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Funded Research

The Human BioMolecular Atlas Program (HuBMAP) Integration, Visualization & Engagement (HIVE) Initiative (OT2 Clinical Trial Not Allowed) OTA-21-012 
PI NameInstitution NameTitle
RUFFALO, MATTHEW (contact)
PATEN, BENEDICT
TEICHMANN, SARAH
CARNEGIE-MELLON UNIVERSITYComputational tools for uniform processing and integration of human reference atlas data
BORNER, KATYINDIANA UNIVERSITY BLOOMINGTON3D Multiscale Biomolecular Human Reference Atlas Construction, Visualization and Usage
GEHLENBORG, NILSHARVARD MEDICAL SCHOOLData Exploration and Visualization Tools for HuBMAP and a Human Reference Atlas
BLOOD, PHILIP (contact)
SILVERSTEIN, JONATHAN C.
CARNEGIE-MELLON UNIVERSITYFlexible Hybrid Cloud Infrastructure for Seamless Management and Use of Human BioMoloecular Data and Reference Maps
SATIJA, RAHUL (contact)
MARIONI, JOHN CARLO
NEW YORK GENOME CENTERComprehensive reference atlas construction, geolocation and data integration for HuBMAP HIVE
SARDER, PINAKIUNIVERSITY OF FLORIDAA Computational IMage Analysis Platform (CIMAP) for HuBMAP

 

The Human BioMolecular Atlas Program (HuBMAP) Demonstration Project (U01 Clinical Trial Not Allowed) RFA-RM-21-027
PI NameInstitution NameTitle
GUPTA, RAJAT M (contact)
SEGRE, AYELLET VERED
BRIGHAM AND WOMEN'S HOSPITALIdentifying the organotypic and disease-specific vascular cell populations by integrating single cell data with polygenic risk
LARONDA, MONICA MLURIE CHILDREN'S HOSPITAL OF CHICAGOReverse Engineering the Extracellular Neighborhood to Support the Functional Tissue Unit: A Use Case to Restore Ovarian Function
NABA, ALEXANDRA (contact)
GAO, YU
UNIVERSITY OF ILLINOIS AT CHICAGOThinking outside the cell: Leveraging HuBMAP data to build the human ECM atlas
PEI, LIMING (contact)
WALLACE, DOUGLAS C
XING, YI
CHILDREN'S HOSP OF PHILADELPHIANovel biological insights by utilizing mitochondrial genome information from HuBMAP resources

 

Tissue Mapping Centers for the Human BioMolecular Atlas Program (U54 Clinical Trial Not Allowed) RFA-RM-21-026
PI NameInstitution NameTitle
BENDALL, SEAN CURTIS (contact)
ANGELO, ROBERT MICHAEL
STANFORD UNIVERSITYMultimodal histologic atlas of human bone marrow
GINTY, FIONA (contact)
KARUNAMURTHY, ARIVARASAN
GENERAL ELECTRIC GLOBAL RESEARCH CTRMultiscale, Multimodal Analysis of Skin and Spatial Cell Organization
JAIN, SANJAY (contact)
ZHANG, KUN
WASHINGTON UNIVERSITYKidney single cell and spatial molecular atlas project - KIDSSMAP
LAURENT, LOUISE CHANGUNIVERSITY OF CALIFORNIA, SAN DIEGOPregnant Female Reproductive Tissue Mapping Center
PRYHUBER, GLORIA SUNIVERSITY OF ROCHESTERThe Human Lung BioMolecular Multi-Scale Atlas Program (HuBMAP-Lung)
SINGHAL, DHRUV (contact)
HONG, YOUNG-KWON
VLACHOS, IOANNIS
BETH ISRAEL DEACONESS MEDICAL CENTERMulti-scale Spatial Mapping of Human Lymphatic Vessels
SNYDER, MICHAEL P (contact)
NOLAN, GARRY P
STANFORD UNIVERSITYStanford Tissue Mapping Center
SPRAGGINS, JEFFREY M (contact)
CAPRIOLI, RICHARD M
VANDERBILT UNIVERSITYVanderbilt University Biomolecular Multimodal Imaging Center for 3-Dimensional Mapping of the Human Kidney
TAN, KAI (contact)
MOFFITT, JEFFREY
PEI, LIMING
CHILDREN'S HOSP OF PHILADELPHIACenter for multidimensional atlas of the human heart
WIRTZ, DENIS (contact)
REDDY, SASHANK
JOHNS HOPKINS UNIVERSITY3D Multiscale Reference Atlas for Human Skin

 

Tissue Mapping Centers for the Human BioMolecular Atlas Program (U54 Clinical Trial Not Allowed) RFA-RM-20-002
PI NameInstitution NameTitle
QIAN, WEI-JUN (contact)
CARSON, JAMES PAUL
MATHEWS, CLAYTON E.
BATTELLE PACIFIC NORTHWEST LABORATORIESMulti-omic 3D tissue maps for a Human BioMolecular Atlas
KIM, JUNHYONG (contact)
O'NEILL, KATHLEEN ELISE
UNIVERSITY OF PENNSYLVANIAPenn Center for Multi-scale Molecular Mapping of the Female Reproductive System
LAURENT, LOUISE CHANGUNIVERSITY OF CALIFORNIA, SAN DIEGOFemale Reproductive Tissue Mapping Center
ROWE, DAVID W. (contact)
MAYE, PETER
SHIN, DONG-GUK
UNIVERSITY OF CONNECTICUT SCH OF MED/DNTHigh resolution 3D mapping of cellular heterogeneity within multiple types of mineralized tissues
SPRAGGINS, JEFFREY M (contact)
CAPRIOLI, RICHARD M
POWERS, ALVIN C
SCHEY, KEVIN L
VANDERBILT UNIVERSITYBiomolecular Multimodal Imaging Center: 3-Dimensional Tissue Mapping of the Human Pancreas and Eye
TAN, KAI (contact)
BERNT, KATHRIN M
PEI, LIMING
CHILDREN'S HOSP OF PHILADELPHIACenter for Developmental Mapping of Heart and Bone Tissues

 

Transformative Technology Development for the Human BioMolecular Atlas Program (UG3/UH3 Clinical Trial Not Allowed) RFA-RM-20-001
PI NameInstitution NameTitle
FAN, RONGYALE UNIVERSITYHigh-spatial-resolution ECM-inclusive multi-omics sequencing of human PFA and FFPE tissue slides
PASA-TOLIC, LJILJANABATTELLE PACIFIC NORTHWEST LABORATORIESSpatially resolved characterization of proteoforms for functional proteomics
SHI, TUJIN (contact)BATTELLE PACIFIC NORTHWEST LABORATORIESA streamlined platform for phosphoproteome mapping of human tissues
STOCKWELL, BRENT R (contact),
TIAN, HUA
COLUMBIA UNIV NEW YORK MORNINGSIDEMultimodal mass spectrometry imaging of mouse and human liver
ZHONG, SHENGUNIVERSITY OF CALIFORNIA, SAN DIEGOSpatial in situ mapping of RNA-chromatin interactions at transcriptome-and-genome scale in human tissues

 

The Human Biomolecular Atlas Program (HuBMAP): Rapid Implementation of Technologies that Will Accelerate Development of a Framework for Mapping the Human Body at High Resolution (UH3 Clinical Trial Not Allowed) RFA-RM-19-002
PI NameInstitution NameTitle
GINTY, FIONAGENERAL ELECTRIC GLOBAL RESEARCH CTRMulti-Scale 3-D Image Analytics for High Dimensional Spatial Mapping of Normal Tissues
ANGELO, ROBERT MICHAEL (contact)
BENDALL, SEAN CURTIS
STANFORD UNIVERSITYA robust platform for multiplexed, subcellular proteomic imaging in human tissue
KELLEHER, NEIL LNORTHWESTERN UNIVERSITYRenewable and Specific Affinity Reagents for Mapping Proteoforms in Human Tissues
MACOSKO, EVAN ZBROAD INSTITUTE, INC.Implementation of Slide-seq for high-resolution, whole-transcriptome human tissue maps.

 

Transformative Technology Development for The Human BioMolecular Atlas Program (UG3/UH3 Clinical Trial Not Allowed) RFA-RM-17-025 
PI NameInstitution NameTitle
CAI, LONG (contact)
YUAN, GUO-CHENG
CALIFORNIA INSTITUTE OF TECHNOLOGYIn situ transcriptome profiling in single cells
HARBURY, PEHR A (contact)
DESAI, TUSHAR JASUBHAI
STANFORD UNIVERSITYNext-Generation Genomic Imaging Technology
LASKIN, JULIAPURDUE UNIVERSITYNovel Platform for Quantitative Subcellular Resolution Imaging of Human Tissues Using Mass Spectrometry
YIN, PENGHARVARD UNIVERSITYHigh-Throughput, Highly Multiplexed In Situ Proteomic Imaging of Human Tissues

 

Tissue Mapping Centers for The Human BioMolecular Atlas Program (U54) RFA-RM-17-027 
PI NameInstitution NameTitle
ATKINSON, MARK A. (contact)
BODENMILLER, BERND
NICK, HARRY S
UNIVERSITY OF FLORIDAA 3D Tissue Map of the Human Lymphatic System
CAI, LONG (contact)
SHENDURE, JAY ASHOK
TRAPNELL, BRUCE COLSTON
CALIFORNIA INSTITUTE OF TECHNOLOGYA Spatially Resolved Molecular Atlas of Human Endothelium
CAPRIOLI, RICHARD M (contact)
SPRAGGINS, JEFFREY M
VANDERBILT UNIVERSITYVanderbilt University Biomolecular Multimodal Imaging Center for 3-Dimensional Tissue Mapping
SNYDER, MICHAEL P. (contact)
NOLAN, GARRY P
STANFORD UNIVERSITYStanford Tissue Mapping Center
ZHANG, KUN (contact)
HAGOOD, JAMES S.
JAIN, SANJAY
KHARCHENKO, PETER V
SUN, XIN
UNIVERSITY OF CALIFORNIA, SAN DIEGOKULMAP: Human Kidney, urinary tract and lung mapping center

 

The Human BioMolecular Atlas Program (HuBMAP) Integration, Visualization & Engagement (HIVE) Initiative (OT2 Clinical Trial Not Allowed) RFA-RM-18-001 
PI NameInstitution NameTitle
BAR-JOSEPH, ZIV (contact)
PATEN, BENEDICT
TEICHMANN, SARAH
CARNEGIE-MELLON UNIVERSITYCOMPREHENSIVE, FLEXIBLE AND FAIR TOOLS FOR THE HUBMAP HIVE
BORNER, KATYINDIANA UNIVERSITY BLOOMINGTONThe Human Body Atlas: High-Resolution, Functional Mapping of Voxel, Vector, and Meta Datasets
GEHLENBORG, NILSHARVARD MEDICAL SCHOOLHuBMAP HIVE Tools Component
BLOOD, PHILIP (contact)
SILVERSTEIN, JONATHAN C.
CARNEGIE-MELLON UNIVERSITYFlexible Hybrid Cloud Infrastructure for Seamless Management of HuBMAP Resources
SATIJA, RAHUL (contact)
MARIONI, JOHN CARLO
NEW YORK GENOME CENTERComprehensive reference map construction, geolocation and data integration for HuBMAP HIVE

This page last reviewed on January 24, 2024