational Linguistics. Meeting. |
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2017; |
| Pharmacogenomics: Precision Medicine and Drug Response. |
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Mayo Clinic proceedings. |
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2017 Nov; |
| Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase. |
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Cell chemical biology. |
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| Cardiac macrophage biology in the steady-state heart, the aging heart, and following myocardial infarction. |
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Translational research : the journal of laboratory and clinical medicine. |
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Briefings in bioinformatics. |
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Biostatistics (Oxford, England). |
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| Enabling phenotypic big data with PheNorm. |
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Journal of the American Medical Informatics Association : JAMIA. |
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| Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics. |
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Molecular cancer research : MCR. |
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| Altered connectivity patterns among resting state networks in patients with ischemic white matter lesions. |
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Brain imaging and behavior. |
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| Cortical and Subcortical Brain Morphometry Differences Between Patients With Autism Spectrum Disorder and Healthy Individuals Across the Lifespan: Results From the ENIGMA ASD Working Group. |
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The American journal of psychiatry. |
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| Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure. |
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Scientific reports. |
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| Multi-modal Registration Improves Group Discrimination in Pediatric Traumatic Brain Injury. |
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Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. |
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| Diffusion MRI in pediatric brain injury. |
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Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery. |
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2017 Oct; |
| A Visual Analytics Approach to Understanding Care Process Variation and Conformance. |
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Proceedings of the 2015 Workshop on Visual Analytics in Healthcare. |
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| A volumetric conformal mapping approach for clustering white matter fibers in the brain. |
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Spectral and shape analysis in medical imaging : first International Workshop, SeSAMI 2016, held in conjunction with MICCAI 2016, Athens, Greece, October 21, 2016 : revised selected papers. SeSAMI (Workshop) (1st : 2016 : Athens, Greece). |
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2016 Oct; |
| Neuroimaging genomics in psychiatry-a translational approach. |
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Genome medicine. |
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2017 Nov 27; |
| Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies. |
Kochunov, Peter; Dickie, Erin W; Viviano, Joseph D; Turner, Jessica; Kingsley, Peter B; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Fieremans, Els; Novikov, Dmitry; Veraart, Jelle; Hong, Elliot L; Malhotra, Anil K; Buchanan, Robert W; Chavez, Sofia; Voineskos, Aristotle N |
Human brain mapping. |
29181875 |
2018 Feb; |
| Reactome diagram viewer: data structures and strategies to boost performance. |
Fabregat, Antonio; Sidiropoulos, Konstantinos; Viteri, Guilherme; Marin-Garcia, Pablo; Ping, Peipei; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
Bioinformatics (Oxford, England). |
29186351 |
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| Preterm birth leads to hyper-reactive cognitive control processing and poor white matter organization in adulthood. |
Olsen, Alexander; Dennis, Emily L; Evensen, Kari Anne I; Husby Hollund, Ingrid Marie; Løhaugen, Gro C C; Thompson, Paul M; Brubakk, Ann-Mari; Eikenes, Live; Håberg, Asta K |
NeuroImage. |
29191480 |
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| Methylation of OPRL1 mediates the effect of psychosocial stress on binge drinking in adolescents. |
Ruggeri, Barbara; Macare, Christine; Stopponi, Serena; Jia, Tianye; Carvalho, Fabiana M; Robert, Gabriel; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Sommer, Wolfgang H; Bakalkin, Georgy; Ciccocioppo, Roberto; Schumann, Gunter; IMAGEN consortium |
Journal of child psychology and psychiatry, and allied disciplines. |
29197086 |
2017 Dec 02; |
| The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations. |
Keenan, Alexandra B; Jenkins, Sherry L; Jagodnik, Kathleen M; Koplev, Simon; He, Edward; Torre, Denis; Wang, Zichen; Dohlman, Anders B; Silverstein, Moshe C; Lachmann, Alexander; Kuleshov, Maxim V; Ma'ayan, Avi; Stathias, Vasileios; Terryn, Raymond; Cooper, Daniel; Forlin, Michele; Koleti, Amar; Vidovic, Dusica; Chung, Caty; Schürer, Stephan C; Vasiliauskas, Jouzas; Pilarczyk, Marcin; Shamsaei, Behrouz; Fazel, Mehdi; Ren, Yan; Niu, Wen; Clark, Nicholas A; White, Shana; Mahi, Naim; Zhang, Lixia; Kouril, Michal; Reichard, John F; Sivaganesan, Siva; Medvedovic, Mario; Meller, Jaroslaw; Koch, Rick J; Birtwistle, Marc R; Iyengar, Ravi; Sobie, Eric A; Azeloglu, Evren U; Kaye, Julia; Osterloh, Jeannette; Haston, Kelly; Kalra, Jaslin; Finkbiener, Steve; Li, Jonathan; Milani, Pamela; Adam, Miriam; Escalante-Chong, Renan; Sachs, Karen; Lenail, Alex; Ramamoorthy, Divya; Fraenkel, Ernest; Daigle, Gavin; Hussain, Uzma; Coye, Alyssa; Rothstein, Jeffrey; Sareen, Dhruv; Ornelas, Loren; Banuelos, Maria; Mandefro, Berhan; Ho, Ritchie; Svendsen, Clive N; Lim, Ryan G; Stocksdale, Jennifer; Casale, Malcolm S; Thompson, Terri G; Wu, Jie; Thompson, Leslie M; Dardov, Victoria; Venkatraman, Vidya; Matlock, Andrea; Van Eyk, Jennifer E; Jaffe, Jacob D; Papanastasiou, Malvina; Subramanian, Aravind; Golub, Todd R; Erickson, Sean D; Fallahi-Sichani, Mohammad; Hafner, Marc; Gray, Nathanael S; Lin, Jia-Ren; Mills, Caitlin E; Muhlich, Jeremy L; Niepel, Mario; Shamu, Caroline E; Williams, Elizabeth H; Wrobel, David; Sorger, Peter K; Heiser, Laura M; Gray, Joe W; Korkola, James E; Mills, Gordon B; LaBarge, Mark; Feiler, Heidi S; Dane, Mark A; Bucher, Elmar; Nederlof, Michel; Sudar, Damir; Gross, Sean; Kilburn, David F; Smith, Rebecca; Devlin, Kaylyn; Margolis, Ron; Derr, Leslie; Lee, Albert; Pillai, Ajay |
Cell systems. |
29199020 |
2017 Nov 24; |
| MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS. |
Dennis, Emily L; Rashid, Faisal; Faskowitz, Josh; Jin, Yan; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Hickie, Ian B; Wright, Margaret J; Jahanshad, Neda; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201279 |
2017; |
| A NETWORK APPROACH TO EXAMINING INJURY SEVERITY IN PEDIATRIC TBI. |
Dennis, Emily L; Rashid, Faisal; Jahanshad, Neda; Babikian, Talin; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Asarnow, Robert F; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201280 |
2017; |
| Graph theoretical approaches towards understanding differences in frontoparietal and default mode networks in Autism. |
Riedel, Brandalyn C; Jahanshad, Neda; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201281 |
2017; |
| THE IMPACT OF MATCHING FUNCTIONAL ON ATROPHY MEASUREMENT FROM GEODESIC SHOOTING IN DIFFEOMORPHISMS. |
Fleishman, Greg M; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201282 |
2017; |
| A COMPARISON OF NETWORK DEFINITIONS FOR DETECTING SEX DIFFERENCES IN BRAIN CONNECTIVITY USING SUPPORT VECTOR MACHINES. |
Hafzalla, George W; Ragothaman, Anjanibhargavi; Faskowitz, Joshua; Jahanshad, Neda; McMahon, Katie L; de Zubicaray, Greig I; Wright, Margaret J; Braskie, Meredith N; Prasad, Gautam; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201283 |
2017; |
| APPROXIMATING PRINCIPAL GENETIC COMPONENTS OF SUBCORTICAL SHAPE. |
Gutman, Boris A; Pizzagalli, Fabrizio; Jahanshad, Neda; Wright, Margaret J; McMahon, Katie L; de Zubicaray, Greig; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
29201284 |
2017; |
| Estimating bounds on causal effects in high-dimensional and possibly confounded systems. |
Malinsky, Daniel; Spirtes, Peter |
International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. |
29203954 |
2017 Sep; |
| Pharmacoepidemiology in the era of real-world evidence. |
Toh, Sengwee |
Current epidemiology reports. |
29204331 |
2017 Dec; |
| Estimating Effects of Dynamic Treatment Strategies in Pharmacoepidemiologic Studies with Time-varying Confounding: A Primer. |
Li, Xiaojuan; Young, Jessica G; Toh, Sengwee |
Current epidemiology reports. |
29204332 |
2017 Dec; |
| Development and application of two semi-automated tools for targeted medical product surveillance in a distributed data network. |
Connolly, John G; Wang, Shirley V; Fuller, Candace C; Toh, Sengwee; Panozzo, Catherine A; Cocoros, Noelle; Zhou, Meijia; Gagne, Joshua J; Maro, Judith C |
Current epidemiology reports. |
29204333 |
2017 Dec; |
| Reproducibility, sharing and progress in nanomaterial databases. |
Tropsha, Alexander; Mills, Karmann C; Hickey, Anthony J |
Nature nanotechnology |
29209007 |
2017 12 06 |
| KAT2A coupled with the ?-KGDH complex acts as a histone H3 succinyltransferase. |
Wang, Yugang; Guo, Yusong R; Liu, Ke; Yin, Zheng; Liu, Rui; Xia, Yan; Tan, Lin; Yang, Peiying; Lee, Jong-Ho; Li, Xin-Jian; Hawke, David; Zheng, Yanhua; Qian, Xu; Lyu, Jianxin; He, Jie; Xing, Dongming; Tao, Yizhi Jane; Lu, Zhimin |
Nature. |
29211711 |
2017 12 14; |
| Smaller Hippocampal Volume in Posttraumatic Stress Disorder: A Multisite ENIGMA-PGC Study: Subcortical Volumetry Results From Posttraumatic Stress Disorder Consortia. |
Logue, Mark W; van Rooij, Sanne J H; Dennis, Emily L; Davis, Sarah L; Hayes, Jasmeet P; Stevens, Jennifer S; Densmore, Maria; Haswell, Courtney C; Ipser, Jonathan; Koch, Saskia B J; Korgaonkar, Mayuresh; Lebois, Lauren A M; Peverill, Matthew; Baker, Justin T; Boedhoe, Premika S W; Frijling, Jessie L; Gruber, Staci A; Harpaz-Rotem, Ilan; Jahanshad, Neda; Koopowitz, Sheri; Levy, Ifat; Nawijn, Laura; O'Connor, Lauren; Olff, Miranda; Salat, David H; Sheridan, Margaret A; Spielberg, Jeffrey M; van Zuiden, Mirjam; Winternitz, Sherry R; Wolff, Jonathan D; Wolf, Erika J; Wang, Xin; Wrocklage, Kristen; Abdallah, Chadi G; Bryant, Richard A; Geuze, Elbert; Jovanovic, Tanja; Kaufman, Milissa L; King, Anthony P; Krystal, John H; Lagopoulos, Jim; Bennett, Maxwell; Lanius, Ruth; Liberzon, Israel; McGlinchey, Regina E; McLaughlin, Katie A; Milberg, William P; Miller, Mark W; Ressler, Kerry J; Veltman, Dick J; Stein, Dan J; Thomaes, Kathleen; Thompson, Paul M; Morey, Rajendra A |
Biological psychiatry. |
29217296 |
2018 Feb 01; |
| Large-scale analysis of disease pathways in the human interactome. |
Agrawal, Monica; Zitnik, Marinka; Leskovec, Jure |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
29218874 |
2018; |
| Democratizing data science through data science training. |
Van Horn, John Darrell; Fierro, Lily; Kamdar, Jeana; Gordon, Jonathan; Stewart, Crystal; Bhattrai, Avnish; Abe, Sumiko; Lei, Xiaoxiao; O'Driscoll, Caroline; Sinha, Aakanchha; Jain, Priyambada; Burns, Gully; Lerman, Kristina; Ambite, José Luis |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
29218890 |
2018; |
| Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline. |
Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
29218892 |
2018; |
| VisAGE: Integrating external knowledge into electronic medical record visualization. |
Huang, Edward W; Wang, Sheng; Zhai, ChengXiang |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
29218916 |
2018; |
| Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure. |
P Tafti, Ahmad; Badger, Jonathan; LaRose, Eric; Shirzadi, Ehsan; Mahnke, Andrea; Mayer, John; Ye, Zhan; Page, David; Peissig, Peggy |
JMIR medical informatics. |
29222076 |
2017 Dec 08; |
| Action Centered Contextual Bandits. |
Greenewald, Kristjan; Tewari, Ambuj; Klasnja, Predrag; Murphy, Susan |
Advances in neural information processing systems. |
29225449 |
2017 Dec; |
| An Optimal Transportation based Univariate Neuroimaging Index. |
Mi, Liang; Zhang, Wen; Zhang, Junwei; Fan, Yonghui; Goradia, Dhruman; Chen, Kewei; Reiman, Eric M; Gu, Xianfeng; Wang, Yalin |
Proceedings. IEEE International Conference on Computer Vision. |
29225556 |
2017; |
| Finding Pure Sub-Models for Improved Differentiation of Bi-Factor and Second-Order Models. |
Yang, Renjie; Spirtes, Peter; Scheines, Richard; Reise, Steven P; Mansoff, Maxwell |
Structural equation modeling : a multidisciplinary journal. |
29230085 |
2017; |
| Embedding Learning with Events in Heterogeneous Information Networks. |
Gui, Huan; Liu, Jialu; Tao, Fangbo; Jiang, Meng; Norick, Brandon; Kaplan, Lance; Han, Jiawei |
IEEE transactions on knowledge and data engineering. |
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2017 Nov; |
| Data-Driven Mammography Screening Practices-Reply. |
Lee, Cindy S; Sickles, Edward A; Burnside, Elizabeth S |
JAMA oncology. |
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2017 Dec 14; |
| Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research. |
Erdemir, Ahmet; Hunter, Peter J; Holzapfel, Gerhard A; Loew, Leslie M; Middleton, John; Jacobs, Christopher R; Nithiarasu, Perumal; Löhner, Rainlad; Wei, Guowei; Winkelstein, Beth A; Barocas, Victor H; Guilak, Farshid; Ku, Joy P; Hicks, Jennifer L; Delp, Scott L; Sacks, Michael; Weiss, Jeffrey A; Ateshian, Gerard A; Maas, Steve A; McCulloch, Andrew D; Peng, Grace C Y |
Journal of biomechanical engineering. |
29247253 |
2018 Feb 01; |
| Understanding cardiac extracellular matrix remodeling to develop biomarkers of myocardial infarction outcomes. |
Nielsen, Signe Holm; Mouton, Alan J; DeLeon-Pennell, Kristine Y; Genovese, Federica; Karsdal, Morten; Lindsey, Merry L |
Matrix biology : journal of the International Society for Matrix Biology. |
29247693 |
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| Complete hazard ranking to analyze right-censored data: An ALS survival study. |
Huang, Zhengnan; Zhang, Hongjiu; Boss, Jonathan; Goutman, Stephen A; Mukherjee, Bhramar; Dinov, Ivo D; Guan, Yuanfang; Pooled Resource Open-Access ALS Clinical Trials Consortium |
PLoS computational biology. |
29253881 |
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| Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. |
Glusman, Gustavo; Rose, Peter W; Prli?, Andreas; Dougherty, Jennifer; Duarte, José M; Hoffman, Andrew S; Barton, Geoffrey J; Bendixen, Emøke; Bergquist, Timothy; Bock, Christian; Brunk, Elizabeth; Buljan, Marija; Burley, Stephen K; Cai, Binghuang; Carter, Hannah; Gao, JianJiong; Godzik, Adam; Heuer, Michael; Hicks, Michael; Hrabe, Thomas; Karchin, Rachel; Leman, Julia Koehler; Lane, Lydie; Masica, David L; Mooney, Sean D; Moult, John; Omenn, Gilbert S; Pearl, Frances; Pejaver, Vikas; Reynolds, Sheila M; Rokem, Ariel; Schwede, Torsten; Song, Sicheng; Tilgner, Hagen; Valasatava, Yana; Zhang, Yang; Deutsch, Eric W |
Genome medicine. |
29254494 |
2017 Dec 18; |
| Deep Learning based Classification of FDG-PET Data for Alzheimers Disease Categories. |
Singh, Shibani; Srivastava, Anant; Mi, Liang; Caselli, Richard J; Chen, Kewei; Goradia, Dhruman; Reiman, Eric M; Wang, Yalin |
Proceedings of SPIE--the International Society for Optical Engineering. |
29263566 |
2017 Oct; |
| A community effort to protect genomic data sharing, collaboration and outsourcing. |
Wang, Shuang; Jiang, Xiaoqian; Tang, Haixu; Wang, Xiaofeng; Bu, Diyue; Carey, Knox; Dyke, Stephanie Om; Fox, Dov; Jiang, Chao; Lauter, Kristin; Malin, Bradley; Sofia, Heidi; Telenti, Amalio; Wang, Lei; Wang, Wenhao; Ohno-Machado, Lucila |
NPJ genomic medicine. |
29263842 |
2017; |
| Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. |
Gutiérrez-Sacristán, Alba; Guedj, Romain; Korodi, Gabor; Stedman, Jason; Furlong, Laura I; Patel, Chirag J; Kohane, Isaac S; Avillach, Paul |
Bioinformatics (Oxford, England). |
29267850 |
2017 Dec 18; |
| SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis. |
Magis, Andrew T; Funk, Cory C; Price, Nathan D |
IEEE life sciences letters. |
29270443 |
2015 Aug; |
| MinION-based long-read sequencing and assembly extends theCaenorhabditis elegansreference genome. |
Tyson, John R; O'Neil, Nigel J; Jain, Miten; Olsen, Hugh E; Hieter, Philip; Snutch, Terrance P |
Genome research. |
29273626 |
2018 Feb; |
| Neural circuitry underlying sustained attention in healthy adolescents and in ADHD symptomatology. |
O'Halloran, Laura; Cao, Zhipeng; Ruddy, Kathy; Jollans, Lee; Albaugh, Matthew D; Aleni, Andrea; Potter, Alexandra S; Vahey, Nigel; Banaschewski, Tobias; Hohmann, Sarah; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Garavan, Hugh; Kelly, Clare; Whelan, Robert |
NeuroImage. |
29274748 |
2018 04 01; |
| Center of Excellence for Mobile Sensor Data-to-Knowledge (MD2K). |
Kumar, Santosh; Abowd, Gregory; Abraham, William T; al'Absi, Mustafa; Chau, Duen Horng Polo; Ertin, Emre; Estrin, Deborah; Ganesan, Deepak; Hnat, Timothy; Hossain, Syed Monowar; Ives, Zachary; Kerr, Jacqueline; Marlin, Benjamin M; Murphy, Susan; Rehg, James M; Nahum-Shani, Inbal; Shetty, Vivek; Sim, Ida; Spring, Bonnie; Srivastava, Mani; Wetter, Dave |
IEEE pervasive computing. |
29276451 |
2017 Apr-Jun; |
| Neural response to working memory demand predicts neurocognitive deficits in HIV. |
Cohen, Ronald A; Siegel, S; Gullett, J M; Porges, E; Woods, A J; Huang, H; Zhu, Y; Tashima, K; Ding, M-Z |
Journal of neurovirology. |
29280107 |
2018 Jun; |
| Proteomic analysis of the cardiac extracellular matrix: clinical research applications. |
Lindsey, Merry L; Jung, Mira; Hall, Michael E; DeLeon-Pennell, Kristine Y |
Expert review of proteomics. |
29285949 |
2018 Feb; |
| Investigating the differential contributions of sex and brain size to gray matter asymmetry. |
Kurth, Florian; Thompson, Paul M; Luders, Eileen |
Cortex; a journal devoted to the study of the nervous system and behavior. |
29287244 |
2018 Feb; |
| Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. |
Amith, Muhammad; Manion, Frank J; Harris, Marcelline R; Zhang, Yaoyun; Xu, Hua; Tao, Cui |
Studies in health technology and informatics. |
29295217 |
2017; |
| Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications. |
Hong, Na; Prodduturi, Naresh; Wang, Chen; Jiang, Guoqian |
Studies in health technology and informatics. |
29295223 |
2017; |
| A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR. |
Jiang, Guoqian; Kiefer, Richard C; Sharma, Deepak K; Prud'hommeaux, Eric; Solbrig, Harold R |
Studies in health technology and informatics. |
29295227 |
2017; |
| Building Interoperable FHIR-Based Vocabulary Mapping Services: A Case Study of OHDSI Vocabularies and Mappings. |
Jiang, Guoqian; Kiefer, Richard; Prud'hommeaux, Eric; Solbrig, Harold R |
Studies in health technology and informatics. |
29295408 |
2017; |
| Linking temporal medical records using non-protected health information data. |
Bonomi, Luca; Jiang, Xiaoqian |
Statistical methods in medical research. |
29298592 |
2017 Jan 01; |
| Chemotext: A Publicly Available Web Server for Mining Drug-Target-Disease Relationships in PubMed. |
Capuzzi, Stephen J; Thornton, Thomas E; Liu, Kammy; Baker, Nancy; Lam, Wai In; O'Banion, Colin P; Muratov, Eugene N; Pozefsky, Diane; Tropsha, Alexander |
Journal of chemical information and modeling. |
29300482 |
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| Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function. |
Sallam, Tamer; Sandhu, Jaspreet; Tontonoz, Peter |
Circulation research. |
29301847 |
2018 Jan 05; |
| Hypothesis Testing in Unsupervised Domain Adaptation with Applications in Alzheimer's Disease. |
Zhou, Hao Henry; Ravi, Sathya N; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas |
Advances in neural information processing systems. |
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| Interactive Exploration on Large Genomic Datasets. |
Tu, Eric |
EECS technical report series. |
29308454 |
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| Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide. |
Marshall, Iain J; Noel-Storr, Anna; Kuiper, Joël; Thomas, James; Wallace, Byron C |
Research synthesis methods. |
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| Gut microbiome populations are associated with structure-specific changes in white matter architecture. |
Ong, Irene M; Gonzalez, Jose G; McIlwain, Sean J; Sawin, Emily A; Schoen, Andrew J; Adluru, Nagesh; Alexander, Andrew L; Yu, John-Paul J |
Translational psychiatry. |
29317592 |
2018 Jan 10; |
| Integrated omics dissection of proteome dynamics during cardiac remodeling. |
Lau, Edward; Cao, Quan; Lam, Maggie P Y; Wang, Jie; Ng, Dominic C M; Bleakley, Brian J; Lee, Jessica M; Liem, David A; Wang, Ding; Hermjakob, Henning; Ping, Peipei |
Nature communications. |
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| A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth. |
Rappoport, Nadav; Toung, Jonathan; Hadley, Dexter; Wong, Ronald J; Fujioka, Kazumichi; Reuter, Jason; Abbott, Charles W; Oh, Sam; Hu, Donglei; Eng, Celeste; Huntsman, Scott; Bodian, Dale L; Niederhuber, John E; Hong, Xiumei; Zhang, Ge; Sikora-Wohfeld, Weronika; Gignoux, Christopher R; Wang, Hui; Oehlert, John; Jelliffe-Pawlowski, Laura L; Gould, Jeffrey B; Darmstadt, Gary L; Wang, Xiaobin; Bustamante, Carlos D; Snyder, Michael P; Ziv, Elad; Patsopoulos, Nikolaos A; Muglia, Louis J; Burchard, Esteban; Shaw, Gary M; O'Brodovich, Hugh M; Stevenson, David K; Butte, Atul J; Sirota, Marina |
Scientific reports. |
29317701 |
2018 01 09; |
| Standardized Effect Sizes for Preventive Mobile Health Interventions in Micro-randomized Trials. |
Luers, Brook; Klasnja, Predrag; Murphy, Susan |
Prevention science : the official journal of the Society for Prevention Research. |
29318443 |
2018 Jan 09; |
| Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups. |
Moon, Clara; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W |
Proteomics. |
29319931 |
2018 Feb; |
| A bibliometric review of drug repurposing. |
Baker, Nancy C; Ekins, Sean; Williams, Antony J; Tropsha, Alexander |
Drug discovery today. |
29330123 |
2018 Mar; |
| Learning Tree-Structured Detection Cascades for Heterogeneous Networks of Embedded Devices. |
Dadkhahi, Hamid; Marlin, Benjamin M |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29333328 |
2017 Aug; |
| Robust Dynamic Risk Prediction with Longitudinal Studies. |
Zhou, Qian M; Dai, Wei; Zheng, Yingye; Cai, Tianxi |
Statistical theory and related fields. |
29335682 |
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| MIRO: guidelines for minimum information for the reporting of an ontology. |
Matentzoglu, Nicolas; Malone, James; Mungall, Chris; Stevens, Robert |
Journal of biomedical semantics. |
29347969 |
2018 Jan 18; |
| Guidelines for experimental models of myocardial ischemia and infarction. |
Lindsey, Merry L; Bolli, Roberto; Canty Jr, John M; Du, Xiao-Jun; Frangogiannis, Nikolaos G; Frantz, Stefan; Gourdie, Robert G; Holmes, Jeffrey W; Jones, Steven P; Kloner, Robert A; Lefer, David J; Liao, Ronglih; Murphy, Elizabeth; Ping, Peipei; Przyklenk |
American journal of physiology. Heart and circulatory physiology. |
29351451 |
2018 Apr 01; |
| Guidelines for measuring cardiac physiology in mice. |
Lindsey, Merry L; Kassiri, Zamaneh; Virag, Jitka A I; de Castro Brás, Lisandra E; Scherrer-Crosbie, Marielle |
American journal of physiology. Heart and circulatory physiology. |
29351456 |
2018 Apr 01; |
| Guidelines for authors and reviewers on antibody use in physiology studies. |
Brooks, Heddwen L; Lindsey, Merry L |
American journal of physiology. Heart and circulatory physiology. |
29351459 |
2018 Apr 01; |
| Are minor alleles more likely to be risk alleles? |
Kido, Takashi; Sikora-Wohlfeld, Weronika; Kawashima, Minae; Kikuchi, Shinichi; Kamatani, Naoyuki; Patwardhan, Anil; Chen, Richard; Sirota, Marina; Kodama, Keiichi; Hadley, Dexter; Butte, Atul J |
BMC medical genomics. |
29351777 |
2018 01 19; |
| Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer-associated genetic variant rs4415084. |
Zhang, Yi; Manjunath, Mohith; Zhang, Shilu; Chasman, Deborah; Roy, Sushmita; Song, Jun S |
Cancer research. |
29351903 |
2018 Jan 19; |
| Community Identity and User Engagement in a Multi-Community Landscape. |
Zhang, Justine; Hamilton, William L; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, Jure |
Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media. |
29354325 |
2017 May; |
| Loyalty in Online Communities. |
Hamilton, William L; Zhang, Justine; Danescu-Niculescu-Mizil, Cristian; Jurafsky, Dan; Leskovec, Jure |
Proceedings of the ... International AAAI Conference on Weblogs and Social Media. International AAAI Conference on Weblogs and Social Media. |
29354326 |
2017 May; |
| Lingual Gyrus Surface Area Is Associated with Anxiety-Depression Severity in Young Adults: A Genetic Clustering Approach. |
Couvy-Duchesne, Baptiste; Strike, Lachlan T; de Zubicaray, Greig I; McMahon, Katie L; Thompson, Paul M; Hickie, Ian B; Martin, Nicholas G; Wright, Margaret J |
eNeuro. |
29354681 |
2018 Jan-Feb; |
| ShapeShop: Towards Understanding Deep Learning Representations via Interactive Experimentation. |
Hohman, Fred; Hodas, Nathan; Chau, Duen Horng |
Extended abstracts on Human factors in computing systems. CHI Conference. |
29354810 |
2017 May; |
| mHealth Visual Discovery Dashboard. |
Fang, Dezhi; Hohman, Fred; Polack, Peter; Sarker, Hillol; Kahng, Minsuk; Sharmin, Moushumi; al'Absi, Mustafa; Chau, Duen Horng |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29354812 |
2017 Sep; |
| Co-activation patterns in resting-state fMRI signals. |
Liu, Xiao; Zhang, Nanyin; Chang, Catie; Duyn, Jeff H |
NeuroImage. |
29355767 |
2018 10 15; |
| e wrapper: Operationalizing engagement strategies in mHealth. |
Wagner 3rd, Blake; Liu, Elaine; Shaw, Steven D; Iakovlev, Gleb; Zhou, Linlu; Harrington, Christina; Abowd, Gregory; Yoon, Carolyn; Kumar, Santosh; Murphy, Susan; Spring, Bonnie; Nahum-Shani, Inbal |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29362728 |
2017 Sep; |
| Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study. |
Whelan, Christopher D; Altmann, Andre; Botía, Juan A; Jahanshad, Neda; Hibar, Derrek P; Absil, Julie; Alhusaini, Saud; Alvim, Marina K M; Auvinen, Pia; Bartolini, Emanuele; Bergo, Felipe P G; Bernardes, Tauana; Blackmon, Karen; Braga, Barbara; Caligiuri, Maria Eugenia; Calvo, Anna; Carr, Sarah J; Chen, Jian; Chen, Shuai; Cherubini, Andrea; David, Philippe; Domin, Martin; Foley, Sonya; França, Wendy; Haaker, Gerrit; Isaev, Dmitry; Keller, Simon S; Kotikalapudi, Raviteja; Kowalczyk, Magdalena A; Kuzniecky, Ruben; Langner, Soenke; Lenge, Matteo; Leyden, Kelly M; Liu, Min; Loi, Richard Q; Martin, Pascal; Mascalchi, Mario; Morita, Marcia E; Pariente, Jose C; Rodríguez-Cruces, Raul; Rummel, Christian; Saavalainen, Taavi; Semmelroch, Mira K; Severino, Mariasavina; Thomas, Rhys H; Tondelli, Manuela; Tortora, Domenico; Vaudano, Anna Elisabetta; Vivash, Lucy; von Podewils, Felix; Wagner, Jan; Weber, Bernd; Yao, Yi; Yasuda, Clarissa L; Zhang, Guohao; Bargalló, Nuria; Bender, Benjamin; Bernasconi, Neda; Bernasconi, Andrea; Bernhardt, Boris C; Blümcke, Ingmar; Carlson, Chad; Cavalleri, Gianpiero L; Cendes, Fernando; Concha, Luis; Delanty, Norman; Depondt, Chantal; Devinsky, Orrin; Doherty, Colin P; Focke, Niels K; Gambardella, Antonio; Guerrini, Renzo; Hamandi, Khalid; Jackson, Graeme D; Kälviäinen, Reetta; Kochunov, Peter; Kwan, Patrick; Labate, Angelo; McDonald, Carrie R; Meletti, Stefano; O'Brien, Terence J; Ourselin, Sebastien; Richardson, Mark P; Striano, Pasquale; Thesen, Thomas; Wiest, Roland; Zhang, Junsong; Vezzani, Annamaria; Ryten, Mina; Thompson, Paul M; Sisodiya, Sanjay M |
Brain : a journal of neurology. |
29365066 |
2018 Feb 01; |
| Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 2: From Clinical Implementation to Enterprise. |
Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, Rasu |
Journal of the American College of Radiology : JACR. |
29366598 |
2018 03; |
| Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 1: From Methodology to Clinical Implementation. |
Shaikh, Faiq; Franc, Benjamin; Allen, Erastus; Sala, Evis; Awan, Omer; Hendrata, Kenneth; Halabi, Safwan; Mohiuddin, Sohaib; Malik, Sana; Hadley, Dexter; Shrestha, Rasu |
Journal of the American College of Radiology : JACR. |
29366600 |
2018 03; |
| Learning to Compose Domain-Specific Transformations for Data Augmentation. |
Ratner, Alexander J; Ehrenberg, Henry R; Hussain, Zeshan; Dunnmon, Jared; Ré, Christopher |
Advances in neural information processing systems. |
29375240 |
2017 Dec; |
| Using Collaborative Simulation Modeling to Develop a Web-Based Tool to Support Policy-Level Decision Making About Breast Cancer Screening Initiation Age. |
Burnside, Elizabeth S; Lee, Sandra J; Bennette, Carrie; Near, Aimee M; Alagoz, Oguzhan; Huang, Hui; van den Broek, Jeroen J; Kim, Joo Yeon; Ergun, Mehmet A; van Ravesteyn, Nicolien T; Stout, Natasha K; de Koning, Harry J; Mandelblatt, Jeanne S |
MDM policy & practice. |
29376135 |
2017 Jul; |
| Cognitive genomics: Searching for the genetic roots of neuropsychological functioning. |
Bearden, Carrie E; Glahn, David C |
Neuropsychology. |
29376674 |
2017 Nov; |
| Cortical Abnormalities Associated With Pediatric and Adult Obsessive-Compulsive Disorder: Findings From the ENIGMA Obsessive-Compulsive Disorder Working Group. |
Boedhoe, Premika S W; Schmaal, Lianne; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anticevic, Alan; Arnold, Paul D; Batistuzzo, Marcelo C; Benedetti, Francesco; Beucke, Jan C; Bollettini, Irene; Bose, Anushree; Brem, Silvia; Calvo, Anna; Calvo, Rosa |
The American journal of psychiatry. |
29377733 |
2018 05 01; |
| Reactome graph database: Efficient access to complex pathway data. |
Fabregat, Antonio; Korninger, Florian; Viteri, Guilherme; Sidiropoulos, Konstantinos; Marin-Garcia, Pablo; Ping, Peipei; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
PLoS computational biology. |
29377902 |
2018 01; |
| Hippo Cascade Controls Lineage Commitment of Liver Tumors in Mice and Humans. |
Zhang, Shanshan; Wang, Jingxiao; Wang, Haichuan; Fan, Lingling; Fan, Biao; Zeng, Billy; Tao, Junyan; Li, Xiaolei; Che, Li; Cigliano, Antonio; Ribback, Silvia; Dombrowski, Frank; Chen, Bin; Cong, Wenming; Wei, Lixin; Calvisi, Diego F; Chen, Xin |
The American journal of pathology. |
29378174 |
2018 04; |
| Interleukins and their signaling pathways in the Reactome biological pathway database. |
Jupe, Steve; Ray, Keith; Roca, Corina Duenas; Varusai, Thawfeek; Shamovsky, Veronica; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
The Journal of allergy and clinical immunology. |
29378288 |
2018 Apr; |
| Germline contamination and leakage in whole genome somatic single nucleotide variant detection. |
Sendorek, Dorota H; Caloian, Cristian; Ellrott, Kyle; Bare, J Christopher; Yamaguchi, Takafumi N; Ewing, Adam D; Houlahan, Kathleen E; Norman, Thea C; Margolin, Adam A; Stuart, Joshua M; Boutros, Paul C |
BMC bioinformatics |
29385983 |
2018 01 31 |
| The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. |
Menschaert, Gerben; Wang, Xiaojing; Jones, Andrew R; Ghali, Fawaz; Fenyö, David; Olexiouk, Volodimir; Zhang, Bing; Deutsch, Eric W; Ternent, Tobias; Vizcaíno, Juan Antonio |
Genome biology. |
29386051 |
2018 01 31; |
| Statistical tests and identifiability conditions for pooling and analyzing multisite datasets. |
Zhou, Hao Henry; Singh, Vikas; Johnson, Sterling C; Wahba, Grace; Alzheimer?s Disease Neuroimaging Initiative |
Proceedings of the National Academy of Sciences of the United States of America. |
29386387 |
2018 Feb 13; |
| Two-Sample Tests for High-Dimensional Linear Regression with an Application to Detecting Interactions. |
Xia, Yin; Cai, Tianxi; Cai, T Tony |
Statistica Sinica. |
29386856 |
2018 Jan; |
| Benefits of and Barriers to Pharmacogenomics-Guided Treatment for Major Depressive Disorder. |
Ahmed, Ahmed T; Weinshilboum, Richard; Frye, Mark A |
Clinical pharmacology and therapeutics. |
29388201 |
2018 May; |
| Inferring Generative Model Structure with Static Analysis. |
Varma, Paroma; He, Bryan; Bajaj, Payal; Banerjee, Imon; Khandwala, Nishith; Rubin, Daniel L; Ré, Christopher |
Advances in neural information processing systems. |
29391769 |
2017 Dec; |
| Understanding and Optimizing Asynchronous Low-Precision Stochastic Gradient Descent. |
De Sa, Christopher; Feldman, Matthew; Ré, Christopher; Olukotun, Kunle |
Proceedings. International Symposium on Computer Architecture. |
29391770 |
2017 Jun; |
| Gaussian Quadrature for Kernel Features. |
Dao, Tri; De Sa, Christopher; Ré, Christopher |
Advances in neural information processing systems. |
29398882 |
2017 Dec; |
| Anyone Can Become a Troll: Causes of Trolling Behavior in Online Discussions. |
Cheng, Justin; Bernstein, Michael; Danescu-Niculescu-Mizil, Cristian; Leskovec, Jure |
CSCW : proceedings of the Conference on Computer-Supported Cooperative Work. Conference on Computer-Supported Cooperative Work. |
29399664 |
2017 Feb-Mar; |
| The Influence of Study-Level Inference Models and Study Set Size on Coordinate-Based fMRI Meta-Analyses. |
Bossier, Han; Seurinck, Ruth; Kühn, Simone; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Martinot, Jean-Luc; Lemaitre, Herve; Paus, Tomá?; Millenet, Sabina; Moerkerke, Beatrijs |
Frontiers in neuroscience. |
29403344 |
2017; |
| Neuroanatomical morphometric characterization of sex differences in youth using statistical learning. |
Sepehrband, Farshid; Lynch, Kirsten M; Cabeen, Ryan P; Gonzalez-Zacarias, Clio; Zhao, Lu; D'Arcy, Mike; Kesselman, Carl; Herting, Megan M; Dinov, Ivo D; Toga, Arthur W; Clark, Kristi A |
NeuroImage. |
29414494 |
2018 May 15; |
| The Incremental Multiresolution Matrix Factorization Algorithm. |
Ithapu, Vamsi K; Kondor, Risi; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
29416293 |
2017 Jul; |
| Online Graph Completion: Multivariate Signal Recovery in Computer Vision. |
Kim, Won Hwa; Jalal, Mona; Hwang, Seongjae; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
29416294 |
2017 Jul; |
| iLid: Low-power Sensing of Fatigue and Drowsiness Measures on a Computational Eyeglass. |
Rostaminia, Soha; Mayberry, Addison; Ganesan, Deepak; Marlin, Benjamin; Gummeson, Jeremy |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. |
29417956 |
2017 Jun; |
| Integrated Theory- and Data-driven Feature Selection in Gene Expression Data Analysis. |
Raghu, Vineet K; Ge, Xiaoyu; Chrysanthis, Panos K; Benos, Panayiotis V |
Proceedings. International Conference on Data Engineering. |
29422764 |
2017 Apr; |
| Systematic identification of correlates of HIV infection: an X-wide association study. |
Patel, Chirag J; Bhattacharya, Jay; Ioannidis, John P A; Bendavid, Eran |
AIDS (London, England). |
29424772 |
2018 04 24; |
| Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging. |
Kim, Hyunwoo J; Adluru, Nagesh; Suri, Heemanshu; Vemuri, Baba C; Johnson, Sterling C; Singh, Vikas |
Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. |
29430166 |
2017 Jul; |
| Nanopore sequencing and assembly of a human genome with ultra-long reads. |
Jain, Miten; Koren, Sergey; Miga, Karen H; Quick, Josh; Rand, Arthur C; Sasani, Thomas A; Tyson, John R; Beggs, Andrew D; Dilthey, Alexander T; Fiddes, Ian T; Malla, Sunir; Marriott, Hannah; Nieto, Tom; O'Grady, Justin; Olsen, Hugh E; Pedersen, Brent S; Rhie, Arang; Richardson, Hollian; Quinlan, Aaron R; Snutch, Terrance P; Tee, Louise; Paten, Benedict; Phillippy, Adam M; Simpson, Jared T; Loman, Nicholas J; Loose, Matthew |
Nature biotechnology. |
29431738 |
2018 Jan 29; |
| Quantitative high-throughput phenotypic screening of pediatric cancer cell lines identifies multiple opportunities for drug repurposing. |
Shen, Min; Asawa, Rosita; Zhang, Ya-Qin; Cunningham, Elizabeth; Sun, Hongmao; Tropsha, Alexander; Janzen, William P; Muratov, Eugene N; Capuzzi, Stephen J; Farag, Sherif; Jadhav, Ajit; Blatt, Julie; Simeonov, Anton; Martinez, Natalia J |
Oncotarget. |
29435139 |
2018 Jan 12; |
| A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations. |
Toor, Jugmohit S; Rao, Arjun A; McShan, Andrew C; Yarmarkovich, Mark; Nerli, Santrupti; Yamaguchi, Karissa; Madejska, Ada A; Nguyen, Son; Tripathi, Sarvind; Maris, John M; Salama, Sofie R; Haussler, David; Sgourakis, Nikolaos G |
Frontiers in immunology. |
29441070 |
2018; |
| Learning Activity Predictors from Sensor Data: Algorithms, Evaluation, and Applications. |
Minor, Bryan; Doppa, Janardhan Rao; Cook, Diane J |
IEEE transactions on knowledge and data engineering. |
29456436 |
2017 Dec 01; |
| Superbubbles, Ultrabubbles, and Cacti. |
Paten, Benedict; Eizenga, Jordan M; Rosen, Yohei M; Novak, Adam M; Garrison, Erik; Hickey, Glenn |
Journal of computational biology : a journal of computational molecular cell biology. |
29461862 |
2018 Feb 20; |
| Assessing the Practice of Biomedical Ontology Evaluation: Gaps and Opportunities. |
Amith, Muhammad F; He, Zhe; Bian, Jiang; Antonio Lossio-Ventura, Juan; Tao, Cui |
Journal of biomedical informatics. |
29462669 |
2018 Feb 17; |
| Comment. |
Reiss, Philip T; Goldsmith, Jeff |
Journal of the American Statistical Association. |
29479124 |
2017; |
| Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses. |
Torre, Denis; Krawczuk, Patrycja; Jagodnik, Kathleen M; Lachmann, Alexander; Wang, Zichen; Wang, Lily; Kuleshov, Maxim V; Ma'ayan, Avi |
Scientific data. |
29485625 |
2018 Feb 27; |
| Exploring applications of crowdsourcing to cryo-EM. |
Bruggemann, Jacob; Lander, Gabriel C; Su, Andrew I |
Journal of structural biology. |
29486249 |
2018 Jul; |
| Neuroimaging of the Injured Pediatric Brain: Methods and New Lessons. |
Dennis, Emily L; Babikian, Talin; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. |
29488436 |
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| Survival models and health sequences. |
Dempsey, Walter; McCullagh, Peter |
Lifetime data analysis. |
29502184 |
2018 Mar 03; |
| From Pressure to Path: Barometer-based Vehicle Tracking. |
Ho, Bo-Jhang; Martin, Paul; Swaminathan, Prashanth; Srivastava, Mani |
BuildSys'15 : proceedings of the 2nd ACM International Conference on Embedded Systems for Energy-Efficient Buildings : November 4-5, 2015, Seoul, South Korea. ACM Conference on Embedded Systems for Energy-Efficient Buildings (2nd : 2015.... |
29503981 |
2015 Nov; |
| SARA: A Mobile App to Engage Users in Health Data Collection. |
Rabbi, Mashfiqui; Philyaw-Kotov, Meredith; Lee, Jinseok; Mansour, Anthony; Dent, Laura; Wang, Xiaolei; Cunningham, Rebecca; Bonar, Erin; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29503985 |
2017 Sep; |
| Exploring Symmetric and Asymmetric Bimanual Eating Detection with Inertial Sensors on the Wrist. |
Thomaz, Edison; Bedri, Abdelkareem; Prioleau, Temiloluwa; Essa, Irfan; Abowd, Gregory D |
DigitalBiomarkers'17 : proceedings of the 1st Workshop on Digital Biomarkers : June 23, 2017, Niagara Falls, NY, USA. Workshop on Digital Biomarkers (1st : 2017 : Niagara Falls, N.Y.). |
29505038 |
2017 Jul; |
| Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation. |
Sadat, Md Nazmus; Jiang, Xiaoqian; Aziz, Md Momin Al; Wang, Shuang; Mohammed, Noman |
JMIR medical informatics. |
29506966 |
2018 Mar 05; |
| Some methods for heterogeneous treatment effect estimation in high dimensions. |
Powers, Scott; Qian, Junyang; Jung, Kenneth; Schuler, Alejandro; Shah, Nigam H; Hastie, Trevor; Tibshirani, Robert |
Statistics in medicine. |
29508417 |
2018 May 20; |
| Susceptibility of brain atrophy toTRIB3in Alzheimer's disease, evidence from functional prioritization in imaging genetics. |
Lorenzi, Marco; Altmann, Andre; Gutman, Boris; Wray, Selina; Arber, Charles; Hibar, Derrek P; Jahanshad, Neda; Schott, Jonathan M; Alexander, Daniel C; Thompson, Paul M; Ourselin, Sebastien; Alzheimer?s Disease Neuroimaging Initiative |
Proceedings of the National Academy of Sciences of the United States of America. |
29511103 |
2018 Mar 20; |
| RNA expression profiling in sulfamethoxazole-treated patients with a range of in vitro lymphocyte cytotoxicity phenotypes. |
Reinhart, Jennifer M; Rose, Warren; Panyard, Daniel J; Newton, Michael A; Liebenstein, Tyler K; Yee, Jeremiah; Trepanier, Lauren A |
Pharmacology research & perspectives. |
29511567 |
2018 04; |
| Chronodes: Interactive Multifocus Exploration of Event Sequences. |
Polack JR., Peter J; Chen, Shang-Tse; Kahng, Minsuk; DE Barbaro, Kaya; Basole, Rahul; Sharmin, Moushumi; Chau, Duen Horng |
ACM transactions on interactive intelligent systems. |
29515937 |
2018 Feb; |
| Discovery of Causal Models that Contain Latent Variables through Bayesian Scoring of Independence Constraints. |
Jabbari, Fattaneh; Ramsey, Joseph; Spirtes, Peter; Cooper, Gregory |
Machine learning and knowledge discovery in databases : European Conference, ECML PKDD ... : proceedings. ECML PKDD (Conference). |
29520396 |
2017 Sep; |
| A Practical Approach for Recognizing Eating Moments with Wrist-Mounted Inertial Sensing. |
Thomaz, Edison; Essa, Irfan; Abowd, Gregory D |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29520397 |
2015 Sep; |
| Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters. |
Sweeney, Timothy E; Azad, Tej D; Donato, Michele; Haynes, Winston A; Perumal, Thanneer M; Henao, Ricardo; Bermejo-Martin, Jesús F; Almansa, Raquel; Tamayo, Eduardo; Howrylak, Judith A; Choi, Augustine; Parnell, Grant P; Tang, Benjamin; Nichols, Marshall; Woods, Christopher W; Ginsburg, Geoffrey S; Kingsmore, Stephen F; Omberg, Larsson; Mangravite, Lara M; Wong, Hector R; Tsalik, Ephraim L; Langley, Raymond J; Khatri, Purvesh |
Critical care medicine. |
29537985 |
2018 Mar 13; |
| Anytime Exploration for Multi-armed Bandits using Confidence Information. |
Jun, Kwang-Sung; Nowak, Robert |
JMLR workshop and conference proceedings. |
29541329 |
2016 Jun; |
| Adding Reg3? to the acute coronary syndrome prognostic marker list. |
Lindsey, Merry L; Mouton, Alan J; Ma, Yonggang |
International journal of cardiology. |
29544938 |
2018 05 01; |
| Emotional Processing in Obsessive-Compulsive Disorder: A Systematic Review and Meta-analysis of 25 Functional Neuroimaging Studies. |
Thorsen, Anders Lillevik; Hagland, Pernille; Radua, Joaquim; Mataix-Cols, David; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile A |
Biological psychiatry. Cognitive neuroscience and neuroimaging. |
29550459 |
2018 Feb 03; |
| Developing Optimized Adaptive Interventions in Education. |
Almirall, Daniel; Kasari, Connie; McCaffrey, Daniel F; Nahum-Shani, Inbal |
Journal of research on educational effectiveness. |
29552270 |
2018; |
| Predicting Daily Activities From Egocentric Images Using Deep Learning. |
Castro, Daniel; Hickson, Steven; Bettadapura, Vinay; Thomaz, Edison; Abowd, Gregory; Christensen, Henrik; Essa, Irfan |
Proceedings. International Symposium on Wearable Computers. |
29553145 |
2015 Aug; |
| Linear assembly of a human centromere on the Y chromosome. |
Jain, Miten; Olsen, Hugh E; Turner, Daniel J; Stoddart, David; Bulazel, Kira V; Paten, Benedict; Haussler, David; Willard, Huntington F; Akeson, Mark; Miga, Karen H |
Nature biotechnology. |
29553574 |
2018 Mar 19; |
| Extending the Construct Network of Trait Disinhibition to the Neuroimaging Domain: Validation of a Bridging Scale for Use in the European IMAGEN Project. |
Brislin, Sarah J; Patrick, Christopher J; Flor, Herta; Nees, Frauke; Heinrich, Angela; Drislane, Laura E; Yancey, James R; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; van Noort, Betteke; Grimmer, Yvonne; Fadai, Tahmine; Schumann, Gunter; Foell, Jens |
Assessment. |
29557190 |
2019 06; |
| PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets. |
Martínez-Bartolomé, Salvador; Medina-Aunon, J Alberto; López-García, Miguel Ángel; González-Tejedo, Carmen; Prieto, Gorka; Navajas, Rosana; Salazar-Donate, Emilio; Fernández-Costa, Carolina; Yates 3rd, John R; Albar, Juan Pablo |
Journal of proteome research. |
29558135 |
2018 04 06; |
| QSAR-Driven Design and Discovery of Novel Compounds With Antiplasmodial and Transmission Blocking Activities. |
Lima, Marilia N N; Melo-Filho, Cleber C; Cassiano, Gustavo C; Neves, Bruno J; Alves, Vinicius M; Braga, Rodolpho C; Cravo, Pedro V L; Muratov, Eugene N; Calit, Juliana; Bargieri, Daniel Y; Costa, Fabio T M; Andrade, Carolina H |
Frontiers in pharmacology. |
29559909 |
2018; |
| Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. |
Thybert, David; Roller, Maša; Navarro, Fábio C P; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janoušek, Václav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C; Laukaitis, Christina M; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M; Odom, Duncan T; Flicek, Paul |
Genome research |
29563166 |
2018 Apr |
| Biomedical informatics and machine learning for clinical genomics. |
Diao, James A; Kohane, Isaac S; Manrai, Arjun K |
Human molecular genetics. |
29566172 |
2018 May 01; |
| Interaction between striatal volume and DAT1 polymorphism predicts working memory development during adolescence. |
Nemmi, F; Nymberg, C; Darki, F; Banaschewski, T; Bokde, A L W; Büchel, C; Flor, H; Frouin, V; Garavan, H; Gowland, P; Heinz, A; Martinot, J-L; Nees, F; Paus, T; Smolka, M N; Robbins, T W; Schumann, G; Klingberg, T; IMAGEN consortium |
Developmental cognitive neuroscience. |
29567584 |
2018 04; |
| Genetic Drivers of Pancreatic Islet Function. |
Keller, Mark P; Gatti, Daniel M; Schueler, Kathryn L; Rabaglia, Mary E; Stapleton, Donnie S; Simecek, Petr; Vincent, Matthew; Allen, Sadie; Broman, Aimee Teo; Bacher, Rhonda; Kendziorski, Christina; Broman, Karl W; Yandell, Brian S; Churchill, Gary A; Att |
Genetics. |
29567659 |
2018 05; |
| Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression. |
Wilson, Ander; Zigler, Corwin M; Patel, Chirag J; Dominici, Francesca |
Biometrics. |
29569228 |
2018 09; |
| Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines. |
Ellrott, Kyle; Bailey, Matthew H; Saksena, Gordon; Covington, Kyle R; Kandoth, Cyriac; Stewart, Chip; Hess, Julian; Ma, Singer; Chiotti, Kami E; McLellan, Michael; Sofia, Heidi J; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li; MC3 Working Group; Cancer Genome Atlas Research Network |
Cell systems. |
29596782 |
2018 Mar 28; |
| SnapVX: A Network-Based Convex Optimization Solver. |
Hallac, David; Wong, Christopher; Diamond, Steven; Sharang, Abhijit; Sosi?, Rok; Boyd, Stephen; Leskovec, Jure |
Journal of machine learning research : JMLR. |
29599649 |
2017; |
| Optimizing Digital Integrated Care via Micro-Randomized Trials. |
Walton, Ashley; Nahum-Shani, Inbal; Crosby, Lori; Klasnja, Predrag; Murphy, Susan |
Clinical pharmacology and therapeutics. |
29604043 |
2018 Mar 31; |
| Physical activity is associated with changes in knee cartilage microstructure. |
Halilaj, E; Hastie, T J; Gold, G E; Delp, S L |
Osteoarthritis and cartilage. |
29605382 |
2018 Jun; |
| Binary Classifier Calibration Using an Ensemble of Piecewise Linear Regression Models. |
Naeini, Mahdi Pakdaman; Cooper, Gregory F |
Knowledge and information systems. |
29606784 |
2018 Jan; |
| Implementing Wearable Sensors for Continuous Assessment of Daytime Heart Rate Response in Inpatient Rehabilitation. |
Weeks, Douglas L; Sprint, Gina L; Stilwill, Virgeen; Meisen-Vehrs, Amy Lou; Cook, Diane J |
Telemedicine journal and e-health : the official journal of the American Telemedicine Association. |
29608421 |
2018 Apr 02; |
| Structural dynamics is a determinant of the functional significance of missense variants. |
Ponzoni, Luca; Bahar, Ivet |
Proceedings of the National Academy of Sciences of the United States of America. |
29610305 |
2018 Apr 17; |
| Presurgical localization and spatial shift of resting state networks in patients with brain metastases. |
Ding, Ju-Rong; Zhu, Fangmei; Hua, Bo; Xiong, Xingzhong; Wen, Yuqiao; Ding, Zhongxiang; Thompson, Paul M |
Brain imaging and behavior. |
29611075 |
2018 Apr 02; |
| Magnetic resonance imaging does not reveal structural alterations in the brain of grapheme-color synesthetes. |
Dojat, Michel; Pizzagalli, Fabrizio; Hupé, Jean-Michel |
PloS one. |
29617401 |
2018; |
| Cell-centred meta-analysis reveals baseline predictors of anti-TNF? non-response in biopsy and blood of patients with IBD. |
Gaujoux, Renaud; Starosvetsky, Elina; Maimon, Naama; Vallania, Francesco; Bar-Yoseph, Haggai; Pressman, Sigal; Weisshof, Roni; Goren, Idan; Rabinowitz, Keren; Waterman, Matti; Yanai, Henit; Dotan, Iris; Sabo, Edmond; Chowers, Yehuda; Khatri, Purvesh; Shen-Orr, Shai S; Israeli IBD research Network (IIRN) |
Gut. |
29618496 |
2019 04; |
| Opportunities and obstacles for deep learning in biology and medicine. |
Ching, Travers; Himmelstein, Daniel S; Beaulieu-Jones, Brett K; Kalinin, Alexandr A; Do, Brian T; Way, Gregory P; Ferrero, Enrico; Agapow, Paul-Michael; Zietz, Michael; Hoffman, Michael M; Xie, Wei; Rosen, Gail L; Lengerich, Benjamin J; Israeli, Johnny; L |
Journal of the Royal Society, Interface. |
29618526 |
2018 Apr; |
| Content Is King: Databases Preserve the Collective Information of Science. |
Yates 3rd, John R |
Journal of biomolecular techniques : JBT. |
29618955 |
2018 Apr; |
| Ketamine and ketamine metabolites as novel estrogen receptor ligands: Induction of cytochrome P450 and AMPA glutamate receptor gene expression. |
Ho, Ming-Fen; Correia, Cristina; Ingle, James N; Kaddurah-Daouk, Rima; Wang, Liewei; Kaufmann, Scott H; Weinshilboum, Richard M |
Biochemical pharmacology. |
29621538 |
2018 Jun; |
| Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture. |
Can, Anil; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Stroke. |
29622625 |
2018 May; |
| Computer-Aided Discovery and Characterization of Novel Ebola Virus Inhibitors. |
Capuzzi, Stephen J; Sun, Wei; Muratov, Eugene N; Martínez-Romero, Carles; He, Shihua; Zhu, Wenjun; Li, Hao; Tawa, Gregory; Fisher, Ethan G; Xu, Miao; Shinn, Paul; Qiu, Xiangguo; García-Sastre, Adolfo; Zheng, Wei; Tropsha, Alexander |
Journal of medicinal chemistry. |
29624387 |
2018 04 26; |
| Using Smart City Technology to Make Healthcare Smarter. |
Cook, Diane J; Duncan, Glen; Sprint, Gina; Fritz, Roschelle |
Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. |
29628528 |
2018 Apr; |
| RSTensorFlow: GPU Enabled TensorFlow for Deep Learning on Commodity Android Devices. |
Alzantot, Moustafa; Wang, Yingnan; Ren, Zhengshuang; Srivastava, Mani B |
MobiSys ... : the ... International Conference on Mobile Systems, Applications and Services. International Conference on Mobile Systems, Applications, and Services. |
29629431 |
2017 Jun; |
| Emu: Engagement Modeling for User Studies. |
Ho, Bo-Jhang; Nikzad, Nima; Balaji, Bharathan; Srivastava, Mani |
Proceedings of the ... ACM International Conference on Ubiquitous Computing . UbiComp (Conference). |
29629432 |
2017 Sep; |
| CIDER: Enhancing the Performance of Computational Eyeglasses. |
Mayberry, Addison; Tun, Yamin; Hu, Pan; Smith-Freedman, Duncan; Marlin, Benjamin; Salthouse, Christopher; Ganesan, Deepak |
Proceedings. Eye Tracking Research & Applications Symposium. |
29629433 |
2016 Mar; |
| SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications. |
Kalinin, Alexandr A; Palanimalai, Selvam; Dinov, Ivo D |
Proceedings of the 2nd Workshop on Human-In-the-Loop Data Analytics. Workshop on Human-In-the-Loop Data Analytics (2nd : 2017 : Chicago, Ill.). |
29630069 |
2017 Apr; |
| Massive mining of publicly available RNA-seq data from human and mouse. |
Lachmann, Alexander; Torre, Denis; Keenan, Alexandra B; Jagodnik, Kathleen M; Lee, Hoyjin J; Wang, Lily; Silverstein, Moshe C; Ma'ayan, Avi |
Nature communications. |
29636450 |
; |
| Whole Brain Magnetic Resonance Spectroscopic Determinants of Functional Outcomes in Pediatric Moderate/Severe Traumatic Brain Injury. |
Babikian, Talin; Alger, Jeffry R; Ellis-Blied, Monica U; Giza, Christopher C; Dennis, Emily; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeff; Thompson, Paul M; Asarnow, Robert F |
Journal of neurotrauma. |
29649959 |
2018 07 15; |
| Effects of green tea on miRNA and microbiome of oral epithelium. |
Adami, Guy R; Tangney, Christy C; Tang, Jessica L; Zhou, Yalu; Ghaffari, Saba; Naqib, Ankur; Sinha, Saurabh; Green, Stefan J; Schwartz, Joel L |
Scientific reports. |
29651001 |
2018 Apr 12; |
| Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments. |
Canver, Matthew C; Haeussler, Maximilian; Bauer, Daniel E; Orkin, Stuart H; Sanjana, Neville E; Shalem, Ophir; Yuan, Guo-Cheng; Zhang, Feng; Concordet, Jean-Paul; Pinello, Luca |
Nature protocols |
29651054 |
2018 May |
| Individual differences in stop-related activity are inflated by the adaptive algorithm in the stop signal task. |
D'Alberto, Nicholas; Chaarani, Bader; Orr, Catherine A; Spechler, Philip A; Albaugh, Matthew D; Allgaier, Nicholas; Wonnell, Alexander; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Itterman, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Robbins, Trevor W; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra S; Garavan, Hugh |
Human brain mapping. |
29656430 |
2018 Apr 15; |
| Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation. |
Kim, Miran; Song, Yongsoo; Wang, Shuang; Xia, Yuhou; Jiang, Xiaoqian |
JMIR medical informatics. |
29666041 |
2018 Apr 17; |
| SeleCon: Scalable IoT Device Selection and Control Using Hand Gestures. |
Alanwar, Amr; Alzantot, Moustafa; Ho, Bo-Jhang; Martin, Paul; Srivastava, Mani |
IoTDI 2017 : 2017 IEEE/ACM Second International Conference on Internet-of-Things Design and Implementation : proceedings : 18-20 April 2017, Pittsburgh, Pennsylvania, USA. IoTDI (Conference) (2nd : 2017 : Pittsburgh, Pa.). |
29683151 |
2017 Apr; |
| Multimodal Teaching Analytics: Automated Extraction of Orchestration Graphs from Wearable Sensor Data. |
Prieto, Luis P; Sharma, Kshitij; Kidzinski, ?ukasz; Rodríguez-Triana, María Jesús; Dillenbourg, Pierre |
Journal of computer assisted learning. |
29686446 |
2018 Apr; |
| FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. |
Vita, Randi; Overton, James A; Mungall, Christopher J; Sette, Alessandro; Peters, Bjoern |
Database : the journal of biological databases and curation. |
29688354 |
2018 01 01; |
| Micropublication: incentivizing community curation and placing unpublished data into the public domain. |
Raciti, Daniela; Yook, Karen; Harris, Todd W; Schedl, Tim; Sternberg, Paul W |
Database : the journal of biological databases and curation. |
29688367 |
2018 01 01; |
| Testing associations between cannabis use and subcortical volumes in two large population-based samples. |
Gillespie, Nathan A; Neale, Michael C; Bates, Timothy C; Eyler, Lisa T; Fennema-Notestine, Christine; Vassileva, Jasmin; Lyons, Michael J; Prom-Wormley, Elizabeth C; McMahon, Katie L; Thompson, Paul M; de Zubicaray, Greig; Hickie, Ian B; McGrath, John J; Strike, Lachlan T; Rentería, Miguel E; Panizzon, Matthew S; Martin, Nicholas G; Franz, Carol E; Kremen, William S; Wright, Margaret J |
Addiction (Abingdon, England). |
29691937 |
2018 Apr 24; |
| Deep learning in pharmacogenomics: from gene regulation to patient stratification. |
Kalinin, Alexandr A; Higgins, Gerald A; Reamaroon, Narathip; Soroushmehr, Sayedmohammadreza; Allyn-Feuer, Ari; Dinov, Ivo D; Najarian, Kayvan; Athey, Brian D |
Pharmacogenomics. |
29697304 |
2018 05; |
| Personal Omics for Precision Health. |
Kellogg, Ryan A; Dunn, Jessilyn; Snyder, Michael P |
Circulation research. |
29700064 |
2018 04 27; |
| Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine. |
NULL |
Circulation research. |
29700073 |
2018 Apr 27; |
| A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. |
NULL |
Scientific reports. |
29700343 |
2018 Apr 26; |
| Quantifying predictive capability of electronic health records for the most harmful breast cancer. |
Wu, Yirong; Fan, Jun; Peissig, Peggy; Berg, Richard; Tafti, Ahmad Pahlavan; Yin, Jie; Yuan, Ming; Page, David; Cox, Jennifer; Burnside, Elizabeth S |
Proceedings of SPIE--the International Society for Optical Engineering. |
29706685 |
2018 Feb; |
| Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. |
Agniel, Denis; Kohane, Isaac S; Weber, Griffin M |
BMJ (Clinical research ed.). |
29712648 |
2018 04 30; |
| Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. |
Mulugeta, Lealem; Drach, Andrew; Erdemir, Ahmet; Hunt, C A; Horner, Marc; Ku, Joy P; Myers Jr, Jerry G; Vadigepalli, Rajanikanth; Lytton, William W |
Frontiers in neuroinformatics. |
29713272 |
2018; |
| Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization. |
Ponzoni, Luca; Zhang, She; Cheng, Mary Hongying; Bahar, Ivet |
Philosophical transactions of the Royal Society of London. Series B, Biological sciences. |
29735731 |
2018 06 19; |
| Uniform resolution of compact identifiers for biomedical data. |
Wimalaratne, Sarala M; Juty, Nick; Kunze, John; Janée, Greg; McMurry, Julie A; Beard, Niall; Jimenez, Rafael; Grethe, Jeffrey S; Hermjakob, Henning; Martone, Maryann E; Clark, Tim |
Scientific data. |
29737976 |
2018 05 08; |
| Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease. |
Gao, Chao; Sun, Hanbo; Wang, Tuo; Tang, Ming; Bohnen, Nicolaas I; Müller, Martijn L T M; Herman, Talia; Giladi, Nir; Kalinin, Alexandr; Spino, Cathie; Dauer, William; Hausdorff, Jeffrey M; Dinov, Ivo D |
Scientific reports. |
29740058 |
2018 05 08; |
| A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. |
Zhao, Yongan; Wang, Xiaofeng; Tang, Haixu |
Journal of computational biology : a journal of computational molecular cell biology. |
29741956 |
2018 06; |
| Diverse reprogramming codes for neuronal identity. |
Tsunemoto, Rachel; Lee, Sohyon; Sz?cs, Attila; Chubukov, Pavel; Sokolova, Irina; Blanchard, Joel W; Eade, Kevin T; Bruggemann, Jacob; Wu, Chunlei; Torkamani, Ali; Sanna, Pietro Paolo; Baldwin, Kristin K |
Nature. |
29743677 |
2018 05; |
| Magnetic resonance spectroscopy of fiber tracts in children with traumatic brain injury: A combined MRS - Diffusion MRI study. |
Dennis, Emily L; Babikian, Talin; Alger, Jeffry; Rashid, Faisal; Villalon-Reina, Julio E; Jin, Yan; Olsen, Alexander; Mink, Richard; Babbitt, Christopher; Johnson, Jeffrey; Giza, Christopher C; Thompson, Paul M; Asarnow, Robert F |
Human brain mapping. |
29749094 |
2018 May 10; |
| Assigning matrix metalloproteinase roles in ischaemic cardiac remodelling. |
Lindsey, Merry L |
Nature reviews. Cardiology. |
29752454 |
2018 May 11; |
| HUMAN DECISIONS AND MACHINE PREDICTIONS. |
Kleinberg, Jon; Lakkaraju, Himabindu; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil |
The quarterly journal of economics. |
29755141 |
2018 Feb 01; |
| A Constraint Optimization Approach to Causal Discovery from Subsampled Time Series Data. |
Hyttinen, Antti; Plis, Sergey; Järvisalo, Matti; Eberhardt, Frederick; Danks, David |
International journal of approximate reasoning : official publication of the North American Fuzzy Information Processing Society. |
29755201 |
2017 Nov; |
| Pharmacovigilance via Baseline Regularization with Large-Scale Longitudinal Observational Data. |
Kuang, Zhaobin; Peissig, Peggy; Costa, Vítor Santos; Maclin, Richard; Page, David |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29755826 |
2017 Aug; |
| Experiences with Deriva: An Asset Management Platform for Accelerating eScience. |
Bugacov, Alejandro; Czajkowski, Karl; Kesselman, Carl; Kumar, Anoop; Schuler, Robert E; Tangmunarunkit, Hongsuda |
Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. |
29756001 |
2017 Oct; |
| ERMrest: A Collaborative Data Catalog with Fine Grain Access Control. |
Czajkowski, Karl; Kesselman, Carl; Schuler, Robert |
Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience. |
29756002 |
2017 Oct; |
| Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. |
Grove, Christian; Cain, Scott; Chen, Wen J; Davis, Paul; Harris, Todd; Howe, Kevin L; Kishore, Ranjana; Lee, Raymond; Paulini, Michael; Raciti, Daniela; Tuli, Mary Ann; Van Auken, Kimberly; Williams, Gary; WormBase Consortium |
Methods in molecular biology (Clifton, N.J.). |
29761466 |
2018; |
| Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium. |
Kong, Xiang-Zhen; Mathias, Samuel R; Guadalupe, Tulio; ENIGMA Laterality Working Group; Glahn, David C; Franke, Barbara; Crivello, Fabrice; Tzourio-Mazoyer, Nathalie; Fisher, Simon E; Thompson, Paul M; Francks, Clyde |
Proceedings of the National Academy of Sciences of the United States of America. |
29764998 |
; |
| Privacy-Preserving Predictive Modeling: Harmonization of Contextual Embeddings From Different Sources. |
Huang, Yingxiang; Lee, Junghye; Wang, Shuang; Sun, Jimeng; Liu, Hongfang; Jiang, Xiaoqian |
JMIR medical informatics |
29769172 |
2018 May 16 |
| Population-Scale Pervasive Health. |
Althoff, Tim |
IEEE pervasive computing. |
29770105 |
Oct-Dec 2017 |
| Snorkel: Rapid Training Data Creation with Weak Supervision. |
Ratner, Alexander; Bach, Stephen H; Ehrenberg, Henry; Fries, Jason; Wu, Sen; Ré, Christopher |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
29770249 |
; |
| Network Inference via the Time-Varying Graphical Lasso. |
Hallac, David; Park, Youngsuk; Boyd, Stephen; Leskovec, Jure |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29770256 |
; |
| Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data. |
Hallac, David; Vare, Sagar; Boyd, Stephen; Leskovec, Jure |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29770257 |
; |
| Local Higher-Order Graph Clustering. |
Yin, Hao; Benson, Austin R; Leskovec, Jure; Gleich, David F |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29770258 |
; |
| The Mouse Heart Attack Research Tool 1.0 database. |
DeLeon-Pennell, Kristine Y; Iyer, Rugmani Padmanabhan; Ma, Yonggang; Yabluchanskiy, Andriy; Zamilpa, Rogelio; Chiao, Ying Ann; Cannon, Presley L; Kaplan, Abdullah; Cates, Courtney A; Flynn, Elizabeth R; Halade, Ganesh V; de Castro Brás, Lisandra E; Lindse |
American journal of physiology. Heart and circulatory physiology. |
29775405 |
2018 Sep 01; |
| Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease. |
Liem, David A; Murali, Sanjana; Sigdel, Dibakar; Shi, Yu; Wang, Xuan; Shen, Jiaming; Choi, Howard; Caufield, John H; Wang, Wei; Ping, Peipei; Han, JiaWei |
American journal of physiology. Heart and circulatory physiology. |
29775406 |
2018 Oct 01; |
| Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology. |
Bae, J Alexander; Mu, Shang; Kim, Jinseop S; Turner, Nicholas L; Tartavull, Ignacio; Kemnitz, Nico; Jordan, Chris S; Norton, Alex D; Silversmith, William M; Prentki, Rachel; Sorek, Marissa; David, Celia; Jones, Devon L; Bland, Doug; Sterling, Amy L R; Park, Jungman; Briggman, Kevin L; Seung, H Sebastian; Eyewirers |
Cell. |
29775596 |
2018 05 17; |
| Development of an Algorithm to Identify Patients with Physician-Documented Insomnia. |
Kartoun, Uri; Aggarwal, Rahul; Beam, Andrew L; Pai, Jennifer K; Chatterjee, Arnaub K; Fitzgerald, Timothy P; Kohane, Isaac S; Shaw, Stanley Y |
Scientific reports. |
29777125 |
2018 May 18; |
| The Selective Labels Problem: Evaluating Algorithmic Predictions in the Presence of Unobservables. |
Lakkaraju, Himabindu; Kleinberg, Jon; Leskovec, Jure; Ludwig, Jens; Mullainathan, Sendhil |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
29780658 |
2017 Aug; |
| Modeling Individual Cyclic Variation in Human Behavior. |
Pierson, Emma; Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
29780976 |
2018 Apr; |
| Modeling Interdependent and Periodic Real-World Action Sequences. |
Kurashima, Takeshi; Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
29780977 |
2018 Apr; |
| I'll Be Back: On the Multiple Lives of Users of a Mobile Activity Tracking Application. |
Lin, Zhiyuan; Althoff, Tim; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
29780978 |
2018 Apr; |
| Weighted SGD for ? p Regression with Randomized Preconditioning. |
Yang, Jiyan; Chow, Yin-Lam; Ré, Christopher; Mahoney, Michael W |
Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. |
29782626 |
2016 Jan; |
| Classifying Alzheimer's disease with brain imaging and genetic data using a neural network framework. |
Ning, Kaida; Chen, Bo; Sun, Fengzhu; Hobel, Zachary; Zhao, Lu; Matloff, Will; Alzheimer's Disease Neuroimaging Initiative; Toga, Arthur W |
Neurobiology of aging. |
29784544 |
2018 Aug; |
| Stressful Life Events, ADHD Symptoms, and Brain Structure in Early Adolescence. |
Humphreys, Kathryn L; Watts, Emily L; Dennis, Emily L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H |
Journal of abnormal child psychology. |
29785533 |
2018 May 21; |
| PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. |
Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine P |
Journal of the American Medical Informatics Association : JAMIA. |
29788308 |
2018 10 01; |
| Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). |
Lill, Jennie R; van Veelen, Peter A; Tenzer, Stefan; Admon, Arie; Caron, Etienne; Elias, Joshua E; Heck, Albert J R; Marcilla, Miguel; Marino, Fabio; Müller, Markus; Peters, Bjoern; Purcell, Anthony; Sette, Alessandro; Sturm, Theo; Ternette, Nicola; Vizca |
Proteomics. |
29791771 |
2018 Jun; |
| A Flow Procedure for Linearization of Genome Sequence Graphs. |
Haussler, David; Smuga-Otto, Maciej; Eizenga, Jordan M; Paten, Benedict; Novak, Adam M; Nikitin, Sergei; Zueva, Maria; Miagkov, Dmitrii |
Journal of computational biology : a journal of computational molecular cell biology. |
29792514 |
2018 07; |
| Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews. |
Cheng Ye, M S; Fabbri, Daniel |
Journal of biomedical informatics. |
29793071 |
; |
| Progress Toward Cancer Data Ecosystems. |
Grossman, Robert L |
Cancer journal (Sudbury, Mass.). |
29794537 |
2018 May/Jun; |
| eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks. |
Clarke, Daniel J B; Kuleshov, Maxim V; Schilder, Brian M; Torre, Denis; Duffy, Mary E; Keenan, Alexandra B; Lachmann, Alexander; Feldmann, Axel S; Gundersen, Gregory W; Silverstein, Moshe C; Wang, Zichen; Ma'ayan, Avi |
Nucleic acids research. |
29800326 |
2018 Jul 02; |
| Multi-Descriptor Read Across (MuDRA): A Simple and Transparent Approach for Developing Accurate Quantitative Structure-Activity Relationship Models. |
Alves, Vinicius M; Golbraikh, Alexander; Capuzzi, Stephen J; Liu, Kammy; Lam, Wai In; Korn, Daniel Robert; Pozefsky, Diane; Andrade, Carolina Horta; Muratov, Eugene N; Tropsha, Alexander |
Journal of chemical information and modeling. |
29809005 |
2018 06 25; |
| Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms. |
Can, Anil; Rudy, Robert F; Castro, Victor M; Dligach, Dmitriy; Finan, Sean; Yu, Sheng; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Stroke. |
29844027 |
2018 Jul; |
| Framing Electronic Medical Records as Polylingual Documents in Query Expansion. |
Huang, Edward W; Wang, Sheng; Lee, Doris Jung-Lin; Zhang, Runshun; Liu, Baoyan; Zhou, Xuezhong; Zhai, ChengXiang |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854161 |
2017; |
| Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. |
Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark A |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854196 |
2017; |
| Mining Hierarchies and Similarity Clusters from Value Set Repositories. |
Peterson, Kevin J; Jiang, Guoqian; Brue, Scott M; Shen, Feichen; Liu, Hongfang |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854206 |
2017; |
| A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. |
Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, Lucila |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854240 |
2017; |
| SCOTCH: Secure Counting Of encrypTed genomiC data using a Hybrid approach. |
Chenghong, Wang; Jiang, Yichen; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Al Aziz, Md Momin; Sadat, Md Nazmus; Wang, Shuang |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
29854245 |
2017; |
| Association between inflammation and systolic blood pressure in RA compared to patients without RA. |
Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine P |
Arthritis research & therapy. |
29855349 |
2018 Jun 01; |
| Quantifying the Impact of Rare and Ultra-rare Coding Variation across the Phenotypic Spectrum. |
Ganna, Andrea; Satterstrom, F Kyle; Zekavat, Seyedeh M; Das, Indraniel; Kurki, Mitja I; Churchhouse, Claire; Alfoldi, Jessica; Martin, Alicia R; Havulinna, Aki S; Byrnes, Andrea; Thompson, Wesley K; Nielsen, Philip R; Karczewski, Konrad J; Saarentaus, Elm |
American journal of human genetics. |
29861106 |
2018 Jun 07; |
| Big data sharing and analysis to advance research in post-traumatic epilepsy. |
Duncan, Dominique; Vespa, Paul; Pitkänen, Asla; Braimah, Adebayo; Lapinlampi, Niina; Toga, Arthur W |
Neurobiology of disease. |
29864492 |
2018 Jun 01; |
| The Added Value of Diffusion-Weighted MRI-Derived Structural Connectome in Evaluating Mild Cognitive Impairment: A Multi-Cohort Validation1. |
Wang, Qi; Guo, Lei; Thompson, Paul M; Jack, Clifford R; Dodge, Hiroko; Zhan, Liang; Zhou, Jiayu; Alzheimer?s Disease Neuroimaging Initiative and National Alzheimer?s Coordinating Center |
Journal of Alzheimer's disease : JAD. |
29865049 |
2018; |
| Acute changes in foot strike pattern and cadence affect running parameters associated with tibial stress fractures. |
Yong, Jennifer R; Silder, Amy; Montgomery, Kate L; Fredericson, Michael; Delp, Scott L |
Journal of biomechanics. |
29866518 |
2018 Jul 25; |
| Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. |
Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, Jaideep |
IEEE internet computing. |
29867290 |
2018 Mar-Apr; |
| Mapping macrophage polarization over the myocardial infarction time continuum. |
Mouton, Alan J; DeLeon-Pennell, Kristine Y; Rivera Gonzalez, Osvaldo J; Flynn, Elizabeth R; Freeman, Tom C; Saucerman, Jeffrey J; Garrett, Michael R; Ma, Yonggang; Harmancey, Romain; Lindsey, Merry L |
Basic research in cardiology. |
29868933 |
2018 Jun 04; |
| Data Programming: Creating Large Training Sets, Quickly. |
Ratner, Alexander; De Sa, Christopher; Wu, Sen; Selsam, Daniel; Ré, Christopher |
Advances in neural information processing systems. |
29872252 |
2016 Dec; |
| Predicting Adverse Drug Effects from Literature- and Database-Mined Assertions. |
La, Mary K; Sedykh, Alexander; Fourches, Denis; Muratov, Eugene; Tropsha, Alexander |
Drug safety. |
29876834 |
2018 Jun 06; |
| High-resolution comparative analysis of great ape genomes. |
Kronenberg, Zev N; Fiddes, Ian T; Gordon, David; Murali, Shwetha; Cantsilieris, Stuart; Meyerson, Olivia S; Underwood, Jason G; Nelson, Bradley J; Chaisson, Mark J P; Dougherty, Max L; Munson, Katherine M; Hastie, Alex R; Diekhans, Mark; Hormozdiari, Fere |
Science (New York, N.Y.). |
29880660 |
; |
| Multiple Testing of Submatrices of a Precision Matrix with Applications to Identification of Between Pathway Interactions. |
Xia, Yin; Cai, Tianxi; Cai, T Tony |
Journal of the American Statistical Association. |
29881130 |
; |
| Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation. |
Fiddes, Ian T; Armstrong, Joel; Diekhans, Mark; Nachtweide, Stefanie; Kronenberg, Zev N; Underwood, Jason G; Gordon, David; Earl, Dent; Keane, Thomas; Eichler, Evan E; Haussler, David; Stanke, Mario; Paten, Benedict |
Genome research. |
29884752 |
; |
| What's in a Note? Unpacking Predictive Value in Clinical Note Representations. |
Boag, Willie; Doss, Dustin; Naumann, Tristan; Szolovits, Peter |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888035 |
2018; |
| Real-time Protection of Genomic Data Sharing in Beacon Services. |
Bu, Diyue; Wang, Xiaofeng; Tang, Haixu |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888039 |
2018; |
| Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data. |
Hong, Na; Wen, Andrew; Shen, Feichen; Sohn, Sunghwan; Liu, Sijia; Liu, Hongfang; Jiang, Guoqian |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888045 |
2018; |
| Utility of Genetic Testing in Addition to Mammography for Determining Risk of Breast Cancer Depends on Patient Age. |
Feld, Shara I; Fan, Jun; Yuan, Ming; Wu, Yirong; Woo, Kaitlin M; Alexandridis, Roxana; Burnside, Elizabeth S |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888046 |
2018; |
| A Crowdsourcing Framework for Medical Data Sets. |
Ye, Cheng; Coco, Joseph; Epishova, Anna; Hajaj, Chen; Bogardus, Henry; Novak, Laurie; Denny, Joshua; Vorobeychik, Yevgeniy; Lasko, Thomas; Malin, Bradley; Fabbri, Daniel |
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
29888085 |
2018; |
| Network-based approaches to examining stress in the adolescent brain. |
Ho, Tiffany C; Dennis, Emily L; Thompson, Paul M; Gotlib, Ian H |
Neurobiology of stress. |
29888310 |
2018 Feb; |
| The initiation of cannabis use in adolescence is predicted by sex-specific psychosocial and neurobiological features. |
Spechler, Philip A; Allgaier, Nicholas; Chaarani, Bader; Whelan, Robert; Watts, Richard; Orr, Catherine; Albaugh, Matthew D; D'Alberto, Nicholas; Higgins, Stephen T; Hudson, Kelsey E; Mackey, Scott; Potter, Alexandra; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Althoff, Robert R; Garavan, Hugh; IMAGEN Consortium |
The European journal of neuroscience. |
29889330 |
2019 08; |
| Large-scale mapping of cortical alterations in 22q11.2 deletion syndrome: Convergence with idiopathic psychosis and effects of deletion size. |
Sun, Daqiang; Ching, Christopher R K; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Villalon-Reina, Julio E; Qu, Xiaoping; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Vorstman, Jacob; Fiksinski, Ania; Koops, Sanne; Ruparel, Kosha; Roalf, David R; Gur, Raquel E; Schmitt, J Eric; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Bassett, Anne S; Chow, Eva W C; Butcher, Nancy J; Vila-Rodriguez, Fidel; Doherty, Joanne; Cunningham, Adam; van den Bree, Marianne B M; Linden, David E J; Moss, Hayley; Owen, Michael J; Murphy, Kieran C; McDonald-McGinn, Donna M; Emanuel, Beverly; van Erp, Theo G M; Turner, Jessica A; Thompson, Paul M; Bearden, Carrie E |
Molecular psychiatry. |
29895892 |
2018 Jun 13; |
| Prompting Technology and Persons With Dementia: The Significance of Context and Communication. |
Braley, Rachel; Fritz, Rochelle; Van Son, Catherine R; Schmitter-Edgecombe, Maureen |
The Gerontologist |
29897450 |
2019 01 09 |
| Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation. |
Hanson, Casey; Cairns, Junmei; Wang, Liewei; Sinha, Saurabh |
Genome research. |
29898900 |
2018 08; |
| Causal Discovery from Temporally Aggregated Time Series. |
Gong, Mingming; Zhang, Kun; Schölkopf, Bernhard; Glymour, Clark; Tao, Dacheng |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
29899680 |
2017 Aug; |
| A Hierarchical Framework for State-Space Matrix Inference and Clustering. |
Zuo, Chandler; Chen, Kailei; Hewitt, Kyle J; Bresnick, Emery H; Kele?, Sündüz |
The annals of applied statistics. |
29910842 |
2016 Sep; |
| Reg-ulating macrophage infiltration to alter wound healing following myocardial infarction. |
Lindsey, Merry L |
Cardiovascular research. |
29912288 |
2018 Oct 01; |
| Ventromedial Prefrontal Volume in Adolescence Predicts Hyperactive/Inattentive Symptoms in Adulthood. |
Albaugh, Matthew D; Ivanova, Masha; Chaarani, Bader; Orr, Catherine; Allgaier, Nicholas; Althoff, Robert R; D' Alberto, Nicholas; Hudson, Kelsey; Mackey, Scott; Spechler, Philip A; Banaschewski, Tobias; Brühl, Rüdiger; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Cattrell, Anna; Conrod, Patricia J; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Goodman, Robert; Gowland, Penny; Grimmer, Yvonne; Heinz, Andreas; Kappel, Viola; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Penttilä, Jani; Poustka, Luise; Paus, Tomá?; Smolka, Michael N; Struve, Maren; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Garavan, Hugh; Potter, Alexandra S |
Cerebral cortex (New York, N.Y. : 1991). |
29912404 |
2019 05 01; |
| Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. |
Stathias, Vasileios; Koleti, Amar; Vidovi?, Du?ica; Cooper, Daniel J; Jagodnik, Kathleen M; Terryn, Raymond; Forlin, Michele; Chung, Caty; Torre, Denis; Ayad, Nagi; Medvedovic, Mario; Ma'ayan, Avi; Pillai, Ajay; Schürer, Stephan C |
Scientific data. |
29917015 |
2018 Jun 19; |
| Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. |
Readhead, Ben; Haure-Mirande, Jean-Vianney; Funk, Cory C; Richards, Matthew A; Shannon, Paul; Haroutunian, Vahram; Sano, Mary; Liang, Winnie S; Beckmann, Noam D; Price, Nathan D; Reiman, Eric M; Schadt, Eric E; Ehrlich, Michelle E; Gandy, Sam; Dudley, Joel T |
Neuron. |
29937276 |
2018 Jul 11; |
| Fonduer: Knowledge Base Construction from Richly Formatted Data. |
NULL |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
29937618 |
2018 Jun; |
| Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. |
Savage, Jeanne E; Jansen, Philip R; Stringer, Sven; Watanabe, Kyoko; Bryois, Julien; de Leeuw, Christiaan A; Nagel, Mats; Awasthi, Swapnil; Barr, Peter B; Coleman, Jonathan R I; Grasby, Katrina L; Hammerschlag, Anke R; Kaminski, Jakob A; Karlsson, Robert; Krapohl, Eva; Lam, Max; Nygaard, Marianne; Reynolds, Chandra A; Trampush, Joey W; Young, Hannah; Zabaneh, Delilah; Hägg, Sara; Hansell, Narelle K; Karlsson, Ida K; Linnarsson, Sten; Montgomery, Grant W; Muñoz-Manchado, Ana B; Quinlan, Erin B; Schumann, Gunter; Skene, Nathan G; Webb, Bradley T; White, Tonya; Arking, Dan E; Avramopoulos, Dimitrios; Bilder, Robert M; Bitsios, Panos; Burdick, Katherine E; Cannon, Tyrone D; Chiba-Falek, Ornit; Christoforou, Andrea; Cirulli, Elizabeth T; Congdon, Eliza; Corvin, Aiden; Davies, Gail; Deary, Ian J; DeRosse, Pamela; Dickinson, Dwight; Djurovic, Srdjan; Donohoe, Gary; Conley, Emily Drabant; Eriksson, Johan G; Espeseth, Thomas; Freimer, Nelson A; Giakoumaki, Stella; Giegling, Ina; Gill, Michael; Glahn, David C; Hariri, Ahmad R; Hatzimanolis, Alex; Keller, Matthew C; Knowles, Emma; Koltai, Deborah; Konte, Bettina; Lahti, Jari; Le Hellard, Stephanie; Lencz, Todd; Liewald, David C; London, Edythe; Lundervold, Astri J; Malhotra, Anil K; Melle, Ingrid; Morris, Derek; Need, Anna C; Ollier, William; Palotie, Aarno; Payton, Antony; Pendleton, Neil; Poldrack, Russell A; Räikkönen, Katri; Reinvang, Ivar; Roussos, Panos; Rujescu, Dan; Sabb, Fred W; Scult, Matthew A; Smeland, Olav B; Smyrnis, Nikolaos; Starr, John M; Steen, Vidar M; Stefanis, Nikos C; Straub, Richard E; Sundet, Kjetil; Tiemeier, Henning; Voineskos, Aristotle N; Weinberger, Daniel R; Widen, Elisabeth; Yu, Jin; Abecasis, Goncalo; Andreassen, Ole A; Breen, Gerome; Christiansen, Lene; Debrabant, Birgit; Dick, Danielle M; Heinz, Andreas; Hjerling-Leffler, Jens; Ikram, M Arfan; Kendler, Kenneth S; Martin, Nicholas G; Medland, Sarah E; Pedersen, Nancy L; Plomin, Robert; Polderman, Tinca J C; Ripke, Stephan; van der Sluis, Sophie; Sullivan, Patrick F; Vrieze, Scott I; Wright, Margaret J; Posthuma, Danielle |
Nature genetics. |
29942086 |
2018 Jul; |
| A design framework and exemplar metrics for FAIRness. |
Wilkinson, Mark D; Sansone, Susanna-Assunta; Schultes, Erik; Doorn, Peter; Bonino da Silva Santos, Luiz Olavo; Dumontier, Michel |
Scientific data. |
29944145 |
2018 06 26; |
| Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. |
Smit, Dirk J A; Wright, Margaret J; Meyers, Jacquelyn L; Martin, Nicholas G; Ho, Yvonne Y W; Malone, Stephen M; Zhang, Jian; Burwell, Scott J; Chorlian, David B; de Geus, Eco J C; Denys, Damiaan; Hansell, Narelle K; Hottenga, Jouke-Jan; McGue, Matt; van Beijsterveldt, Catharina E M; Jahanshad, Neda; Thompson, Paul M; Whelan, Christopher D; Medland, Sarah E; Porjesz, Bernice; Lacono, William G; Boomsma, Dorret I |
Human brain mapping. |
29947131 |
2018 Jun 26; |
| Significant concordance of genetic variation that increases both the risk for obsessive-compulsive disorder and the volumes of the nucleus accumbens and putamen. |
Hibar, Derrek P; Cheung, Joshua W; Medland, Sarah E; Mufford, Mary S; Jahanshad, Neda; Dalvie, Shareefa; Ramesar, Raj; Stewart, Evelyn; van den Heuvel, Odile A; Pauls, David L; Knowles, James A; Stein, Dan J; Thompson, Paul M; Enhancing Neuro Imaging Genetics through Meta Analysis (ENIGMA) Consortium and International Obsessive Compulsive Disorder Foundation Genetics Collaborative (IOCDF-GC) |
The British journal of psychiatry : the journal of mental science. |
29947313 |
2018 Jul; |
| Talking the Walk: Perceptions of Neighborhood Characteristics from Users of Open Streets Programs in Latin America and the USA. |
Zieff, Susan G; Musselman, Elaine A; Sarmiento, Olga L; Gonzalez, Silvia A; Aguilar-Farias, Nicolas; Winter, Sandra J; Hipp, J Aaron; Quijano, Karoll; King, Abby C |
Journal of urban health : bulletin of the New York Academy of Medicine. |
29948785 |
2018 Dec; |
| Modeling polypharmacy side effects with graph convolutional networks. |
Zitnik, Marinka; Agrawal, Monica; Leskovec, Jure |
Bioinformatics (Oxford, England). |
29949996 |
2018 07 01; |
| SigMat: a classification scheme for gene signature matching. |
Xiao, Jinfeng; Blatti, Charles; Sinha, Saurabh |
Bioinformatics (Oxford, England). |
29950002 |
2018 Jul 01; |
| Prioritizing network communities. |
Zitnik, Marinka; Sosi?, Rok; Leskovec, Jure |
Nature communications. |
29959323 |
2018 06 29; |
| Cortical Brain Abnormalities in 4474 Individuals With Schizophrenia and 5098 Control Subjects via the Enhancing Neuro Imaging Genetics Through Meta Analysis (ENIGMA) Consortium. |
van Erp, Theo G M; Walton, Esther; Hibar, Derrek P; Schmaal, Lianne; Jiang, Wenhao; Glahn, David C; Pearlson, Godfrey D; Yao, Nailin; Fukunaga, Masaki; Hashimoto, Ryota; Okada, Naohiro; Yamamori, Hidenaga; Bustillo, Juan R; Clark, Vincent P; Agartz, Ingrid; Mueller, Bryon A; Cahn, Wiepke; de Zwarte, Sonja M C; Hulshoff Pol, Hilleke E; Kahn, René S; Ophoff, Roel A; van Haren, Neeltje E M; Andreassen, Ole A; Dale, Anders M; Doan, Nhat Trung; Gurholt, Tiril P; Hartberg, Cecilie B; Haukvik, Unn K; Jørgensen, Kjetil N; Lagerberg, Trine V; Melle, Ingrid; Westlye, Lars T; Gruber, Oliver; Kraemer, Bernd; Richter, Anja; Zilles, David; Calhoun, Vince D; Crespo-Facorro, Benedicto; Roiz-Santiañez, Roberto; Tordesillas-Gutiérrez, Diana; Loughland, Carmel; Carr, Vaughan J; Catts, Stanley; Cropley, Vanessa L; Fullerton, Janice M; Green, Melissa J; Henskens, Frans A; Jablensky, Assen; Lenroot, Rhoshel K; Mowry, Bryan J; Michie, Patricia T; Pantelis, Christos; Quidé, Yann; Schall, Ulrich; Scott, Rodney J; Cairns, Murray J; Seal, Marc; Tooney, Paul A; Rasser, Paul E; Cooper, Gavin; Shannon Weickert, Cynthia; Weickert, Thomas W; Morris, Derek W; Hong, Elliot; Kochunov, Peter; Beard, Lauren M; Gur, Raquel E; Gur, Ruben C; Satterthwaite, Theodore D; Wolf, Daniel H; Belger, Aysenil; Brown, Gregory G; Ford, Judith M; Macciardi, Fabio; Mathalon, Daniel H; O'Leary, Daniel S; Potkin, Steven G; Preda, Adrian; Voyvodic, James; Lim, Kelvin O; McEwen, Sarah; Yang, Fude; Tan, Yunlong; Tan, Shuping; Wang, Zhiren; Fan, Fengmei; Chen, Jingxu; Xiang, Hong; Tang, Shiyou; Guo, Hua; Wan, Ping; Wei, Dong; Bockholt, Henry J; Ehrlich, Stefan; Wolthusen, Rick P F; King, Margaret D; Shoemaker, Jody M; Sponheim, Scott R; De Haan, Lieuwe; Koenders, Laura; Machielsen, Marise W; van Amelsvoort, Therese; Veltman, Dick J; Assogna, Francesca; Banaj, Nerisa; de Rossi, Pietro; Iorio, Mariangela; Piras, Fabrizio; Spalletta, Gianfranco; McKenna, Peter J; Pomarol-Clotet, Edith; Salvador, Raymond; Corvin, Aiden; Donohoe, Gary; Kelly, Sinead; Whelan, Christopher D; Dickie, Erin W; Rotenberg, David; Voineskos, Aristotle N; Ciufolini, Simone; Radua, Joaquim; Dazzan, Paola; Murray, Robin; Reis Marques, Tiago; Simmons, Andrew; Borgwardt, Stefan; Egloff, Laura; Harrisberger, Fabienne; Riecher-Rössler, Anita; Smieskova, Renata; Alpert, Kathryn I; Wang, Lei; Jönsson, Erik G; Koops, Sanne; Sommer, Iris E C; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Neilson, Emma; Mayer, Andrew R; Stephen, Julia M; Kwon, Jun Soo; Yun, Je-Yeon; Cannon, Dara M; McDonald, Colm; Lebedeva, Irina; Tomyshev, Alexander S; Akhadov, Tolibjohn; Kaleda, Vasily; Fatouros-Bergman, Helena; Flyckt, Lena; Karolinska Schizophrenia Project; Busatto, Geraldo F; Rosa, Pedro G P; Serpa, Mauricio H; Zanetti, Marcus V; Hoschl, Cyril; Skoch, Antonin; Spaniel, Filip; Tomecek, David; Hagenaars, Saskia P; McIntosh, Andrew M; Whalley, Heather C; Lawrie, Stephen M; Knöchel, Christian; Oertel-Knöchel, Viola; Stäblein, Michael; Howells, Fleur M; Stein, Dan J; Temmingh, Henk S; Uhlmann, Anne; Lopez-Jaramillo, Carlos; Dima, Danai; McMahon, Agnes; Faskowitz, Joshua I; Gutman, Boris A; Jahanshad, Neda; Thompson, Paul M; Turner, Jessica A |
Biological psychiatry. |
29960671 |
2018 May 14; |
| Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. |
Saul, Michael C; Blatti, Charles; Yang, Wei; Bukhari, Syed A; Shpigler, Hagai Y; Troy, Joseph M; Seward, Christopher H; Sloofman, Laura; Chandrasekaran, Sriram; Bell, Alison M; Stubbs, Lisa; Robinson, Gene E; Zhao, Sihai D; Sinha, Saurabh |
Genes, brain, and behavior. |
29968347 |
2018 Jul 02; |
| Risk Factors for Colistin Resistance among Gram-Negative Rods and Klebsiella pneumoniae Isolates. |
Richter, Stefan E; Miller, Loren; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A |
Journal of clinical microbiology |
29976595 |
2018 09 |
| A Screening Rule for ?1-Regularized Ising Model Estimation. |
Kuang, Zhaobin; Geng, Sinong; Page, David |
Advances in neural information processing systems. |
29983538 |
2017 Dec; |
| Imaging genetics in neurodevelopmental psychopathology. |
Klein, Marieke; van Donkelaar, Marjolein; Verhoef, Ellen; Franke, Barbara |
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. |
29984470 |
2017 07; |
| Visual Analytics in Deep Learning: An Interrogative Survey for the Next Frontiers. |
Hohman, Fred Matthew; Kahng, Minsuk; Pienta, Robert; Chau, Duen Horng |
IEEE transactions on visualization and computer graphics. |
29993551 |
2018 Jun 04; |
| SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution. |
Sadat, Md Nazmus; Al Aziz, Md Momin; Mohammed, Noman; Chen, Feng; Jiang, Xiaoqian; Wang, Shuang |
IEEE/ACM transactions on computational biology and bioinformatics. |
29993695 |
2019 Jan-Feb; |
| SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol. |
Jiang, Yichen; Hamer, Jenny; Wang, Chenghong; Jiang, Xiaoqian; Kim, Miran; Song, Yongsoo; Xia, Yuhou; Mohammed, Noman; Sadat, Md Nazmus; Wang, Shuang |
IEEE/ACM transactions on computational biology and bioinformatics. |
29994005 |
2019 Jan-Feb; |
| Quantitative temporal analysis of protein dynamics in cardiac remodeling. |
McClatchy, Daniel B; Ma, Yuanhui; Liem, David A; Ng, Dominic C M; Ping, Peipei; Yates 3rd, John R |
Journal of molecular and cellular cardiology. |
30009778 |
2018 Aug; |
| CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. |
Bukhari, Syed Ahmad Chan; Martínez-Romero, Marcos; O' Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Cheung, Kei-Hoi; Kleinstein, Steven H |
BMC bioinformatics. |
30012108 |
2018 Jul 16; |
| A synthetic-diploid benchmark for accurate variant-calling evaluation. |
Li, Heng; Bloom, Jonathan M; Farjoun, Yossi; Fleharty, Mark; Gauthier, Laura; Neale, Benjamin; MacArthur, Daniel |
Nature methods. |
30013044 |
2018 Aug; |
| Neural correlates of cognitive function and symptoms in attention-deficit/hyperactivity disorder in adults. |
Duan, Kuaikuai; Chen, Jiayu; Calhoun, Vince D; Lin, Dongdong; Jiang, Wenhao; Franke, Barbara; Buitelaar, Jan K; Hoogman, Martine; Arias-Vasquez, Alejandro; Turner, Jessica A; Liu, Jingyu |
NeuroImage. Clinical. |
30013920 |
2018; |
| HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. |
Baheti, Saurabh; Tang, Xiaojia; O'Brien, Daniel R; Chia, Nicholas; Roberts, Lewis R; Nelson, Heidi; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Kocher, Jean-Pierre A; Kalari, Krishna R |
BMC bioinformatics. |
30016933 |
2018 Jul 17; |
| Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass. |
Wang, Ana Y; Thuy-Boun, Peter S; Stupp, Gregory S; Su, Andrew I; Wolan, Dennis W |
Journal of proteome research. |
30019906 |
2018 09 07; |
| Toward Increasing Engagement in Substance Use Data Collection: Development of the Substance Abuse Research Assistant App and Protocol for a Microrandomized Trial Using Adolescents and Emerging Adults. |
Rabbi, Mashfiqui; Philyaw Kotov, Meredith; Cunningham, Rebecca; Bonar, Erin E; Nahum-Shani, Inbal; Klasnja, Predrag; Walton, Maureen; Murphy, Susan |
JMIR research protocols. |
30021714 |
2018 Jul 18; |
| Comparison of privacy-protecting analytic and data-sharing methods: A simulation study. |
Yoshida, Kazuki; Gruber, Susan; Fireman, Bruce H; Toh, Sengwee |
Pharmacoepidemiology and drug safety. |
30022561 |
2018 Sep; |
| MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES. |
Zhang, Jie; Tu, Yanshuai; Li, Qingyang; Caselli, Richard J; Thompson, Paul M; Ye, Jieping; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
30023040 |
2018 Apr; |
| Statistical considerations in reporting cardiovascular research. |
Lindsey, Merry L; Gray, Gillian A; Wood, Susan K; Curran-Everett, Douglas |
American journal of physiology. Heart and circulatory physiology. |
30028200 |
2018 Aug 01; |
| Using Virtual Reality to Improve Performance and User Experience in Manual Correction of MRI Segmentation Errors by Non-experts. |
Duncan, Dominique; Garner, Rachael; Zrantchev, Ivan; Ard, Tyler; Newman, Bradley; Saslow, Adam; Wanserski, Emily; Toga, Arthur W |
Journal of digital imaging |
30030766 |
2019 02 |
| Brain cortical structural differences between non-central nervous system cancer patients treated with and without chemotherapy compared to non-cancer controls: a cross-sectional pilot MRI study using clinically-indicated scans. |
Shiroishi, Mark S; Gupta, Vikash; Bigjahan, Bavrina; Cen, Steven Y; Rashid, Faisal; Hwang, Darryl H; Lerner, Alexander; Boyko, Orest B; Liu, Chia-Shang Jason; Law, Meng; Thompson, Paul M; Jahanshad, Neda |
Proceedings of SPIE--the International Society for Optical Engineering. |
30034079 |
2017 Oct; |
| Selecting Optimal Subset to release under Differentially Private M-estimators from Hybrid Datasets. |
Wang, Meng; Ji, Zhanglong; Kim, Hyeon-Eui; Wang, Shuang; Xiong, Li; Jiang, Xiaoqian |
IEEE transactions on knowledge and data engineering. |
30034201 |
2018 Mar 01; |
| Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. |
Jang, MiHyun; Patted, Tejal; Gil, Yolanda; Garijo, Daniel; Ratnakar, Varun; Ji, Jie; Wang, Prince; McMahon, Aggie; Thompson, Paul M; Jahanshad, Neda |
CEUR workshop proceedings. |
30034319 |
2017 Oct; |
| ENIGMA MILITARY BRAIN INJURY: A COORDINATED META-ANALYSIS OF DIFFUSION MRI FROM MULTIPLE COHORTS. |
Dennis, Emily L; Wilde, Elisabeth A; Newsome, Mary R; Scheibel, Randall S; Troyanskaya, Maya; Velez, Carmen; Wade, Benjamin S C; Drennon, Ann Marie; York, Gerald E; Bigler, Erin D; Abildskov, Tracy J; Taylor, Brian A; Jaramillo, Carlos A; Eapen, Blessen; Belanger, Heather; Gupta, Vikash; Morey, Rajendra; Haswell, Courtney; Levin, Harvey S; Hinds 2nd, Sidney R; Walker, William C; Thompson, Paul M; Tate, David F |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
30034577 |
2018 Apr; |
| Learning causality and causality-related learning: some recent progress. |
Zhang, Kun; Schölkopf, Bernhard; Spirtes, Peter; Glymour, Clark |
National science review. |
30034911 |
2018 Jan; |
| Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging. |
Petrov, Dmitry; Gutman, Boris A; Yu, Shih-Hua Julie; van Erp, Theo G M; Turner, Jessica A; Schmaal, Lianne; Veltman, Dick; Wang, Lei; Alpert, Kathryn; Isaev, Dmitry; Zavaliangos-Petropulu, Artemis; Ching, Christopher R K; Calhoun, Vince; Glahn, David; Satterthwaite, Theodore D; Andreasen, Ole Andreas; Borgwardt, Stefan; Howells, Fleur; Groenewold, Nynke; Voineskos, Aristotle; Radua, Joaquim; Potkin, Steven G; Crespo-Facorro, Benedicto; Tordesillas-Gutiérrez, Diana; Shen, Li; Lebedeva, Irina; Spalletta, Gianfranco; Donohoe, Gary; Kochunov, Peter; Rosa, Pedro G P; James, Anthony; Dannlowski, Udo; Baune, Bernhard T; Aleman, André; Gotlib, Ian H; Walter, Henrik; Walter, Martin; Soares, Jair C; Ehrlich, Stefan; Gur, Ruben C; Doan, N Trung; Agartz, Ingrid; Westlye, Lars T; Harrisberger, Fabienne; Riecher-Rössler, Anita; Uhlmann, Anne; Stein, Dan J; Dickie, Erin W; Pomarol-Clotet, Edith; Fuentes-Claramonte, Paola; Canales-Rodríguez, Erick Jorge; Salvador, Raymond; Huang, Alexander J; Roiz-Santiañez, Roberto; Cong, Shan; Tomyshev, Alexander; Piras, Fabrizio; Vecchio, Daniela; Banaj, Nerisa; Ciullo, Valentina; Hong, Elliot; Busatto, Geraldo; Zanetti, Marcus V; Serpa, Mauricio H; Cervenka, Simon; Kelly, Sinead; Grotegerd, Dominik; Sacchet, Matthew D; Veer, Ilya M; Li, Meng; Wu, Mon-Ju; Irungu, Benson; Walton, Esther; Thompson, Paul M |
Machine learning in medical imaging. MLMI (Workshop). |
30035274 |
2017 Sep; |
| OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. |
Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi |
PLoS computational biology. |
30048444 |
2018 07; |
| Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling. |
Kim, Hosung; Caldairou, Benoit; Bernasconi, Andrea; Bernasconi, Neda |
Frontiers in neuroinformatics. |
30050423 |
2018; |
| Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline. |
Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Glahn, David C; Blangero, John; Fox, Peter T; Reynolds, Richard C; Cox, Robert W; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Nichols, Thomas E; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter |
Human brain mapping. |
30052318 |
2018 Dec; |
| Examination of the Neural Basis of Psychoticlike Experiences in Adolescence During Reward Processing. |
Papanastasiou, Evangelos; Mouchlianitis, Elias; Joyce, Dan W; McGuire, Philip; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Spechler, Philip; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Artiges, Eric; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Shergill, Sukhwinder; IMAGEN Consortium |
JAMA psychiatry. |
30073329 |
2018 10 01; |
| Mapping and interpreting the dynamic connectivity of the brain. |
Chang, Catie; Keilholz, Shella; Miller, Robyn; Woolrich, Mark |
NeuroImage. |
30075278 |
2018 10 15; |
| Network enhancement as a general method to denoise weighted biological networks. |
Wang, Bo; Pourshafeie, Armin; Zitnik, Marinka; Zhu, Junjie; Bustamante, Carlos D; Batzoglou, Serafim; Leskovec, Jure |
Nature communications. |
30082777 |
2018 08 06; |
| A tissue-based draft map of the murine MHC class I immunopeptidome. |
Schuster, Heiko; Shao, Wenguang; Weiss, Tobias; Pedrioli, Patrick G A; Roth, Patrick; Weller, Michael; Campbell, David S; Deutsch, Eric W; Moritz, Robert L; Planz, Oliver; Rammensee, Hans-Georg; Aebersold, Ruedi; Caron, Etienne |
Scientific data. |
30084848 |
2018 08 07; |
| Web services for data warehouses: OMOP and PCORnet on i2b2. |
Klann, Jeffrey G; Phillips, Lori C; Herrick, Christopher; Joss, Matthew A H; Wagholikar, Kavishwar B; Murphy, Shawn N |
Journal of the American Medical Informatics Association : JAMIA. |
30085008 |
2018 10 01; |
| Attention deficit hyperactivity disorder symptoms as antecedents of later psychotic outcomes in 22q11.2 deletion syndrome. |
Niarchou, Maria; Chawner, Samuel J R A; Fiksinski, Ania; Vorstman, Jacob A S; Maeder, Johanna; Schneider, Maude; Eliez, Stephan; Armando, Marco; Pontillo, Maria; Vicari, Stefano; McDonald-McGinn, Donna M; Emanuel, Beverly S; Zackai, Elaine H; Bearden, Carrie E; Shashi, Vandana; Hooper, Stephen R; Owen, Michael J; Gur, Raquel E; Wray, Naomi R; van den Bree, Marianne B M; Thapar, Anita; International 22q11.2 Deletion Syndrome Brain and Behavior Consortium |
Schizophrenia research. |
30093352 |
2019 02; |
| Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. |
Meyer, Wynn K; Jamison, Jerrica; Richter, Rebecca; Woods, Stacy E; Partha, Raghavendran; Kowalczyk, Amanda; Kronk, Charles; Chikina, Maria; Bonde, Robert K; Crocker, Daniel E; Gaspard, Joseph; Lanyon, Janet M; Marsillach, Judit; Furlong, Clement E; Clark, Nathan L |
Science (New York, N.Y.). |
30093596 |
2018 08 10; |
| Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. |
Carass, Aaron; Cuzzocreo, Jennifer L; Han, Shuo; Hernandez-Castillo, Carlos R; Rasser, Paul E; Ganz, Melanie; Beliveau, Vincent; Dolz, Jose; Ben Ayed, Ismail; Desrosiers, Christian; Thyreau, Benjamin; Romero, José E; Coupé, Pierrick; Manjón, José V; Fonov |
NeuroImage. |
30099076 |
2018 Dec; |
| Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Snyder, Michael; Baker, Mark S; Deutsch, Eric W |
Journal of proteome research. |
30099871 |
2018 Aug 23; |
| Linkage of the ACR National Mammography Database to the Network of State Cancer Registries: Proof of Concept Evaluation by the ACR National Mammography Database Committee. |
Zuley, Margarita L; Nishikawa, Robert M; Lee, Cindy S; Burnside, Elizabeth; Rosenberg, Robert; Sickles, Edward A; Berg, Wendie; Leung, Jessica; Harvey, Jennifer; Sengupta, Debapriya; Gur, David |
Journal of the American College of Radiology : JACR. |
30100161 |
2019 Jan; |
| A neurobiological pathway to smoking in adolescence: TTC12-ANKK1-DRD2 variants and reward response. |
Macare, Christine; Ducci, Francesca; Zhang, Yuning; Ruggeri, Barbara; Jia, Tianye; Kaakinen, Marika; Kalsi, Gursharan; Charoen, Pimphen; Casoni, Filippo; Peters, Jan; Bromberg, Uli; Hill, Matthew; Buxton, Jessica; Blakemore, Alexandra; Veijola, Juha; Büchel, Christian; Banaschewski, Tobias; Bokde, Arun L W; Conrod, Patricia; Flor, Herta; Frouin, Vincent; Gallinat, Jürgen; Garavan, Hugh; Gowland, Penny A; Heinz, Andreas; Ittermann, Bernd; Lathrop, Mark; Martinot, Jean-Luc; Paus, Tomá?; Desrivières, Sylvane; Munafò, Marcus; Järvelin, Marjo-Riitta; Schumann, Gunter; IMAGEN Consortium |
European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. |
30104163 |
2018 10; |
| Iterative Design of Visual Analytics for a Clinician-in-the-loop Smart Home. |
Ghods, Alireza; Caffrey, Kathleen; Lin, Beiyu; Fraga, Kylie; Fritz, Roschelle; Schmitter-Edgecombe, Maureen; Hundhausen, Christopher; Cook, Diane J |
IEEE journal of biomedical and health informatics. |
30106700 |
2018 Aug 08; |
| Distinct brain structure and behavior related to ADHD and conduct disorder traits. |
Bayard, Frida; Nymberg Thunell, Charlotte; Abé, Christoph; Almeida, Rita; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Conrod, Patricia; Stringaris, Argyris; Struve, Maren; Penttilä, Jani; Kappel, Viola; Grimmer, Yvonne; Fadai, Tahmine; van Noort, Betteke; Smolka, Michael N; Vetter, Nora C; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Petrovic, Predrag; IMAGEN Consortium |
Molecular psychiatry. |
30108313 |
2020 Nov; |
| COMT Val158Met Polymorphism and Social Impairment Interactively Affect Attention-Deficit Hyperactivity Symptoms in Healthy Adolescents. |
Millenet, Sabina K; Nees, Frauke; Heintz, Stefan; Bach, Christiane; Frank, Josef; Vollstädt-Klein, Sabine; Bokde, Arun; Bromberg, Uli; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Fröhner, Juliane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Lemaire, Herve; Martinot, Jean-Luc; Martinot, Marie-Laure P; Papadoulos, Dimitri O; Paus, Tomá?; Poustka, Luise; Rietschel, Marcella; Smolka, Michael N; Walter, Henrik; Whelan, Rob; Schumann, Gunter; Banaschewski, Tobias; Hohmann, Sarah |
Frontiers in genetics. |
30108607 |
; |
| HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS. |
Wu, Jianfeng; Zhang, Jie; Shi, Jie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
30123414 |
2018 Apr; |
| Variation graph toolkit improves read mapping by representing genetic variation in the reference. |
Garrison, Erik; Sirén, Jouni; Novak, Adam M; Hickey, Glenn; Eizenga, Jordan M; Dawson, Eric T; Jones, William; Garg, Shilpa; Markello, Charles; Lin, Michael F; Paten, Benedict; Durbin, Richard |
Nature biotechnology. |
30125266 |
2018 Oct; |
| Large Scale Semi-Automated Labeling of Routine Free-Text Clinical Records for Deep Learning. |
Trivedi, Hari M; Panahiazar, Maryam; Liang, April; Lituiev, Dmytro; Chang, Peter; Sohn, Jae Ho; Chen, Yunn-Yi; Franc, Benjamin L; Joe, Bonnie; Hadley, Dexter |
Journal of digital imaging. |
30128778 |
2019 Feb; |
| Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative. |
Halilaj, E; Le, Y; Hicks, J L; Hastie, T J; Delp, S L |
Osteoarthritis and cartilage. |
30130590 |
; |
| LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling. |
DeLeon-Pennell, Kristine Y; Mouton, Alan J; Ero, Osasere K; Ma, Yonggang; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; Espinoza, Ingrid; Musani, Solomon K; Vasan, Ramachandran S; Hall, Michael E; Fox, Ervin R; Lindsey, Merry L |
Basic research in cardiology. |
30132266 |
2018 08 21; |
| Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study. |
Can, Anil; Rudy, Robert F; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Neurology |
30135253 |
2018 09 18 |
| EarBit: Using Wearable Sensors to Detect Eating Episodes in Unconstrained Environments. |
Bedri, Abdelkareem; Li, Richard; Haynes, Malcolm; Kosaraju, Raj Prateek; Grover, Ishaan; Prioleau, Temiloluwa; Beh, Min Yan; Goel, Mayank; Starner, Thad; Abowd, Gregory |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. |
30135957 |
2017 Sep; |
| Scoring Bayesian Networks of Mixed Variables. |
Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F |
International journal of data science and analytics. |
30140730 |
2018 Aug; |
| Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy. |
NULL |
Journal of proteome research. |
30141336 |
2018 Aug 31; |
| HiGlass: web-based visual exploration and analysis of genome interaction maps. |
Kerpedjiev, Peter; Abdennur, Nezar; Lekschas, Fritz; McCallum, Chuck; Dinkla, Kasper; Strobelt, Hendrik; Luber, Jacob M; Ouellette, Scott B; Azhir, Alaleh; Kumar, Nikhil; Hwang, Jeewon; Lee, Soohyun; Alver, Burak H; Pfister, Hanspeter; Mirny, Leonid A; Pa |
Genome biology. |
30143029 |
2018 08 24; |
| Comparison of strategies for scalable causal discovery of latent variable models from mixed data. |
Raghu, Vineet K; Ramsey, Joseph D; Morris, Alison; Manatakis, Dimitrios V; Sprites, Peter; Chrysanthis, Panos K; Glymour, Clark; Benos, Panayiotis V |
International journal of data science and analytics. |
30148202 |
2018; |
| Extracellular matrix roles in cardiorenal fibrosis: Potential therapeutic targets for CVD and CKD in the elderly. |
Toba, Hiroe; Lindsey, Merry L |
Pharmacology & therapeutics. |
30149103 |
2018 Aug 25; |
| Smaller subcortical volume in Parkinson patients with rapid eye movement sleep behavior disorder. |
Kamps, Sanne; van den Heuvel, Odile A; van der Werf, Ysbrand D; Berendse, Henk W; Weintraub, Daniel; Vriend, Chris |
Brain imaging and behavior. |
30155787 |
2019 Oct; |
| Controlled feature selection and compressive big data analytics: Applications to biomedical and health studies. |
Marino, Simeone; Xu, Jiachen; Zhao, Yi; Zhou, Nina; Zhou, Yiwang; Dinov, Ivo D |
PloS one. |
30161148 |
2018; |
| The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. |
Bukhari, Syed Ahmad Chan; O'Connor, Martin J; Martínez-Romero, Marcos; Egyedi, Attila L; Willrett, Debra; Graybeal, John; Musen, Mark A; Rubelt, Florian; Cheung, Kei-Hoi; Kleinstein, Steven H |
Frontiers in immunology. |
30166985 |
2018; |
| Maturation of the Human Cerebral Cortex During Adolescence: Myelin or Dendritic Arbor? |
Patel, Y; Shin, J; Gowland, P A; Pausova, Z; Paus, T; IMAGEN consortium |
Cerebral cortex (New York, N.Y. : 1991). |
30169567 |
2019 07 22; |
| Exogenous CXCL4 Infusion Inhibits Macrophage Phagocytosis by Limiting CD36 Signaling to Enhance Post-myocardial Infarction Cardiac Dilation and Mortality. |
Lindsey, Merry L; Jung, Mira; Yabluchanskiy, Andriy; Cannon, Presley L; Padmanabhan Iyer, Rugmani; Flynn, Elizabeth R; DeLeon-Pennell, Kristine Y; Valerio, Fritz M; Harrison, Courtney L; Ripplinger, Crystal M; Hall, Michael E; Ma, Yonggang |
Cardiovascular research. |
30169632 |
2018 Aug 29; |
| Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures. |
Wang, Zichen; He, Edward; Sani, Kevin; Jagodnik, Kathleen M; Silverstein, Moshe C; Ma'ayan, Avi |
Bioinformatics (Oxford, England). |
30169739 |
2019 Apr 01; |
| Using structural MRI to identify bipolar disorders - 13 site machine learning study in 3020 individuals from the ENIGMA Bipolar Disorders Working Group. |
Nunes, Abraham; Schnack, Hugo G; Ching, Christopher R K; Agartz, Ingrid; Akudjedu, Theophilus N; Alda, Martin; Alnæs, Dag; Alonso-Lana, Silvia; Bauer, Jochen; Baune, Bernhard T; Bøen, Erlend; Bonnin, Caterina Del Mar; Busatto, Geraldo F; Canales-Rodríguez, Erick J; Cannon, Dara M; Caseras, Xavier; Chaim-Avancini, Tiffany M; Dannlowski, Udo; Díaz-Zuluaga, Ana M; Dietsche, Bruno; Doan, Nhat Trung; Duchesnay, Edouard; Elvsåshagen, Torbjørn; Emden, Daniel; Eyler, Lisa T; Fatjó-Vilas, Mar; Favre, Pauline; Foley, Sonya F; Fullerton, Janice M; Glahn, David C; Goikolea, Jose M; Grotegerd, Dominik; Hahn, Tim; Henry, Chantal; Hibar, Derrek P; Houenou, Josselin; Howells, Fleur M; Jahanshad, Neda; Kaufmann, Tobias; Kenney, Joanne; Kircher, Tilo T J; Krug, Axel; Lagerberg, Trine V; Lenroot, Rhoshel K; López-Jaramillo, Carlos; Machado-Vieira, Rodrigo; Malt, Ulrik F; McDonald, Colm; Mitchell, Philip B; Mwangi, Benson; Nabulsi, Leila; Opel, Nils; Overs, Bronwyn J; Pineda-Zapata, Julian A; Pomarol-Clotet, Edith; Redlich, Ronny; Roberts, Gloria; Rosa, Pedro G; Salvador, Raymond; Satterthwaite, Theodore D; Soares, Jair C; Stein, Dan J; Temmingh, Henk S; Trappenberg, Thomas; Uhlmann, Anne; van Haren, Neeltje E M; Vieta, Eduard; Westlye, Lars T; Wolf, Daniel H; Yüksel, Dilara; Zanetti, Marcus V; Andreassen, Ole A; Thompson, Paul M; Hajek, Tomas; ENIGMA Bipolar Disorders Working Group |
Molecular psychiatry. |
30171211 |
2020 Sep; |
| The conserved protective cyclic AMP-phosphodiesterase function PDE4B is expressed in the adenoma and adjacent normal colonic epithelium of mammals and silenced in colorectal cancer. |
Pleiman, Jennifer K; Irving, Amy A; Wang, Zhishi; Toraason, Erik; Clipson, Linda; Dove, William F; Deming, Dustin A; Newton, Michael A |
PLoS genetics. |
30188895 |
2018 09; |
| Cross-tissue eQTL enrichment of associations in schizophrenia. |
Bettella, Francesco; Brown, Andrew A; Smeland, Olav B; Wang, Yunpeng; Witoelar, Aree; Buil Demur, Alfonso A; Thompson, Wesley K; Zuber, Verena; Dale, Anders M; Djurovic, Srdjan; Andreassen, Ole A |
PloS one |
30188921 |
2018 |
| Generalized Score Functions for Causal Discovery. |
Huang, Biwei; Zhang, Kun; Lin, Yizhu; Schölkopf, Bernhard; Glymour, Clark |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
30191079 |
2018 Aug; |
| A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol. |
Adhikari, Bhim M; Jahanshad, Neda; Shukla, Dinesh; Turner, Jessica; Grotegerd, Dominik; Dannlowski, Udo; Kugel, Harald; Engelen, Jennifer; Dietsche, Bruno; Krug, Axel; Kircher, Tilo; Fieremans, Els; Veraart, Jelle; Novikov, Dmitry S; Boedhoe, Premika S W; van der Werf, Ysbrand D; van den Heuvel, Odile A; Ipser, Jonathan; Uhlmann, Anne; Stein, Dan J; Dickie, Erin; Voineskos, Aristotle N; Malhotra, Anil K; Pizzagalli, Fabrizio; Calhoun, Vince D; Waller, Lea; Veer, Ilja M; Walter, Hernik; Buchanan, Robert W; Glahn, David C; Hong, L Elliot; Thompson, Paul M; Kochunov, Peter |
Brain imaging and behavior. |
30191514 |
; |
| Mixed Graphical Models for Integrative Causal Analysis with Application to Chronic Lung Disease Diagnosis and Prognosis. |
Sedgewick, Andrew J; Buschur, Kristina; Shi, Ivy; Ramsey, Joseph D; Raghu, Vineet K; Manatakis, Dimitris V; Zhang, Yingze; Bon, Jessica; Chandra, Divay; Karoleski, Chad; Sciurba, Frank C; Spirtes, Peter; Glymour, Clark; Benos, Panayiotis V |
Bioinformatics (Oxford, England). |
30192904 |
2018 Sep 05; |
| Efficacy of Contextually Tailored Suggestions for Physical Activity: A Micro-randomized Optimization Trial of HeartSteps. |
Klasnja, Predrag; Smith, Shawna; Seewald, Nicholas J; Lee, Andy; Hall, Kelly; Luers, Brook; Hekler, Eric B; Murphy, Susan A |
Annals of behavioral medicine : a publication of the Society of Behavioral Medicine. |
30192907 |
2018 Sep 05; |
| The ventromedial prefrontal cortex: a putative locus for trait inattention. |
Albaugh, Matthew D; Potter, Alexandra S |
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. |
30194422 |
2019 Jan; |
| Motor neuron loss and neuroinflammation in a model of ?-synuclein-induced neurodegeneration. |
Sorrentino, Zachary A; Xia, Yuxing; Funk, Cory; Riffe, Cara J; Rutherford, Nicola J; Ceballos Diaz, Carolina; Sacino, Amanda N; Price, Nathan D; Golde, Todd E; Giasson, Benoit I; Chakrabarty, Paramita |
Neurobiology of disease. |
30195075 |
2018 Dec; |
| Collaborative Problem Solving in an Open-Ended Scientific Discovery Game. |
Bauer, Aaron; Popovi?, Zoran |
Proceedings of the ACM on human-computer interaction. |
30198019 |
2017 Nov; |
| SequencEnG: an Interactive Knowledge Base of Sequencing Techniques. |
Zhang, Yi; Manjunath, Mohith; Kim, Yeonsung; Heintz, Joerg; Song, Jun S |
Bioinformatics (Oxford, England). |
30202870 |
2018 Sep 08; |
| A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways. |
Lu, Songjian; Fan, Xiaonan; Chen, Lujia; Lu, Xinghua |
PloS one. |
30208101 |
2018; |
| 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification. |
Kalinin, Alexandr A; Allyn-Feuer, Ari; Ade, Alex; Fon, Gordon-Victor; Meixner, Walter; Dilworth, David; Husain, Syed S; de Wett, Jeffrey R; Higgins, Gerald A; Zheng, Gen; Creekmore, Amy; Wiley, John W; Verdone, James E; Veltri, Robert W; Pienta, Kenneth J; Coffey, Donald S; Athey, Brian D; Dinov, Ivo D |
Scientific reports. |
30209281 |
; |
| Investigating inequities in hospital care among lesbian, gay, bisexual, and transgender (LGBT) individuals using social media. |
Hswen, Yulin; Sewalk, Kara C; Alsentzer, Emily; Tuli, Gaurav; Brownstein, John S; Hawkins, Jared B |
Social science & medicine (1982). |
30219749 |
2018 10; |
| PReP: Path-Based Relevance from a Probabilistic Perspective in Heterogeneous Information Networks. |
Shi, Yu; Chan, Po-Wei; Zhuang, Honglei; Gui, Huan; Han, Jiawei |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
30221026 |
2017 Aug; |
| AspEm: Embedding Learning by Aspects in Heterogeneous Information Networks. |
Shi, Yu; Gui, Huan; Zhu, Qi; Kaplan, Lance; Han, Jiawei |
Proceedings of the ... SIAM International Conference on Data Mining. SIAM International Conference on Data Mining. |
30221081 |
2018; |
| Flexible and Fast Mapping of Peptides to a Proteome with ProteoMapper. |
Mendoza, Luis; Deutsch, Eric W; Sun, Zhi; Campbell, David S; Shteynberg, David D; Moritz, Robert L |
Journal of proteome research. |
30230343 |
2018 Sep 28; |
| Symptom dimensions in obsessive-compulsive disorder as predictors of neurobiology and treatment response. |
Thorsen, Anders Lillevik; Kvale, Gerd; Hansen, Bjarne; van den Heuvel, Odile A |
Current treatment options in psychiatry. |
30237966 |
2018 Mar; |
| Extracellular Matrix in Cardiovascular Pathophysiology. |
Bloksgaard, Maria; Lindsey, Merry L; Martinez-Lemus, Luis A |
American journal of physiology. Heart and circulatory physiology. |
30239231 |
2018 Sep 21; |
| Mapping adolescent reward anticipation, receipt, and prediction error during the monetary incentive delay task. |
Cao, Zhipeng; Bennett, Marc; Orr, Catherine; Icke, Ilknur; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Schumann, Gunter; Whelan, Robert; IMAGEN Consortium |
Human brain mapping. |
30240509 |
2019 01; |
| All-night functional magnetic resonance imaging sleep studies. |
Moehlman, Thomas M; de Zwart, Jacco A; Chappel-Farley, Miranda G; Liu, Xiao; McClain, Irene B; Chang, Catie; Mandelkow, Hendrik; Özbay, Pinar S; Johnson, Nicholas L; Bieber, Rebecca E; Fernandez, Katharine A; King, Kelly A; Zalewski, Christopher K; Brewer, Carmen C; van Gelderen, Peter; Duyn, Jeff H; Picchioni, Dante |
Journal of neuroscience methods. |
30243817 |
2019 Mar 15; |
| Associations Between Positron Emission Tomography Amyloid Pathology and Diffusion Tensor Imaging Brain Connectivity in Pre-Clinical Alzheimer's Disease. |
Hwang, Seong Jae; Adluru, Nagesh; Kim, Won Hwa; Johnson, Sterling C; Bendlin, Barbara B; Singh, Vikas |
Brain connectivity. |
30255713 |
2019 03; |
| Smaller hippocampal CA1 subfield volume in posttraumatic stress disorder. |
Chen, Lyon W; Sun, Delin; Davis, Sarah L; Haswell, Courtney C; Dennis, Emily L; Swanson, Chelsea A; Whelan, Christopher D; Gutman, Boris; Jahanshad, Neda; Iglesias, Juan Eugenio; Thompson, Paul; Mid-Atlantic MIRECC Workgroup; Wagner, H Ryan; Saemann, Phil |
Depression and anxiety. |
30256497 |
2018 Nov; |
| Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data. |
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Cell reports. |
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| Genetic risk for schizophrenia and autism, social impairment and developmental pathways to psychosis. |
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Translational psychiatry. |
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| Wearables and the medical revolution. |
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Personalized medicine. |
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2018 09; |
| Structure and Protein Interaction-based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17. |
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Journal of proteome research. |
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| Expanding the use of spectral libraries in proteomics. |
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Journal of proteome research. |
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| Randomization-Based Statistical Inference: A Resampling and Simulation Infrastructure. |
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Teaching statistics. |
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Journal of computational biology : a journal of computational molecular cell biology. |
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| Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. |
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Nature genetics |
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2018 Nov |
| Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities. |
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Journal of biomechanics. |
30279002 |
2018 Sep 13; |
| Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia. |
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ACS omega. |
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| mCerebrum: A Mobile Sensing Software Platform for Development and Validation of Digital Biomarkers and Interventions. |
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Proceedings of the ... International Conference on Embedded Networked Sensor Systems. International Conference on Embedded Networked Sensor Systems. |
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Pharmacogenetics and genomics. |
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| Framing the challenges of artificial intelligence in medicine. |
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Journal of visualized experiments : JoVE. |
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JAMA psychiatry. |
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BMC medical genomics. |
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The American journal of psychiatry. |
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| atSNPInfrastructure, a case study for searching billions of records while providing significant cost savings over cloud providers. |
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Stroke. |
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| Feasibility and Acceptability of Mobile Phone-Based Auto-Personalized Physical Activity Recommendations for Chronic Pain Self-Management: Pilot Study on Adults. |
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eLife |
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Journal of chemical information and modeling. |
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Annual review of animal biosciences. |
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Pharmacological research. |
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Nucleic acids research. |
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| Estimating the effect size of surgery to improve walking in children with cerebral palsy from retrospective observational clinical data. |
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Scientific reports. |
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Radiology. |
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| Understanding the Hidden Complexity of Latin American Population Isolates. |
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American journal of human genetics. |
30401458 |
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Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. |
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Nursing inquiry. |
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| Elevated allostatic load early in the course of schizophrenia. |
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Translational psychiatry. |
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| Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease. |
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Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. |
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| A Fast Method for Estimating Statistical Power of Multivariate GWAS in Real Case Scenarios: Examples from the Field of Imaging Genetics. |
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Behavior genetics |
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| BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud. |
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Cell systems. |
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| Mutations of the mitochondrial carrier translocase channel subunit TIM22 cause early-onset mitochondrial myopathy. |
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Human molecular genetics. |
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Scientific data. |
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| Model-Based and Model-Free Techniques for Amyotrophic Lateral Sclerosis Diagnostic Prediction and Patient Clustering. |
Tang, Ming; Gao, Chao; Goutman, Stephen A; Kalinin, Alexandr; Mukherjee, Bhramar; Guan, Yuanfang; Dinov, Ivo D |
Neuroinformatics. |
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| Yum-Me: A Personalized Nutrient-Based Meal Recommender System. |
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FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. |
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| Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers. |
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Journal of digital imaging. |
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| Assessing Time-Varying Causal Effect Moderation in Mobile Health. |
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Journal of the American Statistical Association. |
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| EDGE EXCHANGEABLE MODELS FOR INTERACTION NETWORKS. |
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Journal of the American Statistical Association. |
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| Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder. |
Athreya, Arjun; Iyer, Ravishankar; Neavin, Drew; Wang, Liewei; Weinshilboum, Richard; Kaddurah-Daouk, Rima; Rush, John; Frye, Mark; Bobo, William |
IEEE computational intelligence magazine. |
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| Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities. |
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An international journal on information fusion. |
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| Reply to: New Meta- and Mega-analyses of Magnetic Resonance Imaging Findings in Schizophrenia: Do They Really Increase Our Knowledge About the Nature of the Disease Process? |
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Biological psychiatry. |
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| Protein Inference Using PIA Workflows and PSI Standard File Formats. |
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Journal of proteome research. |
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2019 02 01; |
| Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. |
Köhler, Sebastian; Carmody, Leigh; Vasilevsky, Nicole; Jacobsen, Julius O B; Danis, Daniel; Gourdine, Jean-Philippe; Gargano, Michael; Harris, Nomi L; Matentzoglu, Nicolas; McMurry, Julie A; Osumi-Sutherland, David; Cipriani, Valentina; Balhoff, James P; Conlin, Tom; Blau, Hannah; Baynam, Gareth; Palmer, Richard; Gratian, Dylan; Dawkins, Hugh; Segal, Michael; Jansen, Anna C; Muaz, Ahmed; Chang, Willie H; Bergerson, Jenna; Laulederkind, Stanley J F; Yüksel, Zafer; Beltran, Sergi; Freeman, Alexandra F; Sergouniotis, Panagiotis I; Durkin, Daniel; Storm, Andrea L; Hanauer, Marc; Brudno, Michael; Bello, Susan M; Sincan, Murat; Rageth, Kayli; Wheeler, Matthew T; Oegema, Renske; Lourghi, Halima; Della Rocca, Maria G; Thompson, Rachel; Castellanos, Francisco; Priest, James; Cunningham-Rundles, Charlotte; Hegde, Ayushi; Lovering, Ruth C; Hajek, Catherine; Olry, Annie; Notarangelo, Luigi; Similuk, Morgan; Zhang, Xingmin A; Gómez-Andrés, David; Lochmüller, Hanns; Dollfus, Hélène; Rosenzweig, Sergio; Marwaha, Shruti; Rath, Ana; Sullivan, Kathleen; Smith, Cynthia; Milner, Joshua D; Leroux, Dorothée; Boerkoel, Cornelius F; Klion, Amy; Carter, Melody C; Groza, Tudor; Smedley, Damian; Haendel, Melissa A; Mungall, Chris; Robinson, Peter N |
Nucleic acids research. |
30476213 |
2019 Jan 08; |
| Dissociable Disruptions in Thalamic and Hippocampal Resting-State Functional Connectivity in Youth with 22q11.2 Deletions. |
Schleifer, Charles; Lin, Amy; Kushan, Leila; Ji, Jie Lisa; Yang, Genevieve; Bearden, Carrie E; Anticevic, Alan |
The Journal of neuroscience : the official journal of the Society for Neuroscience. |
30478034 |
2019 Feb 13; |
| A primer on deep learning in genomics. |
Zou, James; Huss, Mikael; Abid, Abubakar; Mohammadi, Pejman; Torkamani, Ali; Telenti, Amalio |
Nature genetics |
30478442 |
2019 01 |
| High-frequency actionable pathogenic exome variants in an average-risk cohort. |
Rego, Shannon; Dagan-Rosenfeld, Orit; Zhou, Wenyu; Sailani, M Reza; Limcaoco, Patricia; Colbert, Elizabeth; Avina, Monika; Wheeler, Jessica; Craig, Colleen; Salins, Denis; Röst, Hannes L; Dunn, Jessilyn; McLaughlin, Tracey; Steinmetz, Lars M; Bernstein, Jonathan A; Snyder, Michael P |
Cold Spring Harbor molecular case studies. |
30487145 |
2018 12; |
| Genomic kinship construction to enhance genetic analyses in the human connectome project data. |
Kochunov, Peter; Donohue, Brian; Mitchell, Braxton D; Ganjgahi, Habib; Adhikari, Bhim; Ryan, Meghann; Medland, Sarah E; Jahanshad, Neda; Thompson, Paul M; Blangero, John; Fieremans, Els; Novikov, Dmitry S; Marcus, Daniel; Van Essen, David C; Glahn, David |
Human brain mapping. |
30496643 |
2019 Apr 01; |
| Practical Model Selection for Prospective Virtual Screening. |
Liu, Shengchao; Alnammi, Moayad; Ericksen, Spencer S; Voter, Andrew F; Ananiev, Gene E; Keck, James L; Hoffmann, F Michael; Wildman, Scott A; Gitter, Anthony |
Journal of chemical information and modeling. |
30500183 |
2019 Jan 28; |
| The Role of the Aryl Hydrocarbon Receptor (AHR) in Immune and Inflammatory Diseases. |
Neavin, Drew R; Liu, Duan; Ray, Balmiki; Weinshilboum, Richard M |
International journal of molecular sciences. |
30513921 |
2018 Dec 03; |
| Exploration of Shared Genetic Architecture Between Subcortical Brain Volumes and Anorexia Nervosa. |
Walton, E; Hibar, D; Yilmaz, Z; Jahanshad, N; Cheung, J; Batury, V-L; Seitz, J; Bulik, C M; PGC-ED; ENIGMA Genetics Working Group; Thompson, P M; Ehrlich, Stefan |
Molecular neurobiology |
30519816 |
2019 Jul |
| A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry. |
Swearingen, Kristian E; Eng, Jimmy K; Shteynberg, David; Vigdorovich, Vladimir; Springer, Timothy A; Mendoza, Luis; Sather, D Noah; Deutsch, Eric W; Kappe, Stefan H I; Moritz, Robert L |
Journal of proteome research. |
30523691 |
2019 Feb 01; |
| Collaboration Matters: Honey Bee Health as a Transdisciplinary Model for Understanding Real-World Complexity. |
Suryanarayanan, Sainath; Kleinman, Daniel Lee; Gratton, Claudio; Toth, Amy; Guedot, Christelle; Groves, Russell; Piechowski, John; Moore, Brad; Hagedorn, Deborah; Kauth, Dayton; Swan, Heather; Celley, Mary |
Bioscience. |
30524133 |
2018 Dec 01; |
| Allele-Specific Methylation of SPDEF: A Novel Moderator of Psychosocial Stress and Substance Abuse. |
Tay, Nicole; Macare, Christine; Liu, Yun; Ruggeri, Barbara; Jia, Tianye; Chu, Congying; Biondo, Francesca; Ing, Alex; Luo, Qiang; Sarkysian, Daniil; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Artiges, Eric; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Frieling, Helge; Bleich, Stefan; Barker, Edward D; Syvänen, Ann-Christine; Rüegg, Joëlle; Ekström, Tomas J; Bakalkin, Georgy; Schumann, Gunter; IMAGEN Consortium |
The American journal of psychiatry. |
30525907 |
2019 02 01; |
| GOnet: a tool for interactive Gene Ontology analysis. |
Pomaznoy, Mikhail; Ha, Brendan; Peters, Bjoern |
BMC bioinformatics |
30526489 |
2018 Dec 07 |
| Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma. |
Hong, Na; Zhang, Ning; Wu, Huawei; Lu, Shanshan; Yu, Yue; Hou, Li; Lu, Yinying; Liu, Hongfang; Jiang, Guoqian |
BMC medical informatics and decision making. |
30526572 |
2018 12 07; |
| Unveiling the Role of the Most Impactful Cardiovascular Risk Locus through Haplotype Editing. |
Lo Sardo, Valentina; Chubukov, Pavel; Ferguson, William; Kumar, Aditya; Teng, Evan L; Duran, Michael; Zhang, Lei; Cost, Gregory; Engler, Adam J; Urnov, Fyodor; Topol, Eric J; Torkamani, Ali; Baldwin, Kristin K |
Cell. |
30528432 |
2018 Dec 13; |
| Genetic analysis of neurodegenerative diseases in a pathology cohort. |
Blauwendraat, Cornelis; Pletnikova, Olga; Geiger, Joshua T; Murphy, Natalie A; Abramzon, Yevgeniya; Rudow, Gay; Mamais, Adamantios; Sabir, Marya S; Crain, Barbara; Ahmed, Sarah; Rosenthal, Liana S; Bakker, Catherine C; Faghri, Faraz; Chia, Ruth; Ding, Jin |
Neurobiology of aging. |
30528841 |
2019 Apr; |
| atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding. |
Shin, Sunyoung; Hudson, Rebecca; Harrison, Christopher; Craven, Mark; Kele?, Sündüz |
Bioinformatics (Oxford, England). |
30534948 |
2019 08 01; |
| Validity of Privacy-Protecting Analytical Methods That Use Only Aggregate-Level Information to Conduct Multivariable-Adjusted Analysis in Distributed Data Networks. |
Li, Xiaojuan; Fireman, Bruce H; Curtis, Jeffrey R; Arterburn, David E; Fisher, David P; Moyneur, Érick; Gallagher, Mia; Raebel, Marsha A; Nowell, W Benjamin; Lagreid, Lindsay; Toh, Sengwee |
American journal of epidemiology. |
30535131 |
2019 Apr 01; |
| Age-Related Differences in Brain Morphology and the Modifiers in Middle-Aged and Older Adults. |
Zhao, Lu; Matloff, William; Ning, Kaida; Kim, Hosung; Dinov, Ivo D; Toga, Arthur W |
Cerebral cortex (New York, N.Y. : 1991). |
30535294 |
2019 09 13; |
| Peer victimization and its impact on adolescent brain development and psychopathology. |
Quinlan, Erin Burke; Barker, Edward D; Luo, Qiang; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Chaarani, Bader; Gowland, Penny; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium |
Molecular psychiatry. |
30542059 |
2020 11; |
| Monitoring Online Discussions About Suicide Among Twitter Users With Schizophrenia: Exploratory Study. |
Hswen, Yulin; Naslund, John A; Brownstein, John S; Hawkins, Jared B |
JMIR mental health. |
30545811 |
2018 Dec 13; |
| ADAPTIVE GRADIENT DESCENT OPTIMIZATION OF INITIAL MOMENTA FOR GEODESIC SHOOTING IN DIFFEOMORPHISMS. |
Fleishman, Greg M; Thompson, Paul M |
Proceedings. IEEE International Symposium on Biomedical Imaging. |
30546823 |
2017 Apr; |
| A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization. |
Kuang, Zhaobin; Bao, Yujia; Thomson, James; Caldwell, Michael; Peissig, Peggy; Stewart, Ron; Willett, Rebecca; Page, David |
Methods in molecular biology (Clifton, N.J.). |
30547447 |
2019; |
| A nurse-driven method for developing artificial intelligence in ''smart'' homes for aging-in-place. |
Fritz, Roschelle L; Dermody, Gordana |
Nursing outlook. |
30551883 |
2018 Nov 23; |
| Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. |
Gunz, Philipp; Tilot, Amanda K; Wittfeld, Katharina; Teumer, Alexander; Shapland, Chin Yang; van Erp, Theo G M; Dannemann, Michael; Vernot, Benjamin; Neubauer, Simon; Guadalupe, Tulio; Fernández, Guillén; Brunner, Han G; Enard, Wolfgang; Fallon, James; Hosten, Norbert; Völker, Uwe; Profico, Antonio; Di Vincenzo, Fabio; Manzi, Giorgio; Kelso, Janet; St Pourcain, Beate; Hublin, Jean-Jacques; Franke, Barbara; Pääbo, Svante; Macciardi, Fabio; Grabe, Hans J; Fisher, Simon E |
Current biology : CB. |
30554901 |
2019 Jan 07; |
| Stochastic Learning for Sparse Discrete Markov Random Fields with Controlled Gradient Approximation Error. |
Geng, Sinong; Kuang, Zhaobin; Liu, Jie; Wright, Stephen; Page, David |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
30555282 |
2018 Aug; |
| Uncovering Biologically Coherent Peripheral Signatures of Health and Risk for Alzheimer's Disease in the Aging Brain. |
Riedel, Brandalyn C; Daianu, Madelaine; Ver Steeg, Greg; Mezher, Adam; Salminen, Lauren E; Galstyan, Aram; Thompson, Paul M; Alzheimer?s Disease Neuroimaging Initiative |
Frontiers in aging neuroscience. |
30555318 |
2018; |
| Exchangeable Markov survival processes and weak continuity of predictive distributions. |
Dempsey, Walter; McCullagh, Peter |
Electronic journal of statistics. |
30555616 |
2017; |
| Using machine learning to identify health outcomes from electronic health record data. |
Wong, Jenna; Horwitz, Mara Murray; Zhou, Li; Toh, Sengwee |
Current epidemiology reports. |
30555773 |
2018 Dec; |
| BMI-related cortical morphometry changes are associated with altered white matter structure. |
Medic, Nenad; Kochunov, Peter; Ziauddeen, Hisham; Ersche, Karen D; Nathan, Pradeep J; Ronan, Lisa; Fletcher, Paul C |
International journal of obesity (2005). |
30568264 |
2019 03; |
| A concise and persistent feature to study brain resting-state network dynamics: Findings from the Alzheimer's Disease Neuroimaging Initiative. |
Kuang, Liqun; Han, Xie; Chen, Kewei; Caselli, Richard J; Reiman, Eric M; Wang, Yalin; Alzheimer's Disease Neuroimaging Initiative |
Human brain mapping. |
30569583 |
2019 Mar; |
| Pharmacokinetic-Pharmacodynamic interaction associated with venlafaxine-XR remission in patients with major depressive disorder with history of citalopram / escitalopram treatment failure. |
Ahmed, Ahmed T; Biernacka, Joanna M; Jenkins, Gregory; Rush, A John; Shinozaki, Gen; Veldic, Marin; Kung, Simon; Bobo, William V; Hall-Flavin, Daniel K; Weinshilboum, Richard M; Wang, Liewei; Frye, Mark A |
Journal of affective disorders. |
30578947 |
2019 03 01; |
| BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2. |
Cline, Melissa S; Liao, Rachel G; Parsons, Michael T; Paten, Benedict; Alquaddoomi, Faisal; Antoniou, Antonis; Baxter, Samantha; Brody, Larry; Cook-Deegan, Robert; Coffin, Amy; Couch, Fergus J; Craft, Brian; Currie, Robert; Dlott, Chloe C; Dolman, Lena; den Dunnen, Johan T; Dyke, Stephanie O M; Domchek, Susan M; Easton, Douglas; Fischmann, Zachary; Foulkes, William D; Garber, Judy; Goldgar, David; Goldman, Mary J; Goodhand, Peter; Harrison, Steven; Haussler, David; Kato, Kazuto; Knoppers, Bartha; Markello, Charles; Nussbaum, Robert; Offit, Kenneth; Plon, Sharon E; Rashbass, Jem; Rehm, Heidi L; Robson, Mark; Rubinstein, Wendy S; Stoppa-Lyonnet, Dominique; Tavtigian, Sean; Thorogood, Adrian; Zhang, Can; Zimmermann, Marc; BRCA Challenge Authors; Burn, John; Chanock, Stephen; Rätsch, Gunnar; Spurdle, Amanda B |
PLoS genetics. |
30586411 |
2018 12; |
| Maximizing the promise of citizen science to advance health and prevent disease. |
King, Abby C; Winter, Sandra J; Chrisinger, Benjamin W; Hua, Jenna; Banchoff, Ann W |
Preventive medicine. |
30593793 |
2019 Feb; |
| Mining data and metadata from the gene expression omnibus. |
Wang, Zichen; Lachmann, Alexander; Ma'ayan, Avi |
Biophysical reviews. |
30594974 |
2019 Feb; |
| Potential corner case cautions regarding publicly available implementations of the National Cancer Institute's nonwear/wear classification algorithm for accelerometer data. |
Moore 4th, Hyatt E; Haydel, K Farish; Banda, Jorge A; Fiterau, Madalina; Desai, Manisha; Robinson, Thomas N |
PloS one. |
30596771 |
2018; |
| Discovering functional impacts of miRNAs in cancers using a causal deep learning model. |
Chen, Lujia; Lu, Xinghua |
BMC medical genomics. |
30598118 |
2018 Dec 31; |
| Using High-Resolution Variant Frequencies Empowers Clinical Genome Interpretation and Enables Investigation of Genetic Architecture. |
Whiffin, Nicola; Roberts, Angharad M; Minikel, Eric; Zappala, Zach; Walsh, Roddy; O'Donnell-Luria, Anne H; Karczewski, Konrad J; Harrison, Steven M; Thomson, Kate L; Sage, Helen; Ing, Alexander Y; Barton, Paul J R; Funke, Birgit; Cook, Stuart A; MacArthur, Daniel G; Ware, James S |
American journal of human genetics. |
30609406 |
2019 01 03; |
| Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality. |
Soler Artigas, María; Sánchez-Mora, Cristina; Rovira, Paula; Richarte, Vanesa; Garcia-Martínez, Iris; Pagerols, Mireia; Demontis, Ditte; Stringer, Sven; ADHD Group of the Psychiatric Genomics Consortium, International Cannabis Consortium; Vink, Jacqueline M; Børglum, Anders D; Neale, Benjamin M; Franke, Barbara; Faraone, Stephen V; Casas, Miguel; Ramos-Quiroga, Josep Antoni; Ribasés, Marta |
Molecular psychiatry. |
30610198 |
2020 Oct; |
| A Monte Carlo Approach to Skill-Based Automated Playtesting. |
Horn, Britton; Miller, Josh Aaron; Smith, Gillian; Cooper, Seth |
Proceedings. AAAI Artificial Intelligence and Interactive Digital Entertainment Conference. |
30613687 |
2018 Nov; |
| Notch signaling activation induces cell death in MAPKi-resistant melanoma cells. |
Mikheil, Dareen M; Prabhakar, Kirthana; Arshad, Ayyan; Rodriguez, Carlos I; Newton, Michael A; Setaluri, Vijayasaradhi |
Pigment cell & melanoma research. |
30614626 |
2019 Jan 07; |
| Decreased brain connectivity in smoking contrasts with increased connectivity in drinking. |
Cheng, Wei; Rolls, Edmund T; Robbins, Trevor W; Gong, Weikang; Liu, Zhaowen; Lv, Wujun; Du, Jingnan; Wen, Hongkai; Ma, Liang; Quinlan, Erin Burke; Garavan, Hugh; Artiges, Eric; Papadopoulos Orfanos, Dimitri; Smolka, Michael N; Schumann, Gunter; Kendrick, Keith; Feng, Jianfeng |
eLife. |
30616717 |
2019 Jan 08; |
| Analytic Tools for Post-traumatic Epileptogenesis Biomarker Search in Multimodal Dataset of an Animal Model and Human Patients. |
Duncan, Dominique; Barisano, Giuseppe; Cabeen, Ryan; Sepehrband, Farshid; Garner, Rachael; Braimah, Adebayo; Vespa, Paul; Pitkänen, Asla; Law, Meng; Toga, Arthur W |
Frontiers in neuroinformatics. |
30618695 |
2018; |
| Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes. |
Hejblum, Boris P; Weber, Griffin M; Liao, Katherine P; Palmer, Nathan P; Churchill, Susanne; Shadick, Nancy A; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi |
Scientific data. |
30620344 |
2019 Jan 08; |
| Fibroblast polarization over the myocardial infarction time continuum shifts roles from inflammation to angiogenesis. |
Mouton, Alan J; Ma, Yonggang; Rivera Gonzalez, Osvaldo J; Daseke 2nd, Michael J; Flynn, Elizabeth R; Freeman, Tom C; Garrett, Michael R; DeLeon-Pennell, Kristine Y; Lindsey, Merry L |
Basic research in cardiology |
30635789 |
2019 Jan 11 |
| Creating custom Foldit puzzles for teaching biochemistry. |
Dsilva, Lorna; Mittal, Shubhi; Koepnick, Brian; Flatten, Jeff; Cooper, Seth; Horowitz, Scott |
Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology. |
30638297 |
2019 Jan 14; |
| The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology. |
Schnetz, Michael P; Hochheiser, Harry S; Danks, David J; Landsittel, Douglas P; Vogt, Keith M; Ibinson, James W; Whitehurst, Steven L; McDermott, Sean P; Duque, Melissa Giraldo; Kaynar, Ata M |
BMC medical research methodology. |
30642260 |
2019 Jan 14; |
| Grey Matter Volume Differences Associated with Extremely Low Levels of Cannabis Use in Adolescence. |
Orr, Catherine; Spechler, Philip; Cao, Zhipeng; Albaugh, Matthew; Chaarani, Bader; Mackey, Scott; D'Souza, Deepak; Allgaier, Nicholas; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Burke Quinlan, Erin; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Millenet, Sabina; Fröhner, Juliane H; Radhakrishnan, Rajiv; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Potter, Alexandra; Garavan, Hugh |
The Journal of neuroscience : the official journal of the Society for Neuroscience. |
30643026 |
2019 Mar 06; |
| Development and Validation of an Electronic Health Record-Based Machine Learning Model to Estimate Delirium Risk in Newly Hospitalized Patients Without Known Cognitive Impairment. |
Wong, Andrew; Young, Albert T; Liang, April S; Gonzales, Ralph; Douglas, Vanja C; Hadley, Dexter |
JAMA network open. |
30646095 |
2018 08 03; |
| Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2. |
Dudenkov, Tanda M; Liu, Duan; Cairns, Junmei; Devarajan, Sandhya; Zhuang, Yongxian; Ingle, James N; Buzdar, Aman U; Robson, Mark E; Kubo, Michiaki; Batzler, Anthony; Barman, Poulami; Jenkins, Gregory D; Carlson, Erin E; Goetz, Matthew P; Northfelt, Donald W; Moreno-Aspitia, Alvaro; Desta, Zeruesenay; Reid, Joel M; Kalari, Krishna R; Wang, Liewei; Weinshilboum, Richard M |
Clinical pharmacology and therapeutics. |
30648747 |
2019 Jan 16; |
| PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient. |
Kalari, Krishna R; Sinnwell, Jason P; Thompson, Kevin J; Tang, Xiaojia; Carlson, Erin E; Yu, Jia; Vedell, Peter T; Ingle, James N; Weinshilboum, Richard M; Boughey, Judy C; Wang, Liewei; Goetz, Matthew P; Suman, Vera |
JCO clinical cancer informatics. |
30652605 |
2018 12; |
| A Potential Role for the STXBP5-AS1 Gene in Adult ADHD Symptoms. |
Arias-Vásquez, A; Groffen, A J; Spijker, S; Ouwens, K G; Klein, M; Vojinovic, D; Galesloot, T E; Bralten, J; Hottenga, J J; van der Most, P J; Kattenberg, V M; Pool, R; Nolte, I M; Penninx, B W J H; Fedko, I O; Dolan, C V; Nivard, M G; den Braber, A; van Duijn, C M; Hoekstra, P J; Buitelaar, J K; Kiemeney, L A; Hoogman, M; Middeldorp, C M; Draisma, H H M; Vermeulen, S H; Sánchez-Mora, C; Ramos-Quiroga, J A; Ribasés, M; EAGLE-ADHD Consortium; Hartman, C A; Kooij, J J S; Amin, N; Smit, A B; Franke, B; Boomsma, D I |
Behavior genetics. |
30659475 |
2019 05; |
| A Data Analysis Method for Using Longitudinal Binary Outcome Data from a SMART to Compare Adaptive Interventions. |
Dziak, John J; Yap, Jamie R T; Almirall, Daniel; McKay, James R; Lynch, Kevin G; Nahum-Shani, Inbal |
Multivariate behavioral research. |
30663401 |
2019 Jan 20; |
| Reproducible grey matter patterns index a multivariate, global alteration of brain structure in schizophrenia and bipolar disorder. |
Schwarz, Emanuel; Doan, Nhat Trung; Pergola, Giulio; Westlye, Lars T; Kaufmann, Tobias; Wolfers, Thomas; Brecheisen, Ralph; Quarto, Tiziana; Ing, Alex J; Carlo, Pasquale Di; Gurholt, Tiril P; Harms, Robbert L; Noirhomme, Quentin; Moberget, Torgeir; Agartz, Ingrid; Andreassen, Ole A; Bellani, Marcella; Bertolino, Alessandro; Blasi, Giuseppe; Brambilla, Paolo; Buitelaar, Jan K; Cervenka, Simon; Flyckt, Lena; Frangou, Sophia; Franke, Barbara; Hall, Jeremy; Heslenfeld, Dirk J; Kirsch, Peter; McIntosh, Andrew M; Nöthen, Markus M; Papassotiropoulos, Andreas; de Quervain, Dominique J-F; Rietschel, Marcella; Schumann, Gunter; Tost, Heike; Witt, Stephanie H; Zink, Mathias; Meyer-Lindenberg, Andreas; IMAGEMEND Consortium, Karolinska Schizophrenia Project (KaSP) Consortium |
Translational psychiatry. |
30664633 |
2019 Jan 17; |
| Context-Specific Nested Effects Models. |
Sverchkov, Yuriy; Ho, Yi-Hsuan; Gasch, Audrey; Craven, Mark |
Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005-). |
30680375 |
2018 Apr; |
| The principles of tomorrow's university. |
Katz, Daniel S; Allen, Gabrielle; Barba, Lorena A; Berg, Devin R; Bik, Holly; Boettiger, Carl; Borgman, Christine L; Brown, C Titus; Buck, Stuart; Burd, Randy; de Waard, Anita; Eve, Martin Paul; Granger, Brian E; Greenberg, Josh; Howe, Adina; Howe, Bill; Khanna, May; Killeen, Timothy L; Mayernik, Matthew; McKiernan, Erin; Mentzel, Chris; Merchant, Nirav; Niemeyer, Kyle E; Noren, Laura; Nusser, Sarah M; Reed, Daniel A; Seidel, Edward; Smith, MacKenzie; Spies, Jeffrey R; Turk, Matt; Van Horn, John D; Walsh, Jay |
F1000Research. |
30687499 |
2018; |
| mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. |
Hoffmann, Nils; Rein, Joel; Sachsenberg, Timo; Hartler, Jürgen; Haug, Kenneth; Mayer, Gerhard; Alka, Oliver; Dayalan, Saravanan; Pearce, Jake T M; Rocca-Serra, Philippe; Qi, Da; Eisenacher, Martin; Perez-Riverol, Yasset; Vizcaíno, Juan Antonio; Salek, Reza M; Neumann, Steffen; Jones, Andrew R |
Analytical chemistry. |
30688441 |
2019 Mar 05; |
| Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data. |
Grossman, Robert L |
Trends in genetics : TIG. |
30691868 |
2019 Mar; |
| Machine Learning and Integrative Analysis of Biomedical Big Data. |
Mirza, Bilal; Wang, Wei; Wang, Jie; Choi, Howard; Chung, Neo Christopher; Ping, Peipei |
Genes. |
30696086 |
2019 01 28; |
| Concordance of genetic variation that increases risk for anxiety disorders and posttraumatic stress disorders and that influences their underlying neurocircuitry. |
van der Merwe, Celia; Jahanshad, Neda; Cheung, Josh W; Mufford, Mary; Groenewold, Nynke A; Koen, Nastassja; Ramesar, Rajkumar; Dalvie, Shareefa; ENIGMA Consortium PGC-PTSD; Knowles, James A; Hibar, Derrek P; Nievergelt, Caroline M; Koenen, Karestan C; Liberzon, Israel; Ressler, Kerry J; Medland, Sarah E; Morey, Rajendra A; Thompson, Paul M; Stein, Dan J |
Journal of affective disorders. |
30699873 |
2019 02 15; |
| Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD. |
Chen, Guocai; Jia, Yuxi; Zhu, Lisha; Li, Ping; Zhang, Lin; Tao, Cui; Jim Zheng, W |
BMC medical informatics and decision making. |
30700303 |
2019 Jan 31; |
| An Acute Randomized Controlled Trial of Noninvasive Peripheral Nerve Stimulation in Essential Tremor. |
Pahwa, Rajesh; Dhall, Rohit; Ostrem, Jill; Gwinn, Ryder; Lyons, Kelly; Ro, Susie; Dietiker, Cameron; Luthra, Nijee; Chidester, Paula; Hamner, Samuel; Ross, Erika; Delp, Scott |
Neuromodulation : journal of the International Neuromodulation Society. |
30701655 |
2019 Jul; |
| Automatic real-time gait event detection in children using deep neural networks. |
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PloS one. |
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2019; |
| Selecting precise reference normal tissue samples for cancer research using a deep learning approach. |
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BMC medical genomics. |
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2019 Jan 31; |
| Adaptive Identification of Cortical and Subcortical Imaging Markers of Early Life Stress and Posttraumatic Stress Disorder. |
Salminen, Lauren E; Morey, Rajendra A; Riedel, Brandalyn C; Jahanshad, Neda; Dennis, Emily L; Thompson, Paul M |
Journal of neuroimaging : official journal of the American Society of Neuroimaging. |
30714246 |
2019 Feb 03; |
| The Cortical Neuroimmune Regulator TANK Affects Emotional Processing and Enhances Alcohol Drinking: A Translational Study. |
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Cerebral cortex (New York, N.Y. : 1991). |
30721969 |
2019 04 01; |
| Predicting opioid dependence from electronic health records with machine learning. |
Ellis, Randall J; Wang, Zichen; Genes, Nicholas; Ma'ayan, Avi |
BioData mining. |
30728857 |
2019; |
| Glycoproteomic Profiling Provides Candidate Myocardial Infarction Predictors of Later Progression to Heart Failure. |
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ACS omega. |
30729226 |
2019 Jan 31; |
| Objective risk stratification of prostate cancer using machine learning and radiomics applied to multiparametric magnetic resonance images. |
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Scientific reports. |
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2019 Feb 07; |
| ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model. |
Yu, Yue; Ruddy, Kathryn J; Hong, Na; Tsuji, Shintaro; Wen, Andrew; Shah, Nilay D; Jiang, Guoqian |
Journal of biomedical informatics. |
30738946 |
2019 Mar; |
| Feature extraction for phenotyping from semantic and knowledge resources. |
Ning, Wenxin; Chan, Stephanie; Beam, Andrew; Yu, Ming; Geva, Alon; Liao, Katherine; Mullen, Mary; Mandl, Kenneth D; Kohane, Isaac; Cai, Tianxi; Yu, Sheng |
Journal of biomedical informatics. |
30738949 |
2019 Mar; |
| Feasibility of using social media to monitor outdoor air pollution in London, England. |
Hswen, Yulin; Qin, Qiuyuan; Brownstein, John S; Hawkins, Jared B |
Preventive medicine. |
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2019 04; |
| Sex-specific deficits in neurite density and white matter integrity are associated with targeted disruption of exon 2 of the Disc1 gene in the rat. |
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Translational psychiatry |
30745562 |
2019 Feb 11 |
| DPPred: An Effective Prediction Framework with Concise Discriminative Patterns. |
Shang, Jingbo; Jiang, Meng; Tong, Wenzhu; Xiao, Jinfeng; Peng, Jian; Han, Jiawei; Pooled Resource Open-Access ALS Clinical Trials Consortium* |
IEEE transactions on knowledge and data engineering. |
30745791 |
2018 Jul; |
| Using Twitter to Detect Psychological Characteristics of Self-Identified Persons With Autism Spectrum Disorder: A Feasibility Study. |
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JMIR mHealth and uHealth |
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2019 Feb 12 |
| Hyperbolic Wasserstein Distance for Shape Indexing. |
Shi, Jie; Wang, Yalin |
IEEE transactions on pattern analysis and machine intelligence. |
30763239 |
2019 Feb 08; |
| Evolution of resilience in protein interactomes across the tree of life. |
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Proceedings of the National Academy of Sciences of the United States of America. |
30765515 |
2019 Mar 05; |
| Progressive brain atrophy in chronically infected and treated HIV+ individuals. |
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Journal of neurovirology. |
30767174 |
2019 Feb 14; |
| Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders. |
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Cell systems. |
30772379 |
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| An Integrated Analysis of Neural Network Correlates of Categorical and Dimensional Models of Attention-Deficit/Hyperactivity Disorder. |
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Biological psychiatry. Cognitive neuroscience and neuroimaging. |
30773473 |
2019 05; |
| Instance-Specific Bayesian Network Structure Learning. |
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Proceedings of machine learning research. |
30775723 |
2018 Sep; |
| Racial Differences in Maintaining Optimal Health Behaviors Into Middle Age. |
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American journal of preventive medicine. |
30777156 |
2019 Mar; |
| The variable quality of metadata about biological samples used in biomedical experiments. |
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Scientific data. |
30778255 |
2019 Feb 19; |
| Crowdsourcing to delineate skin affected by chronic graft-vs-host disease. |
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Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI). |
30786065 |
2019 Jul; |
| Wearable Sleep Technology in Clinical and Research Settings. |
DE Zambotti, Massimiliano; Cellini, Nicola; Goldstone, Aimée; Colrain, Ian M; Baker, Fiona C |
Medicine and science in sports and exercise. |
30789439 |
2019 07; |
| Estimating feedforward and feedback effective connections from fMRI time series: Assessments of statistical methods. |
Sanchez-Romero, Ruben; Ramsey, Joseph D; Zhang, Kun; Glymour, Madelyn R K; Huang, Biwei; Glymour, Clark |
Network neuroscience (Cambridge, Mass.). |
30793083 |
2019; |
| A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards: From Sequencer to Electronic Health Record. |
Campbell, Walter S; Carter, Alexis B; Cushman-Vokoun, Allison M; Greiner, Timothy C; Dash, Rajesh C; Routbort, Mark; de Baca, Monica E; Campbell, James R |
The Journal of molecular diagnostics : JMD. |
30797065 |
2019 Feb 20; |
| Just-in-Time but Not Too Much: Determining Treatment Timing in Mobile Health. |
Liao, Peng; Dempsey, Walter; Sarker, Hillol; Hossain, Syed Monowar; Al'absi, Mustafa; Klasnja, Predrag; Murphy, Susan |
Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. |
30801052 |
2018 Dec; |
| Pubertal maturation and sex effects on the default-mode network connectivity implicated in mood dysregulation. |
Ernst, Monique; Benson, Brenda; Artiges, Eric; Gorka, Adam X; Lemaitre, Herve; Lago, Tiffany; Miranda, Ruben; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; |
Translational psychiatry. |
30804326 |
2019 Feb 25; |
| Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0). |
Mi, Huaiyu; Muruganujan, Anushya; Huang, Xiaosong; Ebert, Dustin; Mills, Caitlin; Guo, Xinyu; Thomas, Paul D |
Nature protocols. |
30804569 |
2019 03; |
| Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP. |
Hong, Na; Wen, Andrew; Mojarad, Majid Rastegar; Sohn, Sunghwan; Liu, Hongfang; Jiang, Guoqian |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
30815098 |
2018; |
| Automated Population of an i2b2 Clinical Data Warehouse using FHIR. |
Solbrig, Harold R; Hong, Na; Murphy, Shawn N; Jiang, Guoqian |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
30815141 |
2018; |
| Privacy-preserving biomedical data dissemination via a hybrid approach. |
Jiang, Yichen; Wang, Chenghong; Wu, Zhixuan; Du, Xin; Wang, Shuang |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
30815160 |
2018; |
| Improving breast cancer risk prediction by using demographic risk factors, abnormality features on mammograms and genetic variants. |
Feld, Shara I; Woo, Kaitlin M; Alexandridis, Roxana; Wu, Yirong; Liu, Jie; Peissig, Peggy; Onitilo, Adedayo A; Cox, Jennifer; Page, C David; Burnside, Elizabeth S |
AMIA ... Annual Symposium proceedings. AMIA Symposium. |
30815167 |
2018; |
| Genetic Markers of ADHD-Related Variations in Intracranial Volume. |
Klein, Marieke; Walters, Raymond K; Demontis, Ditte; Stein, Jason L; Hibar, Derrek P; Adams, Hieab H; Bralten, Janita; Roth Mota, Nina; Schachar, Russell; Sonuga-Barke, Edmund; Mattheisen, Manuel; Neale, Benjamin M; Thompson, Paul M; Medland, Sarah E; Børglum, Anders D; Faraone, Stephen V; Arias-Vasquez, Alejandro; Franke, Barbara |
The American journal of psychiatry. |
30818988 |
2019 03 01; |
| A Probabilistic Model to Support Radiologists' Classification Decisions in Mammography Practice. |
Zeng, Jiaming; Gimenez, Francisco; Burnside, Elizabeth S; Rubin, Daniel L; Shachter, Ross |
Medical decision making : an international journal of the Society for Medical Decision Making. |
30819048 |
2019 04; |
| Enhancing safe routes to school programs through community-engaged citizen science: two pilot investigations in lower density areas of Santa Clara County, California, USA. |
Rodriguez, Nicole M; Arce, Alisa; Kawaguchi, Alice; Hua, Jenna; Broderick, Bonnie; Winter, Sandra J; King, Abby C |
BMC public health. |
30823917 |
2019 Mar 01; |
| Distributed learning from multiple EHR databases: Contextual embedding models for medical events. |
Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, Qi |
Journal of biomedical informatics. |
30825539 |
2019 Apr; |
| Federated discovery and sharing of genomic data using Beacons. |
Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena |
Nature biotechnology. |
30833764 |
2019 03; |
| Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity. |
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Current biology : CB. |
30836076 |
2019 Mar 04; |
| Resting-state brain information flow predicts cognitive flexibility in humans. |
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Scientific reports. |
30846746 |
2019 03 07; |
| How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM). |
Küçük McGinty, Hande; Visser, Ubbo; Schürer, Stephan |
Methods in molecular biology (Clifton, N.J.). |
30848456 |
2019; |
| Leveraging Big Data to Transform Drug Discovery. |
Glicksberg, Benjamin S; Li, Li; Chen, Rong; Dudley, Joel; Chen, Bin |
Methods in molecular biology (Clifton, N.J.). |
30848458 |
2019; |
| Unsupervised classification of multi-omics data during cardiac remodeling using deep learning. |
Chung, Neo Christopher; Mirza, Bilal; Choi, Howard; Wang, Jie; Wang, Ding; Ping, Peipei; Wang, Wei |
Methods (San Diego, Calif.). |
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2019 Mar 07; |
| Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. |
Wang, Wenhao; Chen, Guoxing; Pan, Xiaorui; Zhang, Yinqian; Wang, XiaoFeng; Bindschaedler, Vincent; Tang, Haixu; Gunter, Carl A |
Conference on Computer and Communications Security : proceedings of the ... conference on computer and communications security. ACM Conference on Computer and Communications Security. |
30853868 |
2017 Oct-Nov; |
| Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications. |
Sigdel, Dibakar; Kyi, Vincent; Zhang, Aiden; Setty, Shaun P; Liem, David A; Shi, Yu; Wang, Xuan; Shen, Jiaming; Wang, Wei; Han, JiaWei; Ping, Peipei |
Journal of visualized experiments : JoVE. |
30855564 |
2019 02 23; |
| SynSys: A Synthetic Data Generation System for Healthcare Applications. |
Dahmen, Jessamyn; Cook, Diane |
Sensors (Basel, Switzerland). |
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2019 Mar 08; |
| Risk Factors for Development of Carbapenem Resistance Among Gram-Negative Rods. |
Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A |
Open forum infectious diseases. |
30863785 |
2019 Mar; |
| Mapping causal pathways from genetics to neuropsychiatric disorders using genome-wide imaging genetics: Current status and future directions. |
Le, Brandon D; Stein, Jason L |
Psychiatry and clinical neurosciences. |
30864184 |
2019 Jul; |
| AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets. |
Hu, Zhiyue Tom; Ye, Yuting; Newbury, Patrick A; Huang, Haiyan; Chen, Bin |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
30864327 |
2019; |
| When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data. |
Gürsoy, Gamze; Harmanci, Arif; Tang, Haixu; Ayday, Erman; Brenner, Steven E |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing |
30864339 |
2019 |
| Ancestral characterization of 1018 cancer cell lines highlights disparities and reveals gene expression and mutational differences. |
Kessler, Michael D; Bateman, Nicholas W; Conrads, Thomas P; Maxwell, George L; Dunning Hotopp, Julie C; O'Connor, Timothy D |
Cancer. |
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2019 Mar 13; |
| ShortFuse: Biomedical Time Series Representations in the Presence of Structured Information. |
Fiterau, Madalina; Bhooshan, Suvrat; Fries, Jason; Bournhonesque, Charles; Hicks, Jennifer; Halilaj, Eni; Ré, Christopher; Delp, Scott |
Proceedings of machine learning research. |
30882086 |
2017 Aug; |
| Learning the Structure of Generative Models without Labeled Data. |
Bach, Stephen H; He, Bryan; Ratner, Alexander; Ré, Christopher |
Proceedings of machine learning research. |
30882087 |
2017 Aug; |
| The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia: design, results and future prospects. |
Middeldorp, Christel M; Felix, Janine F; Mahajan, Anubha; EArly Genetics Lifecourse Epidemiology (EAGLE) consortium; Early Growth Genetics (EGG) consortium; McCarthy, Mark I |
European journal of epidemiology. |
30887376 |
2019 Mar; |
| Concordance of genetic variation that increases risk for tourette syndrome and that influences its underlying neurocircuitry. |
Mufford, Mary; Cheung, Josh; Jahanshad, Neda; van der Merwe, Celia; Ding, Linda; Groenewold, Nynke; Koen, Nastassja; Chimusa, Emile R; Dalvie, Shareefa; Ramesar, Raj; Knowles, James A; Lochner, Christine; Hibar, Derrek P; Paschou, Peristera; van den Heuvel, Odile A; Medland, Sarah E; Scharf, Jeremiah M; Mathews, Carol A; Thompson, Paul M; Stein, Dan J; Psychiatric Genomics Consortium - Tourette Syndrome working group |
Translational psychiatry. |
30902966 |
2019 Mar 22; |
| ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data. |
Manjunath, Mohith; Zhang, Yi; Yeo, Steve H; Sobh, Omar; Russell, Nathan; Followell, Christian; Bushell, Colleen; Ravaioli, Umberto; Song, Jun S |
PeerJ. Computer science. |
30906871 |
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| iSurvive: An Interpretable, Event-time Prediction Model for mHealth. |
Dempsey, Walter H; Moreno, Alexander; Scott, Christy K; Dennis, Michael L; Gustafson, David H; Murphy, Susan A; Rehg, James M |
Proceedings of machine learning research. |
30906932 |
2017; |
| Creating a digital memory notebook application for individuals with mild cognitive impairment to support everyday functioning. |
Raghunath, Nisha; Dahmen, Jessamyn; Brown, Katelyn; Cook, Diane; Schmitter-Edgecombe, Maureen |
Disability and rehabilitation. Assistive technology |
30907223 |
2020 05 |
| Comparison of blockchain platforms: a systematic review and healthcare examples. |
Kuo, Tsung-Ting; Zavaleta Rojas, Hugo; Ohno-Machado, Lucila |
Journal of the American Medical Informatics Association : JAMIA. |
30907419 |
2019 05 01; |
| Toward Sensor-Based Sleep Monitoring with Electrodermal Activity Measures. |
Romine, William; Banerjee, Tanvi; Goodman, Garrett |
Sensors (Basel, Switzerland) |
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2019 Mar 22 |
| Mechanical activation of noncoding-RNA-mediated regulation of disease-associated phenotypes in human cardiomyocytes. |
Kumar, Aditya; Thomas, Stephanie K; Wong, Kirsten C; Lo Sardo, Valentina; Cheah, Daniel S; Hou, Yang-Hsun; Placone, Jesse K; Tenerelli, Kevin P; Ferguson, William C; Torkamani, Ali; Topol, Eric J; Baldwin, Kristin K; Engler, Adam J |
Nature biomedical engineering. |
30911429 |
2019 Feb; |
| Anticipating innovations in structural biology. |
Berman, Helen M; Lawson, Catherine L; Vallat, Brinda; Gabanyi, Margaret J |
Quarterly reviews of biophysics. |
30912485 |
2018 01; |
| Standardizing Analytic Methods and Reporting in Activity Monitor Validation Studies. |
Welk, Gregory J; Bai, Yang; Lee, Jung-Min; Godino, Job; Saint-Maurice, Pedro F; Carr, Lucas |
Medicine and science in sports and exercise. |
30913159 |
2019 08; |
| Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. |
Kochunov, Peter; Patel, Binish; Ganjgahi, Habib; Donohue, Brian; Ryan, Meghann; Hong, Elliot L; Chen, Xu; Adhikari, Bhim; Jahanshad, Neda; Thompson, Paul M; Van't Ent, Dennis; den Braber, Anouk; de Geus, Eco J C; Brouwer, Rachel M; Boomsma, Dorret I; Hulshoff Pol, Hilleke E; de Zubicaray, Greig I; McMahon, Katie L; Martin, Nicholas G; Wright, Margaret J; Nichols, Thomas E |
Frontiers in neuroinformatics. |
30914942 |
2019; |
| Learning the Network Structure of Heterogeneous Data via Pairwise Exponential Markov Random Fields. |
Park, Youngsuk; Hallac, David; Boyd, Stephen; Leskovec, Jure |
Proceedings of machine learning research. |
30931433 |
2017 Apr; |
| Snorkel MeTaL: Weak Supervision for Multi-Task Learning. |
Ratner, Alex; Hancock, Braden; Dunnmon, Jared; Goldman, Roger; Ré, Christopher |
Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). |
30931438 |
2018 Jun; |
| Learning one's genetic risk changes physiology independent of actual genetic risk. |
Turnwald, Bradley P; Goyer, J Parker; Boles, Danielle Z; Silder, Amy; Delp, Scott L; Crum, Alia J |
Nature human behaviour. |
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2019 Jan; |
| Unveiling the Kinomes of Leishmania infantum and L. braziliensis Empowers the Discovery of New Kinase Targets and Antileishmanial Compounds. |
Borba, Joyce V B; Silva, Arthur C; Ramos, Pablo I P; Grazzia, Nathalia; Miguel, Danilo C; Muratov, Eugene N; Furnham, Nicholas; Andrade, Carolina H |
Computational and structural biotechnology journal. |
30949306 |
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| Causal Discovery from Discrete Data using Hidden Compact Representation. |
Cai, Ruichu; Qiao, Jie; Zhang, Kun; Zhang, Zhenjie; Hao, Zhifeng |
Advances in neural information processing systems. |
30956519 |
2018 Dec; |
| HDDA: DataSifter: statistical obfuscation of electronic health records and other sensitive datasets. |
Marino, Simeone; Zhou, Nina; Zhao, Yi; Wang, Lu; Wu, Qiucheng; Dinov, Ivo D |
Journal of statistical computation and simulation. |
30962669 |
2018; |
| A data citation roadmap for scholarly data repositories. |
Fenner, Martin; Crosas, Mercè; Grethe, Jeffrey S; Kennedy, David; Hermjakob, Henning; Rocca-Serra, Phillippe; Durand, Gustavo; Berjon, Robin; Karcher, Sebastian; Martone, Maryann; Clark, Tim |
Scientific data. |
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2019 04 10; |
| Multi-domain Causal Structure Learning in Linear Systems. |
Ghassami, AmirEmad; Kiyavash, Negar; Huang, Biwei; Zhang, Kun |
Advances in neural information processing systems. |
30971863 |
2018 Dec; |
| Modeling Dynamic Missingness of Implicit Feedback for Recommendation. |
Wang, Menghan; Gong, Mingming; Zheng, Xiaolin; Zhang, Kun |
Advances in neural information processing systems. |
30971864 |
2018 Dec; |
| Reproducible big data science: A case study in continuous FAIRness. |
Madduri, Ravi; Chard, Kyle; D'Arcy, Mike; Jung, Segun C; Rodriguez, Alexis; Sulakhe, Dinanath; Deutsch, Eric; Funk, Cory; Heavner, Ben; Richards, Matthew; Shannon, Paul; Glusman, Gustavo; Price, Nathan; Kesselman, Carl; Foster, Ian |
PloS one. |
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| Predictive Big Data Analytics using the UK Biobank Data. |
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Scientific reports. |
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2019 Apr 12; |
| Assessing the value of a censored surrogate outcome. |
Parast, Layla; Tian, Lu; Cai, Tianxi |
Lifetime data analysis. |
30980316 |
2019 Apr 12; |
| ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets. |
Pullman, Benjamin S; Wertz, Julie; Carver, Jeremy; Bandeira, Nuno |
Journal of proteome research. |
30985146 |
2018 12 07; |
| Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms. |
Can, Anil; Lai, Pui Man Rosalind; Castro, Victor M; Yu, Sheng; Dligach, Dmitriy; Finan, Sean; Gainer, Vivian; Shadick, Nancy A; Savova, Guergana; Murphy, Shawn; Cai, Tianxi; Weiss, Scott T; Du, Rose |
Scientific reports. |
30988354 |
2019 Apr 15; |
| An average-case sublinear forward algorithm for the haploid Li and Stephens model. |
Rosen, Yohei M; Paten, Benedict J |
Algorithms for molecular biology : AMB. |
30988694 |
2019; |
| Deep Learning Benchmarks on L1000 Gene Expression Data. |
McDermott, Matthew; Wang, Jennifer; Zhao, Wen Ning; Sheridan, Steven D; Szolovits, Peter; Kohane, Isaac; Haggarty, Stephen J; Perlis, Roy H |
IEEE/ACM transactions on computational biology and bioinformatics. |
30990190 |
2019 Apr 11; |
| Neuroimaging Evidence for Right Orbitofrontal Cortex Differences in Adolescents With Emotional and Behavioral Dysregulation. |
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Journal of the American Academy of Child and Adolescent Psychiatry. |
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European journal of human genetics : EJHG. |
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Biological psychiatry. Cognitive neuroscience and neuroimaging. |
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The Journal of surgical research. |
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Magnetic resonance imaging. |
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Biochimica et biophysica acta. Molecular basis of disease. |
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Biological psychiatry. |
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Methods in enzymology. |
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Proceedings of the conference. Association for Computational Linguistics. Meeting. |
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Advances in neural information processing systems. |
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Proceedings of the ... Annual ACM-SIAM Symposium on Discrete Algorithms. ACM-SIAM Symposium on Discrete Algorithms. |
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Proceedings of the Second Workshop on Data Management for End-to-End Machine Learning. Workshop on Data Management for End-to-End Machine Learning (2nd : 2018 : Houston, Tex.). |
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| Optogenetic perturbation of the biochemical pathways that control cell behavior. |
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Methods in enzymology. |
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| Haplotype-aware diplotyping from noisy long reads. |
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Genome biology. |
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| De novo protein design by citizen scientists. |
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| Rapid energy expenditure estimation for ankle assisted and inclined loaded walking. |
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Journal of neuroengineering and rehabilitation. |
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2019 Jun 06; |
| Quantifying performance of machine learning methods for neuroimaging data. |
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| Age-based versus Risk-based Mammography Screening in Women 40-49 Years Old: A Cross-sectional Study. |
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Radiology. |
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Nature communications. |
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| Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. |
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Database : the journal of biological databases and curation. |
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Frontiers in genetics. |
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| Machine learning techniques for personalized breast cancer risk prediction: comparison with the BCRAT and BOADICEA models. |
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Breast cancer research : BCR. |
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| Augmenting subnetwork inference with information extracted from the scientific literature. |
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PLoS computational biology. |
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| Pathway-level information extractor (PLIER) for gene expression data. |
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Nature methods. |
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| Cheminformatics-driven discovery of polymeric micelle formulations for poorly soluble drugs. |
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Journal of the Medical Library Association : JMLA. |
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| Privacy-Preserving Collaborative Prediction using Random Forests. |
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AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. |
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| Machine Learning Assisted Discovery of Novel Predictive Lab Tests Using Electronic Health Record Data. |
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| Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results. |
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Journal of proteome research. |
31260318 |
2019 08 02; |
| Predicting development of adolescent drinking behaviour from whole brain structure at 14 years of age. |
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eLife. |
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2019 Jul 02; |
| Altered Cortical Brain Structure and Increased Risk for Disease Seen Decades After Perinatal Exposure to Maternal Smoking: A Study of 9000 Adults in the UK Biobank. |
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Cerebral cortex (New York, N.Y. : 1991). |
31271414 |
2019 Jul 04; |
| The joint effect of aging and HIV infection on microstructure of white matter bundles. |
Kuhn, Taylor; Jin, Yan; Huang, Chao; Kim, Yeun; Nir, Talia M; Gullett, Joseph M; Jones, Jacob D; Sayegh, Phillip; Chung, Caroline; Dang, Bianca H; Singer, Elyse J; Shattuck, David W; Jahanshad, Neda; Bookheimer, Susan Y; Hinkin, Charles H; Zhu, Hongtu; Thompson, Paul M; Thames, April D |
Human brain mapping. |
31271489 |
2019 10 15; |
| OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. |
He, Yongqun; Duncan, William D; Cooper, Daniel J; Hansen, Jens; Iyengar, Ravi; Ong, Edison; Walker, Kendal; Tibi, Omar; Smith, Sam; Serra, Lucas M; Zheng, Jie; Sarntivijai, Sirarat; Schürer, Stephan; O'Shea, K Sue; Diehl, Alexander D |
BMC bioinformatics. |
31272389 |
2019 Apr 25; |
| Reporting and connecting cell type names and gating definitions through ontologies. |
Overton, James A; Vita, Randi; Dunn, Patrick; Burel, Julie G; Bukhari, Syed Ahmad Chan; Cheung, Kei-Hoi; Kleinstein, Steven H; Diehl, Alexander D; Peters, Bjoern |
BMC bioinformatics |
31272390 |
2019 Apr 25 |
| Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients. |
Bhattacharyya, Sudeepa; Ahmed, Ahmed T; Arnold, Matthias; Liu, Duan; Luo, Chunqiao; Zhu, Hongjie; Mahmoudiandehkordi, Siamak; Neavin, Drew; Louie, Gregory; Dunlop, Boadie W; Frye, Mark A; Wang, Liewei; Weinshilboum, Richard M; Krishnan, Ranga R; Rush, A John; Kaddurah-Daouk, Rima |
Translational psychiatry. |
31273200 |
2019 Jul 04; |
| Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. |
Cai, Chunhui; Cooper, Gregory F; Lu, Kevin N; Ma, Xiaojun; Xu, Shuping; Zhao, Zhenlong; Chen, Xueer; Xue, Yifan; Lee, Adrian V; Clark, Nathan; Chen, Vicky; Lu, Songjian; Chen, Lujia; Yu, Liyue; Hochheiser, Harry S; Jiang, Xia; Wang, Q Jane; Lu, Xinghua |
PLoS computational biology. |
31276486 |
2019 07; |
| PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. |
Shteynberg, David D; Deutsch, Eric W; Campbell, David S; Hoopmann, Michael R; Kusebauch, Ulrike; Lee, Dave; Mendoza, Luis; Midha, Mukul Kumar; Sun, Zhi; Whetton, Anthony D; Moritz, Robert L |
Journal of proteome research. |
31290668 |
2019 Jul 10; |
| Single Nucleotide Polymorphisms at a Distance from Aryl Hydrocarbon Receptor (AHR) Binding Sites Influence AHR Ligand-Dependent Gene Expression. |
Neavin, Drew R; Lee, Jeong-Heon; Liu, Duan; Ye, Zhenqing; Li, Hu; Wang, Liewei; Ordog, Tamas; Weinshilboum, Richard M |
Drug metabolism and disposition: the biological fate of chemicals. |
31292129 |
2019 09; |
| Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants. |
Cline, Melissa S; Babbi, Giulia; Bonache, Sandra; Cao, Yue; Casadio, Rita; de la Cruz, Xavier; Díez, Orland; Gutiérrez-Enríquez, Sara; Katsonis, Panagiotis; Lai, Carmen; Lichtarge, Olivier; Martelli, Pier L; Mishne, Gilad; Moles-Fernández, Alejandro; Montalban, Gemma; Mooney, Sean D; O'Conner, Robert; Ootes, Lars; Özkan, Selen; Padilla, Natalia; Pagel, Kymberleigh A; Pejaver, Vikas; Radivojac, Predrag; Riera, Casandra; Savojardo, Castrense; Shen, Yang; Sun, Yuanfei; Topper, Scott; Parsons, Michael T; Spurdle, Amanda B; Goldgar, David E; ENIGMA Consortium |
Human mutation. |
31294896 |
2019 Sep; |
| Best practices for analyzing large-scale health data from wearables and smartphone apps. |
Hicks, Jennifer L; Althoff, Tim; Sosic, Rok; Kuhar, Peter; Bostjancic, Bojan; King, Abby C; Leskovec, Jure; Delp, Scott L |
NPJ digital medicine. |
31304391 |
2019; |
| Weakly supervised classification of aortic valve malformations using unlabeled cardiac MRI sequences. |
Fries, Jason A; Varma, Paroma; Chen, Vincent S; Xiao, Ke; Tejeda, Heliodoro; Saha, Priyanka; Dunnmon, Jared; Chubb, Henry; Maskatia, Shiraz; Fiterau, Madalina; Delp, Scott; Ashley, Euan; Ré, Christopher; Priest, James R |
Nature communications. |
31308376 |
2019 Jul 15; |
| Irritability and brain volume in adolescents: cross-sectional and longitudinal associations. |
Dennis, Emily L; Humphreys, Kathryn L; King, Lucy S; Thompson, Paul M; Gotlib, Ian H |
Social cognitive and affective neuroscience. |
31309969 |
2019 07 31; |
| Functional network connectivity impairments and core cognitive deficits in schizophrenia. |
Adhikari, Bhim M; Hong, L Elliot; Sampath, Hemalatha; Chiappelli, Joshua; Jahanshad, Neda; Thompson, Paul M; Rowland, Laura M; Calhoun, Vince D; Du, Xiaoming; Chen, Shuo; Kochunov, Peter |
Human brain mapping. |
31313441 |
2019 11 01; |
| Fast Causal Inference with Non-Random Missingness by Test-Wise Deletion. |
Strobl, Eric V; Visweswaran, Shyam; Spirtes, Peter L |
International journal of data science and analytics. |
31321289 |
2018 Aug; |
| Cannabis-Associated Psychotic-like Experiences Are Mediated by Developmental Changes in the Parahippocampal Gyrus. |
Yu, Tao; Jia, Tianye; Zhu, Liping; Desrivières, Sylvane; Macare, Christine; Bi, Yan; Bokde, Arun L W; Quinlan, Erin Burke; Heinz, Andreas; Ittermann, Bernd; Liu, ChuanXin; Ji, Lei; Banaschewski, Tobias; Ren, Decheng; Du, Li; Hou, Binyin; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Luo, Qiang; Chu, Congying; Paus, Tomas; Poustka, Luise; Hohmann, Sarah; Millenet, Sabina; Smolka, Michael N; Vetter, Nora C; Mennigen, Eva; Lei, Cai; Walter, Henrik; Fröhner, Juliane H; Whelan, Robert; He, Guang; He, Lin; Schumann, Gunter; Robert, Gabriel; IMAGEN Consortium |
Journal of the American Academy of Child and Adolescent Psychiatry |
31326579 |
2020 05 |
| Heavy drinking in adolescents is associated with change in brainstem microstructure and reward sensitivity. |
Galinowski, André; Miranda, Ruben; Lemaitre, Hervé; Artiges, Eric; Paillère Martinot, Marie-Laure; Filippi, Irina; Penttilä, Jani; Grimmer, Yvonne; van Noort, Betteke M; Stringaris, Argyris; Becker, Andreas; Isensee, Corinna; Struve, Maren; Fadai, Tahmine; Kappel, Viola; Goodman, Robert; Banaschewski, Tobias; Bokde, Arun L W; Bromberg, Uli; Brühl, Rüdiger; Büchel, Christian; Cattrell, Anna; Conrod, Patricia; Desrivières, Sylvane; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Gallinat, Juergen; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hohmann, Sarah; Jurk, Sarah; Millenet, Sabina; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Poustka, Luise; Quinlan, Erin Burke; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Martinot, Jean-Luc; IMAGEN Consortium |
Addiction biology. |
31328396 |
2020 May; |
| iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. |
Rojo, Constanza; Zhang, Qi; Kele?, Sündüz |
Genetic epidemiology. |
31328826 |
2019 10; |
| We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts? |
Wheeler, Nicole |
Thorax. |
31331948 |
2019 Sep; |
| White Matter in Schizophrenia Treatment Resistance. |
Kochunov, Peter; Huang, Junchao; Chen, Song; Li, Yanli; Tan, Shuping; Fan, Fengmei; Feng, Wei; Wang, Yunhui; Rowland, Laura M; Savransky, Anya; Du, Xiaoming; Chiappelli, Joshua; Chen, Shuo; Jahanshad, Neda; Thompson, Paul M; Ryan, Meghann C; Adhikari, Bhim; Sampath, Hemalatha; Cui, Yimin; Wang, Zhiren; Yang, Fude; Tan, Yunlong; Hong, L Elliot |
The American journal of psychiatry. |
31352812 |
2019 10 01; |
| No Alterations of Brain Structural Asymmetry in Major Depressive Disorder: An ENIGMA Consortium Analysis. |
de Kovel, Carolien G F; Aftanas, Lyubomir; Aleman, André; Alexander-Bloch, Aaron F; Baune, Bernhard T; Brack, Ivan; Bülow, Robin; Busatto Filho, Geraldo; Carballedo, Angela; Connolly, Colm G; Cullen, Kathryn R; Dannlowski, Udo; Davey, Christopher G; Dima, Danai; Dohm, Katharina; Erwin-Grabner, Tracy; Frodl, Thomas; Fu, Cynthia H Y; Hall, Geoffrey B; Glahn, David C; Godlewska, Beata; Gotlib, Ian H; Goya-Maldonado, Roberto; Grabe, Hans Jörgen; Groenewold, Nynke A; Grotegerd, Dominik; Gruber, Oliver; Harris, Mathew A; Harrison, Ben J; Hatton, Sean N; Hickie, Ian B; Ho, Tiffany C; Jahanshad, Neda; Kircher, Tilo; Krämer, Bernd; Krug, Axel; Lagopoulos, Jim; Leehr, Elisabeth J; Li, Meng; MacMaster, Frank P; MacQueen, Glenda; McIntosh, Andrew M; McLellan, Quinn; Medland, Sarah E; Mueller, Bryon A; Nenadic, Igor; Osipov, Evgeny; Papmeyer, Martina; Portella, Maria J; Reneman, Liesbeth; Rosa, Pedro G P; Sacchet, Matthew D; Schnell, Knut; Schrantee, Anouk; Sim, Kang; Simulionyte, Egle; Sindermann, Lisa; Singh, Aditya; Stein, Dan J; Ubani, Benjamin N; Van der Wee, Nic J A; Van der Werff, Steven J A; Veer, Ilya M; Vives-Gilabert, Yolanda; Völzke, Henry; Walter, Henrik; Walter, Martin; Schreiner, Melinda Westlund; Whalley, Heather; Winter, Nils; Wittfeld, Katharina; Yang, Tony T; Yüksel, Dilara; Zaremba, Dario; Thompson, Paul M; Veltman, Dick J; Schmaal, Lianne; Francks, Clyde |
The American journal of psychiatry. |
31352813 |
2019 12 01; |
| Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases. |
O'Banion, Colin P; Vickerman, Brianna M; Haar, Lauren; Lawrence, David S |
Cell chemical biology. |
31353320 |
2019 Oct 17; |
| Temporal Poisson Square Root Graphical Models. |
Geng, Sinong; Kuang, Zhaobin; Peissig, Peggy; Page, David |
Proceedings of machine learning research. |
31355361 |
2018 Jul; |
| ROBOT: A Tool for Automating Ontology Workflows. |
Jackson, Rebecca C; Balhoff, James P; Douglass, Eric; Harris, Nomi L; Mungall, Christopher J; Overton, James A |
BMC bioinformatics. |
31357927 |
2019 Jul 29; |
| Altered white matter microstructure in 22q11.2 deletion syndrome: a multisite diffusion tensor imaging study. |
Villalón-Reina, Julio E; Martínez, Kenia; Qu, Xiaoping; Ching, Christopher R K; Nir, Talia M; Kothapalli, Deydeep; Corbin, Conor; Sun, Daqiang; Lin, Amy; Forsyth, Jennifer K; Kushan, Leila; Vajdi, Ariana; Jalbrzikowski, Maria; Hansen, Laura; Jonas, Rachel K; van Amelsvoort, Therese; Bakker, Geor; Kates, Wendy R; Antshel, Kevin M; Fremont, Wanda; Campbell, Linda E; McCabe, Kathryn L; Daly, Eileen; Gudbrandsen, Maria; Murphy, Clodagh M; Murphy, Declan; Craig, Michael; Emanuel, Beverly; McDonald-McGinn, Donna M; Vorstman, Jacob A S; Fiksinski, Ania M; Koops, Sanne; Ruparel, Kosha; Roalf, David; Gur, Raquel E; Eric Schmitt, J; Simon, Tony J; Goodrich-Hunsaker, Naomi J; Durdle, Courtney A; Doherty, Joanne L; Cunningham, Adam C; van den Bree, Marianne; Linden, David E J; Owen, Michael; Moss, Hayley; Kelly, Sinead; Donohoe, Gary; Murphy, Kieran C; Arango, Celso; Jahanshad, Neda; Thompson, Paul M; Bearden, Carrie E |
Molecular psychiatry. |
31358905 |
2019 Jul 29; |
| New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders. |
Evangelou, Evangelos; Gao, He; Chu, Congying; Ntritsos, Georgios; Blakeley, Paul; Butts, Andrew R; Pazoki, Raha; Suzuki, Hideaki; Koskeridis, Fotios; Yiorkas, Andrianos M; Karaman, Ibrahim; Elliott, Joshua; Luo, Qiang; Aeschbacher, Stefanie; Bartz, Traci M; Baumeister, Sebastian E; Braund, Peter S; Brown, Michael R; Brody, Jennifer A; Clarke, Toni-Kim; Dimou, Niki; Faul, Jessica D; Homuth, Georg; Jackson, Anne U; Kentistou, Katherine A; Joshi, Peter K; Lemaitre, Rozenn N; Lind, Penelope A; Lyytikäinen, Leo-Pekka; Mangino, Massimo; Milaneschi, Yuri; Nelson, Christopher P; Nolte, Ilja M; Perälä, Mia-Maria; Polasek, Ozren; Porteous, David; Ratliff, Scott M; Smith, Jennifer A; Stan?áková, Alena; Teumer, Alexander; Tuominen, Samuli; Thériault, Sébastien; Vangipurapu, Jagadish; Whitfield, John B; Wood, Alexis; Yao, Jie; Yu, Bing; Zhao, Wei; Arking, Dan E; Auvinen, Juha; Liu, Chunyu; Männikkö, Minna; Risch, Lorenz; Rotter, Jerome I; Snieder, Harold; Veijola, Juha; Blakemore, Alexandra I; Boehnke, Michael; Campbell, Harry; Conen, David; Eriksson, Johan G; Grabe, Hans J; Guo, Xiuqing; van der Harst, Pim; Hartman, Catharina A; Hayward, Caroline; Heath, Andrew C; Jarvelin, Marjo-Riitta; Kähönen, Mika; Kardia, Sharon L R; Kühne, Michael; Kuusisto, Johanna; Laakso, Markku; Lahti, Jari; Lehtimäki, Terho; McIntosh, Andrew M; Mohlke, Karen L; Morrison, Alanna C; Martin, Nicholas G; Oldehinkel, Albertine J; Penninx, Brenda W J H; Psaty, Bruce M; Raitakari, Olli T; Rudan, Igor; Samani, Nilesh J; Scott, Laura J; Spector, Tim D; Verweij, Niek; Weir, David R; Wilson, James F; Levy, Daniel; Tzoulaki, Ioanna; Bell, Jimmy D; Matthews, Paul M; Rothenfluh, Adrian; Desrivières, Sylvane; Schumann, Gunter; Elliott, Paul |
Nature human behaviour. |
31358974 |
2019 09; |
| Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements. |
Tsueng, Ginger; Kumar, Arun; Nanis, Steven M; Su, Andrew I |
Human computation (Fairfax, Va.). |
31363486 |
2019; |
| PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. |
Sánchez, Luis Francisco Hernández; Burger, Bram; Horro, Carlos; Fabregat, Antonio; Johansson, Stefan; Njølstad, Pål Rasmus; Barsnes, Harald; Hermjakob, Henning; Vaudel, Marc |
GigaScience. |
31363752 |
2019 08 01; |
| Sequence tube maps: making graph genomes intuitive to commuters. |
Beyer, Wolfgang; Novak, Adam M; Hickey, Glenn; Chan, Jeffrey; Tan, Vanessa; Paten, Benedict; Zerbino, Daniel R |
Bioinformatics (Oxford, England). |
31368484 |
2019 Dec 15; |
| Predicting kinase inhibitors using bioactivity matrix derived informer sets. |
Zhang, Huikun; Ericksen, Spencer S; Lee, Ching-Pei; Ananiev, Gene E; Wlodarchak, Nathan; Yu, Peng; Mitchell, Julie C; Gitter, Anthony; Wright, Stephen J; Hoffmann, F Michael; Wildman, Scott A; Newton, Michael A |
PLoS computational biology. |
31381559 |
2019 08; |
| Quantifying the impact of public omics data. |
Perez-Riverol, Yasset; Zorin, Andrey; Dass, Gaurhari; Vu, Manh-Tu; Xu, Pan; Glont, Mihai; Vizcaíno, Juan Antonio; Jarnuczak, Andrew F; Petryszak, Robert; Ping, Peipei; Hermjakob, Henning |
Nature communications. |
31383865 |
2019 Aug 05; |
| Architecture and usability of OntoKeeper, an ontology evaluation tool. |
Amith, Muhammad; Manion, Frank; Liang, Chen; Harris, Marcelline; Wang, Dennis; He, Yongqun; Tao, Cui |
BMC medical informatics and decision making. |
31391056 |
2019 08 08; |
| Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types. |
Yu, K; Chen, B; Aran, D; Charalel, J; Yau, C; Wolf, D M; van 't Veer, L J; Butte, A J; Goldstein, T; Sirota, M |
Nature communications. |
31395879 |
2019 Aug 08; |
| Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis. |
Zheng, Zihao; Mergaert, Aisha M; Fahmy, Lauren M; Bawadekar, Mandar; Holmes, Caitlyn L; Ong, Irene M; Bridges, Alan J; Newton, Michael A; Shelef, Miriam A |
Arthritis & rheumatology (Hoboken, N.J.). |
31397047 |
2019 Aug 08; |
| APOE?4 Gene Dose and Sex Effects on Alzheimer's Disease MRI Biomarkers in Older Adults with Mild Cognitive Impairment. |
Hobel, Zachary; Isenberg, A Lisette; Raghupathy, Dhvani; Mack, Wendy; Pa, Judy; Alzheimer?s Disease Neuroimaging Initiative and the Australian Imaging Biomarkers and Lifestyle flagship study of ageing |
Journal of Alzheimer's disease : JAD. |
31424388 |
2019; |
| Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. |
Omenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Corrales, Fernando J; Schwenk, Jochen M; Paik, Young-Ki; Van Eyk, Jennifer E; Liu, Siqi; Pennington, Stephen; Snyder, Michael P; Baker, Mark S; Deutsch, Eric W |
Journal of proteome research. |
31430157 |
2019 Dec 06; |
| Context-Aware Delivery of Ecological Momentary Assessment. |
Aminikhanghahi, Samaneh; Schmitter-Edgecombe, Maureen; Cook, Diane J |
IEEE journal of biomedical and health informatics |
31443058 |
2020 04 |
| The Association Between Familial Risk and Brain Abnormalities Is Disease Specific: An ENIGMA-Relatives Study of Schizophrenia and Bipolar Disorder. |
de Zwarte, Sonja M C; Brouwer, Rachel M; Agartz, Ingrid; Alda, Martin; Aleman, André; Alpert, Kathryn I; Bearden, Carrie E; Bertolino, Alessandro; Bois, Catherine; Bonvino, Aurora; Bramon, Elvira; Buimer, Elizabeth E L; Cahn, Wiepke; Cannon, Dara M; Cannon, Tyrone D; Caseras, Xavier; Castro-Fornieles, Josefina; Chen, Qiang; Chung, Yoonho; De la Serna, Elena; Di Giorgio, Annabella; Doucet, Gaelle E; Eker, Mehmet Cagdas; Erk, Susanne; Fears, Scott C; Foley, Sonya F; Frangou, Sophia; Frankland, Andrew; Fullerton, Janice M; Glahn, David C; Goghari, Vina M; Goldman, Aaron L; Gonul, Ali Saffet; Gruber, Oliver; de Haan, Lieuwe; Hajek, Tomas; Hawkins, Emma L; Heinz, Andreas; Hillegers, Manon H J; Hulshoff Pol, Hilleke E; Hultman, Christina M; Ingvar, Martin; Johansson, Viktoria; Jönsson, Erik G; Kane, Fergus; Kempton, Matthew J; Koenis, Marinka M G; Kopecek, Miloslav; Krabbendam, Lydia; Krämer, Bernd; Lawrie, Stephen M; Lenroot, Rhoshel K; Marcelis, Machteld; Marsman, Jan-Bernard C; Mattay, Venkata S; McDonald, Colm; Meyer-Lindenberg, Andreas; Michielse, Stijn; Mitchell, Philip B; Moreno, Dolores; Murray, Robin M; Mwangi, Benson; Najt, Pablo; Neilson, Emma; Newport, Jason; van Os, Jim; Overs, Bronwyn; Ozerdem, Aysegul; Picchioni, Marco M; Richter, Anja; Roberts, Gloria; Aydogan, Aybala Saricicek; Schofield, Peter R; Simsek, Fatma; Soares, Jair C; Sugranyes, Gisela; Toulopoulou, Timothea; Tronchin, Giulia; Walter, Henrik; Wang, Lei; Weinberger, Daniel R; Whalley, Heather C; Yalin, Nefize; Andreassen, Ole A; Ching, Christopher R K; van Erp, Theo G M; Turner, Jessica A; Jahanshad, Neda; Thompson, Paul M; Kahn, René S; van Haren, Neeltje E M |
Biological psychiatry. |
31443932 |
2019 10 01; |
| Inverse probability weighted Cox model in multi-site studies without sharing individual-level data. |
Shu, Di; Yoshida, Kazuki; Fireman, Bruce H; Toh, Sengwee |
Statistical methods in medical research. |
31448681 |
2019 Aug 26; |
| Learning High-dimensional Directed Acyclic Graphs with Mixed Data-types. |
Andrews, Bryan; Ramsey, Joseph; Cooper, Gregory F |
Proceedings of machine learning research. |
31453569 |
2019 Aug; |
| Genomic GPS: using genetic distance from individuals to public data for genomic analysis without disclosing personal genomes. |
Kim, Kunhee; Baik, Hyungryul; Jang, Chloe Soohyun; Roh, Jin Kyung; Eskin, Eleazer; Han, Buhm |
Genome biology |
31455387 |
2019 08 27 |
| Practical Considerations for Data Collection and Management in Mobile Health Micro-randomized Trials. |
Seewald, Nicholas J; Smith, Shawna N; Lee, Andy Jinseok; Klasnja, Predrag; Murphy, Susan A |
Statistics in biosciences. |
31462937 |
2019 Jul; |
| Functional Brain Hyperactivations Are Linked to an Electrophysiological Measure of Slow Interhemispheric Transfer Time after Pediatric Moderate/Severe Traumatic Brain Injury. |
Olsen, Alexander; Babikian, Talin; Dennis, Emily L; Ellis-Blied, Monica U; Giza, Christopher; Marion, Sarah DeBoard; Mink, Richard; Johnson, Jeffrey; Babbitt, Christopher J; Thompson, Paul M; Asarnow, Robert F |
Journal of neurotrauma. |
31469049 |
2020 Jan 15; |
| White matter disturbances in major depressive disorder: a coordinated analysis across 20 international cohorts in the ENIGMA MDD working group. |
van Velzen, Laura S; Kelly, Sinead; Isaev, Dmitry; Aleman, Andre; Aftanas, Lyubomir I; Bauer, Jochen; Baune, Bernhard T; Brak, Ivan V; Carballedo, Angela; Connolly, Colm G; Couvy-Duchesne, Baptiste; Cullen, Kathryn R; Danilenko, Konstantin V; Dannlowski, Udo; Enneking, Verena; Filimonova, Elena; Förster, Katharina; Frodl, Thomas; Gotlib, Ian H; Groenewold, Nynke A; Grotegerd, Dominik; Harris, Mathew A; Hatton, Sean N; Hawkins, Emma L; Hickie, Ian B; Ho, Tiffany C; Jansen, Andreas; Kircher, Tilo; Klimes-Dougan, Bonnie; Kochunov, Peter; Krug, Axel; Lagopoulos, Jim; Lee, Renick; Lett, Tristram A; Li, Meng; MacMaster, Frank P; Martin, Nicholas G; McIntosh, Andrew M; McLellan, Quinn; Meinert, Susanne; Nenadi?, Igor; Osipov, Evgeny; Penninx, Brenda W J H; Portella, Maria J; Repple, Jonathan; Roos, Annerine; Sacchet, Matthew D; Sämann, Philipp G; Schnell, Knut; Shen, Xueyi; Sim, Kang; Stein, Dan J; van Tol, Marie-Jose; Tomyshev, Alexander S; Tozzi, Leonardo; Veer, Ilya M; Vermeiren, Robert; Vives-Gilabert, Yolanda; Walter, Henrik; Walter, Martin; van der Wee, Nic J A; van der Werff, Steven J A; Schreiner, Melinda Westlund; Whalley, Heather C; Wright, Margaret J; Yang, Tony T; Zhu, Alyssa; Veltman, Dick J; Thompson, Paul M; Jahanshad, Neda; Schmaal, Lianne |
Molecular psychiatry. |
31471575 |
2019 Aug 30; |
| A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS. |
McMahon, Mary; Contreras, Adrian; Holm, Mikael; Uechi, Tamayo; Forester, Craig M; Pang, Xiaming; Jackson, Cody; Calvert, Meredith E; Chen, Bin; Quigley, David A; Luk, John M; Kelley, R Kate; Gordan, John D; Gill, Ryan M; Blanchard, Scott C; Ruggero, Davide |
eLife. |
31478838 |
2019 09 03; |
| Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data. |
Hicks, Allison L; Wheeler, Nicole; Sánchez-Busó, Leonor; Rakeman, Jennifer L; Harris, Simon R; Grad, Yonatan H |
PLoS computational biology. |
31479500 |
2019 09; |
| Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics. |
Köhler, Sebastian; Øien, N Christine; Buske, Orion J; Groza, Tudor; Jacobsen, Julius O B; McNamara, Craig; Vasilevsky, Nicole; Carmody, Leigh C; Gourdine, J P; Gargano, Michael; McMurry, Julie A; Danis, Daniel; Mungall, Christopher J; Smedley, Damian; Haendel, Melissa; Robinson, Peter N |
Current protocols in human genetics. |
31479590 |
2019 Sep; |
| A privacy-preserving distributed filtering framework for NLP artifacts. |
Sadat, Md Nazmus; Aziz, Md Momin Al; Mohammed, Noman; Pakhomov, Serguei; Liu, Hongfang; Jiang, Xiaoqian |
BMC medical informatics and decision making. |
31493797 |
2019 Sep 07; |
| Low-Dimensional Density Ratio Estimation for Covariate Shift Correction. |
Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun |
Proceedings of machine learning research. |
31497776 |
2019 Apr; |
| Data-Driven Approach to Multiple-Source Domain Adaptation. |
Stojanov, Petar; Gong, Mingming; Carbonell, Jaime G; Zhang, Kun |
Proceedings of machine learning research. |
31497777 |
2019 Apr; |
| Causal Discovery and Forecasting in Nonstationary Environments with State-Space Models. |
Huang, Biwei; Zhang, Kun; Gong, Mingming; Glymour, Clark |
Proceedings of machine learning research. |
31497778 |
2019 Jun; |
| dbgap2x: an R package to explore and extract data from the database of Genotypes and Phenotypes (dbGaP). |
Versmée, Grégoire; Versmée, Laura; Dusenne, Mikaël; Jalali, Niloofar; Avillach, Paul |
Bioinformatics (Oxford, England) |
31504194 |
2020 02 15 |
| Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts. |
Tsueng, Ginger; Nanis, Max; Fouquier, Jennifer T; Mayers, Michael; Good, Benjamin M; Su, Andrew I |
Bioinformatics (Oxford, England). |
31504205 |
2019 Sep 03; |
| The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment. |
Zhang, Yi; Manjunath, Mohith; Yan, Jialu; Baur, Brittany A; Zhang, Shilu; Roy, Sushmita; Song, Jun S |
Frontiers in genetics. |
31507631 |
2019; |
| Multifaceted protein-protein interaction prediction based on Siamese residual RCNN. |
Chen, Muhao; Ju, Chelsea J-T; Zhou, Guangyu; Chen, Xuelu; Zhang, Tianran; Chang, Kai-Wei; Zaniolo, Carlo; Wang, Wei |
Bioinformatics (Oxford, England). |
31510705 |
2019 07 15; |
| Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes. |
Xue, Yifan; Cooper, Gregory; Cai, Chunhui; Lu, Songjian; Hu, Baoli; Ma, Xiaojun; Lu, Xinghua |
Scientific reports. |
31519988 |
2019 Sep 13; |
| Amalgamating evidence of dynamics. |
Danks, David; Plis, Sergey |
Synthese. |
31527987 |
2019 Aug; |
| Predicting Dynamic Embedding Trajectory in Temporal Interaction Networks. |
Kumar, Srijan; Zhang, Xikun; Leskovec, Jure |
KDD : proceedings. International Conference on Knowledge Discovery & Data Mining. |
31538030 |
2019 Aug; |
| Inferring Multidimensional Rates of Aging from Cross-Sectional Data. |
Pierson, Emma; Koh, Pang Wei; Hashimoto, Tatsunori; Koller, Daphne; Leskovec, Jure; Eriksson, Nicholas; Liang, Percy |
Proceedings of machine learning research. |
31538144 |
2019 Apr; |
| Predicting pregnancy using large-scale data from a women's health tracking mobile application. |
Liu, Bo; Shi, Shuyang; Wu, Yongshang; Thomas, Daniel; Symul, Laura; Pierson, Emma; Leskovec, Jure |
Proceedings of the ... International World-Wide Web Conference. International WWW Conference. |
31538145 |
2019 May; |
| Evaluating FAIR maturity through a scalable, automated, community-governed framework. |
Wilkinson, Mark D; Dumontier, Michel; Sansone, Susanna-Assunta; Bonino da Silva Santos, Luiz Olavo; Prieto, Mario; Batista, Dominique; McQuilton, Peter; Kuhn, Tobias; Rocca-Serra, Philippe; Crosas, Merc?; Schultes, Erik |
Scientific data. |
31541130 |
2019 09 20; |
| The case for openness in engineering research. |
Berg, Devin R; Niemeyer, Kyle E |
F1000Research. |
31543946 |
2018; |
| A fast divide-and-conquer sparse Cox regression. |
Wang, Yan; Hong, Chuan; Palmer, Nathan; Di, Qian; Schwartz, Joel; Kohane, Isaac; Cai, Tianxi |
Biostatistics (Oxford, England) |
31545341 |
2021 Apr 10 |
| Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation. |
Guerrero, Jose M; Adluru, Nagesh; Bendlin, Barbara B; Goldsmith, H Hill; Schaefer, Stacey M; Davidson, Richard J; Kecskemeti, Steven R; Zhang, Hui; Alexander, Andrew L |
PloS one |
31553719 |
2019 |
| Learning Disentangled Semantic Representation for Domain Adaptation. |
Cai, Ruichu; Li, Zijian; Wei, Pengfei; Qiao, Jie; Zhang, Kun; Hao, Zhifeng |
IJCAI : proceedings of the conference. |
31555039 |
2019 Aug; |
| Domain Generalization via Multidomain Discriminant Analysis. |
Hu, Shoubo; Zhang, Kun; Chen, Zhitang; Chan, Laiwan |
Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence. |
31555066 |
2019 Jul; |
| The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data. |
Kim, Hosung; Irimia, Andrei; Hobel, Samuel M; Pogosyan, Mher; Tang, Haoteng; Petrosyan, Petros; Blanco, Rita Esquivel Castelo; Duffy, Ben A; Zhao, Lu; Crawford, Karen L; Liew, Sook-Lei; Clark, Kristi; Law, Meng; Mukherjee, Pratik; Manley, Geoffrey T; Van Horn, John D; Toga, Arthur W |
Frontiers in neuroinformatics |
31555116 |
2019 |
| Chalcones as a basis for computer-aided drug design: innovative approaches to tackle malaria. |
Lima, Marilia Nn; Neves, Bruno J; Cassiano, Gustavo C; Gomes, Marcelo N; Tomaz, Kaira Cp; Ferreira, Leticia T; Tavella, Tatyana A; Calit, Juliana; Bargieri, Daniel Y; Muratov, Eugene N; Costa, Fabio Tm; Andrade, Carolina Horta |
Future medicinal chemistry. |
31556721 |
2019 10; |
| Safe Expectations: Current State and Future Directions for Medication Safety in Pregnancy Research. |
Wood, Mollie E; Andrade, Susan E; Toh, Sengwee |
Clinical therapeutics. |
31563392 |
2019 Sep 25; |
| Robot-Enabled Support of Daily Activities in Smart Home Environments. |
Wilson, Garrett; Pereyda, Christopher; Raghunath, Nisha; de la Cruz, Gabriel; Goel, Shivam; Nesaei, Sepehr; Minor, Bryan; Schmitter-Edgecombe, Maureen; Taylor, Matthew E; Cook, Diane J |
Cognitive systems research. |
31565029 |
2019 May; |
| Training Complex Models with Multi-Task Weak Supervision. |
Ratner, Alexander; Hancock, Braden; Dunnmon, Jared; Sala, Frederic; Pandey, Shreyash; Ré, Christopher |
Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence. |
31565535 |
2019 Jan-Feb; |
| Sample size considerations for comparing dynamic treatment regimens in a sequential multiple-assignment randomized trial with a continuous longitudinal outcome. |
Seewald, Nicholas J; Kidwell, Kelley M; Nahum-Shani, Inbal; Wu, Tianshuang; McKay, James R; Almirall, Daniel |
Statistical methods in medical research. |
31571526 |
2019 Oct 01; |
| Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. |
Ignjatovic, Vera; Geyer, Philipp E; Palaniappan, Krishnan K; Chaaban, Jessica E; Omenn, Gilbert S; Baker, Mark S; Deutsch, Eric W; Schwenk, Jochen M |
Journal of proteome research. |
31573204 |
2019 Dec 06; |
| Medical device surveillance with electronic health records. |
Callahan, Alison; Fries, Jason A; Ré, Christopher; Huddleston 3rd, James I; Giori, Nicholas J; Delp, Scott; Shah, Nigam H |
NPJ digital medicine. |
31583282 |
2019; |
| Noninvasive Detection of Colorectal Carcinomas Using Serum Protein Biomarkers. |
Ivancic, Melanie M; Megna, Bryant W; Sverchkov, Yuriy; Craven, Mark; Reichelderfer, Mark; Pickhardt, Perry J; Sussman, Michael R; Kennedy, Gregory D |
The Journal of surgical research. |
31586890 |
2020 02; |
| Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations. |
Ong, Carmichael F; Geijtenbeek, Thomas; Hicks, Jennifer L; Delp, Scott L |
PLoS computational biology. |
31589597 |
2019 10; |
| A Logical Model of Homology for Comparative Biology. |
Mabee, Paula M; Balhoff, James P; Dahdul, Wasila M; Lapp, Hilmar; Mungall, Christopher J; Vision, Todd J |
Systematic biology |
31596473 |
2020 03 01 |
| An Interactive Visualization Tool for HL7 FHIR Specification Browsing and Profiling. |
Hong, Na; Wang, Kui; Wu, Sizhu; Shen, Feichen; Yao, Lixia; Jiang, Guoqian |
Journal of healthcare informatics research. |
31598581 |
2019 Sep; |
| Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. |
Deutsch, Eric W; Lane, Lydie; Overall, Christopher M; Bandeira, Nuno; Baker, Mark S; Pineau, Charles; Moritz, Robert L; Corrales, Fernando; Orchard, Sandra; Van Eyk, Jennifer E; Paik, Young-Ki; Weintraub, Susan T; Vandenbrouck, Yves; Omenn, Gilbert S |
Journal of proteome research. |
31599596 |
2019 Dec 06; |
| Transcriptional regulatory model of fibrosis progression in the human lung. |
McDonough, John E; Ahangari, Farida; Li, Qin; Jain, Siddhartha; Verleden, Stijn E; Herazo-Maya, Jose; Vukmirovic, Milica; DeIuliis, Giuseppe; Tzouvelekis, Argyrios; Tanabe, Naoya; Chu, Fanny; Yan, Xiting; Verschakelen, Johny; Homer, Robert J; Manatakis, Dimitris V; Zhang, Junke; Ding, Jun; Maes, Karen; De Sadeleer, Laurens; Vos, Robin; Neyrinck, Arne; Benos, Panayiotis V; Bar-Joseph, Ziv; Tantin, Dean; Hogg, James C; Vanaudenaerde, Bart M; Wuyts, Wim A; Kaminski, Naftali |
JCI insight. |
31600171 |
2019 Nov 14; |
| Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways. |
Horgusluoglu-Moloch, Emrin; Risacher, Shannon L; Crane, Paul K; Hibar, Derrek; Thompson, Paul M; Saykin, Andrew J; Nho, Kwangsik; Alzheimer?s Disease Neuroimaging Initiative (ADNI) |
Scientific reports. |
31601890 |
2019 Oct 10; |
| DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark. |
Linderman, Michael D; Chia, Davin; Wallace, Forrest; Nothaft, Frank A |
BMC bioinformatics. |
31604420 |
2019 Oct 11; |
| High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. |
Liao, Katherine P; Sun, Jiehuan; Cai, Tianrun A; Link, Nicholas; Hong, Chuan; Huang, Jie; Huffman, Jennifer E; Gronsbell, Jessica; Zhang, Yichi; Ho, Yuk-Lam; Castro, Victor; Gainer, Vivian; Murphy, Shawn N; O'Donnell, Christopher J; Gaziano, J Michael; Cho, Kelly; Szolovits, Peter; Kohane, Isaac S; Yu, Sheng; Cai, Tianxi |
Journal of the American Medical Informatics Association : JAMIA. |
31613361 |
2019 11 01; |
| An overlapping pattern of cerebral cortical thinning is associated with both positive symptoms and aggression in schizophrenia via the ENIGMA consortium. |
Wong, Ting Yat; Radua, Joaquim; Pomarol-Clotet, Edith; Salvador, Raymond; Albajes-Eizagirre, Anton; Solanes, Aleix; Canales-Rodriguez, Erick J; Guerrero-Pedraza, Amalia; Sarro, Salvador; Kircher, Tilo; Nenadic, Igor; Krug, Axel; Grotegerd, Dominik; Dannlowski, Udo; Borgwardt, Stefan; Riecher-Rössler, Anita; Schmidt, Andre; Andreou, Christina; Huber, Christian G; Turner, Jessica; Calhoun, Vince; Jiang, Wenhao; Clark, Sarah; Walton, Esther; Spalletta, Gianfranco; Banaj, Nerisa; Piras, Fabrizio; Ciullo, Valentina; Vecchio, Daniela; Lebedeva, Irina; Tomyshev, Alexander S; Kaleda, Vasily; Klushnik, Tatyana; Filho, Geraldo Busatto; Zanetti, Marcus Vinicius; Serpa, Mauricio Henriques; Penteado Rosa, Pedro Gomes; Hashimoto, Ryota; Fukunaga, Masaki; Richter, Anja; Krämer, Bernd; Gruber, Oliver; Voineskos, Aristotle N; Dickie, Erin W; Tomecek, David; Skoch, Antonin; Spaniel, Filip; Hoschl, Cyril; Bertolino, Alessandro; Bonvino, Aurora; Di Giorgio, Annabella; Holleran, Laurena; Ciufolini, Simone; Marques, Tiago Reis; Dazzan, Paola; Murray, Robin; Lamsma, Jelle; Cahn, Wiepke; van Haren, Neeltje; Díaz-Zuluaga, Ana M; Pineda-Zapata, Julián A; Vargas, Cristian; López-Jaramillo, Carlos; van Erp, Theo G M; Gur, Ruben C; Nickl-Jockschat, Thomas |
Psychological medicine. |
31615588 |
2020 09; |
| Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia. |
Paik, Hyojung; Kan, Matthew J; Rappoport, Nadav; Hadley, Dexter; Sirota, Marina; Chen, Bin; Manber, Udi; Cho, Seong Beom; Butte, Atul J |
Scientific data. |
31615985 |
2019 10 15; |
| Systemic Mitochondrial Oxidative Phosphorylation Protein Levels Correlate with Neuroimaging Measures in Chronically HIV-Infected Individuals. |
Kallianpur, Kalpana J; Walker, Maegen; Gerschenson, Mariana; Shikuma, Cecilia M; Gangcuangco, Louie Mar A; Kohorn, Lindsay; Libutti, Daniel E; Nir, Talia M; Jahanshad, Neda; Thompson, Paul M; Paul, Robert |
AIDS research and human retroviruses. |
31617381 |
2020 01; |
| Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. |
Hong, Na; Wen, Andrew; Stone, Daniel J; Tsuji, Shintaro; Kingsbury, Paul R; Rasmussen, Luke V; Pacheco, Jennifer A; Adekkanattu, Prakash; Wang, Fei; Luo, Yuan; Pathak, Jyotishman; Liu, Hongfang; Jiang, Guoqian |
Journal of biomedical informatics. |
31622801 |
2019 Nov; |
| Hierarchical associations of alcohol use disorder symptoms in late adolescence with markers during early adolescence. |
Kühn, Simone; Lisofsky, Nina; Banaschewski, Tobias; Barker, Gareth; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Brühl, Rüdiger; Quinlan, Erin Burke; Desrivières, Sylvane; Flor, Herta; Grigis, Antoine; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Walter, Henrik; Whelan, Robert; Schumann, Gunter; Gallinat, Jürgen; IMAGEN Consortium |
Addictive behaviors. |
31622946 |
2020 01; |
| Investigating genetic links between grapheme-colour synaesthesia and neuropsychiatric traits. |
Tilot, Amanda K; Vino, Arianna; Kucera, Katerina S; Carmichael, Duncan A; van den Heuvel, Loes; den Hoed, Joery; Sidoroff-Dorso, Anton V; Campbell, Archie; Porteous, David J; St Pourcain, Beate; van Leeuwen, Tessa M; Ward, Jamie; Rouw, Romke; Simner, Julia; Fisher, Simon E |
Philosophical transactions of the Royal Society of London. Series B, Biological sciences. |
31630655 |
2019 12 09; |
| Effects of ketamine and midazolam on resting state connectivity and comparison with ENIGMA connectivity deficit patterns in schizophrenia. |
Adhikari, Bhim M; Dukart, Juergen; Hipp, Joerg F; Forsyth, Anna; McMillan, Rebecca; Muthukumaraswamy, Suresh D; Ryan, Meghann C; Hong, L Elliot; Eickhoff, Simon B; Jahandshad, Neda; Thompson, Paul M; Rowland, Laura M; Kochunov, Peter |
Human brain mapping. |
31633254 |
2020 Feb 15; |
| Behavioral problems in perinatally HIV-infected young children with early antiretroviral therapy and HIV-exposed uninfected young children: prevalence and associated factors. |
Jantarabenjakul, Watsamon; Chonchaiya, Weerasak; Puthanakit, Thanyawee; Anugulruengkitt, Suvaporn; Theerawit, Tuangtip; Payapanon, Jesdapron; Sophonphan, Jiratchaya; Veeravigrom, Montida; Jahanshad, Neda; Thompson, Paul M; Ananworanich, Jintanat; Malee, Kathleen; Pancharoen, Chitsanu; DOET study |
AIDS care. |
31635484 |
2020 04; |
| SMARTS: the social media-based addiction recovery and intervention targeting server. |
Jha, Deeptanshu; Singh, Rahul |
Bioinformatics (Oxford, England) |
31647520 |
2019 Oct 24 |
| TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome. |
Garlid, Anders O; Schaffer, Calvin T; Kim, Jaewoo; Bhatt, Hirsh; Guevara-Gonzalez, Vladimir; Ping, Peipei |
Gene. |
31647997 |
2020 Feb 05; |
| Effects of initial planning on task execution performance of older adults: A naturalistic assessment paradigm. |
Brown, Katelyn D; Schmitter-Edgecombe, Maureen |
Journal of clinical and experimental neuropsychology |
31658865 |
2020 02 |
| A Novel Machine Learning Model Developed to Assist in Patient Selection for Outpatient Total Shoulder Arthroplasty. |
Biron, Dustin R; Sinha, Ishan; Kleiner, Justin E; Aluthge, Dilum P; Goodman, Avi D; Sarkar, I Neil; Cohen, Eric; Daniels, Alan H |
The Journal of the American Academy of Orthopaedic Surgeons. |
31663914 |
2019 Oct 24; |
| Association of Copy Number Variation of the 15q11.2 BP1-BP2 Region With Cortical and Subcortical Morphology and Cognition. |
Writing Committee for the ENIGMA-CNV Working Group; van der Meer, Dennis; Sønderby, Ida E; Kaufmann, Tobias; Walters, G Bragi; Abdellaoui, Abdel; Ames, David; Amunts, Katrin; Andersson, Micael; Armstrong, Nicola J; Bernard, Manon; Blackburn, Nicholas B; Blangero, John; Boomsma, Dorret I; Brodaty, Henry; Brouwer, Rachel M; Bülow, Robin; Cahn, Wiepke; Calhoun, Vince D; Caspers, Svenja; Cavalleri, Gianpiero L; Ching, Christopher R K; Cichon, Sven; Ciufolini, Simone; Corvin, Aiden; Crespo-Facorro, Benedicto; Curran, Joanne E; Dalvie, Shareefa; Dazzan, Paola; de Geus, Eco J C; de Zubicaray, Greig I; de Zwarte, Sonja M C; Delanty, Norman; den Braber, Anouk; Desrivieres, Sylvane; Di Forti, Marta; Doherty, Joanne L; Donohoe, Gary; Ehrlich, Stefan; Eising, Else; Espeseth, Thomas; Fisher, Simon E; Fladby, Tormod; Frei, Oleksandr; Frouin, Vincent; Fukunaga, Masaki; Gareau, Thomas; Glahn, David C; Grabe, Hans J; Groenewold, Nynke A; Gústafsson, Ómar; Haavik, Jan; Haberg, Asta K; Hashimoto, Ryota; Hehir-Kwa, Jayne Y; Hibar, Derrek P; Hillegers, Manon H J; Hoffmann, Per; Holleran, Laurena; Hottenga, Jouke-Jan; Hulshoff Pol, Hilleke E; Ikeda, Masashi; Jacquemont, Sébastien; Jahanshad, Neda; Jockwitz, Christiane; Johansson, Stefan; Jönsson, Erik G; Kikuchi, Masataka; Knowles, Emma E M; Kwok, John B; Le Hellard, Stephanie; Linden, David E J; Liu, Jingyu; Lundervold, Arvid; Lundervold, Astri J; Martin, Nicholas G; Mather, Karen A; Mathias, Samuel R; McMahon, Katie L; McRae, Allan F; Medland, Sarah E; Moberget, Torgeir; Moreau, Clara; Morris, Derek W; Mühleisen, Thomas W; Murray, Robin M; Nordvik, Jan E; Nyberg, Lars; Olde Loohuis, Loes M; Ophoff, Roel A; Owen, Michael J; Paus, Tomas; Pausova, Zdenka; Peralta, Juan M; Pike, Bruce; Prieto, Carlos; Quinlan, Erin Burke; Reinbold, Céline S; Reis Marques, Tiago; Rucker, James J H; Sachdev, Perminder S; Sando, Sigrid B; Schofield, Peter R; Schork, Andrew J; Schumann, Gunter; Shin, Jean; Shumskaya, Elena; Silva, Ana I; Sisodiya, Sanjay M; Steen, Vidar M; Stein, Dan J; Strike, Lachlan T; Tamnes, Christian K; Teumer, Alexander; Thalamuthu, Anbupalam; Tordesillas-Gutiérrez, Diana; Uhlmann, Anne; Úlfarsson, Magnús Ö; van 't Ent, Dennis; van den Bree, Marianne B M; Vassos, Evangelos; Wen, Wei; Wittfeld, Katharina; Wright, Margaret J; Zayats, Tetyana; Dale, Anders M; Djurovic, Srdjan; Agartz, Ingrid; Westlye, Lars T; Stefánsson, Hreinn; Stefánsson, Kári; Thompson, Paul M; Andreassen, Ole A |
JAMA psychiatry |
31665216 |
2020 04 01 |
| Risk factors for development of aminoglycoside resistance among gram-negative rods. |
Richter, Stefan E; Miller, Loren; Needleman, Jack; Uslan, Daniel Z; Bell, Douglas; Watson, Karol; Humphries, Romney; McKinnell, James A |
American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists. |
31665763 |
2019 10 30; |
| Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. |
Postema, Merel C; van Rooij, Daan; Anagnostou, Evdokia; Arango, Celso; Auzias, Guillaume; Behrmann, Marlene; Filho, Geraldo Busatto; Calderoni, Sara; Calvo, Rosa; Daly, Eileen; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Duran, Fabio Luis S; Durston, Sarah; Ecker, Christine; Ehrlich, Stefan; Fair, Damien; Fedor, Jennifer; Feng, Xin; Fitzgerald, Jackie; Floris, Dorothea L; Freitag, Christine M; Gallagher, Louise; Glahn, David C; Gori, Ilaria; Haar, Shlomi; Hoekstra, Liesbeth; Jahanshad, Neda; Jalbrzikowski, Maria; Janssen, Joost; King, Joseph A; Kong, Xiang Zhen; Lazaro, Luisa; Lerch, Jason P; Luna, Beatriz; Martinho, Mauricio M; McGrath, Jane; Medland, Sarah E; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; O'Hearn, Kirsten; Oranje, Bob; Parellada, Mara; Puig, Olga; Retico, Alessandra; Rosa, Pedro; Rubia, Katya; Shook, Devon; Taylor, Margot J; Tosetti, Michela; Wallace, Gregory L; Zhou, Fengfeng; Thompson, Paul M; Fisher, Simon E; Buitelaar, Jan K; Francks, Clyde |
Nature communications |
31673008 |
2019 10 31 |
| Identifying biological markers for improved precision medicine in psychiatry. |
Quinlan, Erin Burke; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Bromberg, Uli; Büchel, Christian; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Heinz, Andreas; Brühl, Rüdiger; Martinot, Jean-Luc; Paillère Martinot, Marie-Laure; Nees, Frauke; Orfanos, Dimitri Papadopoulos; Paus, Tomá?; Poustka, Luise; Hohmann, Sarah; Smolka, Michael N; Fröhner, Juliane H; Walter, Henrik; Whelan, Robert; Schumann, Gunter; IMAGEN Consortium |
Molecular psychiatry. |
31676814 |
2020 Feb; |
| FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. |
Clarke, Daniel J B; Wang, Lily; Jones, Alex; Wojciechowicz, Megan L; Torre, Denis; Jagodnik, Kathleen M; Jenkins, Sherry L; McQuilton, Peter; Flamholz, Zachary; Silverstein, Moshe C; Schilder, Brian M; Robasky, Kimberly; Castillo, Claris; Idaszak, Ray; Ahalt, Stanley C; Williams, Jason; Schurer, Stephan; Cooper, Daniel J; de Miranda Azevedo, Ricardo; Klenk, Juergen A; Haendel, Melissa A; Nedzel, Jared; Avillach, Paul; Shimoyama, Mary E; Harris, Rayna M; Gamble, Meredith; Poten, Rudy; Charbonneau, Amanda L; Larkin, Jennie; Brown, C Titus; Bonazzi, Vivien R; Dumontier, Michel J; Sansone, Susanna-Assunta; Ma'ayan, Avi |
Cell systems |
31677972 |
2019 11 27 |
| The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. |
Deutsch, Eric W; Bandeira, Nuno; Sharma, Vagisha; Perez-Riverol, Yasset; Carver, Jeremy J; Kundu, Deepti J; García-Seisdedos, David; Jarnuczak, Andrew F; Hewapathirana, Suresh; Pullman, Benjamin S; Wertz, Julie; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; Hermjakob, Henning; MacLean, Brendan; MacCoss, Michael J; Zhu, Yunping; Ishihama, Yasushi; Vizcaíno, Juan A |
Nucleic acids research. |
31686107 |
2020 Jan 08; |
| LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. |
Stathias, Vasileios; Turner, John; Koleti, Amar; Vidovic, Dusica; Cooper, Daniel; Fazel-Najafabadi, Mehdi; Pilarczyk, Marcin; Terryn, Raymond; Chung, Caty; Umeano, Afoma; Clarke, Daniel J B; Lachmann, Alexander; Evangelista, John Erol; Ma'ayan, Avi; Medvedovic, Mario; Schürer, Stephan C |
Nucleic acids research. |
31701147 |
2020 01 08; |
| Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data. |
Pomaznoy, Mikhail; Sethi, Ashu; Greenbaum, Jason; Peters, Bjoern |
Scientific reports. |
31704962 |
2019 Nov 08; |
| Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. |
Khatib, Firas; Desfosses, Ambroise; Foldit Players; Koepnick, Brian; Flatten, Jeff; Popovi?, Zoran; Baker, David; Cooper, Seth; Gutsche, Irina; Horowitz, Scott |
PLoS biology. |
31714936 |
2019 11; |
| Interaction effect of alcohol consumption and Alzheimer disease polygenic risk score on the brain cortical thickness of cognitively normal subjects. |
Matloff, William J; Zhao, Lu; Ning, Kaida; Conti, David V; Toga, Arthur W |
Alcohol (Fayetteville, N.Y.). |
31734309 |
2020 Jun; |
| Nanopore native RNA sequencing of a human poly(A) transcriptome. |
Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston |
Nature methods |
31740818 |
2019 12 |
| When can Multi-Site Datasets be Pooled for Regression? Hypothesis Tests, ?2-consistency and Neuroscience Applications. |
Zhou, Hao Henry; Zhang, Yilin; Ithapu, Vamsi K; Johnson, Sterling C; Wahba, Grace; Singh, Vikas |
Proceedings of machine learning research. |
31742253 |
2017 Aug; |
| Genotype-dependent epigenetic regulation of DLGAP2 in alcohol use and dependence. |
Meng, Weida; Sjöholm, Louise K; Kononenko, Olga; Tay, Nicole; Zhang, Dandan; Sarkisyan, Daniil; Geske, Jennifer R; Ing, Alex; Qiu, Wenqing; Watanabe, Hiroyuki; Almamoun, Radwa; Frieling, Helge; Bleich, Stefan; Cui, Donghong; Biernacka, Joanna M; Mayfield, R Dayne; Dang, Yongjun; Karpyak, Victor M; Schumann, Gunter; IMAGEN Consortium; Bakalkin, Georgy; Ekström, Tomas J; Rüegg, Joelle; Liu, Yun |
Molecular psychiatry |
31745236 |
2021 08 |
| Subcortical surface morphometry in substance dependence: An ENIGMA addiction working group study. |
Chye, Yann; Mackey, Scott; Gutman, Boris A; Ching, Christopher R K; Batalla, Albert; Blaine, Sara; Brooks, Samantha; Caparelli, Elisabeth C; Cousijn, Janna; Dagher, Alain; Foxe, John J; Goudriaan, Anna E; Hester, Robert; Hutchison, Kent; Jahanshad, Neda; Kaag, Anne M; Korucuoglu, Ozlem; Li, Chiang-Shan R; London, Edythe D; Lorenzetti, Valentina; Luijten, Maartje; Martin-Santos, Rocio; Meda, Shashwath A; Momenan, Reza; Morales, Angelica; Orr, Catherine; Paulus, Martin P; Pearlson, Godfrey; Reneman, Liesbeth; Schmaal, Lianne; Sinha, Rajita; Solowij, Nadia; Stein, Dan J; Stein, Elliot A; Tang, Deborah; Uhlmann, Anne; van Holst, Ruth; Veltman, Dick J; Verdejo-Garcia, Antonio; Wiers, Reinout W; Yücel, Murat; Thompson, Paul M; Conrod, Patricia; Garavan, Hugh |
Addiction biology. |
31746534 |
2019 Nov 20; |
| Sympathetic activity contributes to the fMRI signal. |
Özbay, Pinar Senay; Chang, Catie; Picchioni, Dante; Mandelkow, Hendrik; Chappel-Farley, Miranda Grace; van Gelderen, Peter; de Zwart, Jacco Adrianus; Duyn, Jeff |
Communications biology. |
31754651 |
2019; |
| Designing Videogames to Crowdsource Accelerometer Data Annotation for Activity Recognition Research. |
Ponnada, Aditya; Cooper, Seth; Thapa-Chhetry, Binod; Miller, Josh Aaron; John, Dinesh; Intille, Stephen |
Proceedings of the ... Annual Symposium on Computer-Human Interaction in Play. ACM SIGCHI Annual Symposium on Computer-Human Interaction in Play. |
31768505 |
2019 Oct; |
| Snorkel DryBell: A Case Study in Deploying Weak Supervision at Industrial Scale. |
Bach, Stephen H; Rodriguez, Daniel; Liu, Yintao; Luo, Chong; Shao, Haidong; Xia, Cassandra; Sen, Souvik; Ratner, Alex; Hancock, Braden; Alborzi, Houman; Kuchhal, Rahul; Ré, Chris; Malkin, Rob |
Proceedings. ACM-Sigmod International Conference on Management of Data. |
31777414 |
2019 Jun-Jul; |
| Snuba: Automating Weak Supervision to Label Training Data. |
Varma, Paroma; Ré, Christopher |
Proceedings of the VLDB Endowment. International Conference on Very Large Data Bases. |
31777681 |
2018 Nov; |
| Low-Precision Random Fourier Features for Memory-Constrained Kernel Approximation. |
Zhang, Jian; May, Avner; Dao, Tri; Ré, Christopher |
Proceedings of machine learning research. |
31777846 |
2019 Apr; |
| Learning Fast Algorithms for Linear Transforms Using Butterfly Factorizations. |
Dao, Tri; Gu, Albert; Eichhorn, Matthew; Rudra, Atri; Ré, Christopher |
Proceedings of machine learning research. |
31777847 |
2019 Jun; |
| A Kernel Theory of Modern Data Augmentation. |
Dao, Tri; Gu, Albert; Ratner, Alexander J; Smith, Virginia; De Sa, Christopher; Ré, Christopher |
Proceedings of machine learning research. |
31777848 |
2019 Jun; |
| Expertise and Engagement: Re-Designing Citizen Science Games With Players' Minds in Mind. |
Miller, Josh Aaron; Narayan, Uttkarsh; Hantsbarger, Matthew; Cooper, Seth; El-Nasr, Magy Seif |
FDG : proceedings of the International Conference on Foundations of Digital Games. International Conference on the Foundations of Digital Games. |
31788674 |
2019 Aug; |
| From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer. |
Tao, Yifeng; Cai, Chunhui; Cohen, William W; Lu, Xinghua |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
31797588 |
2020; |
| Navigating ethical quandaries with the privacy dilemma of biomedical datasets. |
Gürsoy, Gamze; Doerr, Megan; Wilbanks, John; Wagner, Jennifer K; Tang, Haixu; Brenner, Steven E |
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. |
31797643 |
2020; |
| Recursive Feature Elimination by Sensitivity Testing. |
Escanilla, Nicholas Sean; Hellerstein, Lisa; Kleiman, Ross; Kuang, Zhaobin; Shull, James D; Page, David |
Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications. |
31799516 |
2018 Dec; |
| Reactome and ORCID-fine-grained credit attribution for community curation. |
Viteri, Guilherme; Matthews, Lisa; Varusai, Thawfeek; Gillespie, Marc; Milacic, Marija; Cook, Justin; Weiser, Joel; Shorser, Solomon; Sidiropoulos, Konstantinos; Fabregat, Antonio; Haw, Robin; Wu, Guanming; Stein, Lincoln; D'Eustachio, Peter; Hermjakob, Henning |
Database : the journal of biological databases and curation. |
31802127 |
2019 01 01; |
| Learning the Structure of a Nonstationary Vector Autoregression. |
Malinsky, Daniel; Spirtes, Peter |
Proceedings of machine learning research. |
31803862 |
2019 Apr; |
| Privacy-protecting estimation of adjusted risk ratios using modified Poisson regression in multi-center studies. |
Shu, Di; Young, Jessica G; Toh, Sengwee |
BMC medical research methodology. |
31805872 |
2019 Dec 05; |
| Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group. |
Jia, Tianye; Chu, Congying; Liu, Yun; van Dongen, Jenny; Papastergios, Evangelos; Armstrong, Nicola J; Bastin, Mark E; Carrillo-Roa, Tania; den Braber, Anouk; Harris, Mathew; Jansen, Rick; Liu, Jingyu; Luciano, Michelle; Ori, Anil P S; Roiz Santiañez, Roberto; Ruggeri, Barbara; Sarkisyan, Daniil; Shin, Jean; Sungeun, Kim; Tordesillas Gutiérrez, Diana; Van't Ent, Dennis; Ames, David; Artiges, Eric; Bakalkin, Georgy; Banaschewski, Tobias; Bokde, Arun L W; Brodaty, Henry; Bromberg, Uli; Brouwer, Rachel; Büchel, Christian; Burke Quinlan, Erin; Cahn, Wiepke; de Zubicaray, Greig I; Ehrlich, Stefan; Ekström, Tomas J; Flor, Herta; Fröhner, Juliane H; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Heinz, Andreas; Hoare, Jacqueline; Ittermann, Bernd; Jahanshad, Neda; Jiang, Jiyang; Kwok, John B; Martin, Nicholas G; Martinot, Jean-Luc; Mather, Karen A; McMahon, Katie L; McRae, Allan F; Nees, Frauke; Papadopoulos Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Sämann, Philipp G; Schofield, Peter R; Smolka, Michael N; Stein, Dan J; Strike, Lachlan T; Teeuw, Jalmar; Thalamuthu, Anbupalam; Trollor, Julian; Walter, Henrik; Wardlaw, Joanna M; Wen, Wei; Whelan, Robert; Apostolova, Liana G; Binder, Elisabeth B; Boomsma, Dorret I; Calhoun, Vince; Crespo-Facorro, Benedicto; Deary, Ian J; Hulshoff Pol, Hilleke; Ophoff, Roel A; Pausova, Zdenka; Sachdev, Perminder S; Saykin, Andrew; Wright, Margaret J; Thompson, Paul M; Schumann, Gunter; Desrivières, Sylvane |
Molecular psychiatry. |
31811260 |
2019 Dec 06; |
| Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets. |
Morrow, Alyssa Kramer; He, George Zhixuan; Nothaft, Frank Austin; Tu, Eric Tongching; Paschall, Justin; Yosef, Nir; Joseph, Anthony Douglas |
Cell systems. |
31812694 |
2019 12 18; |
| Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. |
Barry, Christopher; Schmitz, Matthew T; Argus, Cara; Bolin, Jennifer M; Probasco, Mitchell D; Leng, Ning; Duffin, Bret M; Steill, John; Swanson, Scott; McIntosh, Brian E; Stewart, Ron; Kendziorski, Christina; Thomson, James A; Bacher, Rhonda |
PLoS computational biology. |
31815944 |
2019 12; |
| Cortical Surfaces Mediate the Relationship Between Polygenic Scores for Intelligence and General Intelligence. |
Lett, Tristram A; Vogel, Bob O; Ripke, Stephan; Wackerhagen, Carolin; Erk, Susanne; Awasthi, Swapnil; Trubetskoy, Vassily; Brandl, Eva J; Mohnke, Sebastian; Veer, Ilya M; Nöthen, Markus M; Rietschel, Marcella; Degenhardt, Franziska; Romanczuk-Seiferth, Nina; Witt, Stephanie H; Banaschewski, Tobias; Bokde, Arun L W; Büchel, Christian; Quinlan, Erin B; Desrivières, Sylvane; Flor, Herta; Frouin, Vincent; Garavan, Hugh; Gowland, Penny; Ittermann, Bernd; Martinot, Jean-Luc; Martinot, Marie-Laure Paillère; Nees, Frauke; Papadopoulos-Orfanos, Dimitri; Paus, Tomá?; Poustka, Luise; Fröhner, Juliane H; Smolka, Michael N; Whelan, Robert; Schumann, Gunter; Tost, Heike; Meyer-Lindenberg, Andreas; Heinz, Andreas; Walter, Henrik; IMAGEN consortium |
Cerebral co |
