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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.

Title Authors Journal PubMedID Publication Date
Infants who develop autism show smaller inventories of deictic and symbolic gestures at 12 months of age. Wu, Dennis; Wolff, Jason J; Ravi, Shruthi; Elison, Jed T; Estes, Annette; Paterson, Sarah; St John, Tanya; Abdi, Hervé; Moraglia, Luke E; Piven, Joseph; Swanson, Meghan R; IBIS Network Autism research : official journal of the International Society for Autism Research 38204321 2024 Jan 10
Impact of Eating a Carbohydrate-Restricted Diet on Cortical Atrophy in a Cross-Section of Amyloid Positive Patients with Alzheimer's Disease: A Small Sample Study. Bramen, Jennifer E; Siddarth, Prabha; Popa, Emily S; Kress, Gavin T; Rapozo, Molly K; Hodes, John F; Ganapathi, Aarthi S; Slyapich, Colby B; Glatt, Ryan M; Pierce, Kyron; Porter, Verna R; Wong, Claudia; Kim, Mihae; Dye, Richelin V; Panos, Stella; Bookheimer, Tess; Togashi, Tori; Loong, Spencer; Raji, Cyrus A; Bookheimer, Susan Y; Roach, Jared C; Merrill, David A Journal of Alzheimer's disease : JAD 37742646 2023
Are early social communication skills a harbinger for language development in infants later diagnosed autistic?-A longitudinal study using a standardized social communication assessment. Ravi, Shruthi; Bradshaw, Allison; Abdi, Hervé; Meera, Shoba Sreenath; Parish-Morris, Julia; Yankowitz, Lisa; Paterson, Sarah; Dager, Stephen R; Burrows, Catherine A; Chappell, Chad; St John, Tanya; Estes, Annette M; Piven, Joseph; Swanson, Meghan R; IBIS Network Frontiers in communication 37168581 2022
Trajectories from Distribution-valued Functional Curves: A Unified Wasserstein Framework★. Sharma, Anuja; Gerig, Guido Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 36108328 2020 Oct
Cancer cells depend on environmental lipids for proliferation when electron acceptors are limited. Li, Zhaoqi; Ji, Brian W; Dixit, Purushottam D; Tchourine, Konstantine; Lien, Evan C; Hosios, Aaron M; Abbott, Keene L; Rutter, Justine C; Westermark, Anna M; Gorodetsky, Elizabeth F; Sullivan, Lucas B; Vander Heiden, Matthew G; Vitkup, Dennis Nature metabolism 35739397 2022 Jun
The GA4GH Phenopacket schema defines a computable representation of clinical data. Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; Callahan, Tiffany J; Chute, Christopher G; Courtot, Mélanie; Danis, Daniel; Elemento, Olivier; Essenwanger, Andrea; Freimuth, Robert R; Gargano, Michael A; Groza, Tudor; Hamosh, Ada; Harris, Nomi L; Kaliyaperumal, Rajaram; Lloyd, Kevin C Kent; Khalifa, Aly; Krawitz, Peter M; Köhler, Sebastian; Laraway, Brian J; Lehväslaiho, Heikki; Matalonga, Leslie; McMurry, Julie A; Metke-Jimenez, Alejandro; Mungall, Christopher J; Munoz-Torres, Monica C; Ogishima, Soichi; Papakonstantinou, Anastasios; Piscia, Davide; Pontikos, Nikolas; Queralt-Rosinach, Núria; Roos, Marco; Sass, Julian; Schofield, Paul N; Seelow, Dominik; Siapos, Anastasios; Smedley, Damian; Smith, Lindsay D; Steinhaus, Robin; Sundaramurthi, Jagadish Chandrabose; Swietlik, Emilia M; Thun, Sylvia; Vasilevsky, Nicole A; Wagner, Alex H; Warner, Jeremy L; Weiland, Claus; GAGH Phenopacket Modeling Consortium; Haendel, Melissa A; Robinson, Peter N Nature biotechnology 35705716 2022 Jun
An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease. Ghosh, Pradipta; Katkar, Gajanan D; Shimizu, Chisato; Kim, Jihoon; Khandelwal, Soni; Tremoulet, Adriana H; Kanegaye, John T; Pediatric Emergency Medicine Kawasaki Disease Research Group Nature communications 35577777 2022 05 16
FYN-TRAF3IP2 induces NF-κB signaling-driven peripheral T cell lymphoma. Moon, Christine S; Reglero, Clara; Cortes, Jose R; Quinn, S Aidan; Alvarez, Silvia; Zhao, Junfei; Lin, Wen-Hsuan W; Cooke, Anisha J; Abate, Francesco; Soderquist, Craig R; Fiñana, Claudia; Inghirami, Giorgio; Campo, Elias; Bhagat, Govind; Rabadan, Raul; Palomero, Teresa; Ferrando, Adolfo A Nature cancer 33928261 2021 Jan
Mutational and functional genetics mapping of chemotherapy resistance mechanisms in relapsed acute lymphoblastic leukemia. Oshima, Koichi; Zhao, Junfei; Pérez-Durán, Pablo; Brown, Jessie A; Patiño-Galindo, Juan Angel; Chu, Timothy; Quinn, Aidan; Gunning, Thomas; Belver, Laura; Ambesi-Impiombato, Alberto; Tosello, Valeria; Wang, Zhengqiang; Sulis, Maria Luisa; Kato, Motohiro; Koh, Katsuyoshi; Paganin, Maddalena; Basso, Giuseppe; Balbin, Milagros; Nicolas, Concepcion; Gastier-Foster, Julie M; Devidas, Meenakshi; Loh, Mignon L; Paietta, Elisabeth; Tallman, Martin S; Rowe, Jacob M; Litzow, Mark; Minden, Mark D; Meijerink, Jules; Rabadan, Raul; Ferrando, Adolfo Nature cancer 33796864 2020 Nov
Novel ultra-rare exonic variants identified in a founder population implicate cadherins in schizophrenia. Lencz, Todd; Yu, Jin; Khan, Raiyan Rashid; Flaherty, Erin; Carmi, Shai; Lam, Max; Ben-Avraham, Danny; Barzilai, Nir; Bressman, Susan; Darvasi, Ariel; Cho, Judy H; Clark, Lorraine N; Gümüş, Zeynep H; Vijai, Joseph; Klein, Robert J; Lipkin, Steven; Offit, Kenneth; Ostrer, Harry; Ozelius, Laurie J; Peter, Inga; Malhotra, Anil K; Maniatis, Tom; Atzmon, Gil; Pe'er, Itsik Neuron 33756103 2021 05 05
General anaesthesia during infancy reduces white matter micro-organisation in developing rhesus monkeys. Young, Jeffrey T; Vlasova, Roza M; Howell, Brittany R; Knickmeyer, Rebecca C; Morin, Elyse; Kuitchoua, Kaela I; Lubach, Gabriele R; Noel, Jean; Hu, Xiaoping; Shi, Yundi; Caudill, Gibson; Alexander, Andrew L; Niethammer, Marc; Paule, Merle G; Coe, Christopher L; Sanchez, Mar; Styner, Martin British journal of anaesthesia 33549320 2021 04
An empirical meta-analysis of the life sciences linked open data on the web. Kamdar, Maulik R; Musen, Mark A Scientific data 33479214 2021 01 21
Comprehensive characterization of hepatocyte-derived extracellular vesicles identifies direct miRNA-based regulation of hepatic stellate cells and DAMP-based hepatic macrophage IL-1β and IL-17 upregulation in alcoholic hepatitis mice. Eguchi, Akiko; Yan, Rui; Pan, Stephanie Q; Wu, Raymond; Kim, Jihoon; Chen, Yibu; Ansong, Charles; Smith, Richard D; Tempaku, Mina; Ohno-Machado, Lucila; Takei, Yoshiyuki; Feldstein, Ariel E; Tsukamoto, Hidekazu Journal of molecular medicine (Berlin, Germany) 32556367 2020 07
Big Data Privacy in Biomedical Research. Wang, Shuang; Bonomi, Luca; Dai, Wenrui; Chen, Feng; Cheung, Cynthia; Bloss, Cinnamon S; Cheng, Samuel; Jiang, Xiaoqian IEEE transactions on big data. 32478127 2020 Jun;
Unleashing the value of Common Data Elements through the CEDAR Workbench. O'Connor, Martin J; Warzel, Denise B; Martínez-Romero, Marcos; Hardi, Josef; Willrett, Debra; Egyedi, Attila L; Eftekhari, Aras; Graybeal, John; Musen, Mark A AMIA ... Annual Symposium proceedings. AMIA Symposium. 32308863 2019;
Active Surveillance of the Implantable Cardioverter-Defibrillator Registry for Defibrillator Lead Failures. Resnic, Frederic S; Majithia, Arjun; Dhruva, Sanket S; Ssemaganda, Henry; Robbins, Susan; Marinac-Dabic, Danica; Hewitt, Kathleen; Ohno-Machado, Lucila; Reynolds, Matthew R; Matheny, Michael E Circulation. Cardiovascular quality and outcomes. 32283971 2020 Apr;
Sex differences associated with corpus callosum development in human infants: A longitudinal multimodal imaging study. Schmied, Astrid; Soda, Takahiro; Gerig, Guido; Styner, Martin; Swanson, Meghan R; Elison, Jed T; Shen, Mark D; McKinstry, Robert C; Pruett Jr, John R; Botteron, Kelly N; Estes, Annette M; Dager, Stephen R; Hazlett, Heather C; Schultz, Robert T; Piven, Joseph; Wolff, Jason J; IBIS Network NeuroImage. 32276067 2020 Jul 15;
SlicerDMRI: Diffusion MRI and Tractography Research Software for Brain Cancer Surgery Planning and Visualization. Zhang, Fan; Noh, Thomas; Juvekar, Parikshit; Frisken, Sarah F; Rigolo, Laura; Norton, Isaiah; Kapur, Tina; Pujol, Sonia; Wells 3rd, William; Yarmarkovich, Alex; Kindlmann, Gordon; Wassermann, Demian; San Jose Estepar, Raul; Rathi, Yogesh; Kikinis, Ron; Johnson, Hans J; Westin, Carl-Fredrik; Pieper, Steve; Golby, Alexandra J; O'Donnell, Lauren J JCO clinical cancer informatics. 32216636 2020 Mar;
A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies. Degasperi, Andrea; Amarante, Tauanne Dias; Czarnecki, Jan; Shooter, Scott; Zou, Xueqing; Glodzik, Dominik; Morganella, Sandro; Nanda, Arjun S; Badja, Cherif; Koh, Gene; Momen, Sophie E; Georgakopoulos-Soares, Ilias; Dias, João M L; Young, Jamie; Memari, Yasin; Davies, Helen; Nik-Zainal, Serena Nature cancer 32118208 2020 Feb
Social subordination alters estradiol-induced changes in cortico-limbic brain volumes in adult female rhesus monkeys. Reding, Katherine M; Styner, Martin M; Wilson, Mark E; Toufexis, Donna; Sanchez, Mar M Psychoneuroendocrinology. 32023501 2020 04;
High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP). Zhang, Yichi; Cai, Tianrun; Yu, Sheng; Cho, Kelly; Hong, Chuan; Sun, Jiehuan; Huang, Jie; Ho, Yuk-Lam; Ananthakrishnan, Ashwin N; Xia, Zongqi; Shaw, Stanley Y; Gainer, Vivian; Castro, Victor; Link, Nicholas; Honerlaw, Jacqueline; Huang, Sicong; Gagnon, David; Karlson, Elizabeth W; Plenge, Robert M; Szolovits, Peter; Savova, Guergana; Churchill, Susanne; O'Donnell, Christopher; Murphy, Shawn N; Gaziano, J Michael; Kohane, Isaac; Cai, Tianxi; Liao, Katherine P Nature protocols. 31748751 2019 Dec;
Enabling Web-scale data integration in biomedicine through Linked Open Data. Kamdar, Maulik R; Fernández, Javier D; Polleres, Axel; Tudorache, Tania; Musen, Mark A NPJ digital medicine. 31531395 2019;
Building a tobacco user registry by extracting multiple smoking behaviors from clinical notes. Palmer, Ellen L; Hassanpour, Saeed; Higgins, John; Doherty, Jennifer A; Onega, Tracy BMC medical informatics and decision making. 31340796 2019 Jul 25;
Machine Learning-Based Predictive Modeling of Surgical Intervention in Glaucoma Using Systemic Data From Electronic Health Records. Baxter, Sally L; Marks, Charles; Kuo, Tsung-Ting; Ohno-Machado, Lucila; Weinreb, Robert N American journal of ophthalmology. 31323204 2019 Dec;
Precursor-induced conditional random fields: connecting separate entities by induction for improved clinical named entity recognition. Lee, Wangjin; Choi, Jinwook BMC medical informatics and decision making. 31307440 2019 07 15;
Early language exposure supports later language skills in infants with and without autism. Swanson, Meghan R; Donovan, Kevin; Paterson, Sarah; Wolff, Jason J; Parish-Morris, Julia; Meera, Shoba S; Watson, Linda R; Estes, Annette M; Marrus, Natasha; Elison, Jed T; Shen, Mark D; McNeilly, Heidi B; MacIntyre, Leigh; Zwaigenbaum, Lonnie; St John, Tanya; Botteron, Kelly; Dager, Stephen; Piven, Joseph; IBIS Network Autism research : official journal of the International Society for Autism Research. 31254329 2019 Dec;
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Martínez-Romero, Marcos; O'Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Hardi, Josef; Graybeal, John; Musen, Mark A Database : the journal of biological databases and curation. 31210270 2019 01 01;
Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis. Neri, Tui; Hiriart, Emilye; van Vliet, Patrick P; Faure, Emilie; Norris, Russell A; Farhat, Batoul; Jagla, Bernd; Lefrancois, Julie; Sugi, Yukiko; Moore-Morris, Thomas; Zaffran, Stéphane; Faustino, Randolph S; Zambon, Alexander C; Desvignes, Jean-Pierre; Nature communications. 31028265 2019 04 26;
Developing a portable natural language processing based phenotyping system. Sharma, Himanshu; Mao, Chengsheng; Zhang, Yizhen; Vatani, Haleh; Yao, Liang; Zhong, Yizhen; Rasmussen, Luke; Jiang, Guoqian; Pathak, Jyotishman; Luo, Yuan BMC medical informatics and decision making. 30943974 2019 Apr 04;
Clinical text classification with rule-based features and knowledge-guided convolutional neural networks. Yao, Liang; Mao, Chengsheng; Luo, Yuan BMC medical informatics and decision making. 30943960 2019 Apr 04;
Activation of hedgehog signaling associates with early disease progression in chronic lymphocytic leukemia. Ghia, Emanuela M; Rassenti, Laura Z; Neuberg, Donna S; Blanco, Alejandro; Yousif, Fouad; Smith, Erin N; McPherson, John D; Hudson, Thomas J; HALT Pan-Leukemia Gene Panel Consortium; Harismendy, Olivier; Frazer, Kelly A; Kipps, Thomas J Blood. 30923040 2019 Jun 20;
ACTIVE LEARNING GUIDED INTERACTIONS FOR CONSISTENT IMAGE SEGMENTATION WITH REDUCED USER INTERACTIONS. Veeraraghavan, Harini; Miller, James V Proceedings. IEEE International Symposium on Biomedical Imaging. 30881602 2011 Mar-Apr;
Distributed learning from multiple EHR databases: Contextual embedding models for medical events. Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, Qi Journal of biomedical informatics. 30825539 2019 Apr;
A Preliminary Study of Clinical Concept Detection Using Syntactic Relations. Torii, Manabu; Yang, Elly W; Doan, Son AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815146 2018;
Ensemble-based Methods to Improve De-identification of Electronic Health Record Narratives. Kim, Youngjun; Heider, Paul; Meystre, Stéphane AMIA ... Annual Symposium proceedings. AMIA Symposium. 30815108 2018;
Negative Regulation of Cytosolic Sensing of DNA. Abe, Takayuki; Shapira, Sagi D International review of cell and molecular biology. 30798991 2019;
The variable quality of metadata about biological samples used in biomedical experiments. Gonçalves, Rafael S; Musen, Mark A Scientific data. 30778255 2019 Feb 19;
Impact of aeration change and beam arrangement on the robustness of proton plans. Shusharina, Nadya; Fullerton, Barbara; Adams, Judy A; Sharp, Gregory C; Chan, Annie W Journal of applied clinical medical physics. 30756466 2019 Mar;
Unsupervised concept extraction from clinical text through semantic composition. Tulkens, Stéphan; ?uster, Simon; Daelemans, Walter Journal of biomedical informatics. 30753949 2019 03;
Classifying relations in clinical narratives using segment graph convolutional and recurrent neural networks (Seg-GCRNs). Li, Yifu; Jin, Ran; Luo, Yuan Journal of the American Medical Informatics Association : JAMIA. 30590613 2019 Mar 01;
Qualitative analysis of manual annotations of clinical text with SNOMED CT. Miñarro-Giménez, Jose Antonio; Martínez-Costa, Catalina; Karlsson, Daniel; Schulz, Stefan; Gøeg, Kirstine Rosenbeck PloS one. 30589855 2018;
Group-wise Shape Correspondence of Variable and Complex Objects. Lyu, Ilwoo; Perdomo, Jonathan; Yapuncich, Gabriel S; Paniagua, Beatriz; Boyer, Doug M; Styner, Martin A Proceedings of SPIE--the International Society for Optical Engineering. 30381780 2018 Mar;
Quantitative tract-based white matter heritability in 1- and 2-year-old twins. Lee, Seung Jae; Zhang, Jingwen; Neale, Michael C; Styner, Martin; Zhu, Hongtu; Gilmore, John H Human brain mapping. 30368980 2019 03;
Secure large-scale genome data storage and query. Chen, Luyao; Aziz, Md Momin; Mohammed, Noman; Jiang, Xiaoqian Computer methods and programs in biomedicine. 30337067 2018 Oct;
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi PLoS computational biology. 30048444 2018 07;
Keypoint Transfer for Fast Whole-Body Segmentation. Wachinger, Christian; Toews, Matthew; Langs, Georg; Wells, William; Golland, Polina IEEE transactions on medical imaging. 29994670 2018 Jun 27;
4D CONTINUOUS MEDIAL REPRESENTATION BY GEODESIC SHAPE REGRESSION. Hong, Sungmin; Fishbaugh, James; Gerig, Guido Proceedings. IEEE International Symposium on Biomedical Imaging. 29973975 2018 Apr;
Duodenal-Jejunal Flexure GI Stromal Tumor Frequently Heralds Somatic NF1 and Notch Pathway Mutations. Burgoyne, Adam M; De Siena, Martina; Alkhuziem, Maha; Tang, Chih-Min; Medina, Benjamin; Fanta, Paul T; Belinsky, Martin G; von Mehren, Margaret; Thorson, John A; Madlensky, Lisa; Bowler, Timothy; D'Angelo, Francesco; Stupack, Dwayne G; Harismendy, Olivier JCO precision oncology. 29938249 2017;
Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, Jaideep IEEE internet computing. 29867290 2018 Mar-Apr;
Association between inflammation and systolic blood pressure in RA compared to patients without RA. Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine P Arthritis research & therapy. 29855349 2018 Jun 01;
A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, Lucila AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854240 2017;
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark A AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854196 2017;
Exploiting Unlabeled Texts with Clustering-based Instance Selection for Medical Relation Classification. Kim, Youngjun; Riloff, Ellen; Meystre, Stéphane M AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854174 2017;
Mechanism-based Pharmacovigilance over the Life Sciences Linked Open Data Cloud. Kamdar, Maulik R; Musen, Mark A AMIA ... Annual Symposium proceedings. AMIA Symposium. 29854169 2017;
PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine P Journal of the American Medical Informatics Association : JAMIA. 29788308 2018 10 01;
Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. Agniel, Denis; Kohane, Isaac S; Weber, Griffin M BMJ (Clinical research ed.). 29712648 2018 04 30;
High-depth whole genome sequencing of an Ashkenazi Jewish reference panel: enhancing sensitivity, accuracy, and imputation. Lencz, Todd; Yu, Jin; Palmer, Cameron; Carmi, Shai; Ben-Avraham, Danny; Barzilai, Nir; Bressman, Susan; Darvasi, Ariel; Cho, Judy H; Clark, Lorraine N; Gümü?, Zeynep H; Joseph, Vijai; Klein, Robert; Lipkin, Steven; Offit, Kenneth; Ostrer, Harry; Ozelius, Human genetics. 29705978 2018 Apr;
Analyzing user interactions with biomedical ontologies: A visual perspective. Kamdar, Maulik R; Walk, Simon; Tudorache, Tania; Musen, Mark A Web semantics (Online). 29657560 2018 Mar;
Privacy-Preserving Patient Similarity Learning in a Federated Environment: Development and Analysis. Lee, Junghye; Sun, Jimeng; Wang, Fei; Wang, Shuang; Jun, Chi-Hyuck; Jiang, Xiaoqian JMIR medical informatics. 29653917 2018 Apr 13;
BiOnIC: A Catalog of User Interactions with Biomedical Ontologies. Kamdar, Maulik R; Walk, Simon; Tudorache, Tania; Musen, Mark A The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference. 29637199 2017 Oct;
Development of White Matter Circuitry in Infants With Fragile X Syndrome. Swanson, Meghan R; Wolff, Jason J; Shen, Mark D; Styner, Martin; Estes, Annette; Gerig, Guido; McKinstry, Robert C; Botteron, Kelly N; Piven, Joseph; Hazlett, Heather C; Infant Brain Imaging Study (IBIS) Network JAMA psychiatry. 29617515 2018 05 01;
Subcortical Brain and Behavior Phenotypes Differentiate Infants With Autism Versus Language Delay. Swanson, Meghan R; Shen, Mark D; Wolff, Jason J; Elison, Jed T; Emerson, Robert W; Styner, Martin A; Hazlett, Heather C; Truong, Kinh; Watson, Linda R; Paterson, Sarah; Marrus, Natasha; Botteron, Kelly N; Pandey, Juhi; Schultz, Robert T; Dager, Stephen R; Biological psychiatry. Cognitive neuroscience and neuroimaging. 29560900 2017 11;
Compressive Sensing Based Q-Space Resampling for Handling Fast Bulk Motion in Hardi Acquisitions. Elhabian, Shireen; Vachet, Clement; Piven, Joseph; for IBIS; Styner, Martin; Gerig, Guido Proceedings. IEEE International Symposium on Biomedical Imaging. 29492184 2016;
PhLeGrA: Graph Analytics in Pharmacology over the Web of Life Sciences Linked Open Data. Kamdar, Maulik R; Musen, Mark A Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 29479581 2017 Apr;
Annual Burden and Costs of Hospitalization for High-Need, High-Cost Patients with Chronic Gastrointestinal and Liver Diseases. Nguyen, Nghia H; Khera, Rohan; Ohno-Machado, Lucila; Sandborn, William J; Singh, Siddharth Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. 29474966 2018 Feb 20;
Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations. Azad, Robert N; Zafiropoulos, Dana; Ober, Douglas; Jiang, Yining; Chiu, Tsu-Pei; Sagendorf, Jared M; Rohs, Remo; Tullius, Thomas D Nucleic acids research. 29390080 2018 Jan 30;
Functional variants in the LRRK2 gene confer shared effects on risk for Crohn's disease and Parkinson's disease. Hui, Ken Y; Fernandez-Hernandez, Heriberto; Hu, Jianzhong; Schaffner, Adam; Pankratz, Nathan; Hsu, Nai-Yun; Chuang, Ling-Shiang; Carmi, Shai; Villaverde, Nicole; Li, Xianting; Rivas, Manual; Levine, Adam P; Bao, Xiuliang; Labrias, Philippe R; Haritunians, Science translational medicine. 29321258 2018 01 10;
Investigating the association between parity and the maternal neural response to infant cues. Maupin, Angela N; Rutherford, Helena J V; Landi, Nicole; Potenza, Marc N; Mayes, Linda C Social neuroscience. 29291661 2019 04;
Homeostatic Cell Growth Is Accomplished Mechanically through Membrane Tension Inhibition of Cell-Wall Synthesis. Rojas, Enrique R; Huang, Kerwyn Casey; Theriot, Julie A Cell systems. 29203279 2017 Dec 27;
Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach. Weng, Wei-Hung; Wagholikar, Kavishwar B; McCray, Alexa T; Szolovits, Peter; Chueh, Henry C BMC medical informatics and decision making. 29191207 2017 Dec 01;
PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens. Spahn, Philipp N; Bath, Tyler; Weiss, Ryan J; Kim, Jihoon; Esko, Jeffrey D; Lewis, Nathan E; Harismendy, Olivier Scientific reports. 29158538 2017 Nov 20;
Asymmetric and Symmetric Unbiased Image Registration: Statistical Assessment of Performance. Yanovsky, Igor; Thompson, Paul M; Osher, Stanley; Leow, Alex D Conference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops. 29152411 2008 Jun;
A Likelihood-Free Approach for Characterizing Heterogeneous Diseases in Large-Scale Studies. Schabdach, Jenna; Wells 3rd, William M; Cho, Michael; Batmanghelich, Kayhan N Information processing in medical imaging : proceedings of the ... conference. 29129964 2017 Jun;
Enabling phenotypic big data with PheNorm. Yu, Sheng; Ma, Yumeng; Gronsbell, Jessica; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Liao, Katherine P; Cai, Tianxi Journal of the American Medical Informatics Association : JAMIA. 29126253 2018 01 01;
SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research. Norton, Isaiah; Essayed, Walid Ibn; Zhang, Fan; Pujol, Sonia; Yarmarkovich, Alex; Golby, Alexandra J; Kindlmann, Gordon; Wassermann, Demian; Estepar, Raul San Jose; Rathi, Yogesh; Pieper, Steve; Kikinis, Ron; Johnson, Hans J; Westin, Carl-Fredrik; O'Donnell, Lauren J Cancer research. 29092950 2017 11 01;
Temporal Annotation in the Clinical Domain. Styler 4th, William F; Bethard, Steven; Finan, Sean; Palmer, Martha; Pradhan, Sameer; de Groen, Piet C; Erickson, Brad; Miller, Timothy; Lin, Chen; Savova, Guergana; Pustejovsky, James Transactions of the Association for Computational Linguistics. 29082229 2014 Apr;
The MELD-Plus: A generalizable prediction risk score in cirrhosis. Kartoun, Uri; Corey, Kathleen E; Simon, Tracey G; Zheng, Hui; Aggarwal, Rahul; Ng, Kenney; Shaw, Stanley Y PloS one. 29069090 2017;
Semantic Modeling for Exposomics with Exploratory Evaluation in Clinical Context. Fan, Jung-Wei; Li, Jianrong; Lussier, Yves A Journal of healthcare engineering. 29065591 2017;
Traumatic Brain Injury Severity, Neuropathophysiology, and Clinical Outcome: Insights from Multimodal Neuroimaging. Irimia, Andrei; Goh, Sheng-Yang Matthew; Wade, Adam C; Patel, Kavi; Vespa, Paul M; Van Horn, John D Frontiers in neurology. 29051745 2017;
Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies. Wang, Meng; Ji, Zhanglong; Wang, Shuang; Kim, Jihoon; Yang, Hai; Jiang, Xiaoqian; Ohno-Machado, Lucila Bioinformatics (Oxford, England). 29036461 2017 Dec 01;
Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. Luo, Yuan; Cheng, Yu; Uzuner, Özlem; Szolovits, Peter; Starren, Justin Journal of the American Medical Informatics Association : JAMIA. 29025149 2018 01 01;
Biological and functional relevance of CASP predictions. Liu, Tianyun; Ish-Shalom, Shirbi; Torng, Wen; Lafita, Aleix; Bock, Christian; Mort, Matthew; Cooper, David N; Bliven, Spencer; Capitani, Guido; Mooney, Sean D; Altman, Russ B Proteins. 28975675 2018 Mar;
Subject-Specific Longitudinal Shape Analysis by Coupling Spatiotemporal Shape Modeling with Medial Analysis. Hong, Sungmin; Fishbaugh, James; Rezanejad, Morteza; Siddiqi, Kaleem; Johnson, Hans; Paulsen, Jane; Kim, Eun Young; Gerig, Guido Proceedings of SPIE--the International Society for Optical Engineering. 28966430 2017 Apr;
Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation. van der Weyden, Louise; Karp, Natasha A; Swiatkowska, Agnieszka; Adams, David J; Speak, Anneliese O Scientific data. 28895944 2017 09 12;
On the Role of Mechanics in Chronic Lung Disease. Eskandari, Mona; Pfaller, Martin R; Kuhl, Ellen Materials (Basel, Switzerland). 28788414 2013 Dec 04;
Genome-wide association analysis identifies common variants influencing infant brain volumes. Xia, K; Zhang, J; Ahn, M; Jha, S; Crowley, J J; Szatkiewicz, J; Li, T; Zou, F; Zhu, H; Hibar, D; Thompson, P; ENIGMA Consortium; Sullivan, P F; Styner, M; Gilmore, J H; Knickmeyer, R C Translational psychiatry. 28763065 2017 Aug 01;
A Mortality Study for ICU Patients using Bursty Medical Events. Bonomi, Luca; Jiang, Xiaoqian Proceedings. International Conference on Data Engineering. 28757793 2017 Apr;
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Characterization of Exercise and Alcohol Self-Management Behaviors of Type 1 Diabetes Patients on Insulin Pump Therapy. Grando, Maria Adela; Groat, Danielle; Soni, Hiral; Boyle, Mary; Bailey, Marilyn; Thompson, Bithika; Cook, Curtiss B Journal of diabetes science and technology. 27595712 2017 Mar;
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Cronkhite Canada Syndrome: Significant Response to Infliximab and a Possible Clue to Pathogenesis. Boland, Brigid S; Bagi, Preet; Valasek, Mark A; Chang, John T; Bustamante, Ranier; Madlensky, Lisa; Sandborn, William J; Harismendy, Olivier; Gupta, Samir The American journal of gastroenterology. 27151126 2016 05;
Common 3-dimensional coordinate system for assessment of directional changes. Ruellas, Antonio Carlos de Oliveira; Tonello, Cristiano; Gomes, Liliane Rosas; Yatabe, Marilia Sayako; Macron, Lucie; Lopinto, Julia; Goncalves, Joao Roberto; Garib Carreira, Daniela Gamba; Alonso, Nivaldo; Souki, Bernardo Quiroga; Coqueiro, Raildo da Silva; Cevidanes, Lucia Helena Soares American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics. 27131246 2016 May;
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Tensor factorization toward precision medicine. Luo, Yuan; Wang, Fei; Szolovits, Peter Briefings in bioinformatics. 26994614 2017 05 01;
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Using an Electronic Medical Records Database to Identify Non-Traditional Cardiovascular Risk Factors in Nonalcoholic Fatty Liver Disease. Corey, Kathleen E; Kartoun, Uri; Zheng, Hui; Chung, Raymond T; Shaw, Stanley Y The American journal of gastroenterology. 26925881 2016 May;
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Apathy Is Associated With Ventral Striatum Volume in Schizophrenia Spectrum Disorder. Roth, Robert M; Garlinghouse, Matthew A; Flashman, Laura A; Koven, Nancy S; Pendergrass, J Cara; Ford, James C; McAllister, Thomas W; Saykin, Andrew J The Journal of neuropsychiatry and clinical neurosciences. 26900738 2016;
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Multimodal neuroimaging computing: a review of the applications in neuropsychiatric disorders. Liu, Sidong; Cai, Weidong; Liu, Siqi; Zhang, Fan; Fulham, Michael; Feng, Dagan; Pujol, Sonia; Kikinis, Ron Brain informatics. 26870629 2015;
Ten Simple Rules for Selecting a Bio-ontology. Malone, James; Stevens, Robert; Jupp, Simon; Hancocks, Tom; Parkinson, Helen; Brooksbank, Cath PLoS computational biology 26867217 2016 Feb
Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Luo, Yuan; Uzuner, Özlem; Szolovits, Peter Briefings in bioinformatics. 26851224 2017 Jan;
Building a Natural Language Processing Tool to Identify Patients With High Clinical Suspicion for Kawasaki Disease from Emergency Department Notes. Doan, Son; Maehara, Cleo K; Chaparro, Juan D; Lu, Sisi; Liu, Ruiling; Graham, Amanda; Berry, Erika; Hsu, Chun-Nan; Kanegaye, John T; Lloyd, David D; Ohno-Machado, Lucila; Burns, Jane C; Tremoulet, Adriana H; Pediatric Emergency Medicine Kawasaki Disease Research Group Academic emergency medicine : official journal of the Society for Academic Emergency Medicine. 26826020 2016 May;
Genes with monoallelic expression contribute disproportionately to genetic diversity in humans. Savova, Virginia; Chun, Sung; Sohail, Mashaal; McCole, Ruth B; Witwicki, Robert; Gai, Lisa; Lenz, Tobias L; Wu, C-ting; Sunyaev, Shamil R; Gimelbrant, Alexander A Nature genetics. 26808112 2016 Mar;
Biomechanical model for computing deformations for whole-body image registration: A meshless approach. Li, Mao; Miller, Karol; Joldes, Grand Roman; Kikinis, Ron; Wittek, Adam International journal for numerical methods in biomedical engineering. 26791945 2016 12;
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Generating Purkinje networks in the human heart. Sahli Costabal, Francisco; Hurtado, Daniel E; Kuhl, Ellen Journal of biomechanics. 26748729 2016 08 16;
A Biomechanical Model of the Scapulothoracic Joint to Accurately Capture Scapular Kinematics during Shoulder Movements. Seth, Ajay; Matias, Ricardo; Veloso, António P; Delp, Scott L PloS one 26734761 2016
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Privacy-preserving GWAS analysis on federated genomic datasets. Constable, Scott D; Tang, Yuzhe; Wang, Shuang; Jiang, Xiaoqian; Chapin, Steve BMC medical informatics and decision making 26733045 2015
Absence of evidence for increase in risk for autism or attention-deficit hyperactivity disorder following antidepressant exposure during pregnancy: a replication study. Castro, V M; Kong, S W; Clements, C C; Brady, R; Kaimal, A J; Doyle, A E; Robinson, E B; Churchill, S E; Kohane, I S; Perlis, R H Translational psychiatry. 26731445 2016 Jan 05;
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Predictive modeling of risk factors and complications of cataract surgery. Gaskin, Gregory L; Pershing, Suzann; Cole, Tyler S; Shah, Nigam H European journal of ophthalmology. 26692059 2016 Jun 10;
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Participation of low-income women in genetic cancer risk assessment and BRCA 1/2 testing: the experience of a safety-net institution. Komenaka, Ian K; Nodora, Jesse N; Madlensky, Lisa; Winton, Lisa M; Heberer, Meredith A; Schwab, Richard B; Weitzel, Jeffrey N; Martinez, Maria Elena Journal of community genetics. 26690931 2016 Jul;
Entropy-based particle correspondence for shape populations. Oguz, Ipek; Cates, Josh; Datar, Manasi; Paniagua, Beatriz; Fletcher, Thomas; Vachet, Clement; Styner, Martin; Whitaker, Ross International journal of computer assisted radiology and surgery. 26646417 2016 Jul;
Androgen Deprivation Therapy and Future Alzheimer's Disease Risk. Nead, Kevin T; Gaskin, Greg; Chester, Cariad; Swisher-McClure, Samuel; Dudley, Joel T; Leeper, Nicholas J; Shah, Nigam H Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 26644522 2016 Feb 20;
Comparing high-dimensional confounder control methods for rapid cohort studies from electronic health records. Low, Yen Sia; Gallego, Blanca; Shah, Nigam Haresh Journal of comparative effectiveness research. 26634383 2016 Mar;
Splicing Express: a software suite for alternative splicing analysis using next-generation sequencing data. Kroll, Jose E; Kim, Jihoon; Ohno-Machado, Lucila; de Souza, Sandro J PeerJ. 26618088 2015;
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Using Kepler for Tool Integration in Microarray Analysis Workflows. Gan, Zhuohui; Stowe, Jennifer C; Altintas, Ilkay; McCulloch, Andrew D; Zambon, Alexander C Procedia computer science 26605000 2014
A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation--With Application to Tumor and Stroke. Menze, Bjoern H; Van Leemput, Koen; Lashkari, Danial; Riklin-Raviv, Tammy; Geremia, Ezequiel; Alberts, Esther; Gruber, Philipp; Wegener, Susanne; Weber, Marc-Andre; Szekely, Gabor; Ayache, Nicholas; Golland, Polina IEEE transactions on medical imaging. 26599702 2016 Apr;
Inter- and intra-patient clonal and subclonal heterogeneity of chronic lymphocytic leukaemia: evidences from circulating and lymph nodal compartments. Del Giudice, Ilaria; Marinelli, Marilisa; Wang, Jiguang; Bonina, Silvia; Messina, Monica; Chiaretti, Sabina; Ilari, Caterina; Cafforio, Luciana; Raponi, Sara; Mauro, Francesca Romana; Di Maio, Valeria; De Propris, Maria Stefania; Nanni, Mauro; Ciardullo, Carmela; Rossi, Davide; Gaidano, Gianluca; Guarini, Anna; Rabadan, Raul; Foà, Robin British journal of haematology. 26597680 2016 Feb;
Elucidation and Pharmacological Targeting of Novel Molecular Drivers of Follicular Lymphoma Progression. Bisikirska, Brygida; Bansal, Mukesh; Shen, Yao; Teruya-Feldstein, Julie; Chaganti, Raju; Califano, Andrea Cancer research. 26589882 2016 Feb 1;
Trends in biomedical informatics: automated topic analysis of JAMIA articles. Han, Dong; Wang, Shuang; Jiang, Chao; Jiang, Xiaoqian; Kim, Hyeon-Eui; Sun, Jimeng; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA. 26555018 2015 Nov;
VERTIcal Grid lOgistic regression (VERTIGO). Li, Yong; Jiang, Xiaoqian; Wang, Shuang; Xiong, Hongkai; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA. 26554428 2016 05;
Development and Validation of an Algorithm to Identify Nonalcoholic Fatty Liver Disease in the Electronic Medical Record. Corey, Kathleen E; Kartoun, Uri; Zheng, Hui; Shaw, Stanley Y Digestive diseases and sciences. 26537487 2016 Mar;
SPReM: Sparse Projection Regression Model For High-dimensional Linear Regression. Sun, Qiang; Zhu, Hongtu; Liu, Yufeng; Ibrahim, Joseph G; Alzheimer?;s Disease Neuroimaging Initiative Journal of the American Statistical Association. 26527844 2015;
Three-dimensional regional displacement after surgical-orthodontic correction of Class III malocclusion. Koerich, L; Ruellas, A C O; Paniagua, B; Styner, M; Turvey, T; Cevidanes, L H S Orthodontics & craniofacial research. 26521755 2016 May;
Multilayered temporal modeling for the clinical domain. Lin, Chen; Dligach, Dmitriy; Miller, Timothy A; Bethard, Steven; Savova, Guergana K Journal of the American Medical Informatics Association : JAMIA. 26521301 2016 Mar;
Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. Uzuner, Özlem; Stubbs, Amber Journal of biomedical informatics. 26515500 2015 Dec;
An Adaptive Difference Distribution-based Coding with Hierarchical Tree Structure for DNA Sequence Compression. Dai, Wenrui; Xiong, Hongkai; Jiang, Xiaoqian; Ohno-Machado, Lucila Proceedings. Data Compression Conference 26501129 2013
Splenium development and early spoken language in human infants. Swanson, Meghan R; Wolff, Jason J; Elison, Jed T; Gu, Hongbin; Hazlett, Heather C; Botteron, Kelly; Styner, Martin; Paterson, Sarah; Gerig, Guido; Constantino, John; Dager, Stephen; Estes, Annette; Vachet, Clement; Piven, Joseph; IBIS Network Developmental science. 26490257 2017 Mar;
Implications of non-stationarity on predictive modeling using EHRs. Jung, Kenneth; Shah, Nigam H Journal of biomedical informatics. 26483171 2015 Dec;
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants. Petryszak, Robert; Keays, Maria; Tang, Y Amy; Fonseca, Nuno A; Barrera, Elisabet; Burdett, Tony; Füllgrabe, Anja; Fuentes, Alfonso Muñoz-Pomer; Jupp, Simon; Koskinen, Satu; Mannion, Oliver; Huerta, Laura; Megy, Karine; Snow, Catherine; Williams, Eleanor; Barzine, Mitra; Hastings, Emma; Weisser, Hendrik; Wright, James; Jaiswal, Pankaj; Huber, Wolfgang; Choudhary, Jyoti; Parkinson, Helen E; Brazma, Alvis Nucleic acids research. 26481351 2016 Jan 4;
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Creating a Common Data Model for Comparative Effectiveness with the Observational Medical Outcomes Partnership. FitzHenry, F; Resnic, F S; Robbins, S L; Denton, J; Nookala, L; Meeker, D; Ohno-Machado, L; Matheny, M E Applied clinical informatics. 26448797 2015;
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Open Knee: Open Source Modeling and Simulation in Knee Biomechanics. Erdemir, Ahmet The journal of knee surgery 26444849 2016 Feb
Structural Neuroimaging Genetics Interactions in Alzheimer's Disease. Moon, Seok Woo; Dinov, Ivo D; Kim, Jaebum; Zamanyan, Alen; Hobel, Sam; Thompson, Paul M; Toga, Arthur W Journal of Alzheimer's disease : JAD. 26444770 2015;
Creation of a new longitudinal corpus of clinical narratives. Kumar, Vishesh; Stubbs, Amber; Shaw, Stanley; Uzuner, Özlem Journal of biomedical informatics. 26433122 2015 Dec;
Bayesian network analysis of multi-compartmentalized immune responses in a murine model of sepsis and direct lung injury. Nemzek, Jean A; Hodges, Andrew P; He, Yongqun BMC research notes. 26423575 2015;
The digital revolution in phenotyping. Oellrich, Anika; Collier, Nigel; Groza, Tudor; Rebholz-Schuhmann, Dietrich; Shah, Nigam; Bodenreider, Olivier; Boland, Mary Regina; Georgiev, Ivo; Liu, Hongfang; Livingston, Kevin; Luna, Augustin; Mallon, Ann-Marie; Manda, Prashanti; Robinson, Peter N; Rustici, Gabriella; Simon, Michelle; Wang, Liqin; Winnenburg, Rainer; Dumontier, Michel Briefings in bioinformatics. 26420780 2016 09;
A gene expression resource generated by genome-wide lacZ profiling in the mouse. Tuck, Elizabeth; Estabel, Jeanne; Oellrich, Anika; Maguire, Anna Karin; Adissu, Hibret A; Souter, Luke; Siragher, Emma; Lillistone, Charlotte; Green, Angela L; Wardle-Jones, Hannah; Carragher, Damian M; Karp, Natasha A; Smedley, Damian; Adams, Niels C; Sa Disease models & mechanisms. 26398943 2015 Nov;
Predicting Drug Response in Human Prostate Cancer from Preclinical Analysis of In Vivo Mouse Models. Mitrofanova, Antonina; Aytes, Alvaro; Zou, Min; Shen, Michael M; Abate-Shen, Cory; Califano, Andrea Cell reports. 26387954 2015 Sep 29;
Recommendations for minimum information for publication of experimental pathology data: MINPEPA guidelines. Scudamore, Cheryl L; Soilleux, Elizabeth J; Karp, Natasha A; Smith, Ken; Poulsom, Richard; Herrington, C Simon; Day, Michael J; Brayton, Cory F; Bolon, Brad; Whitelaw, Bruce; White, Eric S; Everitt, Jeffrey I; Arends, Mark J The Journal of pathology. 26387837 2016 Jan;
Identification and Progression of Heart Disease Risk Factors in Diabetic Patients from Longitudinal Electronic Health Records. Jonnagaddala, Jitendra; Liaw, Siaw-Teng; Ray, Pradeep; Kumar, Manish; Dai, Hong-Jie; Hsu, Chien-Yeh BioMed research international. 26380290 2015;
Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging. Zhang, Fan; Song, Yang; Cai, Weidong; Liu, Sidong; Liu, Siqi; Pujol, Sonia; Kikinis, Ron; Xia, Yong; Fulham, Michael J; Feng, David Dagan; Alzheimers Disease Neuroimaging Initiative IEEE transactions on bio-medical engineering. 26372117 2016 05;
Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies. Winnenburg, Rainer; Sorbello, Alfred; Ripple, Anna; Harpaz, Rave; Tonning, Joseph; Szarfman, Ana; Francis, Henry; Bodenreider, Olivier Journal of biomedical informatics. 26342964 2015 Oct;
Investigating Maternal Brain Structure and its Relationship to Substance Use and Motivational Systems. Rutherford, Helena J V; Gerig, Guido; Gouttard, Sylvain; Potenza, Marc N; Mayes, Linda C The Yale journal of biology and medicine. 26339203 2015 Sep;
DIGGIT: a Bioconductor package to infer genetic variants driving cellular phenotypes. Alvarez, Mariano J; Chen, James C; Califano, Andrea Bioinformatics (Oxford, England). 26338767 2015 Dec 15;
Expanded genetic screening panel for the Ashkenazi Jewish population. Baskovich, Brett; Hiraki, Susan; Upadhyay, Kinnari; Meyer, Philip; Carmi, Shai; Barzilai, Nir; Darvasi, Ariel; Ozelius, Laurie; Peter, Inga; Cho, Judy H; Atzmon, Gil; Clark, Lorraine; Yu, Jin; Lencz, Todd; Pe'er, Itsik; Ostrer, Harry; Oddoux, Carole Genetics in medicine : official journal of the American College of Medical Genetics. 26334176 2016 May;
Identification of Nonresponse to Treatment Using Narrative Data in an Electronic Health Record Inflammatory Bowel Disease Cohort. Ananthakrishnan, Ashwin N; Cagan, Andrew; Cai, Tianxi; Gainer, Vivian S; Shaw, Stanley Y; Savova, Guergana; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Liao, Katherine P; Kohane, Isaac Inflammatory bowel diseases. 26332313 2016 Jan;
Coronary artery disease risk assessment from unstructured electronic health records using text mining. Jonnagaddala, Jitendra; Liaw, Siaw-Teng; Ray, Pradeep; Kumar, Manish; Chang, Nai-Wen; Dai, Hong-Jie Journal of biomedical informatics 26319542 2015 Dec
Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus. Stubbs, Amber; Uzuner, Özlem Journal of biomedical informatics. 26319540 2015 Dec;
Development of A Physical Windkessel Module to Re-Create In-Vivo Vascular Flow Impedance for In-Vitro Experiments. Kung, Ethan O; Taylor, Charles A Cardiovascular engineering and technology 26316899 2011 Mar
CRFs based de-identification of medical records. He, Bin; Guan, Yi; Cheng, Jianyi; Cen, Keting; Hua, Wenlan Journal of biomedical informatics 26315662 2015 Dec
Galectin-3 is a marker of myocardial and vascular fibrosis in Kawasaki disease patients with giant aneurysms. Numano, Fujito; Shimizu, Chisato; Jimenez-Fernandez, Susan; Vejar, Matthew; Oharaseki, Toshiaki; Takahashi, Kei; Salgado, Andrea; Tremoulet, Adriana H; Gordon, John B; Burns, Jane C; Daniels, Lori B International journal of cardiology. 26313861 2015 Dec 15;
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Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts. Liao, Katherine P; Ananthakrishnan, Ashwin N; Kumar, Vishesh; Xia, Zongqi; Cagan, Andrew; Gainer, Vivian S; Goryachev, Sergey; Chen, Pei; Savova, Guergana K; Agniel, Denis; Churchill, Susanne; Lee, Jaeyoung; Murphy, Shawn N; Plenge, Robert M; Szolovits, Peter; Kohane, Isaac; Shaw, Stanley Y; Karlson, Elizabeth W; Cai, Tianxi PloS one. 26301417 2015;
Analyzing Information Seeking and Drug-Safety Alert Response by Health Care Professionals as New Methods for Surveillance. Callahan, Alison; Pernek, Igor; Stiglic, Gregor; Leskovec, Jure; Strasberg, Howard R; Shah, Nigam Haresh Journal of medical Internet research 26293444 2015 Aug 20
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Context Sensitive Modeling of Cancer Drug Sensitivity. Chen, Bo-Juen; Litvin, Oren; Ungar, Lyle; Pe'er, Dana PloS one 26274927 2015
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Sampling from Determinantal Point Processes for Scalable Manifold Learning. Wachinger, Christian; Golland, Polina Information processing in medical imaging : proceedings of the ... conference. 26257500 2015 Jul;
Keypoint Transfer Segmentation. Wachinger, C; Toews, M; Langs, G; Wells, W; Golland, P Information processing in medical imaging : proceedings of the ... conference. 26257499 2015 Jul;
Optimizing Locomotion Controllers Using Biologically-Based Actuators and Objectives. Wang, Jack M; Hamner, Samuel R; Delp, Scott L; Koltun, Vladlen ACM transactions on graphics. 26251560 2012 Jul;
Analysis of the volumetric relationship among human ocular, orbital and fronto-occipital cortical morphology. Masters, Michael; Bruner, Emiliano; Queer, Sarah; Traynor, Sarah; Senjem, Jess Journal of anatomy. 26250048 2015 Oct;
Common Genetic Variants Influence Circulating Vitamin D Levels in Inflammatory Bowel Diseases. Ananthakrishnan, Ashwin N; Cagan, Andrew; Cai, Tianxi; Gainer, Vivian S; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine P; Xavier, Ramnik J Inflammatory bowel diseases. 26241000 2015 Nov;
Novel data-mining approach identifies biomarkers for diagnosis of Kawasaki disease. Tremoulet, Adriana H; Dutkowski, Janusz; Sato, Yuichiro; Kanegaye, John T; Ling, Xuefeng B; Burns, Jane C Pediatric research 26237629 2015 Nov
Depressive symptoms related to low fractional anisotropy of white matter underlying the right ventral anterior cingulate in older adults with atherosclerotic vascular disease. Bijanki, Kelly R; Matsui, Joy T; Mayberg, Helen S; Magnotta, Vincent A; Arndt, Stephan; Johnson, Hans J; Nopoulos, Peg; Paradiso, Sergio; McCormick, Laurie M; Fiedorowicz, Jess G; Epping, Eric A; Moser, David J Frontiers in human neuroscience. 26236221 2015;
Preliminary analysis using multi-atlas labeling algorithms for tracing longitudinal change. Kim, Regina E Y; Lourens, Spencer; Long, Jeffrey D; Paulsen, Jane S; Johnson, Hans J Frontiers in neuroscience. 26236182 2015;
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A method for systematic discovery of adverse drug events from clinical notes. Wang, Guan; Jung, Kenneth; Winnenburg, Rainer; Shah, Nigam H Journal of the American Medical Informatics Association : JAMIA. 26232442 2015 Nov;
Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1. Stubbs, Amber; Kotfila, Christopher; Uzuner, Özlem Journal of biomedical informatics. 26225918 2015 Dec;
Sampling from Determinantal Point Processes for Scalable Manifold Learning. Wachinger, Christian; Golland, Polina Information processing in medical imaging : proceedings of the ... conference. 26221713 2015;
Keypoint Transfer Segmentation. Wachinger, C; Toews, M; Langs, G; Wells, W; Golland, P Information processing in medical imaging : proceedings of the ... conference. 26221677 2015;
Generative Method to Discover Genetically Driven Image Biomarkers. Batmanghelich, Nematollah K; Saeedi, Ardavan; Cho, Michael; Estepar, Raul San Jose; Golland, Polina Information processing in medical imaging : proceedings of the ... conference. 26221665 2015;
Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2. Stubbs, Amber; Kotfila, Christopher; Xu, Hua; Uzuner, Özlem Journal of biomedical informatics. 26210362 2015 Dec;
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Elucidating Compound Mechanism of Action by Network Perturbation Analysis. Woo, Jung Hoon; Shimoni, Yishai; Yang, Wan Seok; Subramaniam, Prem; Iyer, Archana; Nicoletti, Paola; Rodríguez Martínez, María; López, Gonzalo; Mattioli, Michela; Realubit, Ronald; Karan, Charles; Stockwell, Brent R; Bansal, Mukesh; Califano, Andrea Cell. 26186195 2015 Jul 16;
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Prefrontal cortex white matter tracts in prodromal Huntington disease. Matsui, Joy T; Vaidya, Jatin G; Wassermann, Demian; Kim, Regina Eunyoung; Magnotta, Vincent A; Johnson, Hans J; Paulsen, Jane S; PREDICT-HD Investigators and Coordinators of the Huntington Study Group Human brain mapping. 26179962 2015 Oct;
DPSynthesizer: Differentially Private Data Synthesizer for Privacy Preserving Data Sharing. Li, Haoran; Xiong, Li; Zhang, Lifan; Jiang, Xiaoqian Proceedings of the VLDB Endowment International Conference on Very Large Data Bases. 26167358 2014 Aug;
Automated generation of directed graphs from vascular segmentations. Chapman, Brian E; Berty, Holly P; Schulthies, Stuart L Journal of biomedical informatics. 26165778 2015 Aug;
WebDISCO: a web service for distributed cox model learning without patient-level data sharing. Lu, Chia-Lun; Wang, Shuang; Ji, Zhanglong; Wu, Yuan; Xiong, Li; Jiang, Xiaoqian; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA. 26159465 2015 Nov;
United polarizable multipole water model for molecular mechanics simulation. Qi, Rui; Wang, Lee-Ping; Wang, Qiantao; Pande, Vijay S; Ren, Pengyu The Journal of chemical physics 26156485 2015 Jul 07
PRECISE:PRivacy-prEserving Cloud-assisted quality Improvement Service in hEalthcare. Chen, Feng; Wang, Shuang; Mohammed, Noman; Cheng, Samuel; Jiang, Xiaoqian IEEE International Conference on Systems Biology : [proceedings]. IEEE International Conference on Systems Biology. 26146645 2014 Oct;
OpenMM: A Hardware Independent Framework for Molecular Simulations. Eastman, Peter; Pande, Vijay S Computing in science & engineering. 26146490 2015 Jul 1;
The Regulatory Machinery of Neurodegeneration in In??Vitro Models of Amyotrophic Lateral Sclerosis. Ikiz, Burcin; Alvarez, Mariano J; Re, Diane B; Le Verche, Virginia; Politi, Kristin; Lotti, Francesco; Phani, Sudarshan; Pradhan, Radhika; Yu, Changhao; Croft, Gist F; Jacquier, Arnaud; Henderson, Christopher E; Califano, Andrea; Przedborski, Serge Cell reports. 26146077 2015 Jul 14;
XNAT Central: Open sourcing imaging research data. Herrick, Rick; Horton, William; Olsen, Timothy; McKay, Michael; Archie, Kevin A; Marcus, Daniel S NeuroImage. 26143202 2016 Jan 01;
A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research. Meeker, Daniella; Jiang, Xiaoqian; Matheny, Michael E; Farcas, Claudiu; D'Arcy, Michel; Pearlman, Laura; Nookala, Lavanya; Day, Michele E; Kim, Katherine K; Kim, Hyeoneui; Boxwala, Aziz; El-Kareh, Robert; Kuo, Grace M; Resnic, Frederic S; Kesselman, Carl; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA. 26142423 2015 Nov;
Convex Clustering with Exemplar-Based Models. Lashkari, Danial; Golland, Polina Advances in neural information processing systems. 26140013 2007;
Relating Essential Proteins to Drug Side-Effects Using Canonical Component Analysis: A Structure-Based Approach. Liu, Tianyun; Altman, Russ B Journal of chemical information and modeling 26121262 2015 Jul 27
Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies. Lyu, Ilwoo; Kim, Sun H; Seong, Joon-Kyung; Yoo, Sang W; Evans, Alan; Shi, Yundi; Sanchez, Mar; Niethammer, Marc; Styner, Martin A Frontiers in neuroscience. 26113807 2015;
Towards measuring neuroimage misalignment. Garlapati, Revanth Reddy; Mostayed, Ahmed; Joldes, Grand Roman; Wittek, Adam; Doyle, Barry; Miller, Karol Computers in biology and medicine. 26112607 2015 Sep;
ABC transporters and the proteasome complex are implicated in susceptibility to Stevens-Johnson syndrome and toxic epidermal necrolysis across multiple drugs. Nicoletti, Paola; Bansal, Mukesh; Lefebvre, Celine; Guarnieri, Paolo; Shen, Yufeng; Pe'er, Itsik; Califano, Andrea; Floratos, Aris PloS one. 26110827 2015;
Attentional Control and Intelligence: MRI Orbital Frontal Gray Matter and Neuropsychological Correlates. Nestor, Paul G; Nakamura, Motoaki; Niznikiewicz, Margaret; Levitt, James J; Newell, Dominick T; Shenton, Martha E; McCarley, Robert W Behavioural neurology. 26101457 2015;
The immunomodulatory effects of intravenous immunoglobulin therapy in Kawasaki disease. Burns, Jane C; Franco, Alessandra Expert review of clinical immunology. 26099344 2015;
Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis. Levine, Jacob H; Simonds, Erin F; Bendall, Sean C; Davis, Kara L; Amir, El-ad D; Tadmor, Michelle D; Litvin, Oren; Fienberg, Harris G; Jager, Astraea; Zunder, Eli R; Finck, Rachel; Gedman, Amanda L; Radtke, Ina; Downing, James R; Pe'er, Dana; Nolan, Garry Cell. 26095251 2015 Jul 2;
Robust Atlas-Based Segmentation of Highly Variable Anatomy: Left Atrium Segmentation. Depa, Michal; Sabuncu, Mert R; Holmvang, Godtfred; Nezafat, Reza; Schmidt, Ehud J; Golland, Polina Statistical atlases and computational models of the heart : First International Workshop, STACOM 2010, and cardiac electrophysical simulation challenge, CESC 2010, held in conjunction with MICCAI 2010, Beijing, China, September 20, 2010.... 26090522 2010;
Automatic Tissue Segmentation of Neonate Brain MR Images with Subject-specific Atlases. Cherel, Marie; Budin, Francois; Prastawa, Marcel; Gerig, Guido; Lee, Kevin; Buss, Claudia; Lyall, Amanda; Consing, Kirsten Zaldarriaga; Styner, Martin Proceedings of SPIE--the International Society for Optical Engineering. 26089584 2015 Feb 21;
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What Data to Co-register for Computing Atlases. Yeo, B T Thomas; Sabuncu, Mert; Mohlberg, Hartmut; Amunts, Katrin; Zilles, Karl; Golland, Polina; Fischl, Bruce Proceedings / IEEE International Conference on Computer Vision. IEEE International Conference on Computer Vision. 26082678 2007 Oct;
Cortical Folding Development Study based on Over-Complete Spherical Wavelets. Yu, Peng; Yeo, Boon Thye Thomas; Grant, P Ellen; Fischl, Bruce; Golland, Polina Proceedings / IEEE International Conference on Computer Vision. IEEE International Conference on Computer Vision. 26082677 2007 Oct;
Spatial Patterns and Functional Profiles for Discovering Structure in fMRI Data. Golland, Polina; Lashkari, Danial; Venkataraman, Archana Conference record / Asilomar Conference on Signals, Systems & Computers. Asilomar Conference on Signals, Systems & Computers. 26082607 2008 Oct;
A network of molecular switches controls the activation of the two-component response regulator NtrC. Vanatta, Dan K; Shukla, Diwakar; Lawrenz, Morgan; Pande, Vijay S Nature communications. 26073186 2015;
Contour-Driven Atlas-Based Segmentation. Wachinger, Christian; Fritscher, Karl; Sharp, Greg; Golland, Polina IEEE transactions on medical imaging. 26068202 2015 Dec;
Proton Pump Inhibitor Usage and the Risk of Myocardial Infarction in the General Population. Shah, Nigam H; LePendu, Paea; Bauer-Mehren, Anna; Ghebremariam, Yohannes T; Iyer, Srinivasan V; Marcus, Jake; Nead, Kevin T; Cooke, John P; Leeper, Nicholas J PloS one 26061035 2015
Direct ChIP-Seq significance analysis improves target prediction. Bansal, Mukesh; Mendiratta, Geetu; Anand, Santosh; Kushwaha, Ritu; Kim, Ryan; Kustagi, Manju; Iyer, Archana; Chaganti, Raju S K; Califano, Andrea; Sumazin, Pavel BMC genomics. 26040656 2015;
A diffusion tensor MRI atlas of the postmortem rhesus macaque brain. Calabrese, Evan; Badea, Alexandra; Coe, Christopher L; Lubach, Gabriele R; Shi, Yundi; Styner, Martin A; Johnson, G Allan NeuroImage. 26037056 2015 Aug 15;
Affine Registration of label maps in Label Space. Rathi, Yogesh; Malcolm, James; Bouix, Sylvain; Tannenbaum, Allen; Shenton, Martha E Journal of computing. 26029473 2010 Apr;
EXPLORING FUNCTIONAL CONNECTIVITY IN FMRI VIA CLUSTERING. Venkataraman, Archana; Van Dijk, Koene R A; Buckner, Randy L; Golland, Polina Proceedings of the ... IEEE International Conference on Acoustics, Speech, and Signal Processing / sponsored by the Institute of Electrical and Electronics Engineers Signal Processing Society. ICASSP (Conference). 26028993 2009 Apr;
Shape index distribution based local surface complexity applied to the human cortex. Kim, Sun Hyung; Fonov, Vladimir; Collins, D Louis; Gerig, Guido; IBIS Network; Styner, Martin A Proceedings of SPIE--the International Society for Optical Engineering. 26028803 2015;
LOGISMOS-B for Primates: Primate Cortical Surface Reconstruction and Thickness Measurement. Oguz, Ipek; Styner, Martin; Sanchez, Mar; Shi, Yundi; Sonka, Milan Proceedings of SPIE--the International Society for Optical Engineering. 26028802 2015;
Automatic Sulcal Curve Extraction on the Human Cortical Surface. Lyu, Ilwoo; Kim, Sun Hyung; Styner, Martin Proceedings of SPIE--the International Society for Optical Engineering. 26028801 2015;
Annotating risk factors for heart disease in clinical narratives for diabetic patients. Stubbs, Amber; Uzuner, Ozlem Journal of biomedical informatics. 26004790 2015 May 21;
Human Cardiac Function Simulator for the Optimal Design of a Novel Annuloplasty Ring with a Sub-valvular Element for Correction of Ischemic Mitral Regurgitation. Baillargeon, Brian; Costa, Ivan; Leach, Joseph R; Lee, Lik Chuan; Genet, Martin; Toutain, Arnaud; Wenk, Jonathan F; Rausch, Manuel K; Rebelo, Nuno; Acevedo-Bolton, Gabriel; Kuhl, Ellen; Navia, Jose L; Guccione, Julius M Cardiovascular engineering and technology 25984248 2015 Jun
Empirical Transition Probability Indexing Sparse-Coding Belief Propagation (ETPI-SCoBeP) Genome Sequence Alignment. Roozgard, Aminmohammad; Barzigar, Nafise; Wang, Shuang; Jiang, Xiaoqian; Cheng, Samuel Cancer informatics. 25983537 2014;
Building the graph of medicine from millions of clinical narratives. Finlayson, Samuel G; LePendu, Paea; Shah, Nigam H Scientific data. 25977789 2014;
Federated queries of clinical data repositories: Scaling to a national network. Weber, Griffin M Journal of biomedical informatics. 25957825 2015 Jun;
RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity. Pefanis, Evangelos; Wang, Jiguang; Rothschild, Gerson; Lim, Junghyun; Kazadi, David; Sun, Jianbo; Federation, Alexander; Chao, Jaime; Elliott, Oliver; Liu, Zhi-Ping; Economides, Aris N; Bradner, James E; Rabadan, Raul; Basu, Uttiya Cell. 25957685 2015 May 7;
Semi-Supervised Learning to Identify UMLS Semantic Relations. Luo, Yuan; Uzuner, Ozlem AMIA Joint Summits on Translational Science proceedings AMIA Summit on Translational Science. 25954580 2014;
Sharing my health data: a survey of data sharing preferences of healthy individuals. Bell, Elizabeth A; Ohno-Machado, Lucila; Grando, M Adela AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 25954442 2014;
An empirically derived taxonomy of errors in SNOMED CT. Mortensen, Jonathan M; Musen, Mark A; Noy, Natalya F AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 25954397 2014;
Trends in publication of nursing informatics research. Kim, Hyeoneui; Ohno-Machado, Lucila; Oh, Janet; Jiang, Xiaoqian AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 25954387 2014;
Elucidating Ligand-Modulated Conformational Landscape of GPCRs Using Cloud-Computing Approaches. Shukla, Diwakar; Lawrenz, Morgan; Pande, Vijay S Methods in enzymology. 25950981 2015;
An information theoretic method to identify combinations of genomic alterations that promote glioblastoma. Melamed, Rachel D; Wang, Jiguang; Iavarone, Antonio; Rabadan, Raul Journal of molecular cell biology. 25941339 2015 Jun;
Structural Brain Changes in Early-Onset Alzheimer's Disease Subjects Using the LONI Pipeline Environment. Moon, Seok Woo; Dinov, Ivo D; Hobel, Sam; Zamanyan, Alen; Choi, Young Chil; Shi, Ran; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging Initiative Journal of neuroimaging : official journal of the American Society of Neuroimaging. 25940587 2015 Sep;
Altered corpus callosum morphology associated with autism over the first 2 years of life. Wolff, Jason J; Gerig, Guido; Lewis, John D; Soda, Takahiro; Styner, Martin A; Vachet, Clement; Botteron, Kelly N; Elison, Jed T; Dager, Stephen R; Estes, Annette M; Hazlett, Heather C; Schultz, Robert T; Zwaigenbaum, Lonnie; Piven, Joseph; IBIS Network Brain : a journal of neurology. 25937563 2015 Jul;
Bacterial division. Mechanical crack propagation drives millisecond daughter cell separation in Staphylococcus aureus. Zhou, Xiaoxue; Halladin, David K; Rojas, Enrique R; Koslover, Elena F; Lee, Timothy K; Huang, Kerwyn Casey; Theriot, Julie A Science (New York, N.Y.). 25931560 2015 May 1;
Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources. Yu, Sheng; Liao, Katherine P; Shaw, Stanley Y; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi Journal of the American Medical Informatics Association : JAMIA. 25929596 2015 Sep;
Human Endogenous Retrovirus Type K (HERV-K) Particles Package and Transmit HERV-K-Related Sequences. Contreras-Galindo, Rafael; Kaplan, Mark H; Dube, Derek; Gonzalez-Hernandez, Marta J; Chan, Susana; Meng, Fan; Dai, Manhong; Omenn, Gilbert S; Gitlin, Scott D; Markovitz, David M Journal of virology. 25926654 2015 Jul;
Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes. Melamed, Rachel D; Emmett, Kevin J; Madubata, Chioma; Rzhetsky, Andrey; Rabadan, Raul Nature communications. 25926297 2015;
The association between lower educational attainment and depression owing to shared genetic effects? Results in ~25,000 subjects. Peyrot, W J; Lee, S H; Milaneschi, Y; Abdellaoui, A; Byrne, E M; Esko, T; de Geus, E J C; Hemani, G; Hottenga, J J; Kloiber, S; Levinson, D F; Lucae, S; Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium (Corporate Collaborator); M Molecular psychiatry. 25917368 2015 Jun;
Development of phenotype algorithms using electronic medical records and incorporating natural language processing. Liao, Katherine P; Cai, Tianxi; Savova, Guergana K; Murphy, Shawn N; Karlson, Elizabeth W; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Shaw, Stanley Y; Xia, Zongqi; Szolovits, Peter; Churchill, Susanne; Kohane, Isaac BMJ (Clinical research ed.). 25911572 2015;
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Statistical inference for nanopore sequencing with a biased random walk model. Emmett, Kevin J; Rosenstein, Jacob K; van de Meent, Jan-Willem; Shepard, Ken L; Wiggins, Chris H Biophysical journal. 25902425 2015 Apr 21;
Comparison of Twin and Extended Pedigree Designs for Obtaining Heritability Estimates. Docherty, Anna R; Kremen, William S; Panizzon, Matthew S; Prom-Wormley, Elizabeth C; Franz, Carol E; Lyons, Michael J; Eaves, Lindon J; Neale, Michael C Behavior genetics 25894926 2015 Jul
OpenSim: a musculoskeletal modeling and simulation framework for in silico investigations and exchange. Seth, Ajay; Sherman, Michael; Reinbolt, Jeffrey A; Delp, Scott L Procedia IUTAM. 25893160 2011;
BAP1 mutation is a frequent somatic event in peritoneal malignant mesothelioma. Alakus, Hakan; Yost, Shawn E; Woo, Brian; French, Randall; Lin, Grace Y; Jepsen, Kristen; Frazer, Kelly A; Lowy, Andrew M; Harismendy, Olivier Journal of translational medicine. 25889843 2015;
Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks. Repunte-Canonigo, Vez; Shin, William; Vendruscolo, Leandro F; Lefebvre, Celine; van der Stap, Lena; Kawamura, Tomoya; Schlosburg, Joel E; Alvarez, Mariano; Koob, George F; Califano, Andrea; Sanna, Pietro Paolo Genome biology. 25886852 2015;
Grid multi-category response logistic models. Wu, Yuan; Jiang, Xiaoqian; Wang, Shuang; Jiang, Wenchao; Li, Pinghao; Ohno-Machado, Lucila BMC medical informatics and decision making. 25886151 2015;
Convergent mutations and kinase fusions lead to oncogenic STAT3 activation in anaplastic large cell lymphoma. Crescenzo, Ramona; Abate, Francesco; Lasorsa, Elena; Tabbo', Fabrizio; Gaudiano, Marcello; Chiesa, Nicoletta; Di Giacomo, Filomena; Spaccarotella, Elisa; Barbarossa, Luigi; Ercole, Elisabetta; Todaro, Maria; Boi, Michela; Acquaviva, Andrea; Ficarra, Elisa Cancer cell. 25873174 2015 Apr 13;
Normalization of relative and incomplete temporal expressions in clinical narratives. Sun, Weiyi; Rumshisky, Anna; Uzuner, Ozlem Journal of the American Medical Informatics Association : JAMIA. 25868462 2015 Apr 12;
Simbody: multibody dynamics for biomedical research. Sherman, Michael A; Seth, Ajay; Delp, Scott L Procedia IUTAM. 25866705 2011;
Diabetes and the risk of infections with immunomodulator therapy in inflammatory bowel diseases. Ananthakrishnan, A N; Cagan, A; Cai, T; Gainer, V S; Shaw, S Y; Churchill, S; Karlson, E W; Murphy, S N; Kohane, I; Liao, K P Alimentary pharmacology & therapeutics. 25864945 2015 Jun;
Subgraph augmented non-negative tensor factorization (SANTF) for modeling clinical narrative text. Luo, Yuan; Xin, Yu; Hochberg, Ephraim; Joshi, Rohit; Uzuner, Ozlem; Szolovits, Peter Journal of the American Medical Informatics Association : JAMIA. 25862765 2015 Sep;
Neuroinformatics and the The Insight ToolKit. Avants, Brian B; Johnson, Hans J; Tustison, Nicholas J Frontiers in neuroinformatics. 25859213 2015;
Role of TGF-? Signaling in Remodeling of Noncoronary Artery Aneurysms in Kawasaki Disease. Lee, Aaron M; Shimizu, Chisato; Oharaseki, Toshiaki; Takahashi, Kei; Daniels, Lori B; Kahn, Andrew; Adamson, Robert; Dembitsky, Walter; Gordon, John B; Burns, Jane C Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society. 25856633 2015 Jul-Aug;
Mission and Sustainability of Informatics for Integrating Biology and the Bedside (i2b2). Murphy, Shawn; Wilcox, Adam EGEMS (Washington, DC). 25848608 2014;
Development of a web service for analysis in a distributed network. Jiang, Xiaoqian; Wu, Yuan; Marsolo, Keith; Ohno-Machado, Lucila EGEMS (Washington, DC). 25848586 2014;
Predictive simulation generates human adaptations during loaded and inclined walking. Dorn, Tim W; Wang, Jack M; Hicks, Jennifer L; Delp, Scott L PloS one. 25830913 2015;
Comparison of consumers' views on electronic data sharing for healthcare and research. Kim, Katherine K; Joseph, Jill G; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA. 25829461 2015 Jul;
Fine specificities of natural regulatory T cells after IVIG therapy in patients with Kawasaki disease. Burns, Jane C; Touma, Ranim; Song, Yali; Padilla, Robert L; Tremoulet, Adriana H; Sidney, John; Sette, Alessandro; Franco, Alessandra Autoimmunity. 25822882 2015 May;
Patient-Specific Airway Wall Remodeling in Chronic Lung Disease. Eskandari, Mona; Kuschner, Ware G; Kuhl, Ellen Annals of biomedical engineering. 25821112 2015 Oct;
T1? imaging in premanifest Huntington disease reveals changes associated with disease progression. Wassef, Shafik N; Wemmie, John; Johnson, Casey P; Johnson, Hans; Paulsen, Jane S; Long, Jeffrey D; Magnotta, Vincent A Movement disorders : official journal of the Movement Disorder Society. 25820773 2015 Jul;
Variations in the binding pocket of an inhibitor of the bacterial division protein FtsZ across genotypes and species. Miguel, Amanda; Hsin, Jen; Liu, Tianyun; Tang, Grace; Altman, Russ B; Huang, Kerwyn Casey PLoS computational biology. 25811761 2015 Mar;
Ranking adverse drug reactions with crowdsourcing. Gottlieb, Assaf; Hoehndorf, Robert; Dumontier, Michel; Altman, Russ B Journal of medical Internet research. 25800813 2015;
Alternative polyadenylation allows differential negative feedback of human miRNA miR-579 on its host gene ZFR. Hinske, Ludwig Christian; Galante, Pedro A F; Limbeck, Elisabeth; Möhnle, Patrick; Parmigiani, Raphael B; Ohno-Machado, Lucila; Camargo, Anamaria A; Kreth, Simone PloS one. 25799583 2015;
Cardiovascular pathology in 2 young adults with sudden, unexpected death due to coronary aneurysms from Kawasaki disease in childhood. Shimizu, Chisato; Sood, Alka; Lau, Hubert D; Oharaseki, Toshiaki; Takahashi, Kei; Krous, Henry F; Campman, Steven; Burns, Jane C Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology. 25791439 2015 Feb 24;
Assembly and interrogation of Alzheimer's disease genetic networks reveal novel regulators of progression. Aubry, Soline; Shin, William; Crary, John F; Lefort, Roger; Qureshi, Yasir H; Lefebvre, Celine; Califano, Andrea; Shelanski, Michael L PloS one. 25781952 2015;
Quantitative modeling of transcription factor binding specificities using DNA shape. Zhou, Tianyin; Shen, Ning; Yang, Lin; Abe, Namiko; Horton, John; Mann, Richard S; Bussemaker, Harmen J; Gordân, Raluca; Rohs, Remo Proceedings of the National Academy of Sciences of the United States of America. 25775564 2015 Apr 14;
Transient pairing of homologous Oct4 alleles accompanies the onset of embryonic stem cell differentiation. Hogan, Megan S; Parfitt, David-Emlyn; Zepeda-Mendoza, Cinthya J; Shen, Michael M; Spector, David L Cell stem cell. 25748933 2015 Mar 5;
Metabolic modeling of muscle metabolism identifies key reactions linked to insulin resistance phenotypes. Nogiec, Christopher; Burkart, Alison; Dreyfuss, Jonathan M; Lerin, Carles; Kasif, Simon; Patti, Mary-Elizabeth Molecular metabolism 25737951 2015 Mar
High-resolution Genomic Surveillance of 2014 Ebolavirus Using Shared Subclonal Variants. Emmett, Kevin J; Lee, Albert; Khiabanian, Hossein; Rabadan, Raul PLoS currents. 25737802 2015 Feb 09;
Running with a load increases leg stiffness. Silder, Amy; Besier, Thor; Delp, Scott L Journal of biomechanics. 25728581 2015 Apr 13;
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Population-level evidence for an autoimmune etiology of epilepsy. Ong, Mei-Sing; Kohane, Isaac S; Cai, Tianxi; Gorman, Mark P; Mandl, Kenneth D JAMA neurology 24687183 2014 May
Joint modeling of imaging and genetics. Batmanghelich, Nematollah K; Dalca, Adrian V; Sabuncu, Mert R; Polina, Golland; ADNI Information processing in medical imaging : proceedings of the ... conference 24684016 2013
Geodesic shape regression in the framework of currents. Fishbaugh, James; Prastawa, Marcel; Gerig, Guido; Durrleman, Stanley Information processing in medical imaging : proceedings of the ... conference 24684012 2013
Bayesian segmentation of atrium wall using globally-optimal graph cuts on 3D meshes. Veni, Gopalkrishna; Fu, Zhisong; Awate, Suyash P; Whitaker, Ross T Information processing in medical imaging : proceedings of the ... conference 24684007 2013
Group-wise cortical correspondence via sulcal curve-constrained entropy minimization. Lyu, Ilwoo; Kim, Sun Hyung; Seong, Joon-Kyung; Yoo, Sang Wook; Evans, Alan C; Shi, Yundi; Sanchez, Mar; Niethammer, Marc; Styner, Martin A Information processing in medical imaging : proceedings of the ... conference 24683983 2013
Sparse projections of medical images onto manifolds. Chen, George H; Wachinger, Christian; Golland, Polina Information processing in medical imaging : proceedings of the ... conference 24683977 2013
A longitudinal functional analysis framework for analysis of white matter tract statistics. Yuan, Ying; Gilmore, John H; Geng, Xiujuan; Styner, Martin A; Chen, Kehui; Wang, Jane-Ling; Zhu, Hongtu Information processing in medical imaging : proceedings of the ... conference 24683971 2013
Detecting Inappropriate Access to Electronic Health Records Using Collaborative Filtering. Menon, Aditya Krishna; Jiang, Xiaoqian; Kim, Jihoon; Vaidya, Jaideep; Ohno-Machado, Lucila Machine learning 24683293 2014 Apr 1
Aldosterone dysregulation with aging predicts renal vascular function and cardiovascular risk. Brown, Jenifer M; Underwood, Patricia C; Ferri, Claudio; Hopkins, Paul N; Williams, Gordon H; Adler, Gail K; Vaidya, Anand Hypertension 24664291 2014 Jun
Towards Effcient Label Fusion by Pre-Alignment of Training Data. Depa, Michal; Holmvang, Godtfred; Schmidt, Ehud J; Golland, Polina; Sabuncu, Mert R Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 24660167 2011;
Landmark Estimation of Survival and Treatment Effect in a Randomized Clinical Trial. Parast, Layla; Tian, Lu; Cai, Tianxi Journal of the American Statistical Association 24659838 2014 Jan 1
Bayesian energy landscape tilting: towards concordant models of molecular ensembles. Beauchamp, Kyle A; Pande, Vijay S; Das, Rhiju Biophysical journal 24655513 2014 Mar 18
Empirical Bayes methods enable advanced population-level analyses of single-molecule FRET experiments. van de Meent, Jan-Willem; Bronson, Jonathan E; Wiggins, Chris H; Gonzalez Jr, Ruben L Biophysical journal 24655508 2014 Mar 18
Developing image processing meta-algorithms with data mining of multiple metrics. Leung, Kelvin; Cunha, Alexandre; Toga, A W; Parker, D Stott Computational and mathematical methods in medicine 24653748 2014
Cerebral white matter abnormalities and their associations with negative but not positive symptoms of schizophrenia. Asami, Takeshi; Hyuk Lee, Sang; Bouix, Sylvain; Rathi, Yogesh; Whitford, Thomas J; Niznikiewicz, Margaret; Nestor, Paul; McCarley, Robert W; Shenton, Martha E; Kubicki, Marek Psychiatry research 24650453 2014 Apr 30
Higher plasma vitamin D is associated with reduced risk of Clostridium difficile infection in patients with inflammatory bowel diseases. Ananthakrishnan, A N; Cagan, A; Gainer, V S; Cheng, S-C; Cai, T; Szolovits, P; Shaw, S Y; Churchill, S; Karlson, E W; Murphy, S N; Kohane, I; Liao, K P Alimentary pharmacology & therapeutics 24641590 2014 May
Convection-enhanced delivery of etoposide is effective against murine proneural glioblastoma. Sonabend, Adam M; Carminucci, Arthur S; Amendolara, Benjamin; Bansal, Mukesh; Leung, Richard; Lei, Liang; Realubit, Ronald; Li, Hai; Karan, Charles; Yun, Jonathan; Showers, Christopher; Rothcock, Robert; O, Jane; Califano, Andrea; Canoll, Peter; Bruce, Je Neuro-oncology. 24637229 2014 Sep;
High precision prediction of functional sites in protein structures. Buturovic, Ljubomir; Wong, Mike; Tang, Grace W; Altman, Russ B; Petkovic, Dragutin PloS one 24632601 2014
Thromboprophylaxis Is Associated With Reduced Post-hospitalization Venous Thromboembolic Events in Patients With Inflammatory Bowel Diseases. Ananthakrishnan, Ashwin N; Cagan, Andrew; Gainer, Vivian S; Cheng, Su-Chun; Cai, Tianxi; Scoville, Elizabeth; Konijeti, Gauree G; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association 24632349 2014 Mar 12
MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data. Gan, Zhuohui; Wang, Jianwu; Salomonis, Nathan; Stowe, Jennifer C; Haddad, Gabriel G; McCulloch, Andrew D; Altintas, Ilkay; Zambon, Alexander C BMC bioinformatics 24621103 2014
Neuroinformatics challenges to the structural, connectomic, functional and electrophysiological multimodal imaging of human traumatic brain injury. Goh, S Y Matthew; Irimia, Andrei; Torgerson, Carinna M; Horn, John D Van Frontiers in neuroinformatics. 24616696 2014;
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Pregnancy in women with a history of Kawasaki disease: management and outcomes. Gordon, Ct; Jimenez-Fernandez, S; Daniels, Lb; Kahn, Am; Tarsa, M; Matsubara, T; Shimizu, C; Burns, Jc; Gordon, Jb BJOG : an international journal of obstetrics and gynaecology 24597833 2014 Mar 6
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies. Walls, Ramona L; Deck, John; Guralnick, Robert; Baskauf, Steve; Beaman, Reed; Blum, Stanley; Bowers, Shawn; Buttigieg, Pier Luigi; Davies, Neil; Endresen, Dag; Gandolfo, Maria Alejandra; Hanner, Robert; Janning, Alyssa; Krishtalka, Leonard; Matsunaga, And PloS one 24595056 2014
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Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline. Wang, Jiahui; Vachet, Clement; Rumple, Ashley; Gouttard, Sylvain; Ouziel, Clementine; Perrot, Emilie; Du, Guangwei; Huang, Xuemei; Gerig, Guido; Styner, Martin Frontiers in neuroinformatics 24567717 2014
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On the mechanics of growing thin biological membranes. Rausch, Manuel K; Kuhl, Ellen Journal of the mechanics and physics of solids 24563551 2014 Feb 1
Mortality and extraintestinal cancers in patients with primary sclerosing cholangitis and inflammatory bowel disease. Ananthakrishnan, Ashwin N; Cagan, Andrew; Gainer, Vivian S; Cheng, Su-Chun; Cai, Tianxi; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine P Journal of Crohn's & colitis 24559536 2014 Feb 18
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Effects of polymerization and nucleotide identity on the conformational dynamics of the bacterial actin homolog MreB. Colavin, Alexandre; Hsin, Jen; Huang, Kerwyn Casey Proceedings of the National Academy of Sciences of the United States of America 24550504 2014 Mar 4
Genetic lesions associated with chronic lymphocytic leukemia chemo-refractoriness. Messina, Monica; Del Giudice, Ilaria; Khiabanian, Hossein; Rossi, Davide; Chiaretti, Sabina; Rasi, Silvia; Spina, Valeria; Holmes, Antony B; Marinelli, Marilisa; Fabbri, Giulia; Piciocchi, Alfonso; Mauro, Francesca R; Guarini, Anna; Gaidano, Gianluca; Dal Blood 24550227 2014 Apr 10
Annotating the structure and components of a nanoparticle formulation using computable string expressions. Thomas, Dennis G; Chikkagoudar, Satish; Chappell, Alan R; Baker, Nathan A Proceedings. IEEE International Conference on Bioinformatics and Biomedicine. 24533226 2012 Dec 31;
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Rare copy number variation in treatment-resistant major depressive disorder. O'Dushlaine, Colm; Ripke, Stephan; Ruderfer, Douglas M; Hamilton, Steven P; Fava, Maurizio; Iosifescu, Dan V; Kohane, Isaac S; Churchill, Susanne E; Castro, Victor M; Clements, Caitlin C; Blumenthal, Sarah R; Murphy, Shawn N; Smoller, Jordan W; Perlis, Ro Biological psychiatry. 24529801 2014 Oct 1;
DTIPrep: quality control of diffusion-weighted images. Oguz, Ipek; Farzinfar, Mahshid; Matsui, Joy; Budin, Francois; Liu, Zhexing; Gerig, Guido; Johnson, Hans J; Styner, Martin Frontiers in neuroinformatics. 24523693 2014;
hARACNe: improving the accuracy of regulatory model reverse engineering via higher-order data processing inequality tests. Jang, In Sock; Margolin, Adam; Califano, Andrea Interface focus. 24511376 2013 Aug 06;
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Validation of catheter segmentation for MR-guided gynecologic cancer brachytherapy. Pernelle, Guillaume; Mehrtash, Alireza; Barber, Lauren; Damato, Antonio; Wang, Wei; Seethamraju, Ravi Teja; Schmidt, Ehud; Cormack, Robert A; Wells, Williams; Viswanathan, Akila; Kapur, Tina Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 24505784 2013
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Detecting epileptic regions based on global brain connectivity patterns. Sweet, Andrew; Venkataraman, Archana; Stufflebeam, Steven M; Liu, Hesheng; Tanaka, Naoro; Madsen, Joseph; Golland, Polina Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 24505654 2013
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Diagnostic Criteria for Temporomandibular Disorders (DC/TMD) for Clinical and Research Applications: recommendations of the International RDC/TMD Consortium Network* and Orofacial Pain Special Interest Group?. Schiffman, Eric; Ohrbach, Richard; Truelove, Edmond; Look, John; Anderson, Gary; Goulet, Jean-Paul; List, Thomas; Svensson, Peter; Gonzalez, Yoly; Lobbezoo, Frank; Michelotti, Ambra; Brooks, Sharon L; Ceusters, Werner; Drangsholt, Mark; Ettlin, Dominik; Gaul, Charly; Goldberg, Louis J; Haythornthwaite, Jennifer A; Hollender, Lars; Jensen, Rigmor; John, Mike T; De Laat, Antoon; de Leeuw, Reny; Maixner, William; van der Meulen, Marylee; Murray, Greg M; Nixdorf, Donald R; Palla, Sandro; Petersson, Arne; Pionchon, Paul; Smith, Barry; Visscher, Corine M; Zakrzewska, Joanna; Dworkin, Samuel F; International RDC/TMD Consortium Network, International association for Dental Research; Orofacial Pain Special Interest Group, International Association for the Study of Pain Journal of oral & facial pain and headache. 24482784 2014;
Differential privacy based on importance weighting. Ji, Zhanglong; Elkan, Charles Machine learning 24482559 2013 Oct
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A Patient-Specific Segmentation Framework for Longitudinal MR Images of Traumatic Brain Injury. Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Chambers, Micah C; Vespa, Paul M; Van Horn, John D; Gerig, Guido Proceedings - Society of Photo-Optical Instrumentation Engineers 24465115 2012 Mar 23
Web-based tools for modelling and analysis of multivariate data: California ozone pollution activity. Dinov, Ivo D; Christou, Nicolas International journal of mathematical education in science and technology. 24465054 2011 Sep 01;
More accurate neuronavigation data provided by biomechanical modeling instead of rigid registration. Garlapati, Revanth Reddy; Roy, Aditi; Joldes, Grand Roman; Wittek, Adam; Mostayed, Ahmed; Doyle, Barry; Warfield, Simon Keith; Kikinis, Ron; Knuckey, Neville; Bunt, Stuart; Miller, Karol Journal of neurosurgery 24460486 2014 Jun
MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing. Mort, Matthew; Sterne-Weiler, Timothy; Li, Biao; Ball, Edward V; Cooper, David N; Radivojac, Predrag; Sanford, Jeremy R; Mooney, Sean D Genome biology 24451234 2014 Jan 13
MODELING LONGITUDINAL MRI CHANGES IN POPULATIONS USING A LOCALIZED, INFORMATION-THEORETIC MEASURE OF CONTRAST. Vardhan, Avantika; Prastawa, Marcel; Sharma, Anuja; Piven, Joseph; Gerig, Guido Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging 24443698 2013 Dec 31
ANALYZING IMAGING BIOMARKERS FOR TRAUMATIC BRAIN INJURY USING 4D MODELING OF LONGITUDINAL MRI. Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Chambers, Micah C; Sadeghi, Neda; Vespa, Paul M; van Horn, John D; Gerig, Guido Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging 24443697 2013 Dec 31
PROPER ORDERED MESHING OF COMPLEX SHAPES AND OPTIMAL GRAPH CUTS APPLIED TO ATRIAL-WALL SEGMENTATION FROM DE-MRI. Veni, Gopalkrishna; Fu, Zhisong; Awate, Suyash P; Whitaker, Ross T Proceedings. IEEE International Symposium on Biomedical Imaging. 24443695 2013 Dec 31;
SPATIOTEMPORAL MODELING OF DISCRETE-TIME DISTRIBUTION-VALUED DATA APPLIED TO DTI TRACT EVOLUTION IN INFANT NEURODEVELOPMENT. Sharma, Anuja; Fletcher, P Thomas; Gilmore, John H; Escolar, Maria L; Gupta, Aditya; Styner, Martin; Gerig, Guido Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging 24443688 2013 Dec 31
LONGITUDINAL GROWTH MODELING OF DISCRETE-TIME FUNCTIONS WITH APPLICATION TO DTI TRACT EVOLUTION IN EARLY NEURODEVELOPMENT. Sharma, Anuja; Durrleman, Stanley; Gilmore, John H; Gerig, Guido Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging 24443681 2013 Dec 31
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ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state. Chudnovsky, Yakov; Kim, Dohoon; Zheng, Siyuan; Whyte, Warren A; Bansal, Mukesh; Bray, Mark-Anthony; Gopal, Shuba; Theisen, Matthew A; Bilodeau, Steve; Thiru, Prathapan; Muffat, Julien; Yilmaz, Omer H; Mitalipova, Maya; Woolard, Kevin; Lee, Jeongwu; Nishim Cell reports 24440720 2014 Jan 30
Resampling Procedures for Making Inference under Nested Case-control Studies. Cai, Tianxi; Zheng, Yingye Journal of the American Statistical Association 24436503 2013 Jan 1
Automatic lymphoma classification with sentence subgraph mining from pathology reports. Luo, Yuan; Sohani, Aliyah R; Hochberg, Ephraim P; Szolovits, Peter Journal of the American Medical Informatics Association : JAMIA. 24431333 2014 Sep-Oct;
Regional neuroplastic brain changes in patients with chronic inflammatory and non-inflammatory visceral pain. Hong, Jui-Yang; Labus, Jennifer S; Jiang, Zhiguo; Ashe-Mcnalley, Cody; Dinov, Ivo; Gupta, Arpana; Shi, Yonggang; Stains, Jean; Heendeniya, Nuwanthi; Smith, Suzanne R; Tillisch, Kirsten; Mayer, Emeran A PloS one 24416245 2014
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The EBI RDF platform: linked open data for the life sciences. Jupp, Simon; Malone, James; Bolleman, Jerven; Brandizi, Marco; Davies, Mark; Garcia, Leyla; Gaulton, Anna; Gehant, Sebastien; Laibe, Camille; Redaschi, Nicole; Wimalaratne, Sarala M; Martin, Maria; Le Novere, Nicolas; Parkinson, Helen; Birney, Ewan; Jenki Bioinformatics (Oxford, England) 24413672 2014 May 1
Differential-Private Data Publishing Through Component Analysis. Jiang, Xiaoqian; Ji, Zhanglong; Wang, Shuang; Mohammed, Noman; Cheng, Samuel; Ohno-Machado, Lucila Transactions on data privacy 24409205 2013 Apr
UNC-Utah NA-MIC framework for DTI fiber tract analysis. Verde, Audrey R; Budin, Francois; Berger, Jean-Baptiste; Gupta, Aditya; Farzinfar, Mahshid; Kaiser, Adrien; Ahn, Mihye; Johnson, Hans; Matsui, Joy; Hazlett, Heather C; Sharma, Anuja; Goodlett, Casey; Shi, Yundi; Gouttard, Sylvain; Vachet, Clement; Piven, Joseph; Zhu, Hongtu; Gerig, Guido; Styner, Martin Frontiers in neuroinformatics. 24409141 2014;
Serum inflammatory markers and risk of colorectal cancer in patients with inflammatory bowel diseases. Ananthakrishnan, Ashwin N; Cheng, Su-Chun; Cai, Tianxi; Cagan, Andrew; Gainer, Vivian S; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine P Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. 24407106 2014 Aug;
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Fast approximate surface evolution in arbitrary dimension. Malcolm, James; Rathi, Yogesh; Yezzi, Anthony; Tannenbaum, Allen Proceedings of SPIE 24392194 2008 Mar 11
Tissue Tracking: Applications for Brain MRI Classification. Melonakos, John; Gao, Yi; Tannenbaum, Allen Proceedings of SPIE 24392193 2007 Mar 3
UNC-Utah NA-MIC DTI framework: Atlas Based Fiber Tract Analysis with Application to a Study of Nicotine Smoking Addiction. Verde, Audrey R; Berger, Jean-Baptiste; Gupta, Aditya; Farzinfar, Mahshid; Kaiser, Adrien; Chanon, Vicki W; Boettiger, Charlotte; Goodlett, Casey; Shi, Yundi; Zhu, Hongtu; Gerig, Guido; Gouttard, Sylvain; Vachet, Clement; Styner, Martin Proceedings of SPIE 24386543 2013 Mar 13
Studying PubMed usages in the field for complex problem solving: Implications for tool design. Mirel, Barbara; Song, Jean; Tonks, Jennifer Steiner; Meng, Fan; Xuan, Weijian; Ameziane, Rafiqa Journal of the American Society for Information Science and Technology : JASIST 24376375 2013 May 1
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Stochastic Image Registration with User Constraints. Kolesov, Ivan; Lee, Jehoon; Vela, Patricio; Tannenbaum, Allen Proceedings - Society of Photo-Optical Instrumentation Engineers 24357915 2013 Mar 13
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Changes of MR and DTI appearance in early human brain development. Marc, Cassian; Vachet, Clement; Gerig, Guido; Blocher, Joseph; Gilmore, John; Styner, Martin Proceedings - Society of Photo-Optical Instrumentation Engineers 24353378 2010 Mar 12
Evaluation of DTI Property Maps as Basis of DTI Atlas Building. Liu, Zhexing; Goodlett, Casey; Gerig, Guido; Styner, Martin Proceedings - Society of Photo-Optical Instrumentation Engineers 24353377 2010 Mar 12
Towards Analysis of Growth Trajectory through Multi-modal Longitudinal MR Imaging. Sadeghi, Neda; Prastawa, Marcel; Gilmore, John H; Lin, Weili; Gerig, Guido Proceedings - Society of Photo-Optical Instrumentation Engineers 24353376 2010 Mar 12
Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways. Kohlhoff, Kai J; Shukla, Diwakar; Lawrenz, Morgan; Bowman, Gregory R; Konerding, David E; Belov, Dan; Altman, Russ B; Pande, Vijay S Nature chemistry 24345941 2014 Jan
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Localized Statistics for DW-MRI Fiber Bundle Segmentation. Lankton, Shawn; Melonakos, John; Malcolm, James; Dambreville, Samuel; Tannenbaum, Allen Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 23652079 2008
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Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems. Gholami, Behnood; Bailey, James M; Haddad, Wassim M; Tannenbaum, Allen R IEEE transactions on control systems technology : a publication of the IEEE Control Systems Society 23620646 2012 Mar
Optical flow estimation for flame detection in videos. Mueller, Martin; Karasev, Peter; Kolesov, Ivan; Tannenbaum, Allen IEEE transactions on image processing : a publication of the IEEE Signal Processing Society 23613042 2013 Jul
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On the mechanics of continua with boundary energies and growing surfaces. Papastavrou, Areti; Steinmann, Paul; Kuhl, Ellen Journal of the mechanics and physics of solids 23606760 2013 Jun 1
Combining rules and machine learning for extraction of temporal expressions and events from clinical narratives. Kovacevic, Aleksandar; Dehghan, Azad; Filannino, Michele; Keane, John A; Nenadic, Goran Journal of the American Medical Informatics Association : JAMIA 23605114 2013 Apr 20
Heterogeneity of tumor-induced gene expression changes in the human metabolic network. Hu, Jie; Locasale, Jason W; Bielas, Jason H; O'Sullivan, Jacintha; Sheahan, Kieran; Cantley, Lewis C; Heiden, Matthew G Vander; Vitkup, Dennis Nature biotechnology 23604282 2013 Jun
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Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer. Margolin, Adam A; Bilal, Erhan; Huang, Erich; Norman, Thea C; Ottestad, Lars; Mecham, Brigham H; Sauerwine, Ben; Kellen, Michael R; Mangravite, Lara M; Furia, Matthew D; Vollan, Hans Kristian Moen; Rueda, Oscar M; Guinney, Justin; Deflaux, Nicole A; Hoff, Science translational medicine 23596205 2013 Apr 17
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Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways. Rardin, Matthew J; Newman, John C; Held, Jason M; Cusack, Michael P; Sorensen, Dylan J; Li, Biao; Schilling, Birgit; Mooney, Sean D; Kahn, C Ronald; Verdin, Eric; Gibson, Bradford W Proceedings of the National Academy of Sciences of the United States of America 23576753 2013 Apr 16
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Towards improved ultrasound-based analysis and 3D visualization of the fetal brain using the 3D Slicer. Oyama, R; Jakab, M; Kikuchi, A; Sugiyama, T; Kikinis, R; Pujol, S Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology 23576282 2013 Nov
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Natural Language Processing to identify pneumonia from radiology reports. Dublin, Sascha; Baldwin, Eric; Walker, Rod L; Christensen, Lee M; Haug, Peter J; Jackson, Michael L; Nelson, Jennifer C; Ferraro, Jeffrey; Carrell, David; Chapman, Wendy W Pharmacoepidemiology and drug safety 23554109 2013 Aug
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Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines. Sarntivijai, Sirarat; Xiang, Zuoshuang; Shedden, Kerby A; Markel, Howard; Omenn, Gilbert S; Athey, Brian D; He, Yongqun PloS one 23209624 2012
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The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis. Kapur, Tina; Pieper, Steve; Whitaker, Ross; Aylward, Stephen; Jakab, Marianna; Schroeder, Will; Kikinis, Ron Journal of the American Medical Informatics Association : JAMIA 22081219 2012 Mar-Apr
Replication and meta-analysis of the gene-environment interaction between body mass index and the interleukin-6 promoter polymorphism with higher insulin resistance. Underwood, Patricia C; Chamarthi, Bindu; Williams, Jonathan S; Sun, Bei; Vaidya, Anand; Raby, Benjamin A; Lasky-Su, Jessica; Hopkins, Paul N; Adler, Gail K; Williams, Gordon H Metabolism: clinical and experimental 22075267 2012 May
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Empowering industrial research with shared biomedical vocabularies. Harland, Lee; Larminie, Christopher; Sansone, Susanna-Assunta; Popa, Sorana; Marshall, M Scott; Braxenthaler, Michael; Cantor, Michael; Filsell, Wendy; Forster, Mark J; Huang, Enoch; Matern, Andreas; Musen, Mark; Saric, Jasmin; Slater, Ted; Wilson, Jabe; Lynch, Nick; Wise, John; Dix, Ian Drug discovery today. 21963522 2011 Nov;
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Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM. Styner, Martin; Oguz, Ipek; Xu, Shun; Brechbuhler, Christian; Pantazis, Dimitrios; Levitt, James J; Shenton, Martha E; Gerig, Guido The insight journal 21941375 2006
The representation of protein complexes in the Protein Ontology (PRO). Bult, Carol J; Drabkin, Harold J; Evsikov, Alexei; Natale, Darren; Arighi, Cecilia; Roberts, Natalia; Ruttenberg, Alan; D'Eustachio, Peter; Smith, Barry; Blake, Judith A; Wu, Cathy BMC bioinformatics. 21929785 2011 Sep 19;
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Brain surface conformal parameterization with the Ricci flow. Wang, Yalin; Shi, Jie; Yin, Xiaotian; Gu, Xianfeng; Chan, Tony F; Yau, Shing-Tung; Toga, Arthur W; Thompson, Paul M IEEE transactions on medical imaging 21926017 2012 Feb
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Morphometric analysis of subcortical structures in progressive supranuclear palsy: In vivo evidence of neostriatal and mesencephalic atrophy. Looi, Jeffrey C L; Macfarlane, Matthew D; Walterfang, Mark; Styner, Martin; Velakoulis, Dennis; Latt, Jimmy; van Westen, Danielle; Nilsson, Christer Psychiatry research 21899988 2011 Nov 30
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Search for patterns of functional specificity in the brain: a nonparametric hierarchical Bayesian model for group fMRI data. Lashkari, Danial; Sridharan, Ramesh; Vul, Edward; Hsieh, Po-Jang; Kanwisher, Nancy; Golland, Polina NeuroImage 21884803 2012 Jan 16
Robust brain extraction across datasets and comparison with publicly available methods. Iglesias, Juan Eugenio; Liu, Cheng-Yi; Thompson, Paul M; Tu, Zhuowen IEEE transactions on medical imaging 21880566 2011 Sep
Joint modeling of anatomical and functional connectivity for population studies. Venkataraman, Archana; Rathi, Yogesh; Kubicki, Marek; Westin, Carl-Fredrik; Golland, Polina IEEE transactions on medical imaging 21878411 2012 Feb
CYP4A11 T8590C polymorphism, salt-sensitive hypertension, and renal blood flow. Williams, Jonathan S; Hopkins, Paul N; Jeunemaitre, Xavier; Brown, Nancy J Journal of hypertension 21873888 2011 Oct
Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network. Hur, Junguk; Xiang, Zuoshuang; Feldman, Eva L; He, Yongqun BMC immunology 21871085 2011
Modeling diffusion-weighted MRI as a spatially variant gaussian mixture: application to image denoising. Gonzalez, Juan Eugenio Iglesias; Thompson, Paul M; Zhao, Aishan; Tu, Zhuowen Medical physics 21859036 2011 Jul
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Differential effects of the Huntington's disease CAG mutation in striatum and cerebellum are quantitative not qualitative. Fossale, Elisa; Seong, Ihn Sik; Coser, Kathryn R; Shioda, Toshi; Kohane, Isaac S; Wheeler, Vanessa C; Gusella, James F; MacDonald, Marcy E; Lee, Jong-Min Human molecular genetics 21840924 2011 Nov 1
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Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI. Glasser, Matthew F; Van Essen, David C The Journal of neuroscience : the official journal of the Society for Neuroscience 21832190 2011 Aug 10
Comparison of two methods for quantitative assessment of mandibular asymmetry using cone beam computed tomography image volumes. AlHadidi, Abeer; Cevidanes, L H S; Mol, A; Ludlow, J; Styner, M Dento maxillo facial radiology. 21831974 2011 Sep;
Fiber geometry in the corpus callosum in schizophrenia: evidence for transcallosal misconnection. Whitford, Thomas J; Savadjiev, Peter; Kubicki, Marek; O'Donnell, Lauren J; Terry, Douglas P; Bouix, Sylvain; Westin, Carl-Fredrik; Schneiderman, Jason S; Bobrow, Laurel; Rausch, Andrew C; Niznikiewicz, Margaret; Nestor, Paul G; Pantelis, Christos; Wood, S Schizophrenia research 21831601 2011 Oct
Superimposition of 3D cone-beam CT models in orthognathic surgery. da Motta, Alexandre Trindade Simoes; de Assis Ribeiro Carvalho, Felipe; Oliveira, Ana Emilia Figueiredo; Cevidanes, Lucia Helena Soares; de Oliveira Almeida, Marco Antonio Dental press journal of orthodontics. 21814624 2010 Mar 1;
Patients with patellofemoral pain exhibit elevated bone metabolic activity at the patellofemoral joint. Draper, Christine E; Fredericson, Michael; Gold, Garry E; Besier, Thor F; Delp, Scott L; Beaupre, Gary S; Quon, Andrew Journal of orthopaedic research : official publication of the Orthopaedic Research Society 21812024 2012 Feb
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Analysis of the coding genome of diffuse large B-cell lymphoma. Pasqualucci, Laura; Trifonov, Vladimir; Fabbri, Giulia; Ma, Jing; Rossi, Davide; Chiarenza, Annalisa; Wells, Victoria A; Grunn, Adina; Messina, Monica; Elliot, Oliver; Chan, Joseph; Bhagat, Govind; Chadburn, Amy; Gaidano, Gianluca; Mullighan, Charles G; R Nature genetics 21804550 2011 Sep
Applications of the pipeline environment for visual informatics and genomics computations. Dinov, Ivo D; Torri, Federica; Macciardi, Fabio; Petrosyan, Petros; Liu, Zhizhong; Zamanyan, Alen; Eggert, Paul; Pierce, Jonathan; Genco, Alex; Knowles, James A; Clark, Andrew P; Van Horn, John D; Ames, Joseph; Kesselman, Carl; Toga, Arthur W BMC bioinformatics 21791102 2011
Comparison of acute and chronic traumatic brain injury using semi-automatic multimodal segmentation of MR volumes. Irimia, Andrei; Chambers, Micah C; Alger, Jeffry R; Filippou, Maria; Prastawa, Marcel W; Wang, Bo; Hovda, David A; Gerig, Guido; Toga, Arthur W; Kikinis, Ron; Vespa, Paul M; Van Horn, John D Journal of neurotrauma 21787171 2011 Nov
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Quantitative comparison of villin headpiece subdomain simulations and triplet-triplet energy transfer experiments. Beauchamp, Kyle A; Ensign, Daniel L; Das, Rhiju; Pande, Vijay S Proceedings of the National Academy of Sciences of the United States of America 21768345 2011 Aug 2
A generative approach for image-based modeling of tumor growth. Menze, Bjoern H; Van Leemput, Koen; Honkela, Antti; Konukoglu, Ender; Weber, Marc-Andre; Ayache, Nicholas; Golland, Polina Information processing in medical imaging : proceedings of the ... conference 21761700 2011
White matter bundle registration and population analysis based on Gaussian processes. Wassermann, Demian; Rathi, Yogesh; Bouix, Sylvain; Kubicki, Marek; Kikinis, Ron; Shenton, Martha; Westin, Carl-Fredrik Information processing in medical imaging : proceedings of the ... conference 21761667 2011
Learning an atlas of a cognitive process in its functional geometry. Langs, Georg; Lashkari, Danial; Sweet, Andrew; Tie, Yanmei; Rigolo, Laura; Golby, Alexandra J; Golland, Polina Information processing in medical imaging : proceedings of the ... conference 21761652 2011
Optimal data-driven sparse parameterization of diffeomorphisms for population analysis. Durrleman, Sandy; Prastawa, Marcel; Gerig, Guido; Joshi, Sarang Information processing in medical imaging : proceedings of the ... conference 21761651 2011
Adaptive Riemannian metrics for improved geodesic tracking of white matter. Hao, Xiang; Whitaker, Ross T; Fletcher, P Thomas Information processing in medical imaging : proceedings of the ... conference 21761642 2011
Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing. Quinn, T A; Granite, S; Allessie, M A; Antzelevitch, C; Bollensdorff, C; Bub, G; Burton, R A B; Cerbai, E; Chen, P S; Delmar, M; Difrancesco, D; Earm, Y E; Efimov, I R; Egger, M; Entcheva, E; Fink, M; Fischmeister, R; Franz, M R; Garny, A; Giles, W R; Han Progress in biophysics and molecular biology 21745496 2011 Oct
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fMRI of syntactic processing in typically developing children: structural correlates in the inferior frontal gyrus. Nunez, S Christopher; Dapretto, Mirella; Katzir, Tami; Starr, Ariel; Bramen, Jennifer; Kan, Eric; Bookheimer, Susan; Sowell, Elizabeth R Developmental cognitive neuroscience : a journal for cognitive, affective and social developmental neuroscience 21743820 2011 Jul 1
Assessment of mandibular advancement surgery with 3D CBCT models superimposition. Motta, Alexandre Trindade Simões da; de Assis Ribeiro Carvalho, Felipe; Cevidanes, Lúcia Helena Soares; de Oliveira Almeida, Marco Antonio Dental press journal of orthodontics. 21738889 2010 Jan;
Removing Shape-Preserving Transformations in Square-Root Elastic (SRE) Framework for Shape Analysis of Curves. Joshi, Shantanu H; Klassen, Eric; Srivastava, Anuj; Jermyn, Ian Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition 21738385 2007
A knowledge discovery and reuse pipeline for information extraction in clinical notes. Patrick, Jon D; Nguyen, Dung H M; Wang, Yefeng; Li, Min Journal of the American Medical Informatics Association : JAMIA 21737844 2011 Sep-Oct
The Cardiac Atlas Project--an imaging database for computational modeling and statistical atlases of the heart. Fonseca, Carissa G; Backhaus, Michael; Bluemke, David A; Britten, Randall D; Chung, Jae Do; Cowan, Brett R; Dinov, Ivo D; Finn, J Paul; Hunter, Peter J; Kadish, Alan H; Lee, Daniel C; Lima, Joao A C; Medrano-Gracia, Pau; Shivkumar, Kalyanam; Suinesiaputra Bioinformatics (Oxford, England) 21737439 2011 Aug 15
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Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer. Kim, Jung H; Dhanasekaran, Saravana M; Prensner, John R; Cao, Xuhong; Robinson, Daniel; Kalyana-Sundaram, Shanker; Huang, Christina; Shankar, Sunita; Jing, Xiaojun; Iyer, Matthew; Hu, Ming; Sam, Lee; Grasso, Catherine; Maher, Christopher A; Palanisamy, Na Genome research 21724842 2011 Jul
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Dark regions of no-reflow on late gadolinium enhancement magnetic resonance imaging result in scar formation after atrial fibrillation ablation. McGann, Christopher; Kholmovski, Eugene; Blauer, Joshua; Vijayakumar, Sathya; Haslam, Thomas; Cates, Joshua; DiBella, Edward; Burgon, Nathan; Wilson, Brent; Alexander, Alton; Prastawa, Marcel; Daccarett, Marcos; Vergara, Gaston; Akoum, Nazem; Parker, Denn Journal of the American College of Cardiology 21718914 2011 Jul 5
Role of sphingolipids in murine radiation-induced lung injury: protection by sphingosine 1-phosphate analogs. Mathew, Biji; Jacobson, Jeffrey R; Berdyshev, Evgeny; Huang, Yong; Sun, Xiaoguang; Zhao, Yutong; Gerhold, Lynnette M; Siegler, Jessica; Evenoski, Carrie; Wang, Ting; Zhou, Tong; Zaidi, Rafe; Moreno-Vinasco, Liliana; Bittman, Robert; Chen, Chin Tu; LaRivie FASEB journal : official publication of the Federation of American Societies for Experimental Biology 21712494 2011 Oct
RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways. Mitra, Somdeb; Laederach, Alain; Golden, Barbara L; Altman, Russ B; Brenowitz, Michael RNA (New York, N.Y.) 21712400 2011 Aug
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Using machine learning for concept extraction on clinical documents from multiple data sources. Torii, Manabu; Wagholikar, Kavishwar; Liu, Hongfang Journal of the American Medical Informatics Association : JAMIA 21709161 2011 Sep-Oct
Survey of modular ontology techniques and their applications in the biomedical domain. Pathak, Jyotishman; Johnson, Thomas M; Chute, Christopher G Integrated computer-aided engineering 21686030 2009 Aug
Structure-based prediction reveals capping motifs that inhibit ýý-helix aggregation. Bryan Jr, Allen W; Starner-Kreinbrink, Jennifer L; Hosur, Raghavendra; Clark, Patricia L; Berger, Bonnie Proceedings of the National Academy of Sciences of the United States of America 21685332 2011 Jul 5
2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. Uzuner, Ozlem; South, Brett R; Shen, Shuying; DuVall, Scott L Journal of the American Medical Informatics Association : JAMIA 21685143 2011 Sep-Oct
Voxel-based morphometry (VBM) studies in schizophrenia-can white matter changes be reliably detected with VBM? Melonakos, Eric D; Shenton, Martha E; Rathi, Yogesh; Terry, Douglas P; Bouix, Sylvain; Kubicki, Marek Psychiatry research 21684124 2011 Aug 30
Using electronic medical records to enable large-scale studies in psychiatry: treatment resistant depression as a model. Perlis, R H; Iosifescu, D V; Castro, V M; Murphy, S N; Gainer, V S; Minnier, J; Cai, T; Goryachev, S; Zeng, Q; Gallagher, P J; Fava, M; Weilburg, J B; Churchill, S E; Kohane, I S; Smoller, J W Psychological medicine 21682950 2012 Jan
RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples. Alvarez, Angel; Woolf, Peter J BMC bioinformatics 21682879 2011
MarkUs: a server to navigate sequence-structure-function space. Fischer, Markus; Zhang, Qiangfeng Cliff; Dey, Fabian; Chen, Brian Y; Honig, Barry; Petrey, Donald Nucleic acids research 21672961 2011 Jul
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Whetzel, Patricia L; Noy, Natalya F; Shah, Nigam H; Alexander, Paul R; Nyulas, Csongor; Tudorache, Tania; Musen, Mark A Nucleic acids research 21672956 2011 Jul
Using statistical and machine learning to help institutions detect suspicious access to electronic health records. Boxwala, Aziz A; Kim, Jihoon; Grillo, Janice M; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA 21672912 2011 Jul-Aug
Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. Chen, James L; Li, Jianrong; Stadler, Walter M; Lussier, Yves A Journal of the American Medical Informatics Association : JAMIA 21672909 2011 Jul-Aug
2010 translational bioinformatics year in review. Altman, Russ B; Miller, Katharine S Journal of the American Medical Informatics Association : JAMIA 21672905 2011 Jul-Aug
Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured in JAMIA. Butte, Atul J; Shah, Nigam H Journal of the American Medical Informatics Association : JAMIA 21672904 2011 Jul-Aug
Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation. Fabbri, Giulia; Rasi, Silvia; Rossi, Davide; Trifonov, Vladimir; Khiabanian, Hossein; Ma, Jing; Grunn, Adina; Fangazio, Marco; Capello, Daniela; Monti, Sara; Cresta, Stefania; Gargiulo, Ernesto; Forconi, Francesco; Guarini, Anna; Arcaini, Luca; Paulli, Ma The Journal of experimental medicine 21670202 2011 Jul 4
SOCR Analyses: Implementation and Demonstration of a New Graphical Statistics Educational Toolkit. Chu, Annie; Cui, Jenny; Dinov, Ivo D Journal of statistical software 21666874 2009 Apr 1
Enhanced brain connectivity in long-term meditation practitioners. Luders, Eileen; Clark, Kristi; Narr, Katherine L; Toga, Arthur W NeuroImage 21664467 2011 Aug 15
BRAF mutations in hairy-cell leukemia. Tiacci, Enrico; Trifonov, Vladimir; Schiavoni, Gianluca; Holmes, Antony; Kern, Wolfgang; Martelli, Maria Paola; Pucciarini, Alessandra; Bigerna, Barbara; Pacini, Roberta; Wells, Victoria A; Sportoletti, Paolo; Pettirossi, Valentina; Mannucci, Roberta; Ell The New England journal of medicine 21663470 2011 Jun 16
Robust Feature Selection in Resting-State fMRI Connectivity Based on Population Studies. Venkataraman, Archana; Kubicki, Marek; Westin, Carl-Fredrik; Golland, Polina Conference on Computer Vision and Pattern Recognition Workshops IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops 21660131 2010
Rare de novo variants associated with autism implicate a large functional network of genes involved in formation and function of synapses. Gilman, Sarah R; Iossifov, Ivan; Levy, Dan; Ronemus, Michael; Wigler, Michael; Vitkup, Dennis Neuron 21658583 2011 Jun 9
Populations with elevated mutation load do not benefit from the operation of sexual selection. Hollis, B; Houle, D Journal of evolutionary biology 21658188 2011 Sep
Confidence interval based parameter estimation--a new SOCR applet and activity. Christou, Nicolas; Dinov, Ivo D PloS one 21655319 2011
Reconstruction Using Witness Complexes. Guibas, Leonidas J; Oudot, Steve Y Discrete & computational geometry 21643440 2008 Oct 1
Ontological realism: A methodology for coordinated evolution of scientific ontologies. Smith, Barry; Ceusters, Werner Applied ontology 21637730 2010 Nov 15
Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association. Shen, Yufeng; Song, Ruijie; Pe'er, Itsik Bioinformatics (Oxford, England) 21636589 2011 Jul 15
A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas. Farrah, Terry; Deutsch, Eric W; Omenn, Gilbert S; Campbell, David S; Sun, Zhi; Bletz, Julie A; Mallick, Parag; Katz, Jonathan E; Malmstrom, Johan; Ossola, Reto; Watts, Julian D; Lin, Biaoyang; Zhang, Hui; Moritz, Robert L; Aebersold, Ruedi Molecular & cellular proteomics : MCP 21632744 2011 Sep
Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources. Pathak, Jyotishman; Jiang, Guoqian; Dwarkanath, Sridhar O; Buntrock, James D; Chute, Christopher G Proceedings / IEEE International Conference on Semantic Computing ... ICSC. IEEE International Conference on Semantic Computing 21625412 2008 Aug 12
Modular Ontology Techniques and their Applications in the Biomedical Domain. Pathak, Jyotishman; Johnson, Thomas M; Chute, Christopher G Proceedings of the ... IEEE International Conference on Information Reuse and Integration. IEEE International Conference on Information Reuse and Integration 21625409 2008 Aug 5
Modeling of Anatomical Information in Clustering of White Matter Fiber Trajectories Using Dirichlet Distribution. Maddah, Mahnaz; Zollei, Lilla; Grimson, W Eric L; Wells, William M Proceedings / sponsored by IEEE Computer Society Technical Committee on Pattern Analysis and Machine Intelligence. Workshop on Mathematical Methods in Biomedical Image Analysis 21625356 2008 Jul 15
HyQue: evaluating hypotheses using Semantic Web technologies. Callahan, Alison; Dumontier, Michel; Shah, Nigam H Journal of biomedical semantics. 21624158 2011 May 17;
How orthogonal are the OBO Foundry ontologies? Ghazvinian, Amir; Noy, Natalya F; Musen, Mark A Journal of biomedical semantics. 21624157 2011 May 17;
Integration and publication of heterogeneous text-mined relationships on the Semantic Web. Coulet, Adrien; Garten, Yael; Dumontier, Michel; Altman, Russ B; Musen, Mark A; Shah, Nigam H Journal of biomedical semantics. 21624156 2011 May 17;
DASH: a method for identical-by-descent haplotype mapping uncovers association with recent variation. Gusev, Alexander; Kenny, Eimear E; Lowe, Jennifer K; Salit, Jaqueline; Saxena, Richa; Kathiresan, Sekar; Altshuler, David M; Friedman, Jeffrey M; Breslow, Jan L; Pe'er, Itsik American journal of human genetics 21620352 2011 Jun 10
Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks. Alvarez, Angel; Woolf, Peter J BMC systems biology 21619639 2011
Transcriptional profiling of diabetic neuropathy in the BKS db/db mouse: a model of type 2 diabetes. Pande, Manjusha; Hur, Junguk; Hong, Yu; Backus, Carey; Hayes, John M; Oh, Sang Su; Kretzler, Matthias; Feldman, Eva L Diabetes 21617178 2011 Jul
Can biomechanical variables predict improvement in crouch gait? Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael H Gait & posture 21616666 2011 Jun
Variants of the caveolin-1 gene: a translational investigation linking insulin resistance and hypertension. Pojoga, Luminita H; Underwood, Patricia C; Goodarzi, Mark O; Williams, Jonathan S; Adler, Gail K; Jeunemaitre, Xavier; Hopkins, Paul N; Raby, Benjamin A; Lasky-Su, Jessica; Sun, Bei; Cui, Jinrui; Guo, Xiuqing; Taylor, Kent D; Chen, Yii-Der Ida; Xiang, Ann The Journal of clinical endocrinology and metabolism 21613355 2011 Aug
PredUs: a web server for predicting protein interfaces using structural neighbors. Zhang, Qiangfeng Cliff; Deng, Lei; Fisher, Markus; Guan, Jihong; Honig, Barry; Petrey, Donald Nucleic acids research 21609948 2011 Jul
Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization. Luo, Weijun; Friedman, Michael S; Hankenson, Kurt D; Woolf, Peter J BMC systems biology 21605425 2011
Computational modeling of bone density profiles in response to gait: a subject-specific approach. Pang, Henry; Shiwalkar, Abhishek P; Madormo, Chris M; Taylor, Rebecca E; Andriacchi, Thomas P; Kuhl, Ellen Biomechanics and modeling in mechanobiology 21604146 2012 Mar
Law of Large Numbers: the Theory, Applications and Technology-based Education. Dinov, Ivo D; Christou, Nicolas; Gould, Robert Journal of statistics education : an international journal on the teaching and learning of statistics 21603584 2009 Mar
A Study of Students' Learning Styles, Discipline Attitudes and Knowledge Acquisition in Technology-Enhanced Probability and Statistics Education. Christou, Nicolas; Dinov, Ivo D Journal of online learning and teaching / MERLOT 21603097 2010 Sep
Hybrid methods for improving information access in clinical documents: concept, assertion, and relation identification. Minard, Anne-Lyse; Ligozat, Anne-Laure; Ben Abacha, Asma; Bernhard, Delphine; Cartoni, Bruno; Deleger, Louise; Grau, Brigitte; Rosset, Sophie; Zweigenbaum, Pierre; Grouin, Cyril Journal of the American Medical Informatics Association : JAMIA 21597105 2011 Sep-Oct
Regulation of X-chromosome inactivation by the X-inactivation centre. Augui, Sandrine; Nora, Elphege P; Heard, Edith Nature reviews. Genetics 21587299 2011 Jun
Intelligence and cortical thickness in children with complex partial seizures. Tosun, Duygu; Caplan, Rochelle; Siddarth, Prabha; Seidenberg, Michael; Gurbani, Suresh; Toga, Arthur W; Hermann, Bruce NeuroImage 21586333 2011 Jul 15
Estimation of Myocardial Volume at Risk from CT Angiography. Zhu, Liangjia; Gao, Yi; Mohan, Vandana; Stillman, Arthur; Faber, Tracy; Tannenbaum, Allen Proceedings of SPIE--the International Society for Optical Engineering. 21572535 2011 Mar 9;
Mapping corticocortical structural integrity in schizophrenia and effects of genetic liability. Phillips, Owen R; Nuechterlein, Keith H; Asarnow, Robert F; Clark, Kristi A; Cabeen, Ryan; Yang, Yaling; Woods, Roger P; Toga, Arthur W; Narr, Katherine L Biological psychiatry 21571255 2011 Oct 1
Machine-learned solutions for three stages of clinical information extraction: the state of the art at i2b2 2010. de Bruijn, Berry; Cherry, Colin; Kiritchenko, Svetlana; Martin, Joel; Zhu, Xiaodan Journal of the American Medical Informatics Association : JAMIA 21565856 2011 Sep-Oct
Translational bioinformatics: linking knowledge across biological and clinical realms. Sarkar, Indra Neil; Butte, Atul J; Lussier, Yves A; Tarczy-Hornoch, Peter; Ohno-Machado, Lucila Journal of the American Medical Informatics Association : JAMIA 21561873 2011 Jul-Aug
Preliminary evidence of within-subject changes in gray matter density associated with remission of bipolar depression. Brooks 3rd, John O; Foland-Ross, Lara C; Thompson, Paul M; Altshuler, Lori L Psychiatry research 21561743 2011 Jul 30
Diffusion tensor imaging of anterior commissural fibers in patients with schizophrenia. Choi, Hongyoon; Kubicki, Marek; Whitford, Thomas J; Alvarado, Jorge L; Terry, Douglas P; Niznikiewicz, Margaret; McCarley, Robert W; Kwon, Jun Soo; Shenton, Martha E Schizophrenia research 21561738 2011 Aug
Integrated, Multidisciplinary and Technology-Enhanced Science Education: The Next Frontier. Dinov, Ivo D Journal of online learning and teaching / MERLOT 21552453 2008 Mar 1
Enabling enrichment analysis with the Human Disease Ontology. LePendu, Paea; Musen, Mark A; Shah, Nigam H Journal of biomedical informatics 21550421 2011 Dec
SOCR Analyses - an Instructional Java Web-based Statistical Analysis Toolkit. Chu, Annie; Cui, Jenny; Dinov, Ivo D Journal of online learning and teaching / MERLOT 21546994 2009 Mar 1
Early brain overgrowth in autism associated with an increase in cortical surface area before age 2 years. Hazlett, Heather Cody; Poe, Michele D; Gerig, Guido; Styner, Martin; Chappell, Chad; Smith, Rachel Gimpel; Vachet, Clement; Piven, Joseph Archives of general psychiatry 21536976 2011 May
HD CAG-correlated gene expression changes support a simple dominant gain of function. Jacobsen, Jessie C; Gregory, Gillian C; Woda, Juliana M; Thompson, Morgan N; Coser, Kathryn R; Murthy, Vidya; Kohane, Isaac S; Gusella, James F; Seong, Ihn Sik; MacDonald, Marcy E; Shioda, Toshi; Lee, Jong-Min Human molecular genetics 21536587 2011 Jul 15
Spatially regularized compressed sensing for high angular resolution diffusion imaging. Michailovich, Oleg; Rathi, Yogesh; Dolui, Sudipto IEEE transactions on medical imaging 21536524 2011 May
Testing and Validating Machine Learning Classifiers by Metamorphic Testing. Xie, Xiaoyuan; Ho, Joshua W K; Murphy, Christian; Kaiser, Gail; Xu, Baowen; Chen, Tsong Yueh The Journal of systems and software 21532969 2011 Apr 1
The Fok1 vitamin D receptor gene polymorphism is associated with plasma renin activity in Caucasians. Vaidya, Anand; Sun, Bei; Forman, John P; Hopkins, Paul N; Brown, Nancy J; Kolatkar, Nikheel S; Williams, Gordon H; Williams, Jonathan S Clinical endocrinology 21521263 2011 Jun
Clinical application of 3D imaging for assessment of treatment outcomes. Cevidanes, Lucia H C; Oliveira, Ana Emilia Figueiredo; Grauer, Dan; Styner, Martin; Proffit, William R Seminars in orthodontics. 21516170 2011 Mar 1;
In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: a surface-based analysis. Cohen-Adad, J; Benner, T; Greve, D; Kinkel, R P; Radding, A; Fischl, B; Rosen, B R; Mainero, C NeuroImage 21511042 2011 Jul 1
Graphical procedures for evaluating overall and subject-specific incremental values from new predictors with censored event time data. Uno, Hajime; Cai, Tianxi; Tian, Lu; Wei, L J Biometrics 21504421 2011 Dec
Fibre operating lengths of human lower limb muscles during walking. Arnold, Edith M; Delp, Scott L Philosophical transactions of the Royal Society of London. Series B, Biological sciences 21502124 2011 May 27
Three-dimensional quantification of mandibular asymmetry through cone-beam computerized tomography. Cevidanes, Lucia H S; Alhadidi, Abeer; Paniagua, Beatriz; Styner, Martin; Ludlow, John; Mol, Andre; Turvey, Timothy; Proffit, William R; Rossouw, Paul Emile Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics. 21497527 2011 Jun;
Object tracking and target reacquisition based on 3-D range data for moving vehicles. Lee, Jehoon; Lankton, Shawn; Tannenbaum, Allen IEEE transactions on image processing : a publication of the IEEE Signal Processing Society 21486717 2011 Oct
Remote thioredoxin recognition using evolutionary conservation and structural dynamics. Tang, Grace W; Altman, Russ B Structure (London, England : 1993) 21481770 2011 Apr 13
XCEDE: an extensible schema for biomedical data. Gadde, Syam; Aucoin, Nicole; Grethe, Jeffrey S; Keator, David B; Marcus, Daniel S; Pieper, Steve; FBIRN, MBIRN, BIRN-CC Neuroinformatics 21479735 2012 Jan
SOCR Motion Charts: An Efficient, Open-Source, Interactive and Dynamic Applet for Visualizing Longitudinal Multivariate Data. Al-Aziz, Jameel; Christou, Nicolas; Dinov, Ivo D Journal of statistics education : an international journal on the teaching and learning of statistics. 21479108 2010;
Fast approximate stochastic tractography. Iglesias, Juan Eugenio; Thompson, Paul M; Liu, Cheng-Yi; Tu, Zhuowen Neuroinformatics 21476037 2012 Jan
Data Synthesis and Tool Development for Exploring Imaging Genomic Patterns. Kim, Sungeun; Shen, Li; Saykin, Andrew J; West, John D IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology proceedings IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. 21461341 2009 Mar 30;
Aberrantly Expressed Genes in HaCaT Keratinocytes Chronically Exposed to Arsenic Trioxide. Udensi, Udensi K; Cohly, Hari H P; Graham-Evans, Barbara E; Ndebele, Kenneth; Garcia-Reyero, Natàlia; Nanduri, Bindu; Tchounwou, Paul B; Isokpehi, Raphael D Biomarker insights. 21461292 2011 Feb 08;
Configuration Fuzzing for Software Vulnerability Detection. Dai, Huning; Murphy, Christian; Kaiser, Gail Proceedings / The ... International Conference on Availability, Reliability and Security. International Conference on Availability, Reliability and Security 21461049 2010 Feb 15
Hippocampal morphology in lithium and non-lithium-treated bipolar I disorder patients, non-bipolar co-twins, and control twins. van Erp, Theo G M; Thompson, Paul M; Kieseppa, Tuula; Bearden, Carrie E; Marino, Alexandria C; Hoftman, Gil D; Haukka, Jari; Partonen, Timo; Huttunen, Matti; Kaprio, Jaakko; Lonnqvist, Jouko; Poutanen, Veli-Pekka; Toga, Arthur W; Cannon, Tyrone D Human brain mapping. 21455943 2012 Mar;
SOCR: Statistics Online Computational Resource. Dinov, Ivo D Journal of statistical software 21451741 2006 Oct 1
Impact of nonrigid motion correction technique on pixel-wise pharmacokinetic analysis of free-breathing pulmonary dynamic contrast-enhanced MR imaging. Tokuda, Junichi; Mamata, Hatsuho; Gill, Ritu R; Hata, Nobuhiko; Kikinis, Ron; Padera Jr, Robert F; Lenkinski, Robert E; Sugarbaker, David J; Hatabu, Hiroto Journal of magnetic resonance imaging : JMRI 21448965 2011 Apr
Planum temporale grey matter asymmetries in chimpanzees (Pan troglodytes), vervet (Chlorocebus aethiops sabaeus), rhesus (Macaca mulatta) and bonnet (Macaca radiata) monkeys. Lyn, Heidi; Pierre, Peter; Bennett, Allyson J; Fears, Scott; Woods, Roger; Hopkins, William D Neuropsychologia 21447349 2011 Jun
Surface-based TBM boosts power to detect disease effects on the brain: an N=804 ADNI study. Wang, Yalin; Song, Yang; Rajagopalan, Priya; An, Tuo; Liu, Krystal; Chou, Yi-Yu; Gutman, Boris; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative NeuroImage 21440071 2011 Jun 15
In vitro validation of finite-element model of AAA hemodynamics incorporating realistic outlet boundary conditions. Kung, Ethan O; Les, Andrea S; Medina, Francisco; Wicker, Ryan B; McConnell, Michael V; Taylor, Charles A Journal of biomechanical engineering 21428677 2011 Apr
GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. Yang, Xinan; Li, Jianrong; Lee, Younghee; Lussier, Yves A Bioinformatics (Oxford, England) 21421553 2011 May 15
Appearance frequency modulated gene set enrichment testing. Ma, Jun; Sartor, Maureen A; Jagadish, H V BMC bioinformatics 21418606 2011
Regional brain volume reductions relate to facial dysmorphology and neurocognitive function in fetal alcohol spectrum disorders. Roussotte, Florence F; Sulik, Kathleen K; Mattson, Sarah N; Riley, Edward P; Jones, Kenneth L; Adnams, Colleen M; May, Philip A; O'Connor, Mary J; Narr, Katherine L; Sowell, Elizabeth R Human brain mapping 21416562 2012 Apr
AnyExpress: integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm. Kim, Jihoon; Patel, Kiltesh; Jung, Hyunchul; Kuo, Winston P; Ohno-Machado, Lucila BMC bioinformatics 21410990 2011
In vitro validation of finite element analysis of blood flow in deformable models. Kung, Ethan O; Les, Andrea S; Figueroa, C Alberto; Medina, Francisco; Arcaute, Karina; Wicker, Ryan B; McConnell, Michael V; Taylor, Charles A Annals of biomedical engineering 21404126 2011 Jul
The influence of body mass index and renin-angiotensin-aldosterone system activity on the relationship between 25-hydroxyvitamin D and adiponectin in Caucasian men. Vaidya, Anand; Forman, John P; Underwood, Patricia C; Hopkins, Paul N; Williams, Gordon H; Pojoga, Luminita H; Williams, Jonathan S European journal of endocrinology / European Federation of Endocrine Societies 21402748 2011 Jun
Deformation-based morphometry of prospective neurodevelopmental changes in new onset paediatric epilepsy. Tosun, Duygu; Dabbs, Kevin; Caplan, Rochelle; Siddarth, Prabha; Toga, Arthur; Seidenberg, Michael; Hermann, Bruce Brain : a journal of neurology 21398377 2011 Apr
Increased SRF transcriptional activity in human and mouse skeletal muscle is a signature of insulin resistance. Jin, Wanzhu; Goldfine, Allison B; Boes, Tanner; Henry, Robert R; Ciaraldi, Theodore P; Kim, Eun-Young; Emecan, Merve; Fitzpatrick, Connor; Sen, Anish; Shah, Ankit; Mun, Edward; Vokes, Vokes; Schroeder, Joshua; Tatro, Elizabeth; Jimenez-Chillaron, Jose; Pa The Journal of clinical investigation 21393865 2011 Mar
Effects of childhood absence epilepsy on associations between regional cortical morphometry and aging and cognitive abilities. Tosun, Duygu; Siddarth, Prabha; Toga, Arthur W; Hermann, Bruce; Caplan, Rochelle Human brain mapping 21391248 2011 Apr
Mapping between the OBO and OWL ontology languages. Tirmizi, Syed Hamid; Aitken, Stuart; Moreira, Dilvan A; Mungall, Chris; Sequeda, Juan; Shah, Nigam H; Miranker, Daniel P Journal of biomedical semantics. 21388572 2011 Mar 07;
Compressing genomic sequence fragments using SlimGene. Kozanitis, Christos; Saunders, Chris; Kruglyak, Semyon; Bafna, Vineet; Varghese, George Journal of computational biology : a journal of computational molecular cell biology 21385043 2011 Mar
RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS. Wahlby, Carolina; Riklin-Raviv, Tammy; Ljosa, Vebjorn; Conery, Annie L; Golland, Polina; Ausubel, Frederick M; Carpenter, Anne E Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging 21383863 2010 Jun 21
Double dissociation in the anatomy of socioemotional disinhibition and executive functioning in dementia. Krueger, Casey E; Laluz, Victor; Rosen, Howard J; Neuhaus, John M; Miller, Bruce L; Kramer, Joel H Neuropsychology 21381829 2011 Mar
Shape alterations in the striatum in chorea-acanthocytosis. Walterfang, Mark; Looi, Jeffrey Chee Leong; Styner, Martin; Walker, Ruth H; Danek, Adrian; Niethammer, Marc; Evans, Andrew; Kotschet, Katya; Rodrigues, Guilherme R; Hughes, Andrew; Velakoulis, Dennis Psychiatry research 21377843 2011 Apr 30
Automated analysis of fundamental features of brain structures. Lancaster, Jack L; McKay, D Reese; Cykowski, Matthew D; Martinez, Michael J; Tan, Xi; Valaparla, Sunil; Zhang, Yi; Fox, Peter T Neuroinformatics 21360205 2011 Dec
Extraction of Conditional Probabilities of the Relationships Between Drugs, Diseases, and Genes from PubMed Guided by Relationships in PharmGKB. Theobald, Martin; Shah, Nigam; Shrager, Jeff Summit on translational bioinformatics. 21347183 2009;
Toward an ontological treatment of disease and diagnosis. Scheuermann, Richard H; Ceusters, Werner; Smith, Barry Summit on translational bioinformatics. 21347182 2009;
Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. Pantazatos, Spiro P; Li, Jianrong; Pavlidis, Paul; Lussier, Yves A Summit on translational bioinformatics. 21347176 2009 Mar 01;
Integrating automated workflows, human intelligence and collaboration. Mirel, Barbara; Eichinger, Felix; Nair, Viji; Kretzler, Matthias Summit on translational bioinformatics. 21347175 2009 Mar 01;
The open biomedical annotator. Jonquet, Clement; Shah, Nigam H; Musen, Mark A Summit on translational bioinformatics. 21347171 2009;
Comorbidity of bipolar disorder with substance abuse: selection of prioritized genes for translational research. Isokpehi, Raphael D; Lewis, Sharon A; Oyeleye, Tolulola O; Ayensu, Wellington K; Gerald, Tonya M Summit on translational bioinformatics. 21347170 2009 Mar 01;
User requirements for exploring a resource inventory for clinical research. Mirel, Barbara R; Wright, Zachary; Tenenbaum, Jessica D; Saxman, Paul; Smith, Kevin A AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 21347144 2010 Mar 01;
Biomolecular Systems of Disease Buried Across Multiple GWAS Unveiled by Information Theory and Ontology. Lee, Younghee; Li, Jianrong; Gamazon, Eric; Chen, James L; Tikhomirov, Anna; Cox, Nancy J; Lussier, Yves A AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science 21347143 2010
Evaluation of an Ontology-anchored Natural Language-based Approach for Asserting Multi-scale Biomolecular Networks for Systems Medicine. Borlawsky, Tara B; Li, Jianrong; Shagina, Lyudmila; Crowson, Matthew G; Liu, Yang; Friedman, Carol; Lussier, Yves A AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science 21347135 2010
A diagram editor for efficient biomedical knowledge capture and integration. Yu, Bohua; Jakupovic, Elvis; Wilson, Justin; Dai, Manhong; Xuan, Weijian; Mirel, Barbara; Athey, Brian; Watson, Stanley; Meng, Fan Summit on translational bioinformatics. 21347131 2008 Mar 01;
Toward the commoditization of translational genomic research: Design and implementation features of the Galaxy genomic workbench. Lazarus, Ross; Taylor, James; Qiu, Weiliang; Nekrutenko, Anton Summit on translational bioinformatics. 21347127 2008 Mar 01;
A Comprehensive Analysis of Five Million UMLS Metathesaurus Terms Using Eighteen Million MEDLINE Citations. Xu, Rong; Musen, Mark A; Shah, Nigam H AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 21347110 2010;
An ontology-neutral framework for enrichment analysis. Tirrell, Rob; Evani, Uday; Berman, Ari E; Mooney, Sean D; Musen, Mark A; Shah, Nigam H AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 21347088 2010;
CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. Tao, Cui; Wei, Wei-Qi; Solbrig, Harold R; Savova, Guergana; Chute, Christopher G AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 21347086 2010;
The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies. Parai, Gautam K; Jonquet, Clement; Xu, Rong; Musen, Mark A; Shah, Nigam H AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 21347046 2010;
The ontology life cycle: Integrated tools for editing, publishing, peer review, and evolution of ontologies. Noy, Natalya; Tudorache, Tania; Nyulas, Csongor; Musen, Mark AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 21347039 2010;
Automatic Prediction of Conversion from Mild Cognitive Impairment to Probable Alzheimer's Disease using Structural Magnetic Resonance Imaging. Nho, Kwangsik; Shen, Li; Kim, Sungeun; Risacher, Shannon L; West, John D; Foroud, Tatiana; Jack, Clifford R; Weiner, Michael W; Saykin, Andrew J AMIA ... Annual Symposium proceedings. AMIA Symposium. 21347037 2010 Nov 13;
Strobe sequence design for haplotype assembly. Lo, Christine; Bashir, Ali; Bansal, Vikas; Bafna, Vineet BMC bioinformatics 21342554 2011
Identification of common microRNA-mRNA regulatory biomodules in human epithelial cancers. Yang, Xinan; Lee, Younghee; Fan, Hong; Sun, Xiao; Lussier, Yves A Chinese science bulletin = Kexue tongbao 21340045 2010 Nov
Anisotropic Laplace-Beltrami Eigenmaps: Bridging Reeb Graphs and Skeletons. Shi, Yonggang; Lai, Rongjie; Krishna, Sheila; Sicotte, Nancy; Dinov, Ivo; Toga, Arthur W Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 21339850 2008 Jul 15;
LAPLACE-BELTRAMI NODAL COUNTS: A NEW SIGNATURE FOR 3D SHAPE ANALYSIS. Lai, Rongjie; Shi, Yonggang; Dinov, Ivo; Chan, Tony F; Toga, Arthur W Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging. 21339849 2009 Aug 7;
FADTTS: functional analysis of diffusion tensor tract statistics. Zhu, Hongtu; Kong, Linglong; Li, Runze; Styner, Martin; Gerig, Guido; Lin, Weili; Gilmore, John H NeuroImage 21335092 2011 Jun 1
BN+1 Bayesian network expansion for identifying molecular pathway elements. Hodges, Andrew P; Woolf, Peter; He, Yongqun Communicative & integrative biology. 21331236 2010 Nov;
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. Kinsella, Marcus; Harismendy, Olivier; Nakano, Masakazu; Frazer, Kelly A; Bafna, Vineet Bioinformatics (Oxford, England) 21330288 2011 Apr 15
Comprehensive genetic assessment of a functional TLR9 promoter polymorphism: no replicable association with asthma or asthma-related phenotypes. Lange, Nancy E; Zhou, Xiaobo; Lasky-Su, Jessica; Himes, Blanca E; Lazarus, Ross; Soto-Quiros, Manuel; Avila, Lydiana; Celedon, Juan C; Hawrylowicz, Catherine M; Raby, Benjamin A; Litonjua, Augusto A BMC medical genetics 21324137 2011
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Computational modeling of growth: systemic and pulmonary hypertension in the heart. Rausch, M K; Dam, A; Goktepe, S; Abilez, O J; Kuhl, E Biomechanics and modeling in mechanobiology 21188611 2011 Dec
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Quantifying evolvability in small biological networks. Mugler, A; Ziv, E; Nemenman, I; Wiggins, C H IET systems biology 21028928 2009 Sep
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The Protein Ontology: a structured representation of protein forms and complexes. Natale, Darren A; Arighi, Cecilia N; Barker, Winona C; Blake, Judith A; Bult, Carol J; Caudy, Michael; Drabkin, Harold J; D'Eustachio, Peter; Evsikov, Alexei V; Huang, Hongzhan; Nchoutmboube, Jules; Roberts, Natalia V; Smith, Barry; Zhang, Jian; Wu, Cathy H Nucleic acids research. 20935045 2011 Jan;
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Phase II study of neoadjuvant bevacizumab and radiotherapy for resectable soft tissue sarcomas. Yoon, Sam S; Duda, Dan G; Karl, Daniel L; Kim, Tae-Min; Kambadakone, Avinash R; Chen, Yen-Lin; Rothrock, Courtney; Rosenberg, Andrew E; Nielsen, G Petur; Kirsch, David G; Choy, Edwin; Harmon, David C; Hornicek, Francis J; Dreyfuss, Jonathan; Ancukiewicz, International journal of radiation oncology, biology, physics 20932656 2011 Nov 15
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