Bioinformatics and Computational Biology
Bioinformatics and Computational Biology
Program Publications
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The search results on this publication page are automated on a monthly schedule based on acknowledgement of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
| Title | Authors | Journal | PubMedID | Publication Date |
|---|---|---|---|---|
| Infants who develop autism show smaller inventories of deictic and symbolic gestures at 12 months of age. | Wu, Dennis; Wolff, Jason J; Ravi, Shruthi; Elison, Jed T; Estes, Annette; Paterson, Sarah; St John, Tanya; Abdi, Hervé; Moraglia, Luke E; Piven, Joseph; Swanson, Meghan R; IBIS Network | Autism research : official journal of the International Society for Autism Research | 38204321 | 2024 Jan 10 |
| Impact of Eating a Carbohydrate-Restricted Diet on Cortical Atrophy in a Cross-Section of Amyloid Positive Patients with Alzheimer's Disease: A Small Sample Study. | Bramen, Jennifer E; Siddarth, Prabha; Popa, Emily S; Kress, Gavin T; Rapozo, Molly K; Hodes, John F; Ganapathi, Aarthi S; Slyapich, Colby B; Glatt, Ryan M; Pierce, Kyron; Porter, Verna R; Wong, Claudia; Kim, Mihae; Dye, Richelin V; Panos, Stella; Bookheimer, Tess; Togashi, Tori; Loong, Spencer; Raji, Cyrus A; Bookheimer, Susan Y; Roach, Jared C; Merrill, David A | Journal of Alzheimer's disease : JAD | 37742646 | 2023 |
| Are early social communication skills a harbinger for language development in infants later diagnosed autistic?-A longitudinal study using a standardized social communication assessment. | Ravi, Shruthi; Bradshaw, Allison; Abdi, Hervé; Meera, Shoba Sreenath; Parish-Morris, Julia; Yankowitz, Lisa; Paterson, Sarah; Dager, Stephen R; Burrows, Catherine A; Chappell, Chad; St John, Tanya; Estes, Annette M; Piven, Joseph; Swanson, Meghan R; IBIS Network | Frontiers in communication | 37168581 | 2022 |
| Trajectories from Distribution-valued Functional Curves: A Unified Wasserstein Framework★. | Sharma, Anuja; Gerig, Guido | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 36108328 | 2020 Oct |
| Cancer cells depend on environmental lipids for proliferation when electron acceptors are limited. | Li, Zhaoqi; Ji, Brian W; Dixit, Purushottam D; Tchourine, Konstantine; Lien, Evan C; Hosios, Aaron M; Abbott, Keene L; Rutter, Justine C; Westermark, Anna M; Gorodetsky, Elizabeth F; Sullivan, Lucas B; Vander Heiden, Matthew G; Vitkup, Dennis | Nature metabolism | 35739397 | 2022 Jun |
| The GA4GH Phenopacket schema defines a computable representation of clinical data. | Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; Callahan, Tiffany J; Chute, Christopher G; Courtot, Mélanie; Danis, Daniel; Elemento, Olivier; Essenwanger, Andrea; Freimuth, Robert R; Gargano, Michael A; Groza, Tudor; Hamosh, Ada; Harris, Nomi L; Kaliyaperumal, Rajaram; Lloyd, Kevin C Kent; Khalifa, Aly; Krawitz, Peter M; Köhler, Sebastian; Laraway, Brian J; Lehväslaiho, Heikki; Matalonga, Leslie; McMurry, Julie A; Metke-Jimenez, Alejandro; Mungall, Christopher J; Munoz-Torres, Monica C; Ogishima, Soichi; Papakonstantinou, Anastasios; Piscia, Davide; Pontikos, Nikolas; Queralt-Rosinach, Núria; Roos, Marco; Sass, Julian; Schofield, Paul N; Seelow, Dominik; Siapos, Anastasios; Smedley, Damian; Smith, Lindsay D; Steinhaus, Robin; Sundaramurthi, Jagadish Chandrabose; Swietlik, Emilia M; Thun, Sylvia; Vasilevsky, Nicole A; Wagner, Alex H; Warner, Jeremy L; Weiland, Claus; GAGH Phenopacket Modeling Consortium; Haendel, Melissa A; Robinson, Peter N | Nature biotechnology | 35705716 | 2022 Jun |
| An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease. | Ghosh, Pradipta; Katkar, Gajanan D; Shimizu, Chisato; Kim, Jihoon; Khandelwal, Soni; Tremoulet, Adriana H; Kanegaye, John T; Pediatric Emergency Medicine Kawasaki Disease Research Group | Nature communications | 35577777 | 2022 05 16 |
| FYN-TRAF3IP2 induces NF-κB signaling-driven peripheral T cell lymphoma. | Moon, Christine S; Reglero, Clara; Cortes, Jose R; Quinn, S Aidan; Alvarez, Silvia; Zhao, Junfei; Lin, Wen-Hsuan W; Cooke, Anisha J; Abate, Francesco; Soderquist, Craig R; Fiñana, Claudia; Inghirami, Giorgio; Campo, Elias; Bhagat, Govind; Rabadan, Raul; Palomero, Teresa; Ferrando, Adolfo A | Nature cancer | 33928261 | 2021 Jan |
| Mutational and functional genetics mapping of chemotherapy resistance mechanisms in relapsed acute lymphoblastic leukemia. | Oshima, Koichi; Zhao, Junfei; Pérez-Durán, Pablo; Brown, Jessie A; Patiño-Galindo, Juan Angel; Chu, Timothy; Quinn, Aidan; Gunning, Thomas; Belver, Laura; Ambesi-Impiombato, Alberto; Tosello, Valeria; Wang, Zhengqiang; Sulis, Maria Luisa; Kato, Motohiro; Koh, Katsuyoshi; Paganin, Maddalena; Basso, Giuseppe; Balbin, Milagros; Nicolas, Concepcion; Gastier-Foster, Julie M; Devidas, Meenakshi; Loh, Mignon L; Paietta, Elisabeth; Tallman, Martin S; Rowe, Jacob M; Litzow, Mark; Minden, Mark D; Meijerink, Jules; Rabadan, Raul; Ferrando, Adolfo | Nature cancer | 33796864 | 2020 Nov |
| Novel ultra-rare exonic variants identified in a founder population implicate cadherins in schizophrenia. | Lencz, Todd; Yu, Jin; Khan, Raiyan Rashid; Flaherty, Erin; Carmi, Shai; Lam, Max; Ben-Avraham, Danny; Barzilai, Nir; Bressman, Susan; Darvasi, Ariel; Cho, Judy H; Clark, Lorraine N; Gümüş, Zeynep H; Vijai, Joseph; Klein, Robert J; Lipkin, Steven; Offit, Kenneth; Ostrer, Harry; Ozelius, Laurie J; Peter, Inga; Malhotra, Anil K; Maniatis, Tom; Atzmon, Gil; Pe'er, Itsik | Neuron | 33756103 | 2021 05 05 |
| General anaesthesia during infancy reduces white matter micro-organisation in developing rhesus monkeys. | Young, Jeffrey T; Vlasova, Roza M; Howell, Brittany R; Knickmeyer, Rebecca C; Morin, Elyse; Kuitchoua, Kaela I; Lubach, Gabriele R; Noel, Jean; Hu, Xiaoping; Shi, Yundi; Caudill, Gibson; Alexander, Andrew L; Niethammer, Marc; Paule, Merle G; Coe, Christopher L; Sanchez, Mar; Styner, Martin | British journal of anaesthesia | 33549320 | 2021 04 |
| An empirical meta-analysis of the life sciences linked open data on the web. | Kamdar, Maulik R; Musen, Mark A | Scientific data | 33479214 | 2021 01 21 |
| Comprehensive characterization of hepatocyte-derived extracellular vesicles identifies direct miRNA-based regulation of hepatic stellate cells and DAMP-based hepatic macrophage IL-1β and IL-17 upregulation in alcoholic hepatitis mice. | Eguchi, Akiko; Yan, Rui; Pan, Stephanie Q; Wu, Raymond; Kim, Jihoon; Chen, Yibu; Ansong, Charles; Smith, Richard D; Tempaku, Mina; Ohno-Machado, Lucila; Takei, Yoshiyuki; Feldstein, Ariel E; Tsukamoto, Hidekazu | Journal of molecular medicine (Berlin, Germany) | 32556367 | 2020 07 |
| Big Data Privacy in Biomedical Research. | Wang, Shuang; Bonomi, Luca; Dai, Wenrui; Chen, Feng; Cheung, Cynthia; Bloss, Cinnamon S; Cheng, Samuel; Jiang, Xiaoqian | IEEE transactions on big data. | 32478127 | 2020 Jun; |
| Unleashing the value of Common Data Elements through the CEDAR Workbench. | O'Connor, Martin J; Warzel, Denise B; Martínez-Romero, Marcos; Hardi, Josef; Willrett, Debra; Egyedi, Attila L; Eftekhari, Aras; Graybeal, John; Musen, Mark A | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 32308863 | 2019; |
| Active Surveillance of the Implantable Cardioverter-Defibrillator Registry for Defibrillator Lead Failures. | Resnic, Frederic S; Majithia, Arjun; Dhruva, Sanket S; Ssemaganda, Henry; Robbins, Susan; Marinac-Dabic, Danica; Hewitt, Kathleen; Ohno-Machado, Lucila; Reynolds, Matthew R; Matheny, Michael E | Circulation. Cardiovascular quality and outcomes. | 32283971 | 2020 Apr; |
| Sex differences associated with corpus callosum development in human infants: A longitudinal multimodal imaging study. | Schmied, Astrid; Soda, Takahiro; Gerig, Guido; Styner, Martin; Swanson, Meghan R; Elison, Jed T; Shen, Mark D; McKinstry, Robert C; Pruett Jr, John R; Botteron, Kelly N; Estes, Annette M; Dager, Stephen R; Hazlett, Heather C; Schultz, Robert T; Piven, Joseph; Wolff, Jason J; IBIS Network | NeuroImage. | 32276067 | 2020 Jul 15; |
| SlicerDMRI: Diffusion MRI and Tractography Research Software for Brain Cancer Surgery Planning and Visualization. | Zhang, Fan; Noh, Thomas; Juvekar, Parikshit; Frisken, Sarah F; Rigolo, Laura; Norton, Isaiah; Kapur, Tina; Pujol, Sonia; Wells 3rd, William; Yarmarkovich, Alex; Kindlmann, Gordon; Wassermann, Demian; San Jose Estepar, Raul; Rathi, Yogesh; Kikinis, Ron; Johnson, Hans J; Westin, Carl-Fredrik; Pieper, Steve; Golby, Alexandra J; O'Donnell, Lauren J | JCO clinical cancer informatics. | 32216636 | 2020 Mar; |
| A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies. | Degasperi, Andrea; Amarante, Tauanne Dias; Czarnecki, Jan; Shooter, Scott; Zou, Xueqing; Glodzik, Dominik; Morganella, Sandro; Nanda, Arjun S; Badja, Cherif; Koh, Gene; Momen, Sophie E; Georgakopoulos-Soares, Ilias; Dias, João M L; Young, Jamie; Memari, Yasin; Davies, Helen; Nik-Zainal, Serena | Nature cancer | 32118208 | 2020 Feb |
| Social subordination alters estradiol-induced changes in cortico-limbic brain volumes in adult female rhesus monkeys. | Reding, Katherine M; Styner, Martin M; Wilson, Mark E; Toufexis, Donna; Sanchez, Mar M | Psychoneuroendocrinology. | 32023501 | 2020 04; |
| High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP). | Zhang, Yichi; Cai, Tianrun; Yu, Sheng; Cho, Kelly; Hong, Chuan; Sun, Jiehuan; Huang, Jie; Ho, Yuk-Lam; Ananthakrishnan, Ashwin N; Xia, Zongqi; Shaw, Stanley Y; Gainer, Vivian; Castro, Victor; Link, Nicholas; Honerlaw, Jacqueline; Huang, Sicong; Gagnon, David; Karlson, Elizabeth W; Plenge, Robert M; Szolovits, Peter; Savova, Guergana; Churchill, Susanne; O'Donnell, Christopher; Murphy, Shawn N; Gaziano, J Michael; Kohane, Isaac; Cai, Tianxi; Liao, Katherine P | Nature protocols. | 31748751 | 2019 Dec; |
| Enabling Web-scale data integration in biomedicine through Linked Open Data. | Kamdar, Maulik R; Fernández, Javier D; Polleres, Axel; Tudorache, Tania; Musen, Mark A | NPJ digital medicine. | 31531395 | 2019; |
| Building a tobacco user registry by extracting multiple smoking behaviors from clinical notes. | Palmer, Ellen L; Hassanpour, Saeed; Higgins, John; Doherty, Jennifer A; Onega, Tracy | BMC medical informatics and decision making. | 31340796 | 2019 Jul 25; |
| Machine Learning-Based Predictive Modeling of Surgical Intervention in Glaucoma Using Systemic Data From Electronic Health Records. | Baxter, Sally L; Marks, Charles; Kuo, Tsung-Ting; Ohno-Machado, Lucila; Weinreb, Robert N | American journal of ophthalmology. | 31323204 | 2019 Dec; |
| Precursor-induced conditional random fields: connecting separate entities by induction for improved clinical named entity recognition. | Lee, Wangjin; Choi, Jinwook | BMC medical informatics and decision making. | 31307440 | 2019 07 15; |
| Early language exposure supports later language skills in infants with and without autism. | Swanson, Meghan R; Donovan, Kevin; Paterson, Sarah; Wolff, Jason J; Parish-Morris, Julia; Meera, Shoba S; Watson, Linda R; Estes, Annette M; Marrus, Natasha; Elison, Jed T; Shen, Mark D; McNeilly, Heidi B; MacIntyre, Leigh; Zwaigenbaum, Lonnie; St John, Tanya; Botteron, Kelly; Dager, Stephen; Piven, Joseph; IBIS Network | Autism research : official journal of the International Society for Autism Research. | 31254329 | 2019 Dec; |
| Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. | Martínez-Romero, Marcos; O'Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Hardi, Josef; Graybeal, John; Musen, Mark A | Database : the journal of biological databases and curation. | 31210270 | 2019 01 01; |
| Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis. | Neri, Tui; Hiriart, Emilye; van Vliet, Patrick P; Faure, Emilie; Norris, Russell A; Farhat, Batoul; Jagla, Bernd; Lefrancois, Julie; Sugi, Yukiko; Moore-Morris, Thomas; Zaffran, Stéphane; Faustino, Randolph S; Zambon, Alexander C; Desvignes, Jean-Pierre; | Nature communications. | 31028265 | 2019 04 26; |
| Developing a portable natural language processing based phenotyping system. | Sharma, Himanshu; Mao, Chengsheng; Zhang, Yizhen; Vatani, Haleh; Yao, Liang; Zhong, Yizhen; Rasmussen, Luke; Jiang, Guoqian; Pathak, Jyotishman; Luo, Yuan | BMC medical informatics and decision making. | 30943974 | 2019 Apr 04; |
| Clinical text classification with rule-based features and knowledge-guided convolutional neural networks. | Yao, Liang; Mao, Chengsheng; Luo, Yuan | BMC medical informatics and decision making. | 30943960 | 2019 Apr 04; |
| Activation of hedgehog signaling associates with early disease progression in chronic lymphocytic leukemia. | Ghia, Emanuela M; Rassenti, Laura Z; Neuberg, Donna S; Blanco, Alejandro; Yousif, Fouad; Smith, Erin N; McPherson, John D; Hudson, Thomas J; HALT Pan-Leukemia Gene Panel Consortium; Harismendy, Olivier; Frazer, Kelly A; Kipps, Thomas J | Blood. | 30923040 | 2019 Jun 20; |
| ACTIVE LEARNING GUIDED INTERACTIONS FOR CONSISTENT IMAGE SEGMENTATION WITH REDUCED USER INTERACTIONS. | Veeraraghavan, Harini; Miller, James V | Proceedings. IEEE International Symposium on Biomedical Imaging. | 30881602 | 2011 Mar-Apr; |
| Distributed learning from multiple EHR databases: Contextual embedding models for medical events. | Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, Qi | Journal of biomedical informatics. | 30825539 | 2019 Apr; |
| A Preliminary Study of Clinical Concept Detection Using Syntactic Relations. | Torii, Manabu; Yang, Elly W; Doan, Son | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 30815146 | 2018; |
| Ensemble-based Methods to Improve De-identification of Electronic Health Record Narratives. | Kim, Youngjun; Heider, Paul; Meystre, Stéphane | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 30815108 | 2018; |
| Negative Regulation of Cytosolic Sensing of DNA. | Abe, Takayuki; Shapira, Sagi D | International review of cell and molecular biology. | 30798991 | 2019; |
| The variable quality of metadata about biological samples used in biomedical experiments. | Gonçalves, Rafael S; Musen, Mark A | Scientific data. | 30778255 | 2019 Feb 19; |
| Impact of aeration change and beam arrangement on the robustness of proton plans. | Shusharina, Nadya; Fullerton, Barbara; Adams, Judy A; Sharp, Gregory C; Chan, Annie W | Journal of applied clinical medical physics. | 30756466 | 2019 Mar; |
| Unsupervised concept extraction from clinical text through semantic composition. | Tulkens, Stéphan; ?uster, Simon; Daelemans, Walter | Journal of biomedical informatics. | 30753949 | 2019 03; |
| Classifying relations in clinical narratives using segment graph convolutional and recurrent neural networks (Seg-GCRNs). | Li, Yifu; Jin, Ran; Luo, Yuan | Journal of the American Medical Informatics Association : JAMIA. | 30590613 | 2019 Mar 01; |
| Qualitative analysis of manual annotations of clinical text with SNOMED CT. | Miñarro-Giménez, Jose Antonio; Martínez-Costa, Catalina; Karlsson, Daniel; Schulz, Stefan; Gøeg, Kirstine Rosenbeck | PloS one. | 30589855 | 2018; |
| Group-wise Shape Correspondence of Variable and Complex Objects. | Lyu, Ilwoo; Perdomo, Jonathan; Yapuncich, Gabriel S; Paniagua, Beatriz; Boyer, Doug M; Styner, Martin A | Proceedings of SPIE--the International Society for Optical Engineering. | 30381780 | 2018 Mar; |
| Quantitative tract-based white matter heritability in 1- and 2-year-old twins. | Lee, Seung Jae; Zhang, Jingwen; Neale, Michael C; Styner, Martin; Zhu, Hongtu; Gilmore, John H | Human brain mapping. | 30368980 | 2019 03; |
| Secure large-scale genome data storage and query. | Chen, Luyao; Aziz, Md Momin; Mohammed, Noman; Jiang, Xiaoqian | Computer methods and programs in biomedicine. | 30337067 | 2018 Oct; |
| OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. | Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi | PLoS computational biology. | 30048444 | 2018 07; |
| Keypoint Transfer for Fast Whole-Body Segmentation. | Wachinger, Christian; Toews, Matthew; Langs, Georg; Wells, William; Golland, Polina | IEEE transactions on medical imaging. | 29994670 | 2018 Jun 27; |
| 4D CONTINUOUS MEDIAL REPRESENTATION BY GEODESIC SHAPE REGRESSION. | Hong, Sungmin; Fishbaugh, James; Gerig, Guido | Proceedings. IEEE International Symposium on Biomedical Imaging. | 29973975 | 2018 Apr; |
| Duodenal-Jejunal Flexure GI Stromal Tumor Frequently Heralds Somatic NF1 and Notch Pathway Mutations. | Burgoyne, Adam M; De Siena, Martina; Alkhuziem, Maha; Tang, Chih-Min; Medina, Benjamin; Fanta, Paul T; Belinsky, Martin G; von Mehren, Margaret; Thorson, John A; Madlensky, Lisa; Bowler, Timothy; D'Angelo, Francesco; Stupack, Dwayne G; Harismendy, Olivier | JCO precision oncology. | 29938249 | 2017; |
| Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. | Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, Jaideep | IEEE internet computing. | 29867290 | 2018 Mar-Apr; |
| Association between inflammation and systolic blood pressure in RA compared to patients without RA. | Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine P | Arthritis research & therapy. | 29855349 | 2018 Jun 01; |
| A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. | Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 29854240 | 2017; |
| Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. | Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark A | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 29854196 | 2017; |
| Exploiting Unlabeled Texts with Clustering-based Instance Selection for Medical Relation Classification. | Kim, Youngjun; Riloff, Ellen; Meystre, Stéphane M | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 29854174 | 2017; |
| Mechanism-based Pharmacovigilance over the Life Sciences Linked Open Data Cloud. | Kamdar, Maulik R; Musen, Mark A | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 29854169 | 2017; |
| PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. | Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine P | Journal of the American Medical Informatics Association : JAMIA. | 29788308 | 2018 10 01; |
| Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. | Agniel, Denis; Kohane, Isaac S; Weber, Griffin M | BMJ (Clinical research ed.). | 29712648 | 2018 04 30; |
| High-depth whole genome sequencing of an Ashkenazi Jewish reference panel: enhancing sensitivity, accuracy, and imputation. | Lencz, Todd; Yu, Jin; Palmer, Cameron; Carmi, Shai; Ben-Avraham, Danny; Barzilai, Nir; Bressman, Susan; Darvasi, Ariel; Cho, Judy H; Clark, Lorraine N; Gümü?, Zeynep H; Joseph, Vijai; Klein, Robert; Lipkin, Steven; Offit, Kenneth; Ostrer, Harry; Ozelius, | Human genetics. | 29705978 | 2018 Apr; |
| Analyzing user interactions with biomedical ontologies: A visual perspective. | Kamdar, Maulik R; Walk, Simon; Tudorache, Tania; Musen, Mark A | Web semantics (Online). | 29657560 | 2018 Mar; |
| Privacy-Preserving Patient Similarity Learning in a Federated Environment: Development and Analysis. | Lee, Junghye; Sun, Jimeng; Wang, Fei; Wang, Shuang; Jun, Chi-Hyuck; Jiang, Xiaoqian | JMIR medical informatics. | 29653917 | 2018 Apr 13; |
| BiOnIC: A Catalog of User Interactions with Biomedical Ontologies. | Kamdar, Maulik R; Walk, Simon; Tudorache, Tania; Musen, Mark A | The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference. | 29637199 | 2017 Oct; |
| Development of White Matter Circuitry in Infants With Fragile X Syndrome. | Swanson, Meghan R; Wolff, Jason J; Shen, Mark D; Styner, Martin; Estes, Annette; Gerig, Guido; McKinstry, Robert C; Botteron, Kelly N; Piven, Joseph; Hazlett, Heather C; Infant Brain Imaging Study (IBIS) Network | JAMA psychiatry. | 29617515 | 2018 05 01; |
| Subcortical Brain and Behavior Phenotypes Differentiate Infants With Autism Versus Language Delay. | Swanson, Meghan R; Shen, Mark D; Wolff, Jason J; Elison, Jed T; Emerson, Robert W; Styner, Martin A; Hazlett, Heather C; Truong, Kinh; Watson, Linda R; Paterson, Sarah; Marrus, Natasha; Botteron, Kelly N; Pandey, Juhi; Schultz, Robert T; Dager, Stephen R; | Biological psychiatry. Cognitive neuroscience and neuroimaging. | 29560900 | 2017 11; |
| Compressive Sensing Based Q-Space Resampling for Handling Fast Bulk Motion in Hardi Acquisitions. | Elhabian, Shireen; Vachet, Clement; Piven, Joseph; for IBIS; Styner, Martin; Gerig, Guido | Proceedings. IEEE International Symposium on Biomedical Imaging. | 29492184 | 2016; |
| PhLeGrA: Graph Analytics in Pharmacology over the Web of Life Sciences Linked Open Data. | Kamdar, Maulik R; Musen, Mark A | Proceedings of the ... International World-Wide Web Conference. International WWW Conference. | 29479581 | 2017 Apr; |
| Annual Burden and Costs of Hospitalization for High-Need, High-Cost Patients with Chronic Gastrointestinal and Liver Diseases. | Nguyen, Nghia H; Khera, Rohan; Ohno-Machado, Lucila; Sandborn, William J; Singh, Siddharth | Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. | 29474966 | 2018 Feb 20; |
| Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations. | Azad, Robert N; Zafiropoulos, Dana; Ober, Douglas; Jiang, Yining; Chiu, Tsu-Pei; Sagendorf, Jared M; Rohs, Remo; Tullius, Thomas D | Nucleic acids research. | 29390080 | 2018 Jan 30; |
| Functional variants in the LRRK2 gene confer shared effects on risk for Crohn's disease and Parkinson's disease. | Hui, Ken Y; Fernandez-Hernandez, Heriberto; Hu, Jianzhong; Schaffner, Adam; Pankratz, Nathan; Hsu, Nai-Yun; Chuang, Ling-Shiang; Carmi, Shai; Villaverde, Nicole; Li, Xianting; Rivas, Manual; Levine, Adam P; Bao, Xiuliang; Labrias, Philippe R; Haritunians, | Science translational medicine. | 29321258 | 2018 01 10; |
| Investigating the association between parity and the maternal neural response to infant cues. | Maupin, Angela N; Rutherford, Helena J V; Landi, Nicole; Potenza, Marc N; Mayes, Linda C | Social neuroscience. | 29291661 | 2019 04; |
| Homeostatic Cell Growth Is Accomplished Mechanically through Membrane Tension Inhibition of Cell-Wall Synthesis. | Rojas, Enrique R; Huang, Kerwyn Casey; Theriot, Julie A | Cell systems. | 29203279 | 2017 Dec 27; |
| Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach. | Weng, Wei-Hung; Wagholikar, Kavishwar B; McCray, Alexa T; Szolovits, Peter; Chueh, Henry C | BMC medical informatics and decision making. | 29191207 | 2017 Dec 01; |
| PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens. | Spahn, Philipp N; Bath, Tyler; Weiss, Ryan J; Kim, Jihoon; Esko, Jeffrey D; Lewis, Nathan E; Harismendy, Olivier | Scientific reports. | 29158538 | 2017 Nov 20; |
| Asymmetric and Symmetric Unbiased Image Registration: Statistical Assessment of Performance. | Yanovsky, Igor; Thompson, Paul M; Osher, Stanley; Leow, Alex D | Conference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops. | 29152411 | 2008 Jun; |
| A Likelihood-Free Approach for Characterizing Heterogeneous Diseases in Large-Scale Studies. | Schabdach, Jenna; Wells 3rd, William M; Cho, Michael; Batmanghelich, Kayhan N | Information processing in medical imaging : proceedings of the ... conference. | 29129964 | 2017 Jun; |
| Enabling phenotypic big data with PheNorm. | Yu, Sheng; Ma, Yumeng; Gronsbell, Jessica; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Liao, Katherine P; Cai, Tianxi | Journal of the American Medical Informatics Association : JAMIA. | 29126253 | 2018 01 01; |
| SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research. | Norton, Isaiah; Essayed, Walid Ibn; Zhang, Fan; Pujol, Sonia; Yarmarkovich, Alex; Golby, Alexandra J; Kindlmann, Gordon; Wassermann, Demian; Estepar, Raul San Jose; Rathi, Yogesh; Pieper, Steve; Kikinis, Ron; Johnson, Hans J; Westin, Carl-Fredrik; O'Donnell, Lauren J | Cancer research. | 29092950 | 2017 11 01; |
| Temporal Annotation in the Clinical Domain. | Styler 4th, William F; Bethard, Steven; Finan, Sean; Palmer, Martha; Pradhan, Sameer; de Groen, Piet C; Erickson, Brad; Miller, Timothy; Lin, Chen; Savova, Guergana; Pustejovsky, James | Transactions of the Association for Computational Linguistics. | 29082229 | 2014 Apr; |
| The MELD-Plus: A generalizable prediction risk score in cirrhosis. | Kartoun, Uri; Corey, Kathleen E; Simon, Tracey G; Zheng, Hui; Aggarwal, Rahul; Ng, Kenney; Shaw, Stanley Y | PloS one. | 29069090 | 2017; |
| Semantic Modeling for Exposomics with Exploratory Evaluation in Clinical Context. | Fan, Jung-Wei; Li, Jianrong; Lussier, Yves A | Journal of healthcare engineering. | 29065591 | 2017; |
| Traumatic Brain Injury Severity, Neuropathophysiology, and Clinical Outcome: Insights from Multimodal Neuroimaging. | Irimia, Andrei; Goh, Sheng-Yang Matthew; Wade, Adam C; Patel, Kavi; Vespa, Paul M; Van Horn, John D | Frontiers in neurology. | 29051745 | 2017; |
| Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies. | Wang, Meng; Ji, Zhanglong; Wang, Shuang; Kim, Jihoon; Yang, Hai; Jiang, Xiaoqian; Ohno-Machado, Lucila | Bioinformatics (Oxford, England). | 29036461 | 2017 Dec 01; |
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| Amino Acids Rather than Glucose Account for the Majority of Cell Mass in Proliferating Mammalian Cells. | Hosios, Aaron M; Hecht, Vivian C; Danai, Laura V; Johnson, Marc O; Rathmell, Jeffrey C; Steinhauser, Matthew L; Manalis, Scott R; Vander Heiden, Matthew G | Developmental cell. | 26954548 | 2016 Mar 07; |
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| Comparative Effectiveness of Infliximab and Adalimumab in Crohn's Disease and Ulcerative Colitis. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Cai, Tianxi; Gainer, Vivian S; Shaw, Stanley Y; Savova, Guergana; Churchill, Susanne; Karlson, Elizabeth W; Kohane, Isaac; Liao, Katherine P; Murphy, Shawn N | Inflammatory bowel diseases. | 26933751 | 2016 Apr; |
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| Statin Use Is Associated With Reduced Risk of Colorectal Cancer in Patients With Inflammatory Bowel Diseases. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Cai, Tianxi; Gainer, Vivian S; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Liao, Katherine P; Kohane, Isaac | Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. | 26905907 | 2016 Jul; |
| Apathy Is Associated With Ventral Striatum Volume in Schizophrenia Spectrum Disorder. | Roth, Robert M; Garlinghouse, Matthew A; Flashman, Laura A; Koven, Nancy S; Pendergrass, J Cara; Ford, James C; McAllister, Thomas W; Saykin, Andrew J | The Journal of neuropsychiatry and clinical neurosciences. | 26900738 | 2016; |
| BFLCRM: A BAYESIAN FUNCTIONAL LINEAR COX REGRESSION MODEL FOR PREDICTING TIME TO CONVERSION TO ALZHEIMER'S DISEASE. | Lee, Eunjee; Zhu, Hongtu; Kong, Dehan; Wang, Yalin; Giovanello, Kelly Sullivan; Ibrahim, Joseph G | The annals of applied statistics. | 26900412 | 2015 Dec; |
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| Comparing high-dimensional confounder control methods for rapid cohort studies from electronic health records. | Low, Yen Sia; Gallego, Blanca; Shah, Nigam Haresh | Journal of comparative effectiveness research. | 26634383 | 2016 Mar; |
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| Inter- and intra-patient clonal and subclonal heterogeneity of chronic lymphocytic leukaemia: evidences from circulating and lymph nodal compartments. | Del Giudice, Ilaria; Marinelli, Marilisa; Wang, Jiguang; Bonina, Silvia; Messina, Monica; Chiaretti, Sabina; Ilari, Caterina; Cafforio, Luciana; Raponi, Sara; Mauro, Francesca Romana; Di Maio, Valeria; De Propris, Maria Stefania; Nanni, Mauro; Ciardullo, Carmela; Rossi, Davide; Gaidano, Gianluca; Guarini, Anna; Rabadan, Raul; Foà, Robin | British journal of haematology. | 26597680 | 2016 Feb; |
| Elucidation and Pharmacological Targeting of Novel Molecular Drivers of Follicular Lymphoma Progression. | Bisikirska, Brygida; Bansal, Mukesh; Shen, Yao; Teruya-Feldstein, Julie; Chaganti, Raju; Califano, Andrea | Cancer research. | 26589882 | 2016 Feb 1; |
| Trends in biomedical informatics: automated topic analysis of JAMIA articles. | Han, Dong; Wang, Shuang; Jiang, Chao; Jiang, Xiaoqian; Kim, Hyeon-Eui; Sun, Jimeng; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 26555018 | 2015 Nov; |
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| Development and Validation of an Algorithm to Identify Nonalcoholic Fatty Liver Disease in the Electronic Medical Record. | Corey, Kathleen E; Kartoun, Uri; Zheng, Hui; Shaw, Stanley Y | Digestive diseases and sciences. | 26537487 | 2016 Mar; |
| SPReM: Sparse Projection Regression Model For High-dimensional Linear Regression. | Sun, Qiang; Zhu, Hongtu; Liu, Yufeng; Ibrahim, Joseph G; Alzheimer?;s Disease Neuroimaging Initiative | Journal of the American Statistical Association. | 26527844 | 2015; |
| Three-dimensional regional displacement after surgical-orthodontic correction of Class III malocclusion. | Koerich, L; Ruellas, A C O; Paniagua, B; Styner, M; Turvey, T; Cevidanes, L H S | Orthodontics & craniofacial research. | 26521755 | 2016 May; |
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| Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. | Uzuner, Özlem; Stubbs, Amber | Journal of biomedical informatics. | 26515500 | 2015 Dec; |
| An Adaptive Difference Distribution-based Coding with Hierarchical Tree Structure for DNA Sequence Compression. | Dai, Wenrui; Xiong, Hongkai; Jiang, Xiaoqian; Ohno-Machado, Lucila | Proceedings. Data Compression Conference | 26501129 | 2013 |
| Splenium development and early spoken language in human infants. | Swanson, Meghan R; Wolff, Jason J; Elison, Jed T; Gu, Hongbin; Hazlett, Heather C; Botteron, Kelly; Styner, Martin; Paterson, Sarah; Gerig, Guido; Constantino, John; Dager, Stephen; Estes, Annette; Vachet, Clement; Piven, Joseph; IBIS Network | Developmental science. | 26490257 | 2017 Mar; |
| Implications of non-stationarity on predictive modeling using EHRs. | Jung, Kenneth; Shah, Nigam H | Journal of biomedical informatics. | 26483171 | 2015 Dec; |
| Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants. | Petryszak, Robert; Keays, Maria; Tang, Y Amy; Fonseca, Nuno A; Barrera, Elisabet; Burdett, Tony; Füllgrabe, Anja; Fuentes, Alfonso Muñoz-Pomer; Jupp, Simon; Koskinen, Satu; Mannion, Oliver; Huerta, Laura; Megy, Karine; Snow, Catherine; Williams, Eleanor; Barzine, Mitra; Hastings, Emma; Weisser, Hendrik; Wright, James; Jaiswal, Pankaj; Huber, Wolfgang; Choudhary, Jyoti; Parkinson, Helen E; Brazma, Alvis | Nucleic acids research. | 26481351 | 2016 Jan 4; |
| Distinct Viral and Mutational Spectrum of Endemic Burkitt Lymphoma. | Abate, Francesco; Ambrosio, Maria Raffaella; Mundo, Lucia; Laginestra, Maria Antonella; Fuligni, Fabio; Rossi, Maura; Zairis, Sakellarios; Gazaneo, Sara; De Falco, Giulia; Lazzi, Stefano; Bellan, Cristiana; Rocca, Bruno Jim; Amato, Teresa; Marasco, Elena; Etebari, Maryam; Ogwang, Martin; Calbi, Valeria; Ndede, Isaac; Patel, Kirtika; Chumba, David; Piccaluga, Pier Paolo; Pileri, Stefano; Leoncini, Lorenzo; Rabadan, Raul | PLoS pathogens | 26468873 | 2015 Oct |
| Creating a Common Data Model for Comparative Effectiveness with the Observational Medical Outcomes Partnership. | FitzHenry, F; Resnic, F S; Robbins, S L; Denton, J; Nookala, L; Meeker, D; Ohno-Machado, L; Matheny, M E | Applied clinical informatics. | 26448797 | 2015; |
| Feasibility of Prioritizing Drug-Drug-Event Associations Found in Electronic Health Records. | Banda, Juan M; Callahan, Alison; Winnenburg, Rainer; Strasberg, Howard R; Cami, Aurel; Reis, Ben Y; Vilar, Santiago; Hripcsak, George; Dumontier, Michel; Shah, Nigam Haresh | Drug safety | 26446143 | 2016 Jan |
| HEALER: homomorphic computation of ExAct Logistic rEgRession for secure rare disease variants analysis in GWAS. | Wang, Shuang; Zhang, Yuchen; Dai, Wenrui; Lauter, Kristin; Kim, Miran; Tang, Yuzhe; Xiong, Hongkai; Jiang, Xiaoqian | Bioinformatics (Oxford, England). | 26446135 | 2016 Jan 15; |
| Open Knee: Open Source Modeling and Simulation in Knee Biomechanics. | Erdemir, Ahmet | The journal of knee surgery | 26444849 | 2016 Feb |
| Structural Neuroimaging Genetics Interactions in Alzheimer's Disease. | Moon, Seok Woo; Dinov, Ivo D; Kim, Jaebum; Zamanyan, Alen; Hobel, Sam; Thompson, Paul M; Toga, Arthur W | Journal of Alzheimer's disease : JAD. | 26444770 | 2015; |
| Creation of a new longitudinal corpus of clinical narratives. | Kumar, Vishesh; Stubbs, Amber; Shaw, Stanley; Uzuner, Özlem | Journal of biomedical informatics. | 26433122 | 2015 Dec; |
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| The digital revolution in phenotyping. | Oellrich, Anika; Collier, Nigel; Groza, Tudor; Rebholz-Schuhmann, Dietrich; Shah, Nigam; Bodenreider, Olivier; Boland, Mary Regina; Georgiev, Ivo; Liu, Hongfang; Livingston, Kevin; Luna, Augustin; Mallon, Ann-Marie; Manda, Prashanti; Robinson, Peter N; Rustici, Gabriella; Simon, Michelle; Wang, Liqin; Winnenburg, Rainer; Dumontier, Michel | Briefings in bioinformatics. | 26420780 | 2016 09; |
| A gene expression resource generated by genome-wide lacZ profiling in the mouse. | Tuck, Elizabeth; Estabel, Jeanne; Oellrich, Anika; Maguire, Anna Karin; Adissu, Hibret A; Souter, Luke; Siragher, Emma; Lillistone, Charlotte; Green, Angela L; Wardle-Jones, Hannah; Carragher, Damian M; Karp, Natasha A; Smedley, Damian; Adams, Niels C; Sa | Disease models & mechanisms. | 26398943 | 2015 Nov; |
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| MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure. | Kim, Jihoon; Levy, Eric; Ferbrache, Alex; Stepanowsky, Petra; Farcas, Claudiu; Wang, Shuang; Brunner, Stefan; Bath, Tyler; Wu, Yuan; Ohno-Machado, Lucila | Bioinformatics (Oxford, England). | 24907367 | 2014 Oct; |
| Structural bioinformatics of the interactome. | Petrey, Donald; Honig, Barry | Annual review of biophysics | 24895853 | 2014 May 6 |
| Tracing Compartmentalized NADPH Metabolism in the Cytosol and Mitochondria of Mammalian Cells. | Lewis, Caroline A; Parker, Seth J; Fiske, Brian P; McCloskey, Douglas; Gui, Dan Y; Green, Courtney R; Vokes, Natalie I; Feist, Adam M; Vander Heiden, Matthew G; Metallo, Christian M | Molecular cell | 24882210 | 2014 May 28 |
| A community effort to assess and improve drug sensitivity prediction algorithms. | Costello, James C; Heiser, Laura M; Georgii, Elisabeth; Gonen, Mehmet; Menden, Michael P; Wang, Nicholas J; Bansal, Mukesh; Ammad-ud-din, Muhammad; Hintsanen, Petteri; Khan, Suleiman A; Mpindi, John-Patrick; Kallioniemi, Olli; Honkela, Antti; Aittokallio, | Nature biotechnology. | 24880487 | 2014 Dec; |
| Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein. | Gonzalez-Hernandez, Marta J; Cavalcoli, James D; Sartor, Maureen A; Contreras-Galindo, Rafael; Meng, Fan; Dai, Manhong; Dube, Derek; Saha, Anjan K; Gitlin, Scott D; Omenn, Gilbert S; Kaplan, Mark H; Markovitz, David M | Journal of virology. | 24872592 | 2014 Aug; |
| Natural language processing in biomedicine: a unified system architecture overview. | Doan, Son; Conway, Mike; Phuong, Tu Minh; Ohno-Machado, Lucila | Methods in molecular biology (Clifton, N.J.) | 24870142 | 2014 |
| Evaluating the effects of machine pre-annotation and an interactive annotation interface on manual de-identification of clinical text. | South, Brett R; Mowery, Danielle; Suo, Ying; Leng, Jianwei; Ferrandez, Oscar; Meystre, Stephane M; Chapman, Wendy W | Journal of biomedical informatics. | 24859155 | 2014 Aug; |
| Transfer learning based clinical concept extraction on data from multiple sources. | Lv, Xinbo; Guan, Yi; Deng, Benyang | Journal of biomedical informatics. | 24859154 | 2014 Dec; |
| Structural and connectomic neuroimaging for the personalized study of longitudinal alterations in cortical shape, thickness and connectivity after traumatic brain injury. | Irimia, A; Goh, S Y; Torgerson, C M; Vespa, P M; Van Horn, J D | Journal of neurosurgical sciences | 24844173 | 2014 May 20 |
| Meshless Modeling of Deformable Shapes and their Motion. | Adams, Bart; Ovsjanikov, Maks; Wand, Michael; Seidel, Hans-Peter; Guibas, Leonidas J | Computer animation / ACM SIGGRAPH/Eurographics Symposium on Computer Animation. ACM SIGGRAPH Symposium on Computer Animation. | 24839614 | 2008; |
| Categories and Functional Units: An Infinite Hierarchical Model for Brain Activations. | Lashkari, Danial; Sridharan, Ramesh; Golland, Polina | Advances in neural information processing systems. | 24839377 | 2010 Jan 1; |
| Patient-level temporal aggregation for text-based asthma status ascertainment. | Wu, Stephen T; Juhn, Young J; Sohn, Sunghwan; Liu, Hongfang | Journal of the American Medical Informatics Association : JAMIA. | 24833775 | 2014 Sep-Oct; |
| Efficient inverse isoparametric mapping algorithm for whole-body computed tomography registration using deformations predicted by nonlinear finite element modeling. | Li, Mao; Wittek, Adam; Miller, Karol | Journal of biomechanical engineering | 24828796 | 2014 Aug |
| Cross-species regulatory network analysis identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. | Aytes, Alvaro; Mitrofanova, Antonina; Lefebvre, Celine; Alvarez, Mariano J; Castillo-Martin, Mireia; Zheng, Tian; Eastham, James A; Gopalan, Anuradha; Pienta, Kenneth J; Shen, Michael M; Califano, Andrea; Abate-Shen, Cory | Cancer cell | 24823640 | 2014 May 12 |
| Response of Escherichia coli growth rate to osmotic shock. | Rojas, Enrique; Theriot, Julie A; Huang, Kerwyn Casey | Proceedings of the National Academy of Sciences of the United States of America | 24821776 | 2014 May 27 |
| Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture. | Mandl, Kenneth D; Kohane, Isaac S; McFadden, Douglas; Weber, Griffin M; Natter, Marc; Mandel, Joshua; Schneeweiss, Sebastian; Weiler, Sarah; Klann, Jeffrey G; Bickel, Jonathan; Adams, William G; Ge, Yaorong; Zhou, Xiaobo; Perkins, James; Marsolo, Keith; B | Journal of the American Medical Informatics Association : JAMIA | 24821734 | 2014 Jul |
| Stable Atlas-based Mapped Prior (STAMP) machine-learning segmentation for multicenter large-scale MRI data. | Kim, Eun Young; Magnotta, Vincent A; Liu, Dawei; Johnson, Hans J | Magnetic resonance imaging | 24818817 | 2014 May 9 |
| Functional Geometry Alignment and Localization of Brain Areas. | Langs, Georg; Golland, Polina; Tie, Yanmei; Rigolo, Laura; Golby, Alexandra J | Advances in neural information processing systems. | 24808719 | 2010; |
| A graph algebra for scalable visual analytics. | Shaverdian, Anna A; Zhou, Hao; Michailidis, George; Jagadish, Hosagrahar V | IEEE computer graphics and applications. | 24806630 | 2012 Jul-Aug; |
| Multiatlas segmentation as nonparametric regression. | Awate, Suyash P; Whitaker, Ross T | IEEE transactions on medical imaging. | 24802528 | 2014 Sep; |
| Coping with confounds in multivoxel pattern analysis: what should we do about reaction time differences? A comment on Todd, Nystrom & Cohen 2013. | Woolgar, Alexandra; Golland, Polina; Bode, Stefan | NeuroImage | 24793832 | 2014 Sep |
| Automatic segmentation of head and neck CT images for radiotherapy treatment planning using multiple atlases, statistical appearance models, and geodesic active contours. | Fritscher, Karl D; Peroni, Marta; Zaffino, Paolo; Spadea, Maria Francesca; Schubert, Rainer; Sharp, Gregory | Medical physics | 24784389 | 2014 May |
| Vision 20/20: perspectives on automated image segmentation for radiotherapy. | Sharp, Gregory; Fritscher, Karl D; Pekar, Vladimir; Peroni, Marta; Shusharina, Nadya; Veeraraghavan, Harini; Yang, Jinzhong | Medical physics | 24784366 | 2014 May |
| pSCANNER: patient-centered Scalable National Network for Effectiveness Research. | Ohno-Machado, Lucila; Agha, Zia; Bell, Douglas S; Dahm, Lisa; Day, Michele E; Doctor, Jason N; Gabriel, Davera; Kahlon, Maninder K; Kim, Katherine K; Hogarth, Michael; Matheny, Michael E; Meeker, Daniella; Nebeker, Jonathan R; pSCANNER team | Journal of the American Medical Informatics Association : JAMIA | 24780722 | 2014 Jul-Aug |
| Evaluating marker-guided treatment selection strategies. | Matsouaka, Roland A; Li, Junlong; Cai, Tianxi | Biometrics | 24779731 | 2014 Apr 29 |
| Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge. | Huang, Wei; Li, Xin; Chen, Yiyi; Li, Xia; Chang, Ming-Ching; Oborski, Matthew J; Malyarenko, Dariya I; Muzi, Mark; Jajamovich, Guido H; Fedorov, Andriy; Tudorica, Alina; Gupta, Sandeep N; Laymon, Charles M; Marro, Kenneth I; Dyvorne, Hadrien A; Miller, James V; Barbodiak, Daniel P; Chenevert, Thomas L; Yankeelov, Thomas E; Mountz, James M; Kinahan, Paul E; Kikinis, Ron; Taouli, Bachir; Fennessy, Fiona; Kalpathy-Cramer, Jayashree | Translational oncology. | 24772219 | 2014 Feb; |
| Errors in Quantitative Image Analysis due to Platform-Dependent Image Scaling. | Chenevert, Thomas L; Malyarenko, Dariya I; Newitt, David; Li, Xin; Jayatilake, Mohan; Tudorica, Alina; Fedorov, Andriy; Kikinis, Ron; Liu, Tiffany Ting; Muzi, Mark; Oborski, Matthew J; Laymon, Charles M; Li, Xia; Thomas, Yankeelov; Jayashree, Kalpathy-Cra | Translational oncology. | 24772209 | 2014 Feb; |
| Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development. | Bendall, Sean C; Davis, Kara L; Amir, El-Ad David; Tadmor, Michelle D; Simonds, Erin F; Chen, Tiffany J; Shenfeld, Daniel K; Nolan, Garry P; Pe'er, Dana | Cell | 24766814 | 2014 Apr 24 |
| Knowledge-based fragment binding prediction. | Tang, Grace W; Altman, Russ B | PLoS computational biology | 24762971 | 2014 Apr |
| Application of Tolerance Limits to the Characterization of Image Registration Performance. | Fedorov, Andriy; Wells, William; Kikinis, Ron; Tempany, Clare; Vangel, Mark | IEEE transactions on medical imaging | 24759985 | 2014 Apr 16 |
| Millisecond dynamics of RNA polymerase II translocation at atomic resolution. | Silva, Daniel-Adriano; Weiss, Dahlia R; Pardo Avila, Fatima; Da, Lin-Tai; Levitt, Michael; Wang, Dong; Huang, Xuhui | Proceedings of the National Academy of Sciences of the United States of America | 24753580 | 2014 May 27 |
| HD CAGnome: a search tool for huntingtin CAG repeat length-correlated genes. | Galkina, Ekaterina I; Shin, Aram; Coser, Kathryn R; Shioda, Toshi; Kohane, Isaac S; Seong, Ihn Sik; Wheeler, Vanessa C; Gusella, James F; Macdonald, Marcy E; Lee, Jong-Min | PloS one | 24751919 | 2014 |
| Signal Processing and Machine Learning with Differential Privacy: Algorithms and challenges for continuous data. | Sarwate, Anand D; Chaudhuri, Kamalika | IEEE signal processing magazine | 24737929 | 2013 Sep 1 |
| Molecular testing of 163 patients with Morquio A (Mucopolysaccharidosis IVA) identifies 39 novel GALNS mutations. | Morrone, A; Tylee, K L; Al-Sayed, M; Brusius-Facchin, A C; Caciotti, A; Church, H J; Coll, M J; Davidson, K; Fietz, M J; Gort, L; Hegde, M; Kubaski, F; Lacerda, L; Laranjeira, F; Leistner-Segal, S; Mooney, S; Pajares, S; Pollard, L; Ribeiro, I; Wang, R Y; | Molecular genetics and metabolism | 24726177 | 2014 Mar 20 |
| A complete system for automatic extraction of left ventricular myocardium from CT images using shape segmentation and contour evolution. | Liangjia Zhu; Yi Gao; Appia, Vikram; Yezzi, Anthony; Arepalli, Chesnal; Faber, Tracy; Stillman, Arthur; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 24723531 | 2014 Mar |
| Ensuring privacy in the study of pathogen genetics. | Mehta, Sanjay R; Vinterbo, Staal A; Little, Susan J | The Lancet infectious diseases | 24721230 | 2014 Apr 7 |
| Toward Enhanced Pharmacovigilance Using Patient-Generated Data on the Internet. | White, R W; Harpaz, R; Shah, N H; Dumouchel, W; Horvitz, E | Clinical pharmacology and therapeutics | 24713590 | 2014 Apr 8 |
| Mutual information as a measure of image quality for 3D dynamic lung imaging with EIT. | Crabb, M G; Davidson, J L; Little, R; Wright, P; Morgan, A R; Miller, C A; Naish, J H; Parker, G J M; Kikinis, R; McCann, H; Lionheart, W R B | Physiological measurement | 24710978 | 2014 May |
| Identifying regulatory mechanisms underlying tumorigenesis using locus expression signature analysis. | Lee, Eunjee; de Ridder, Jeroen; Kool, Jaap; Wessels, Lodewyk F A; Bussemaker, Harmen J | Proceedings of the National Academy of Sciences of the United States of America | 24706889 | 2014 Apr 15 |
| Response to letters regarding article, "unexpected effect of proton pump inhibitors: elevation of the cardiovascular risk factor asymmetric dimethylarginine". | Ghebremariam, Yohannes T; Lee, Jerry C; LePendu, Paea; Erlanson, Daniel A; Slaviero, Anna; Shah, Nigam H; Leiper, James M; Cooke, John P | Circulation | 24687654 | 2014 Apr 1 |
| Population-level evidence for an autoimmune etiology of epilepsy. | Ong, Mei-Sing; Kohane, Isaac S; Cai, Tianxi; Gorman, Mark P; Mandl, Kenneth D | JAMA neurology | 24687183 | 2014 May |
| Joint modeling of imaging and genetics. | Batmanghelich, Nematollah K; Dalca, Adrian V; Sabuncu, Mert R; Polina, Golland; ADNI | Information processing in medical imaging : proceedings of the ... conference | 24684016 | 2013 |
| Geodesic shape regression in the framework of currents. | Fishbaugh, James; Prastawa, Marcel; Gerig, Guido; Durrleman, Stanley | Information processing in medical imaging : proceedings of the ... conference | 24684012 | 2013 |
| Bayesian segmentation of atrium wall using globally-optimal graph cuts on 3D meshes. | Veni, Gopalkrishna; Fu, Zhisong; Awate, Suyash P; Whitaker, Ross T | Information processing in medical imaging : proceedings of the ... conference | 24684007 | 2013 |
| Group-wise cortical correspondence via sulcal curve-constrained entropy minimization. | Lyu, Ilwoo; Kim, Sun Hyung; Seong, Joon-Kyung; Yoo, Sang Wook; Evans, Alan C; Shi, Yundi; Sanchez, Mar; Niethammer, Marc; Styner, Martin A | Information processing in medical imaging : proceedings of the ... conference | 24683983 | 2013 |
| Sparse projections of medical images onto manifolds. | Chen, George H; Wachinger, Christian; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference | 24683977 | 2013 |
| A longitudinal functional analysis framework for analysis of white matter tract statistics. | Yuan, Ying; Gilmore, John H; Geng, Xiujuan; Styner, Martin A; Chen, Kehui; Wang, Jane-Ling; Zhu, Hongtu | Information processing in medical imaging : proceedings of the ... conference | 24683971 | 2013 |
| Detecting Inappropriate Access to Electronic Health Records Using Collaborative Filtering. | Menon, Aditya Krishna; Jiang, Xiaoqian; Kim, Jihoon; Vaidya, Jaideep; Ohno-Machado, Lucila | Machine learning | 24683293 | 2014 Apr 1 |
| Aldosterone dysregulation with aging predicts renal vascular function and cardiovascular risk. | Brown, Jenifer M; Underwood, Patricia C; Ferri, Claudio; Hopkins, Paul N; Williams, Gordon H; Adler, Gail K; Vaidya, Anand | Hypertension | 24664291 | 2014 Jun |
| Towards Effcient Label Fusion by Pre-Alignment of Training Data. | Depa, Michal; Holmvang, Godtfred; Schmidt, Ehud J; Golland, Polina; Sabuncu, Mert R | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 24660167 | 2011; |
| Landmark Estimation of Survival and Treatment Effect in a Randomized Clinical Trial. | Parast, Layla; Tian, Lu; Cai, Tianxi | Journal of the American Statistical Association | 24659838 | 2014 Jan 1 |
| Bayesian energy landscape tilting: towards concordant models of molecular ensembles. | Beauchamp, Kyle A; Pande, Vijay S; Das, Rhiju | Biophysical journal | 24655513 | 2014 Mar 18 |
| Empirical Bayes methods enable advanced population-level analyses of single-molecule FRET experiments. | van de Meent, Jan-Willem; Bronson, Jonathan E; Wiggins, Chris H; Gonzalez Jr, Ruben L | Biophysical journal | 24655508 | 2014 Mar 18 |
| Developing image processing meta-algorithms with data mining of multiple metrics. | Leung, Kelvin; Cunha, Alexandre; Toga, A W; Parker, D Stott | Computational and mathematical methods in medicine | 24653748 | 2014 |
| Cerebral white matter abnormalities and their associations with negative but not positive symptoms of schizophrenia. | Asami, Takeshi; Hyuk Lee, Sang; Bouix, Sylvain; Rathi, Yogesh; Whitford, Thomas J; Niznikiewicz, Margaret; Nestor, Paul; McCarley, Robert W; Shenton, Martha E; Kubicki, Marek | Psychiatry research | 24650453 | 2014 Apr 30 |
| Higher plasma vitamin D is associated with reduced risk of Clostridium difficile infection in patients with inflammatory bowel diseases. | Ananthakrishnan, A N; Cagan, A; Gainer, V S; Cheng, S-C; Cai, T; Szolovits, P; Shaw, S Y; Churchill, S; Karlson, E W; Murphy, S N; Kohane, I; Liao, K P | Alimentary pharmacology & therapeutics | 24641590 | 2014 May |
| Convection-enhanced delivery of etoposide is effective against murine proneural glioblastoma. | Sonabend, Adam M; Carminucci, Arthur S; Amendolara, Benjamin; Bansal, Mukesh; Leung, Richard; Lei, Liang; Realubit, Ronald; Li, Hai; Karan, Charles; Yun, Jonathan; Showers, Christopher; Rothcock, Robert; O, Jane; Califano, Andrea; Canoll, Peter; Bruce, Je | Neuro-oncology. | 24637229 | 2014 Sep; |
| High precision prediction of functional sites in protein structures. | Buturovic, Ljubomir; Wong, Mike; Tang, Grace W; Altman, Russ B; Petkovic, Dragutin | PloS one | 24632601 | 2014 |
| Thromboprophylaxis Is Associated With Reduced Post-hospitalization Venous Thromboembolic Events in Patients With Inflammatory Bowel Diseases. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Gainer, Vivian S; Cheng, Su-Chun; Cai, Tianxi; Scoville, Elizabeth; Konijeti, Gauree G; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine | Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association | 24632349 | 2014 Mar 12 |
| MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data. | Gan, Zhuohui; Wang, Jianwu; Salomonis, Nathan; Stowe, Jennifer C; Haddad, Gabriel G; McCulloch, Andrew D; Altintas, Ilkay; Zambon, Alexander C | BMC bioinformatics | 24621103 | 2014 |
| Neuroinformatics challenges to the structural, connectomic, functional and electrophysiological multimodal imaging of human traumatic brain injury. | Goh, S Y Matthew; Irimia, Andrei; Torgerson, Carinna M; Horn, John D Van | Frontiers in neuroinformatics. | 24616696 | 2014; |
| Changes in tibiofemoral forces due to variations in muscle activity during walking. | Demers, Matthew S; Pal, Saikat; Delp, Scott L | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 24615885 | 2014 Feb 26 |
| Pregnancy in women with a history of Kawasaki disease: management and outcomes. | Gordon, Ct; Jimenez-Fernandez, S; Daniels, Lb; Kahn, Am; Tarsa, M; Matsubara, T; Shimizu, C; Burns, Jc; Gordon, Jb | BJOG : an international journal of obstetrics and gynaecology | 24597833 | 2014 Mar 6 |
| Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies. | Walls, Ramona L; Deck, John; Guralnick, Robert; Baskauf, Steve; Beaman, Reed; Blum, Stanley; Bowers, Shawn; Buttigieg, Pier Luigi; Davies, Neil; Endresen, Dag; Gandolfo, Maria Alejandra; Hanner, Robert; Janning, Alyssa; Krishtalka, Leonard; Matsunaga, And | PloS one | 24595056 | 2014 |
| The automated function prediction SIG looks back at 2013 and prepares for 2014. | Wass, Mark N; Mooney, Sean D; Linial, Michal; Radivojac, Predrag; Friedberg, Iddo | Bioinformatics (Oxford, England) | 24590444 | 2014 Jul 15 |
| Automated detection of off-label drug use. | Jung, Kenneth; LePendu, Paea; Chen, William S; Iyer, Srinivasan V; Readhead, Ben; Dudley, Joel T; Shah, Nigam H | PloS one | 24586689 | 2014 |
| Interactive MRI Segmentation with Controlled Active Vision. | Karasev, Peter; Kolesov, Ivan; Chudy, Karol; Muller, Grant; Xerogeanes, John; Tannenbaum, Allen | Proceedings of the ... IEEE Conference on Decision & Control / IEEE Control Systems Society. IEEE Conference on Decision & Control | 24584213 | 2011 |
| Multifold Bayesian kernelization in Alzheimer's diagnosis. | Liu, Sidong; Song, Yang; Cai, Weidong; Pujol, Sonia; Kikinis, Ron; Wang, Xiaogang; Feng, Dagan | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 24579154 | 2013 |
| Geodesic distances to landmarks for dense correspondence on ensembles of complex shapes. | Datar, Manasi; Lyu, Ilwoo; Kim, SunHyung; Cates, Joshua; Styner, Martin A; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 24579119 | 2013 |
| Systematic network lesioning reveals the core white matter scaffold of the human brain. | Irimia, Andrei; Van Horn, John D | Frontiers in human neuroscience. | 24574993 | 2014; |
| Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline. | Wang, Jiahui; Vachet, Clement; Rumple, Ashley; Gouttard, Sylvain; Ouziel, Clementine; Perrot, Emilie; Du, Guangwei; Huang, Xuemei; Gerig, Guido; Styner, Martin | Frontiers in neuroinformatics | 24567717 | 2014 |
| SAVI: a statistical algorithm for variant frequency identification. | Trifonov, Vladimir; Pasqualucci, Laura; Tiacci, Enrico; Falini, Brunangelo; Rabadan, Raul | BMC systems biology | 24564980 | 2013 |
| On the mechanics of growing thin biological membranes. | Rausch, Manuel K; Kuhl, Ellen | Journal of the mechanics and physics of solids | 24563551 | 2014 Feb 1 |
| Mortality and extraintestinal cancers in patients with primary sclerosing cholangitis and inflammatory bowel disease. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Gainer, Vivian S; Cheng, Su-Chun; Cai, Tianxi; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine P | Journal of Crohn's & colitis | 24559536 | 2014 Feb 18 |
| Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes. | Udpa, Nitin; Ronen, Roy; Zhou, Dan; Liang, Junbin; Stobdan, Tsering; Appenzeller, Otto; Yin, Ye; Du, Yuanping; Guo, Lixia; Cao, Rui; Wang, Yu; Jin, Xin; Huang, Chen; Jia, Wenlong; Cao, Dandan; Guo, Guangwu; Claydon, Victoria E; Hainsworth, Roger; Gamboa, | Genome biology. | 24555826 | 2014; |
| When you can't tell when it hurts: a preliminary algorithm to assess pain in patients who can't communicate. | Wang, Shuang; Jiang, Xiaoqian; Ji, Zhanglong; El-Kareh, Robert; Choi, Jeeyae; Kim, Hyeoneui | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 24551418 | 2013 |
| Crowdsourcing the verification of relationships in biomedical ontologies. | Mortensen, Jonathan M; Musen, Mark A; Noy, Natalya F | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 24551391 | 2013 |
| Building and evaluating an ontology-based tool for reasoning about consent permission. | Grando, Adela; Schwab, Richard | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 24551354 | 2013 |
| Effects of polymerization and nucleotide identity on the conformational dynamics of the bacterial actin homolog MreB. | Colavin, Alexandre; Hsin, Jen; Huang, Kerwyn Casey | Proceedings of the National Academy of Sciences of the United States of America | 24550504 | 2014 Mar 4 |
| Genetic lesions associated with chronic lymphocytic leukemia chemo-refractoriness. | Messina, Monica; Del Giudice, Ilaria; Khiabanian, Hossein; Rossi, Davide; Chiaretti, Sabina; Rasi, Silvia; Spina, Valeria; Holmes, Antony B; Marinelli, Marilisa; Fabbri, Giulia; Piciocchi, Alfonso; Mauro, Francesca R; Guarini, Anna; Gaidano, Gianluca; Dal | Blood | 24550227 | 2014 Apr 10 |
| Annotating the structure and components of a nanoparticle formulation using computable string expressions. | Thomas, Dennis G; Chikkagoudar, Satish; Chappell, Alan R; Baker, Nathan A | Proceedings. IEEE International Conference on Bioinformatics and Biomedicine. | 24533226 | 2012 Dec 31; |
| VARYING COEFFICIENT MODEL FOR MODELING DIFFUSION TENSORS ALONG WHITE MATTER TRACTS. | Yuan, Ying; Zhu, Hongtu; Styner, Martin; Gilmore, John H; Marron, J S | The annals of applied statistics | 24533040 | 2013 Mar |
| Rare copy number variation in treatment-resistant major depressive disorder. | O'Dushlaine, Colm; Ripke, Stephan; Ruderfer, Douglas M; Hamilton, Steven P; Fava, Maurizio; Iosifescu, Dan V; Kohane, Isaac S; Churchill, Susanne E; Castro, Victor M; Clements, Caitlin C; Blumenthal, Sarah R; Murphy, Shawn N; Smoller, Jordan W; Perlis, Ro | Biological psychiatry. | 24529801 | 2014 Oct 1; |
| DTIPrep: quality control of diffusion-weighted images. | Oguz, Ipek; Farzinfar, Mahshid; Matsui, Joy; Budin, Francois; Liu, Zhexing; Gerig, Guido; Johnson, Hans J; Styner, Martin | Frontiers in neuroinformatics. | 24523693 | 2014; |
| hARACNe: improving the accuracy of regulatory model reverse engineering via higher-order data processing inequality tests. | Jang, In Sock; Margolin, Adam; Califano, Andrea | Interface focus. | 24511376 | 2013 Aug 06; |
| Semi-Automatic Parcellation of the Corpus Striatum. | Al-Hakim, Ramsey; Nain, Delphine; Levitt, James; Shenton, Martha; Tannenbaum, Allen | Proceedings of SPIE | 24511366 | 2007 Mar 5 |
| Validation of catheter segmentation for MR-guided gynecologic cancer brachytherapy. | Pernelle, Guillaume; Mehrtash, Alireza; Barber, Lauren; Damato, Antonio; Wang, Wei; Seethamraju, Ravi Teja; Schmidt, Ehud; Cormack, Robert A; Wells, Williams; Viswanathan, Akila; Kapur, Tina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 24505784 | 2013 |
| Contour-driven regression for label inference in atlas-based segmentation. | Wachinger, Christian; Sharp, Gregory C; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 24505763 | 2013 |
| Particle-guided image registration. | Lee, Joohwi; Lyu, Ilwoo; Oguz, Ipek; Styner, Martin A | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 24505762 | 2013 |
| Detecting epileptic regions based on global brain connectivity patterns. | Sweet, Andrew; Venkataraman, Archana; Stufflebeam, Steven M; Liu, Hesheng; Tanaka, Naoro; Madsen, Joseph; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 24505654 | 2013 |
| Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia. | Rossi, Davide; Khiabanian, Hossein; Spina, Valeria; Ciardullo, Carmela; Bruscaggin, Alessio; Fama, Rosella; Rasi, Silvia; Monti, Sara; Deambrogi, Clara; De Paoli, Lorenzo; Wang, Jiguang; Gattei, Valter; Guarini, Anna; Foa, Robin; Rabadan, Raul; Gaidano, G | Blood | 24501221 | 2014 Apr 3 |
| Specificity of regulatory T cells that modulate vascular inflammation. | Franco, Alessandra; Touma, Ranim; Song, Yali; Shimizu, Chisato; Tremoulet, Adriana H; Kanegaye, John T; Burns, Jane C | Autoimmunity | 24490882 | 2014 Mar |
| Diagnostic Criteria for Temporomandibular Disorders (DC/TMD) for Clinical and Research Applications: recommendations of the International RDC/TMD Consortium Network* and Orofacial Pain Special Interest Group?. | Schiffman, Eric; Ohrbach, Richard; Truelove, Edmond; Look, John; Anderson, Gary; Goulet, Jean-Paul; List, Thomas; Svensson, Peter; Gonzalez, Yoly; Lobbezoo, Frank; Michelotti, Ambra; Brooks, Sharon L; Ceusters, Werner; Drangsholt, Mark; Ettlin, Dominik; Gaul, Charly; Goldberg, Louis J; Haythornthwaite, Jennifer A; Hollender, Lars; Jensen, Rigmor; John, Mike T; De Laat, Antoon; de Leeuw, Reny; Maixner, William; van der Meulen, Marylee; Murray, Greg M; Nixdorf, Donald R; Palla, Sandro; Petersson, Arne; Pionchon, Paul; Smith, Barry; Visscher, Corine M; Zakrzewska, Joanna; Dworkin, Samuel F; International RDC/TMD Consortium Network, International association for Dental Research; Orofacial Pain Special Interest Group, International Association for the Study of Pain | Journal of oral & facial pain and headache. | 24482784 | 2014; |
| Differential privacy based on importance weighting. | Ji, Zhanglong; Elkan, Charles | Machine learning | 24482559 | 2013 Oct |
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| A Patient-Specific Segmentation Framework for Longitudinal MR Images of Traumatic Brain Injury. | Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Chambers, Micah C; Vespa, Paul M; Van Horn, John D; Gerig, Guido | Proceedings - Society of Photo-Optical Instrumentation Engineers | 24465115 | 2012 Mar 23 |
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| More accurate neuronavigation data provided by biomechanical modeling instead of rigid registration. | Garlapati, Revanth Reddy; Roy, Aditi; Joldes, Grand Roman; Wittek, Adam; Mostayed, Ahmed; Doyle, Barry; Warfield, Simon Keith; Kikinis, Ron; Knuckey, Neville; Bunt, Stuart; Miller, Karol | Journal of neurosurgery | 24460486 | 2014 Jun |
| MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing. | Mort, Matthew; Sterne-Weiler, Timothy; Li, Biao; Ball, Edward V; Cooper, David N; Radivojac, Predrag; Sanford, Jeremy R; Mooney, Sean D | Genome biology | 24451234 | 2014 Jan 13 |
| MODELING LONGITUDINAL MRI CHANGES IN POPULATIONS USING A LOCALIZED, INFORMATION-THEORETIC MEASURE OF CONTRAST. | Vardhan, Avantika; Prastawa, Marcel; Sharma, Anuja; Piven, Joseph; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 24443698 | 2013 Dec 31 |
| ANALYZING IMAGING BIOMARKERS FOR TRAUMATIC BRAIN INJURY USING 4D MODELING OF LONGITUDINAL MRI. | Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Chambers, Micah C; Sadeghi, Neda; Vespa, Paul M; van Horn, John D; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 24443697 | 2013 Dec 31 |
| PROPER ORDERED MESHING OF COMPLEX SHAPES AND OPTIMAL GRAPH CUTS APPLIED TO ATRIAL-WALL SEGMENTATION FROM DE-MRI. | Veni, Gopalkrishna; Fu, Zhisong; Awate, Suyash P; Whitaker, Ross T | Proceedings. IEEE International Symposium on Biomedical Imaging. | 24443695 | 2013 Dec 31; |
| SPATIOTEMPORAL MODELING OF DISCRETE-TIME DISTRIBUTION-VALUED DATA APPLIED TO DTI TRACT EVOLUTION IN INFANT NEURODEVELOPMENT. | Sharma, Anuja; Fletcher, P Thomas; Gilmore, John H; Escolar, Maria L; Gupta, Aditya; Styner, Martin; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 24443688 | 2013 Dec 31 |
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| ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state. | Chudnovsky, Yakov; Kim, Dohoon; Zheng, Siyuan; Whyte, Warren A; Bansal, Mukesh; Bray, Mark-Anthony; Gopal, Shuba; Theisen, Matthew A; Bilodeau, Steve; Thiru, Prathapan; Muffat, Julien; Yilmaz, Omer H; Mitalipova, Maya; Woolard, Kevin; Lee, Jeongwu; Nishim | Cell reports | 24440720 | 2014 Jan 30 |
| Resampling Procedures for Making Inference under Nested Case-control Studies. | Cai, Tianxi; Zheng, Yingye | Journal of the American Statistical Association | 24436503 | 2013 Jan 1 |
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| Regional neuroplastic brain changes in patients with chronic inflammatory and non-inflammatory visceral pain. | Hong, Jui-Yang; Labus, Jennifer S; Jiang, Zhiguo; Ashe-Mcnalley, Cody; Dinov, Ivo; Gupta, Arpana; Shi, Yonggang; Stains, Jean; Heendeniya, Nuwanthi; Smith, Suzanne R; Tillisch, Kirsten; Mayer, Emeran A | PloS one | 24416245 | 2014 |
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| UNC-Utah NA-MIC DTI framework: Atlas Based Fiber Tract Analysis with Application to a Study of Nicotine Smoking Addiction. | Verde, Audrey R; Berger, Jean-Baptiste; Gupta, Aditya; Farzinfar, Mahshid; Kaiser, Adrien; Chanon, Vicki W; Boettiger, Charlotte; Goodlett, Casey; Shi, Yundi; Zhu, Hongtu; Gerig, Guido; Gouttard, Sylvain; Vachet, Clement; Styner, Martin | Proceedings of SPIE | 24386543 | 2013 Mar 13 |
| Studying PubMed usages in the field for complex problem solving: Implications for tool design. | Mirel, Barbara; Song, Jean; Tonks, Jennifer Steiner; Meng, Fan; Xuan, Weijian; Ameziane, Rafiqa | Journal of the American Society for Information Science and Technology : JASIST | 24376375 | 2013 May 1 |
| iPSC-derived neurons as a higher-throughput readout for autism: promises and pitfalls. | Prilutsky, Daria; Palmer, Nathan P; Smedemark-Margulies, Niklas; Schlaeger, Thorsten M; Margulies, David M; Kohane, Isaac S | Trends in molecular medicine | 24374161 | 2014 Feb |
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| HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads. | Li, Pinghao; Jiang, Xiaoqian; Wang, Shuang; Kim, Jihoon; Xiong, Hongkai; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 24368726 | 2014 Mar-Apr |
| Atrial fibrillation ablation outcome is predicted by left atrial remodeling on MRI. | McGann, Christopher; Akoum, Nazem; Patel, Amit; Kholmovski, Eugene; Revelo, Patricia; Damal, Kavitha; Wilson, Brent; Cates, Josh; Harrison, Alexis; Ranjan, Ravi; Burgon, Nathan S; Greene, Tom; Kim, Dan; Dibella, Edward V R; Parker, Dennis; Macleod, Rob S; | Circulation. Arrhythmia and electrophysiology | 24363354 | 2014 Feb |
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| Software-based Diffusion MR Human Brain Phantom for Evaluating Fiber-tracking Algorithms. | Shi, Yundi; Roger, Gwendoline; Vachet, Clement; Budin, Francois; Maltbie, Eric; Verde, Audrey; Hoogstoel, Marion; Berger, Jean-Baptiste; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 24357914 | 2013 Mar 13 |
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| Changes of MR and DTI appearance in early human brain development. | Marc, Cassian; Vachet, Clement; Gerig, Guido; Blocher, Joseph; Gilmore, John; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 24353378 | 2010 Mar 12 |
| Evaluation of DTI Property Maps as Basis of DTI Atlas Building. | Liu, Zhexing; Goodlett, Casey; Gerig, Guido; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 24353377 | 2010 Mar 12 |
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| Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways. | Kohlhoff, Kai J; Shukla, Diwakar; Lawrenz, Morgan; Bowman, Gregory R; Konerding, David E; Belov, Dan; Altman, Russ B; Pande, Vijay S | Nature chemistry | 24345941 | 2014 Jan |
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| Treatment response in kawasaki disease is associated with sialylation levels of endogenous but not therapeutic intravenous immunoglobulin G. | Ogata, Shohei; Shimizu, Chisato; Franco, Alessandra; Touma, Ranim; Kanegaye, John T; Choudhury, Biswa P; Naidu, Natasha N; Kanda, Yutaka; Hoang, Long T; Hibberd, Martin L; Tremoulet, Adriana H; Varki, Ajit; Burns, Jane C | PloS one | 24324693 | 2013 |
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| State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project. | Farrah, Terry; Deutsch, Eric W; Omenn, Gilbert S; Sun, Zhi; Watts, Julian D; Yamamoto, Tadashi; Shteynberg, David; Harris, Micheleen M; Moritz, Robert L | Journal of proteome research | 24261998 | 2014 Jan 3 |
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| SWEETLEAD: an in silico database of approved drugs, regulated chemicals, and herbal isolates for computer-aided drug discovery. | Novick, Paul A; Ortiz, Oscar F; Poelman, Jared; Abdulhay, Amir Y; Pande, Vijay S | PloS one | 24223973 | 2013 |
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| Neuroimaging of structural pathology and connectomics in traumatic brain injury: Toward personalized outcome prediction. | Irimia, Andrei; Wang, Bo; Aylward, Stephen R; Prastawa, Marcel W; Pace, Danielle F; Gerig, Guido; Hovda, David A; Kikinis, Ron; Vespa, Paul M; Van Horn, John D | NeuroImage. Clinical. | 24179732 | 2012; |
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| Distinct splice variants and pathway enrichment in the cell-line models of aggressive human breast cancer subtypes. | Menon, Rajasree; Im, Hogune; Zhang, Emma Yue; Wu, Shiaw-Lin; Chen, Rui; Snyder, Michael; Hancock, William S; Omenn, Gilbert S | Journal of proteome research | 24111759 | 2014 Jan 3 |
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| Discovering body site and severity modifiers in clinical texts. | Dligach, Dmitriy; Bethard, Steven; Becker, Lee; Miller, Timothy; Savova, Guergana K | Journal of the American Medical Informatics Association : JAMIA | 24091648 | 2014 May-Jun |
| Improved de-identification of physician notes through integrative modeling of both public and private medical text. | McMurry, Andrew J; Fitch, Britt; Savova, Guergana; Kohane, Isaac S; Reis, Ben Y | BMC medical informatics and decision making | 24083569 | 2013 |
| Temporal relation discovery between events and temporal expressions identified in clinical narrative. | Cheng, Yao; Anick, Peter; Hong, Pengyu; Xue, Nianwen | Journal of biomedical informatics | 24076508 | 2013 Dec |
| FMEM: functional mixed effects modeling for the analysis of longitudinal white matter Tract data. | Yuan, Ying; Gilmore, John H; Geng, Xiujuan; Martin, Styner; Chen, Kehui; Wang, Jane-ling; Zhu, Hongtu | NeuroImage | 24076225 | 2014 Jan 1 |
| A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk. | Blair, David R; Lyttle, Christopher S; Mortensen, Jonathan M; Bearden, Charles F; Jensen, Anders Boeck; Khiabanian, Hossein; Melamed, Rachel; Rabadan, Raul; Bernstam, Elmer V; Brunak, Soren; Jensen, Lars Juhl; Nicolae, Dan; Shah, Nigam H; Grossman, Robert | Cell | 24074861 | 2013 Sep 26 |
| Neural encoding of acupuncture needling sensations: evidence from a FMRI study. | Wang, Xiaoling; Chan, Suk-Tak; Fang, Jiliang; Nixon, Erika E; Liu, Jing; Kwong, Kenneth K; Rosen, Bruce R; Hui, Kathleen K S | Evidence-based complementary and alternative medicine : eCAM. | 24062782 | 2013; |
| TEMPTING system: a hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries. | Chang, Yung-Chun; Dai, Hong-Jie; Wu, Johnny Chi-Yang; Chen, Jian-Ming; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | Journal of biomedical informatics | 24060600 | 2013 Dec |
| Seasonality of Kawasaki disease: a global perspective. | Burns, Jane C; Herzog, Lauren; Fabri, Olivia; Tremoulet, Adriana H; Rodo, Xavier; Uehara, Ritei; Burgner, David; Bainto, Emelia; Pierce, David; Tyree, Mary; Cayan, Daniel; Kawasaki Disease Global Climate Consortium | PloS one | 24058585 | 2013 |
| Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. | Tustison, Nicholas J; Johnson, Hans J; Rohlfing, Torsten; Klein, Arno; Ghosh, Satrajit S; Ibanez, Luis; Avants, Brian B | Frontiers in neuroscience. | 24058331 | 2013; |
| Particle Filters and Occlusion Handling for Rigid 2D-3D Pose Tracking. | Lee, Jehoon; Sandhu, Romeil; Tannenbaum, Allen | Computer vision and image understanding : CVIU | 24058277 | 2013 Aug 1 |
| EFFECTIVELY SELECTING A TARGET POPULATION FOR A FUTURE COMPARATIVE STUDY. | Zhao, Lihui; Tian, Lu; Cai, Tianxi; Claggett, Brian; Wei, L J | Journal of the American Statistical Association | 24058223 | 2013 Jan 1 |
| Automatic segmentation of the left atrium from MR images via variational region growing with a moments-based shape prior. | Zhu, Liangjia; Gao, Yi; Yezzi, Anthony; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 24058026 | 2013 Dec |
| Combining an expert-based medical entity recognizer to a machine-learning system: methods and a case study. | Zweigenbaum, Pierre; Lavergne, Thomas; Grabar, Natalia; Hamon, Thierry; Rosset, Sophie; Grouin, Cyril | Biomedical informatics insights. | 24052691 | 2013; |
| Opportunities for genomic clinical decision support interventions. | Overby, Casey Lynnette; Kohane, Isaac; Kannry, Joseph L; Williams, Marc S; Starren, Justin; Bottinger, Erwin; Gottesman, Omri; Denny, Joshua C; Weng, Chunhua; Tarczy-Hornoch, Peter; Hripcsak, George | Genetics in medicine : official journal of the American College of Medical Genetics | 24051479 | 2013 Oct |
| A novel strategy to identify the critical conditions for growth-induced instabilities. | Javili, A; Steinmann, P; Kuhl, E | Journal of the mechanical behavior of biomedical materials | 24041754 | 2014 Jan |
| Temporomandibular joint condylar changes following maxillomandibular advancement and articular disc repositioning. | Goncalves, Joao Roberto; Wolford, Larry Miller; Cassano, Daniel Serra; da Porciuncula, Guilherme; Paniagua, Beatriz; Cevidanes, Lucia Helena | Journal of oral and maxillofacial surgery : official journal of the American Association of Oral and Maxillofacial Surgeons. | 24040949 | 2013 Oct; |
| Sex-related differences of cortical thickness in patients with chronic abdominal pain. | Jiang, Zhiguo; Dinov, Ivo D; Labus, Jennifer; Shi, Yonggang; Zamanyan, Alen; Gupta, Arpana; Ashe-McNalley, Cody; Hong, Jui-Yang; Tillisch, Kirsten; Toga, Arthur W; Mayer, Emeran A | PloS one | 24040118 | 2013 |
| On the design of clone-based haplotyping. | Lo, Christine; Liu, Rui; Lee, Jehyuk; Robasky, Kimberly; Byrne, Susan; Lucchesi, Carolina; Aach, John; Church, George; Bafna, Vineet; Zhang, Kun | Genome biology. | 24028704 | 2013; |
| Combined SPHARM-PDM and entropy-based particle systems shape analysis framework. | Paniagua, Beatriz; Bompard, Lucile; Cates, Josh; Whitaker, Ross; Datar, Manasi; Vachet, Clement; Styner, Martin | Proceedings of SPIE--the International Society for Optical Engineering. | 24027625 | 2012 Mar 23; |
| A molecular signature predictive of indolent prostate cancer. | Irshad, Shazia; Bansal, Mukesh; Castillo-Martin, Mireia; Zheng, Tian; Aytes, Alvaro; Wenske, Sven; Le Magnen, Clementine; Guarnieri, Paolo; Sumazin, Pavel; Benson, Mitchell C; Shen, Michael M; Califano, Andrea; Abate-Shen, Cory | Science translational medicine | 24027026 | 2013 Sep 11 |
| Extraction of events and temporal expressions from clinical narratives. | Jindal, Prateek; Roth, Dan | Journal of biomedical informatics | 24022023 | 2013 Dec |
| Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes. | Simon, Marissa; Bruex, Angela; Kainkaryam, Raghunandan M; Zheng, Xiaohua; Huang, Ling; Woolf, Peter J; Schiefelbein, John | The Plant cell | 24014549 | 2013 Sep |
| Assessment of biomarkers for risk prediction with nested case-control studies. | Zhou, Qian M; Zheng, Yingye; Cai, Tianxi | Clinical trials (London, England) | 24013405 | 2013 Oct |
| Electroencephalographic inverse localization of brain activity in acute traumatic brain injury as a guide to surgery, monitoring and treatment. | Irimia, Andrei; Goh, S-Y Matthew; Torgerson, Carinna M; Stein, Nathan R; Chambers, Micah C; Vespa, Paul M; Van Horn, John D | Clinical neurology and neurosurgery | 24011495 | 2013 Oct |
| Faceted Visualization of Three Dimensional Neuroanatomy By Combining Ontology with Faceted Search. | Veeraraghavan, Harini; Miller, James V | Neuroinformatics | 24006207 | 2013 Sep 5 |
| A new tool for sharing and querying of clinical documents modeled using HL7 Version 3 standard. | Slavov, Vasil; Rao, Praveen; Paturi, Srivenu; Swami, Tivakar Komara; Barnes, Michael; Rao, Deepthi; Palvai, Raghuvarun | Computer methods and programs in biomedicine | 24001923 | 2013 Dec |
| Stopping Criteria for Log-Domain Diffeomorphic Demons Registration: An Experimental Survey for Radiotherapy Application. | Peroni, M; Golland, P; Sharp, G C; Baroni, G | Technology in cancer research & treatment. | 24000996 | 2016 Feb; |
| Prostate cancer detection and diagnosis: the role of MR and its comparison with other diagnostic modalities--a radiologist's perspective. | Penzkofer, Tobias; Tempany-Afdhal, Clare M | NMR in biomedicine | 24000133 | 2014 Jan |
| SEGMENTATION OF SERIAL MRI OF TBI PATIENTS USING PERSONALIZED ATLAS CONSTRUCTION AND TOPOLOGICAL CHANGE ESTIMATION. | Wang, Bo; Prastawa, Marcel; Awate, Suyash P; Irimia, Andrei; Chambers, Micah C; Vespa, Paul M; van Horn, John D; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 23999192 | 2012 |
| STATISTICAL GROWTH MODELING OF LONGITUDINAL DT-MRI FOR REGIONAL CHARACTERIZATION OF EARLY BRAIN DEVELOPMENT. | Sadeghi, Neda; Prastawa, Marcel; Fletcher, P Thomas; Gilmore, John H; Lin, Weili; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 23999084 | 2012 |
| Automated skin segmentation in ultrasonic evaluation of skin toxicity in breast cancer radiotherapy. | Gao, Yi; Tannenbaum, Allen; Chen, Hao; Torres, Mylin; Yoshida, Emi; Yang, Xiaofeng; Wang, Yuefeng; Curran, Walter; Liu, Tian | Ultrasound in medicine & biology. | 23993172 | 2013 Nov; |
| Using twitter to examine smoking behavior and perceptions of emerging tobacco products. | Myslin, Mark; Zhu, Shu-Hong; Chapman, Wendy; Conway, Mike | Journal of medical Internet research | 23989137 | 2013 |
| PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. | Doan, Son; Lin, Ko-Wei; Conway, Mike; Ohno-Machado, Lucila; Hsieh, Alex; Feupe, Stephanie Feudjio; Garland, Asher; Ross, Mindy K; Jiang, Xiaoqian; Farzaneh, Seena; Walker, Rebecca; Alipanah, Neda; Zhang, Jing; Xu, Hua; Kim, Hyeon-Eui | Journal of the American Medical Informatics Association : JAMIA | 23989082 | 2014 Jan-Feb |
| Virmid: accurate detection of somatic mutations with sample impurity inference. | Kim, Sangwoo; Jeong, Kyowon; Bhutani, Kunal; Lee, Jeong; Patel, Anand; Scott, Eric; Nam, Hojung; Lee, Hayan; Gleeson, Joseph G; Bafna, Vineet | Genome biology. | 23987214 | 2013; |
| Identification of Functional Regulatory Residues of the ? -Lactam Inducible Penicillin Binding Protein in Methicillin-Resistant Staphylococcus aureus. | Mbah, Andreas N; Isokpehi, Raphael D | Chemotherapy research and practice. | 23984067 | 2013; |
| Automatic prediction of rheumatoid arthritis disease activity from the electronic medical records. | Lin, Chen; Karlson, Elizabeth W; Canhao, Helena; Miller, Timothy A; Dligach, Dmitriy; Chen, Pei Jun; Perez, Raul Natanael Guzman; Shen, Yuanyan; Weinblatt, Michael E; Shadick, Nancy A; Plenge, Robert M; Savova, Guergana K | PloS one | 23976944 | 2013 |
| On the effect of prestrain and residual stress in thin biological membranes. | Rausch, Manuel K; Kuhl, Ellen | Journal of the mechanics and physics of solids | 23976792 | 2013 Sep 1 |
| Multimodal deformable registration of traumatic brain injury MR volumes via the Bhattacharyya distance. | Lou, Yifei; Irimia, Andrei; Vela, Patricio A; Chambers, Micah C; Van Horn, John D; Vespa, Paul M; Tannenbaum, Allen R | IEEE transactions on bio-medical engineering | 23962986 | 2013 Sep |
| MULTIVARIATE MODELING OF LONGITUDINAL MRI IN EARLY BRAIN DEVELOPMENT WITH CONFIDENCE MEASURES. | Sadeghi, Neda; Prastawa, Marcel; Fletcher, P Thomas; Vachet, Clement; Wang, Bo; Gilmore, John; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 23959506 | 2013 |
| A NEW FRAMEWORK FOR ANALYZING WHITE MATTER MATURATION IN EARLY BRAIN DEVELOPMENT. | Prastawa, Marcel; Sadeghi, Neda; Gilmore, John H; Lin, Weili; Gerig, Guido | Proceedings. IEEE International Symposium on Biomedical Imaging. | 23959442 | 2010; |
| Toward a comprehensive framework for the spatiotemporal statistical analysis of longitudinal shape data. | Durrleman, S; Pennec, X; Trouve, A; Braga, J; Gerig, G; Ayache, N | International journal of computer vision. | 23956495 | 2013 May; |
| Identifying phenotypic signatures of neuropsychiatric disorders from electronic medical records. | Lyalina, Svetlana; Percha, Bethany; LePendu, Paea; Iyer, Srinivasan V; Altman, Russ B; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 23956017 | 2013 Dec |
| Classifying temporal relations in clinical data: A hybrid, knowledge-rich approach. | D'Souza, Jennifer; Ng, Vincent | Journal of biomedical informatics | 23954311 | 2013 Aug 14 |
| Whole-genome sequencing uncovers the genetic basis of chronic mountain sickness in Andean highlanders. | Zhou, Dan; Udpa, Nitin; Ronen, Roy; Stobdan, Tsering; Liang, Junbin; Appenzeller, Otto; Zhao, Huiwen W; Yin, Yi; Du, Yuanping; Guo, Lixia; Cao, Rui; Wang, Yu; Jin, Xin; Huang, Chen; Jia, Wenlong; Cao, Dandan; Guo, Guangwu; Gamboa, Jorge L; Villafuerte, Fr | American journal of human genetics | 23954164 | 2013 Sep 5 |
| Mapping cortical atrophy in Parkinson's disease patients with dementia. | Hwang, Kristy S; Beyer, Mona K; Green, Amity E; Chung, Christine; Thompson, Paul M; Janvin, Carmen; Larsen, Jan P; Aarsland, Dag; Apostolova, Liana G | Journal of Parkinson's disease | 23938313 | 2013 |
| Lipid and lipoprotein levels and trend in rheumatoid arthritis compared to the general population. | Liao, Katherine P; Cai, Tianxi; Gainer, Vivian S; Cagan, Andrew; Murphy, Shawn N; Liu, Chihchin; Churchill, Susanne; Shaw, Stanley Y; Kohane, Isaac; Solomon, Daniel H; Plenge, Robert M; Karlson, Elizabeth W | Arthritis care & research | 23925980 | 2013 Dec |
| Extending the NegEx lexicon for multiple languages. | Chapman, Wendy W; Hillert, Dieter; Velupillai, Sumithra; Kvist, Maria; Skeppstedt, Maria; Chapman, Brian E; Conway, Mike; Tharp, Melissa; Mowery, Danielle L; Deleger, Louise | Studies in health technology and informatics | 23920642 | 2013 |
| ETV4 promotes metastasis in response to activation of PI3-kinase and Ras signaling in a mouse model of advanced prostate cancer. | Aytes, Alvaro; Mitrofanova, Antonina; Kinkade, Carolyn Waugh; Lefebvre, Celine; Lei, Ming; Phelan, Vanessa; LeKaye, H Carl; Koutcher, Jason A; Cardiff, Robert D; Califano, Andrea; Shen, Michael M; Abate-Shen, Cory | Proceedings of the National Academy of Sciences of the United States of America | 23918374 | 2013 Sep 10 |
| The integrated landscape of driver genomic alterations in glioblastoma. | Frattini, Veronique; Trifonov, Vladimir; Chan, Joseph Minhow; Castano, Angelica; Lia, Marie; Abate, Francesco; Keir, Stephen T; Ji, Alan X; Zoppoli, Pietro; Niola, Francesco; Danussi, Carla; Dolgalev, Igor; Porrati, Paola; Pellegatta, Serena; Heguy, Adria | Nature genetics | 23917401 | 2013 Aug 5 |
| Shape abnormalities of the caudate nucleus correlate with poorer gait and balance: results from a subset of the LADIS study. | Macfarlane, Matthew D; Looi, Jeffrey C L; Walterfang, Mark; Spulber, Gabriela; Velakoulis, Dennis; Styner, Martin; Crisby, Milita; Orndahl, Eva; Erkinjuntti, Timo; Waldemar, Gunhild; Garde, Ellen; Hennerici, Michael G; Bazner, Hansjorg; Blahak, Christian; | The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry. | 23916546 | 2015 Jan; |
| Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice. | Parnell, Scott E; Holloway, Hunter T; O'Leary-Moore, Shonagh K; Dehart, Deborah B; Paniaqua, Beatriz; Oguz, Ipek; Budin, Francois; Styner, Martin A; Johnson, G Allan; Sulik, Kathleen K | Neurotoxicology and teratology | 23911654 | 2013 Sep-Oct |
| MedTime: a temporal information extraction system for clinical narratives. | Lin, Yu-Kai; Chen, Hsinchun; Brown, Randall A | Journal of biomedical informatics | 23911344 | 2013 Dec |
| PQM-1 Complements DAF-16 as a Key Transcriptional Regulator of DAF-2-Mediated Development and Longevity. | Tepper, Ronald G; Ashraf, Jasmine; Kaletsky, Rachel; Kleemann, Gunnar; Murphy, Coleen T; Bussemaker, Harmen J | Cell | 23911329 | 2013 Aug 1 |
| Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences. | Fan, Jung-wei; Yang, Elly W; Jiang, Min; Prasad, Rashmi; Loomis, Richard M; Zisook, Daniel S; Denny, Josh C; Xu, Hua; Huang, Yang | Journal of the American Medical Informatics Association : JAMIA | 23907286 | 2013 Nov-Dec |
| Immune-monitoring in Kawasaki disease patients treated with infliximab and intravenous immunoglobulin. | Burns, J C; Song, Y; Bujold, M; Shimizu, C; Kanegaye, J T; Tremoulet, A H; Franco, A | Clinical and experimental immunology | 23901839 | 2013 Dec |
| A locally adaptive regularization based on anisotropic diffusion for deformable image registration of sliding organs. | Pace, Danielle F; Aylward, Stephen R; Niethammer, Marc | IEEE transactions on medical imaging | 23899632 | 2013 Nov |
| Interactive medical image segmentation using PDE control of active contours. | Karasev, Peter; Kolesov, Ivan; Fritscher, Karl; Vela, Patricio; Mitchell, Phillip; Tannenbaum, Allen | IEEE transactions on medical imaging | 23893712 | 2013 Nov |
| Localizing the human primary auditory cortex in vivo using structural MRI. | Wasserthal, Christian; Brechmann, Andre; Stadler, Jorg; Fischl, Bruce; Engel, Karin | NeuroImage | 23891882 | 2013 Jul 25 |
| CLASSIFYING PROCESSES: AN ESSAY IN APPLIED ONTOLOGY. | Smith, Barry | Ratio | 23888086 | 2012 Dec 1 |
| Fast local trust region technique for diffusion tensor registration using exact reorientation and regularization. | Li, Junning; Shi, Yonggang; Tran, Giang; Dinov, Ivo; Wang, Danny J J; Toga, Arthur | IEEE transactions on medical imaging. | 23880040 | 2014 May; |
| Annotating temporal information in clinical narratives. | Sun, Weiyi; Rumshisky, Anna; Uzuner, Ozlem | Journal of biomedical informatics | 23872518 | 2013 Jul 19 |
| Semantator: Semantic annotator for converting biomedical text to linked data. | Tao, Cui; Song, Dezhao; Sharma, Deepak; Chute, Christopher G | Journal of biomedical informatics | 23867104 | 2013 Oct |
| From connectivity models to region labels: identifying foci of a neurological disorder. | Venkataraman, Archana; Kubicki, Marek; Golland, Polina | IEEE transactions on medical imaging | 23864168 | 2013 Nov |
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| Longitudinal image registration with temporally-dependent image similarity measure. | Csapo, Istvan; Davis, Brad; Shi, Yundi; Sanchez, Mar; Styner, Martin; Niethammer, Marc | IEEE transactions on medical imaging | 23846465 | 2013 Oct |
| Variants in exons and in transcription factors affect gene expression in trans. | Kreimer, Anat; Pe'er, Itsik | Genome biology. | 23844908 | 2013; |
| Ground state destabilization by anionic nucleophiles contributes to the activity of phosphoryl transfer enzymes. | Andrews, Logan D; Fenn, Tim D; Herschlag, Daniel | PLoS biology | 23843744 | 2013 Jul |
| DTI Quality Control Assessment via Error Estimation From Monte Carlo Simulations. | Farzinfar, Mahshid; Li, Yin; Verde, Audrey R; Oguz, Ipek; Gerig, Guido; Styner, Martin A | Proceedings - Society of Photo-Optical Instrumentation Engineers | 23833547 | 2013 Mar 13 |
| Statistical shape modeling of cam femoroacetabular impingement. | Harris, Michael D; Datar, Manasi; Whitaker, Ross T; Jurrus, Elizabeth R; Peters, Christopher L; Anderson, Andrew E | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 23832798 | 2013 Oct |
| Unexpected effect of proton pump inhibitors: elevation of the cardiovascular risk factor asymmetric dimethylarginine. | Ghebremariam, Yohannes T; LePendu, Paea; Lee, Jerry C; Erlanson, Daniel A; Slaviero, Anna; Shah, Nigam H; Leiper, James; Cooke, John P | Circulation | 23825361 | 2013 Aug 20 |
| Sarcomere lengths in human extensor carpi radialis brevis measured by microendoscopy. | Cromie, Melinda J; Sanchez, Gabriel N; Schnitzer, Mark J; Delp, Scott L | Muscle & nerve | 23813625 | 2013 Aug |
| Inference of historical migration rates via haplotype sharing. | Palamara, Pier Francesco; Pe'er, Itsik | Bioinformatics (Oxford, England) | 23812983 | 2013 Jul 1 |
| Improving data and knowledge management to better integrate health care and research. | Cases, M; Furlong, L I; Albanell, J; Altman, R B; Bellazzi, R; Boyer, S; Brand, A; Brookes, A J; Brunak, S; Clark, T W; Gea, J; Ghazal, P; Graf, N; Guigo, R; Klein, T E; Lopez-Bigas, N; Maojo, V; Mons, B; Musen, M; Oliveira, J L; Rowe, A; Ruch, P; Shabo, | Journal of internal medicine. | 23808970 | 2013 Oct; |
| Adopting nested case-control quota sampling designs for the evaluation of risk markers. | Zheng, Yingye; Cai, Tianxi; Pepe, Margaret S | Lifetime data analysis | 23807695 | 2013 Oct |
| Decreased axial diffusivity within language connections: A possible biomarker of schizophrenia risk. | Kubicki, M; Shenton, M E; Maciejewski, P K; Pelavin, P E; Hawley, K J; Ballinger, T; Swisher, T; Jabbar, G A; Thermenos, H W; Keshavan, M S; Seidman, L J; Delisi, L E | Schizophrenia research | 23800617 | 2013 Aug |
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| Computational modeling of chemo-electro-mechanical coupling: a novel implicit monolithic finite element approach. | Wong, J; Goktepe, S; Kuhl, E | International journal for numerical methods in biomedical engineering | 23798328 | 2013 Oct |
| Intrinsic Regression Models for Medial Representation of Subcortical Structures. | Shi, Xiaoyan; Zhu, Hongtu; Ibrahim, Joseph G; Liang, Faming; Lieberman, Jeffrey; Styner, Martin | Journal of the American Statistical Association | 23794769 | 2012 Mar 1 |
| Increased gray matter diffusion anisotropy in patients with persistent post-concussive symptoms following mild traumatic brain injury. | Bouix, Sylvain; Pasternak, Ofer; Rathi, Yogesh; Pelavin, Paula E; Zafonte, Ross; Shenton, Martha E | PloS one | 23776631 | 2013 |
| Privacy technology to support data sharing for comparative effectiveness research: a systematic review. | Jiang, Xiaoqian; Sarwate, Anand D; Ohno-Machado, Lucila | Medical care | 23774511 | 2013 Aug |
| RHPN2 drives mesenchymal transformation in malignant glioma by triggering RhoA activation. | Danussi, Carla; Akavia, Uri David; Niola, Francesco; Jovic, Andreja; Lasorella, Anna; Pe'er, Dana; Iavarone, Antonio | Cancer research | 23774217 | 2013 Aug 15 |
| Biomechanical Model as a Registration Tool for Image-Guided Neurosurgery: Evaluation Against BSpline Registration. | Mostayed, Ahmed; Garlapati, Revanth Reddy; Joldes, Grand Roman; Wittek, Adam; Roy, Aditi; Kikinis, Ron; Warfield, Simon K; Miller, Karol | Annals of biomedical engineering | 23771299 | 2013 Jun 15 |
| Long-term 3-dimensional stability of mandibular advancement surgery. | Franco, Alexandre A; Cevidanes, Lucia Helena S; Phillips, Ceib; Rossouw, Paul Emile; Turvey, Timothy A; Carvalho, Felipe de Assis R; Paula, Leonardo K de; Quintao, Catia Cardoso A; Almeida, Marco Antonio O | Journal of oral and maxillofacial surgery : official journal of the American Association of Oral and Maxillofacial Surgeons. | 23769460 | 2013 Sep; |
| Normalization of Plasma 25-Hydroxy Vitamin D Is Associated with Reduced Risk of Surgery in Crohn's Disease. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Gainer, Vivian S; Cai, Tianxi; Cheng, Su-Chun; Savova, Guergana; Chen, Pei; Szolovits, Peter; Xia, Zongqi; De Jager, Philip L; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Kohane, Isaac; Plenge, Robe | Inflammatory bowel diseases | 23751398 | 2013 Jun 7 |
| Using Genome Query Language to uncover genetic variation. | Kozanitis, Christos; Heiberg, Andrew; Varghese, George; Bafna, Vineet | Bioinformatics (Oxford, England) | 23751181 | 2013 Jun 10 |
| Systematic improvement of a classical molecular model of water. | Wang, Lee-Ping; Head-Gordon, Teresa; Ponder, Jay W; Ren, Pengyu; Chodera, John D; Eastman, Peter K; Martinez, Todd J; Pande, Vijay S | The journal of physical chemistry. B | 23750713 | 2013 Aug 29 |
| Adaptive Distributed Video Coding with Correlation Estimation using Expectation Propagation. | Cui, Lijuan; Wang, Shuang; Jiang, Xiaoqian; Cheng, Samuel | Proceedings of SPIE | 23750314 | 2012 Oct 15 |
| Mechanical consequences of cell-wall turnover in the elongation of a Gram-positive bacterium. | Misra, Gaurav; Rojas, Enrique R; Gopinathan, Ajay; Huang, Kerwyn Casey | Biophysical journal | 23746506 | 2013 Jun 4 |
| Forward and inverse electroencephalographic modeling in health and in acute traumatic brain injury. | Irimia, Andrei; Matthew Goh, S Y; Torgerson, Carinna M; Chambers, Micah C; Kikinis, Ron; Van Horn, John D | Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology | 23746499 | 2013 Jun 5 |
| Automatic delineation of the myocardial wall from CT images via shape segmentation and variational region growing. | Zhu, Liangjia; Gao, Yi; Appia, Vikram; Yezzi, Anthony; Arepalli, Chesnal; Faber, Tracy; Stillman, Arthur; Tannenbaum, Allen | IEEE transactions on bio-medical engineering | 23744658 | 2013 Oct |
| TEMPORAL REGISTRATION OF PARTIAL DATA USING PARTICLE FILTERING. | Nir, Guy; Tannenbaum, Allen | Proceedings / ICIP ... International Conference on Image Processing | 23744132 | 2011 |
| Hypothalamic proteoglycan syndecan-3 is a novel cocaine addiction resilience factor. | Chen, Jihuan; Repunte-Canonigo, Vez; Kawamura, Tomoya; Lefebvre, Celine; Shin, William; Howell, Leonard L; Hemby, Scott E; Harvey, Brandon K; Califano, Andrea; Morales, Marisela; Koob, George F; Sanna, Pietro Paolo | Nature communications | 23736082 | 2013 |
| NCBO Technology: Powering semantically aware applications. | Whetzel, Patricia L; NCBO Team | Journal of biomedical semantics | 23734708 | 2013 Apr 15 |
| Evaluating genome architecture of a complex region via generalized bipartite matching. | Lo, Christine; Kim, Sangwoo; Zakov, Shay; Bafna, Vineet | BMC bioinformatics | 23734567 | 2013 |
| Extracting physician group intelligence from electronic health records to support evidence based medicine. | Weber, Griffin M; Kohane, Isaac S | PloS one | 23734227 | 2013 |
| Dynamic Active Contours for Visual Tracking. | Niethammer, Marc; Tannenbaum, Allen; Angenent, Sigurd | IEEE transactions on automatic control | 23729836 | 2006 |
| Spatial-temporal atlas of human fetal brain development during the early second trimester. | Zhan, Jinfeng; Dinov, Ivo D; Li, Junning; Zhang, Zhonghe; Hobel, Sam; Shi, Yonggang; Lin, Xiangtao; Zamanyan, Alen; Feng, Lei; Teng, Gaojun; Fang, Fang; Tang, Yuchun; Zang, Fengchao; Toga, Arthur W; Liu, Shuwei | NeuroImage | 23727529 | 2013 Nov 15 |
| Increased Cortical Thickness in Male-to-Female Transsexualism. | Luders, Eileen; Sánchez, Francisco J; Tosun, Duygu; Shattuck, David W; Gaser, Christian; Vilain, Eric; Toga, Arthur W | Journal of behavioral and brain science. | 23724358 | 2012 Aug; |
| Tracking Knee Joint Functional Axes through Tikhonov Filtering and Pl?cker Coordinates. | Kim, Wangdo; Kim, Yoon-Hyuk; Veloso, António P; Kohles, Sean S | Journal of novel physiotherapies. | 23720709 | 2013 Mar 01; |
| Practice-based evidence: profiling the safety of cilostazol by text-mining of clinical notes. | Leeper, Nicholas J; Bauer-Mehren, Anna; Iyer, Srinivasan V; Lependu, Paea; Olson, Cliff; Shah, Nigam H | PloS one | 23717437 | 2013 |
| Association between low density lipoprotein and rheumatoid arthritis genetic factors with low density lipoprotein levels in rheumatoid arthritis and non-rheumatoid arthritis controls. | Liao, Katherine P; Diogo, Dorothee; Cui, Jing; Cai, Tianxi; Okada, Yukinori; Gainer, Vivian S; Murphy, Shawn N; Gupta, Namrata; Mirel, Daniel; Ananthakrishnan, Ashwin N; Szolovits, Peter; Shaw, Stanley Y; Raychaudhuri, Soumya; Churchill, Susanne; Kohane, | Annals of the rheumatic diseases | 23716066 | 2013 May 28 |
| Polymer Adsorption on Curved Surfaces: A Geometric Approach. | Hershkovits, Eli; Tannenbaum, Allen; Tannenbaum, Rina | The journal of physical chemistry. C, Nanomaterials and interfaces | 23710263 | 2007 Aug 23 |
| VOXEL-WISE GROUP ANALYSIS OF DTI. | Liu, Zhexing; Zhu, Hongtu; Marks, Bonita L; Katz, Laurence M; Goodlett, Casey B; Gerig, Guido; Styner, Martin | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 23703686 | 2009 |
| A rolling constraint reproduces ground reaction forces and moments in dynamic simulations of walking, running, and crouch gait. | Hamner, Samuel R; Seth, Ajay; Steele, Katherine M; Delp, Scott L | Journal of biomechanics | 23702045 | 2013 Jun 21 |
| Human genetics in rheumatoid arthritis guides a high-throughput drug screen of the CD40 signaling pathway. | Li, Gang; Diogo, Dorothee; Wu, Di; Spoonamore, Jim; Dancik, Vlado; Franke, Lude; Kurreeman, Fina; Rossin, Elizabeth J; Duclos, Grant; Hartland, Cathy; Zhou, Xuezhong; Li, Kejie; Liu, Jun; De Jager, Philip L; Siminovitch, Katherine A; Zhernakova, Alexandra | PLoS genetics | 23696745 | 2013 May |
| Inferences on the biochemical and environmental regulation of universal stress proteins from Schistosomiasis parasites. | Mbah, Andreas N; Mahmud, Ousman; Awofolu, Omotayo R; Isokpehi, Raphael D | Advances and applications in bioinformatics and chemistry : AABC. | 23696708 | 2013; |
| Ventricular enlargement and its clinical correlates in the imaging cohort from the ADCS MCI donepezil/vitamin E study. | Apostolova, Liana G; Babakchanian, Sona; Hwang, Kristy S; Green, Amity E; Zlatev, Dimitar; Chou, Yi-Yu; DeCarli, Charlie; Jack Jr, Clifford R; Petersen, Ronald C; Aisen, Paul S; Cummings, Jeffrey L; Toga, Arthur W; Thompson, Paul M | Alzheimer disease and associated disorders | 23694947 | 2013 Apr-Jun |
| Impact of sex and gonadal steroids on neonatal brain structure. | Knickmeyer, Rebecca C; Wang, Jiaping; Zhu, Hongtu; Geng, Xiujuan; Woolson, Sandra; Hamer, Robert M; Konneker, Thomas; Styner, Martin; Gilmore, John H | Cerebral cortex (New York, N.Y. : 1991). | 23689636 | 2014 Oct; |
| Morse-Smale Regression. | Gerber, Samuel; Rubel, Oliver; Bremer, Peer-Timo; Pascucci, Valerio; Whitaker, Ross T | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 23687424 | 2013 Jan 1 |
| A flexible framework for recognizing events, temporal expressions, and temporal relations in clinical text. | Roberts, Kirk; Rink, Bryan; Harabagiu, Sanda M | Journal of the American Medical Informatics Association : JAMIA | 23686936 | 2013 May 18 |
| Human middle longitudinal fascicle: segregation and behavioral-clinical implications of two distinct fiber connections linking temporal pole and superior temporal gyrus with the angular gyrus or superior parietal lobule using multi-tensor tractography. | Makris, N; Preti, M G; Wassermann, D; Rathi, Y; Papadimitriou, G M; Yergatian, C; Dickerson, B C; Shenton, M E; Kubicki, M | Brain imaging and behavior | 23686576 | 2013 Sep |
| Shape-Based Approach to Robust Image Segmentation using Kernel PCA. | Dambreville, Samuel; Rathi, Yogesh; Tannenbaum, Allen | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 23685633 | 2006 |
| viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia. | Amir, El-ad David; Davis, Kara L; Tadmor, Michelle D; Simonds, Erin F; Levine, Jacob H; Bendall, Sean C; Shenfeld, Daniel K; Krishnaswamy, Smita; Nolan, Garry P; Pe'er, Dana | Nature biotechnology | 23685480 | 2013 Jun |
| COMBINING ATLAS AND ACTIVE CONTOUR FOR AUTOMATIC 3D MEDICAL IMAGE SEGMENTATION. | Gao, Yi; Tannenbaum, Allen | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 23685464 | 2011 |
| Diffusion imaging quality control via entropy of principal direction distribution. | Farzinfar, Mahshid; Oguz, Ipek; Smith, Rachel G; Verde, Audrey R; Dietrich, Cheryl; Gupta, Aditya; Escolar, Maria L; Piven, Joseph; Pujol, Sonia; Vachet, Clement; Gouttard, Sylvain; Gerig, Guido; Dager, Stephen; McKinstry, Robert C; Paterson, Sarah; Evans | NeuroImage | 23684874 | 2013 Nov 15 |
| A Graph Cut Approach to Image Segmentation in Tensor Space. | Malcolm, James; Rathi, Yogesh; Tannenbaum, Allen | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 23680693 | 2008 |
| Temporal reasoning over clinical text: the state of the art. | Sun, Weiyi; Rumshisky, Anna; Uzuner, Ozlem | Journal of the American Medical Informatics Association : JAMIA | 23676245 | 2013 May 15 |
| Beyond NPM-anaplastic lymphoma kinase driven lymphomagenesis: alternative drivers in anaplastic large cell lymphoma. | Tabbo, Fabrizio; Ponzoni, Maurilio; Rabadan, Raul; Bertoni, Francesco; Inghirami, Giorgio; the European T-cell Lymphoma Study Group | Current opinion in hematology | 23673339 | 2013 Jul |
| Improving breast cancer survival analysis through competition-based multidimensional modeling. | Bilal, Erhan; Dutkowski, Janusz; Guinney, Justin; Jang, In Sock; Logsdon, Benjamin A; Pandey, Gaurav; Sauerwine, Benjamin A; Shimoni, Yishai; Moen Vollan, Hans Kristian; Mecham, Brigham H; Rueda, Oscar M; Tost, Jorg; Curtis, Christina; Alvarez, Mariano J; | PLoS computational biology | 23671412 | 2013 May |
| KERNEL-BASED HIGH-DIMENSIONAL HISTOGRAM ESTIMATION FOR VISUAL TRACKING. | Karasev, Peter; Malcolm, James; Tannenbaum, Allen | Proceedings / ICIP ... International Conference on Image Processing | 23666258 | 2008 |
| SEMI-SUPERVISED OBJECT RECOGNITION USING STRUCTURE KERNEL. | Wang, Botao; Xiong, Hongkai; Jiang, Xiaoqian; Ling, Fan | Proceedings / ICIP ... International Conference on Image Processing | 23666108 | 2012 |
| Reprever: resolving low-copy duplicated sequences using template driven assembly. | Kim, Sangwoo; Medvedev, Paul; Paton, Tara A; Bafna, Vineet | Nucleic acids research | 23658221 | 2013 Jul 1 |
| HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses. | Contreras-Galindo, Rafael; Kaplan, Mark H; He, Shirley; Contreras-Galindo, Angie C; Gonzalez-Hernandez, Marta J; Kappes, Ferdinand; Dube, Derek; Chan, Susana M; Robinson, Dan; Meng, Fan; Dai, Manhong; Gitlin, Scott D; Chinnaiyan, Arul M; Omenn, Gilbert S; | Genome research | 23657884 | 2013 Sep |
| HIV Infection Reveals Wide-Spread Expansion of Novel Centromeric Human Endogenous Retroviruses. | Contreras-Galindo, Rafael; Kaplan, Mark H; He, Shirley; Contreras-Galindo, Angie C; Gonzalez-Hernandez, Marta J; Kappes, Ferdinand; Dube, Derek; Chan, Susana M; Robinson, Dan; Meng, Fan; Dai, Manhong; Gitlin, Scott D; Chinnaiyan, Arul M; Omenn, Gilbert S; | Genome research | 23657884 | 2013 May 8 |
| Surgery, virtual reality, and the future. | Vosburgh, Kirby G; Golby, Alexandra; Pieper, Steven D | Studies in health technology and informatics | 23653952 | 2013 |
| Localized Statistics for DW-MRI Fiber Bundle Segmentation. | Lankton, Shawn; Melonakos, John; Malcolm, James; Dambreville, Samuel; Tannenbaum, Allen | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 23652079 | 2008 |
| Genome wide proteomics of ERBB2 and EGFR and other oncogenic pathways in inflammatory breast cancer. | Zhang, Emma Yue; Cristofanilli, Massimo; Robertson, Fredika; Reuben, James M; Mu, Zhaomei; Beavis, Ronald C; Im, Hogune; Snyder, Michael; Hofree, Matan; Ideker, Trey; Omenn, Gilbert S; Fanayan, Susan; Jeong, Seul-Ki; Paik, Young-Ki; Zhang, Anna Fan; Wu, S | Journal of proteome research | 23647160 | 2013 Jun 7 |
| MATHEMATICAL METHODS IN MEDICAL IMAGE PROCESSING. | Angenent, Sigurd; Pichon, Eric; Tannenbaum, Allen | Bulletin (new series) of the American Mathematical Society | 23645963 | 2006 |
| MULTIVARIATE VARYING COEFFICIENT MODEL FOR FUNCTIONAL RESPONSES. | Zhu, Hongtu; Li, Runze; Kong, Linglong | Annals of statistics | 23645942 | 2012 Oct 1 |
| TRACKING THROUGH CHANGES IN SCALE. | Lankton, Shawn; Malcolm, James; Nakhmani, Arie; Tannenbaum, Allen | Proceedings / ICIP ... International Conference on Image Processing | 23645076 | 2008 |
| Enhanced modeling via network theory: Adaptive sampling of Markov state models. | Bowman, Gregory R; Ensign, Daniel L; Pande, Vijay S | Journal of chemical theory and computation. | 23626502 | 2010; |
| Growth on demand: Reviewing the mechanobiology of stretched skin. | Zollner, Alexander M; Holland, Maria A; Honda, Kord S; Gosain, Arun K; Kuhl, Ellen | Journal of the mechanical behavior of biomedical materials | 23623569 | 2013 Apr 3 |
| Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems. | Gholami, Behnood; Bailey, James M; Haddad, Wassim M; Tannenbaum, Allen R | IEEE transactions on control systems technology : a publication of the IEEE Control Systems Society | 23620646 | 2012 Mar |
| Optical flow estimation for flame detection in videos. | Mueller, Martin; Karasev, Peter; Kolesov, Ivan; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 23613042 | 2013 Jul |
| Genetic contributions to changes of fiber tracts of ventral visual stream in 22q11.2 deletion syndrome. | Kikinis, Zora; Makris, Nikos; Finn, Christine T; Bouix, Sylvain; Lucia, Diandra; Coleman, Michael J; Tworog-Dube, Erica; Kikinis, Ron; Kucherlapati, Raju; Shenton, Martha E; Kubicki, Marek | Brain imaging and behavior | 23612843 | 2013 Apr 24 |
| Lateral ventricle morphology analysis via mean latitude axis. | Paniagua, Beatriz; Lyall, Amanda; Berger, Jean-Baptiste; Vachet, Clement; Hamer, Robert M; Woolson, Sandra; Lin, Weili; Gilmore, John; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 23606800 | 2013 Mar 29 |
| On the mechanics of continua with boundary energies and growing surfaces. | Papastavrou, Areti; Steinmann, Paul; Kuhl, Ellen | Journal of the mechanics and physics of solids | 23606760 | 2013 Jun 1 |
| Combining rules and machine learning for extraction of temporal expressions and events from clinical narratives. | Kovacevic, Aleksandar; Dehghan, Azad; Filannino, Michele; Keane, John A; Nenadic, Goran | Journal of the American Medical Informatics Association : JAMIA | 23605114 | 2013 Apr 20 |
| Heterogeneity of tumor-induced gene expression changes in the human metabolic network. | Hu, Jie; Locasale, Jason W; Bielas, Jason H; O'Sullivan, Jacintha; Sheahan, Kieran; Cantley, Lewis C; Heiden, Matthew G Vander; Vitkup, Dennis | Nature biotechnology | 23604282 | 2013 Jun |
| Innovations in proteomic profiling of cancers: alternative splice variants as a new class of cancer biomarker candidates and bridging of proteomics with structural biology. | Omenn, Gilbert S; Menon, Rajasree; Zhang, Yang | Journal of proteomics | 23603631 | 2013 Sep 2 |
| Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer. | Margolin, Adam A; Bilal, Erhan; Huang, Erich; Norman, Thea C; Ottestad, Lars; Mecham, Brigham H; Sauerwine, Ben; Kellen, Michael R; Mangravite, Lara M; Furia, Matthew D; Vollan, Hans Kristian Moen; Rueda, Oscar M; Guinney, Justin; Deflaux, Nicole A; Hoff, | Science translational medicine | 23596205 | 2013 Apr 17 |
| Dominant effects of the Huntington's disease HTT CAG repeat length are captured in gene-expression data sets by a continuous analysis mathematical modeling strategy. | Lee, Jong-Min; Galkina, Ekaterina I; Levantovsky, Rachel M; Fossale, Elisa; Anne Anderson, Mary; Gillis, Tammy; Srinidhi Mysore, Jayalakshmi; Coser, Kathryn R; Shioda, Toshi; Zhang, Bin; Furia, Matthew D; Derry, Jonathan; Kohane, Isaac S; Seong, Ihn Sik; | Human molecular genetics | 23595883 | 2013 Aug 15 |
| ENTROPY BASED DTI QUALITY CONTROL VIA REGIONAL ORIENTATION DISTRIBUTION. | Farzinfar, M; Dietrich, C; Smith, Rg; Li, Y; Gupta, A; Liu, Z; Styner, Ma | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 23595508 | 2012 |
| Imaging patients with psychosis and a mouse model establishes a spreading pattern of hippocampal dysfunction and implicates glutamate as a driver. | Schobel, Scott A; Chaudhury, Nashid H; Khan, Usman A; Paniagua, Beatriz; Styner, Martin A; Asllani, Iris; Inbar, Benjamin P; Corcoran, Cheryl M; Lieberman, Jeffrey A; Moore, Holly; Small, Scott A | Neuron | 23583108 | 2013 Apr 10 |
| Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways. | Rardin, Matthew J; Newman, John C; Held, Jason M; Cusack, Michael P; Sorensen, Dylan J; Li, Biao; Schilling, Birgit; Mooney, Sean D; Kahn, C Ronald; Verdin, Eric; Gibson, Bradford W | Proceedings of the National Academy of Sciences of the United States of America | 23576753 | 2013 Apr 16 |
| Probing DNA shape and methylation state on a genomic scale with DNase I. | Lazarovici, Allan; Zhou, Tianyin; Shafer, Anthony; Dantas Machado, Ana Carolina; Riley, Todd R; Sandstrom, Richard; Sabo, Peter J; Lu, Yan; Rohs, Remo; Stamatoyannopoulos, John A; Bussemaker, Harmen J | Proceedings of the National Academy of Sciences of the United States of America | 23576721 | 2013 Apr 16 |
| Towards improved ultrasound-based analysis and 3D visualization of the fetal brain using the 3D Slicer. | Oyama, R; Jakab, M; Kikuchi, A; Sugiyama, T; Kikinis, R; Pujol, S | Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology | 23576282 | 2013 Nov |
| Eventual situations for timeline extraction from clinical reports. | Grouin, Cyril; Grabar, Natalia; Hamon, Thierry; Rosset, Sophie; Tannier, Xavier; Zweigenbaum, Pierre | Journal of the American Medical Informatics Association : JAMIA | 23571851 | 2013 Apr 9 |
| A hybrid system for temporal information extraction from clinical text. | Tang, Buzhou; Wu, Yonghui; Jiang, Min; Chen, Yukun; Denny, Joshua C; Xu, Hua | Journal of the American Medical Informatics Association : JAMIA | 23571849 | 2013 Apr 9 |
| Pharmacovigilance using clinical notes. | LePendu, P; Iyer, S V; Bauer-Mehren, A; Harpaz, R; Mortensen, J M; Podchiyska, T; Ferris, T A; Shah, N H | Clinical pharmacology and therapeutics | 23571773 | 2013 Jun |
| Performance of pharmacovigilance signal-detection algorithms for the FDA adverse event reporting system. | Harpaz, R; DuMouchel, W; LePendu, P; Bauer-Mehren, A; Ryan, P; Shah, N H | Clinical pharmacology and therapeutics | 23571771 | 2013 Jun |
| Diffusion weighted imaging of prefrontal cortex in prodromal huntington's disease. | Matsui, Joy T; Vaidya, Jatin G; Johnson, Hans J; Magnotta, Vincent A; Long, Jeffrey D; Mills, James A; Lowe, Mark J; Sakaie, Ken E; Rao, Stephen M; Smith, Megan M; Paulsen, Jane S | Human brain mapping | 23568433 | 2013 Apr 9 |
| Building Spatiotemporal Anatomical Models using Joint 4-D Segmentation, Registration, and Subject-Specific Atlas Estimation. | Prastawa, Marcel; Awate, Suyash P; Gerig, Guido | Proceedings / sponsored by IEEE Computer Society Technical Committee on Pattern Analysis and Machine Intelligence. Workshop on Mathematical Methods in Biomedical Image Analysis. | 23568185 | 2012; |
| Improving Case Definition of Crohn's Disease and Ulcerative Colitis in Electronic Medical Records Using Natural Language Processing: A Novel Informatics Approach. | Ananthakrishnan, Ashwin N; Cai, Tianxi; Savova, Guergana; Cheng, Su-Chun; Chen, Pei; Perez, Raul Guzman; Gainer, Vivian S; Murphy, Shawn N; Szolovits, Peter; Xia, Zongqi; Shaw, Stanley; Churchill, Susanne; Karlson, Elizabeth W; Kohane, Isaac; Plenge, Robe | Inflammatory bowel diseases | 23567779 | 2013 Jun |
| Evaluating temporal relations in clinical text: 2012 i2b2 Challenge. | Sun, Weiyi; Rumshisky, Anna; Uzuner, Ozlem | Journal of the American Medical Informatics Association : JAMIA | 23564629 | 2013 Apr 5 |
| EXpectation Propagation LOgistic REgRession (EXPLORER): Distributed privacy-preserving online model learning. | Wang, Shuang; Jiang, Xiaoqian; Wu, Yuan; Cui, Lijuan; Cheng, Samuel; Ohno-Machado, Lucila | Journal of biomedical informatics | 23562651 | 2013 Jun |
| A controlled greedy supervised approach for co-reference resolution on clinical text. | Chowdhury, Md Faisal Mahbub; Zweigenbaum, Pierre | Journal of biomedical informatics | 23562650 | 2013 Jun |
| Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. | Sohn, Sunghwan; Wagholikar, Kavishwar B; Li, Dingcheng; Jonnalagadda, Siddhartha R; Tao, Cui; Elayavilli, Ravikumar Komandur; Liu, Hongfang | Journal of the American Medical Informatics Association : JAMIA | 23558168 | 2013 Apr 4 |
| Natural Language Processing to identify pneumonia from radiology reports. | Dublin, Sascha; Baldwin, Eric; Walker, Rod L; Christensen, Lee M; Haug, Peter J; Jackson, Michael L; Nelson, Jennifer C; Ferraro, Jeffrey; Carrell, David; Chapman, Wendy W | Pharmacoepidemiology and drug safety | 23554109 | 2013 Aug |
| The stationary configuration of the knee. | Kim, Wangdo; Veloso, Antonio P; Vleck, Veronica E; Andrade, Carlos; Kohles, Sean S | Journal of the American Podiatric Medical Association | 23536503 | 2013 Mar-Apr |
| SHRINE: enabling nationally scalable multi-site disease studies. | McMurry, Andrew J; Murphy, Shawn N; MacFadden, Douglas; Weber, Griffin; Simons, William W; Orechia, John; Bickel, Jonathan; Wattanasin, Nich; Gilbert, Clint; Trevvett, Philip; Churchill, Susanne; Kohane, Isaac S | PloS one | 23533569 | 2013 |
| MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples. | Trifonov, Vladimir; Pasqualucci, Laura; Dalla Favera, Riccardo; Rabadan, Raul | BMC systems biology | 23531283 | 2013 |
| An informational framework to predict reaction of constraints using a reciprocally connected knee model. | Kim, Wangdo; Veloso, Antonio P; Araújo, Duarte; Vleck, Veronica; João, Filipa | Computer methods in biomechanics and biomedical engineering. | 23528152 | 2015; |
| A la Recherche du Temps Perdu: extracting temporal relations from medical text in the 2012 i2b2 NLP challenge. | Cherry, Colin; Zhu, Xiaodan; Martin, Joel; de Bruijn, Berry | Journal of the American Medical Informatics Association : JAMIA | 23523875 | 2013 Mar 23 |
| White Matter Microstructure and Atypical Visual Orienting in 7-Month-Olds at Risk for Autism. | Elison, Jed T; Paterson, Sarah J; Wolff, Jason J; Reznick, J Steven; Sasson, Noah J; Gu, Hongbin; Botteron, Kelly N; Dager, Stephen R; Estes, Annette M; Evans, Alan C; Gerig, Guido; Hazlett, Heather C; Schultz, Robert T; Styner, Martin; Zwaigenbaum, Lonni | The American journal of psychiatry | 23511344 | 2013 Mar 20 |
| An algorithmic approach for breakage-fusion-bridge detection in tumor genomes. | Zakov, Shay; Kinsella, Marcus; Bafna, Vineet | Proceedings of the National Academy of Sciences of the United States of America | 23503850 | 2013 Apr 2 |
| A New Distance Measure Based on Generalized Image Normalized Cross-Correlation for Robust Video Tracking and Image Recognition. | Nakhmani, Arie; Tannenbaum, Allen | Pattern recognition letters | 23503649 | 2013 Feb 1 |
| Six-week gait retraining program reduces knee adduction moment, reduces pain, and improves function for individuals with medial compartment knee osteoarthritis. | Shull, Pete B; Silder, Amy; Shultz, Rebecca; Dragoo, Jason L; Besier, Thor F; Delp, Scott L; Cutkosky, Mark R | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 23494804 | 2013 Jul |
| Landmark risk prediction of residual life for breast cancer survival. | Parast, Layla; Cai, Tianxi | Statistics in medicine | 23494768 | 2013 Mar 14 |
| Conformation guides molecular efficacy in docking screens of activated ýý-2 adrenergic G protein coupled receptor. | Weiss, Dahlia R; Ahn, SeungKirl; Sassano, Maria F; Kleist, Andrew; Zhu, Xiao; Strachan, Ryan; Roth, Bryan L; Lefkowitz, Robert J; Shoichet, Brian K | ACS chemical biology | 23485065 | 2013 May 17 |
| Differential expression of miR-145 in children with Kawasaki disease. | Shimizu, Chisato; Kim, Jihoon; Stepanowsky, Petra; Trinh, Christine; Lau, Hubert D; Akers, Johnny C; Chen, Clark; Kanegaye, John T; Tremoulet, Adriana; Ohno-Machado, Lucila; Burns, Jane C | PloS one | 23483985 | 2013 |
| How muscle fiber lengths and velocities affect muscle force generation as humans walk and run at different speeds. | Arnold, Edith M; Hamner, Samuel R; Seth, Ajay; Millard, Matthew; Delp, Scott L | The Journal of experimental biology | 23470656 | 2013 Jun 1 |
| An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge. | Xu, Yan; Wang, Yining; Liu, Tianren; Tsujii, Junichi; Chang, Eric I-Chao | Journal of the American Medical Informatics Association : JAMIA | 23467472 | 2013 Mar 6 |
| Web-scale pharmacovigilance: listening to signals from the crowd. | White, Ryen W; Tatonetti, Nicholas P; Shah, Nigam H; Altman, Russ B; Horvitz, Eric | Journal of the American Medical Informatics Association : JAMIA | 23467469 | 2013 May 1 |
| Automating the study of population variation of electrocardiographic features. | Kohane, Isaac S | Circulation | 23463856 | 2013 Apr 2 |
| Referent tracking for treatment optimisation in schizophrenic patients: A case study in applying philosophical ontology to diagnostic algorithms. | Ceusters, Werner; Smith, Barry | Web semantics (Online) | 23459504 | 2006 Sep 1 |
| Stretching skin: The physiological limit and beyond. | Tepole, Adrian Buganza; Gosain, Arun K; Kuhl, Ellen | International journal of non-linear mechanics | 23459410 | 2012 Oct |
| GBM volumetry using the 3D Slicer medical image computing platform. | Egger, Jan; Kapur, Tina; Fedorov, Andriy; Pieper, Steve; Miller, James V; Veeraraghavan, Harini; Freisleben, Bernd; Golby, Alexandra J; Nimsky, Christopher; Kikinis, Ron | Scientific reports | 23455483 | 2013 |
| Flexing computational muscle: modeling and simulation of musculotendon dynamics. | Millard, Matthew; Uchida, Thomas; Seth, Ajay; Delp, Scott L | Journal of biomechanical engineering | 23445050 | 2013 Feb |
| Comparison of four prediction models to discriminate benign from malignant vertebral compression fractures according to MRI feature analysis. | Thawait, Shrey K; Kim, Jihoon; Klufas, Roman A; Morrison, William B; Flanders, Adam E; Carrino, John A; Ohno-Machado, Lucila | AJR. American journal of roentgenology | 23436836 | 2013 Mar |
| From single nucleotide polymorphism to transcriptional mechanism: a model for FRMD3 in diabetic nephropathy. | Martini, Sebastian; Nair, Viji; Patel, Sanjeevkumar R; Eichinger, Felix; Nelson, Robert G; Weil, E Jennifer; Pezzolesi, Marcus G; Krolewski, Andrzej S; Randolph, Ann; Keller, Benjamin J; Werner, Thomas; Kretzler, Matthias | Diabetes | 23434934 | 2013 Jul |
| Joint CT/CBCT deformable registration and CBCT enhancement for cancer radiotherapy. | Lou, Yifei; Niu, Tianye; Jia, Xun; Vela, Patricio A; Zhu, Lei; Tannenbaum, Allen R | Medical image analysis | 23433756 | 2013 Apr |
| MetaSeq: privacy preserving meta-analysis of sequencing-based association studies. | Singh, Angad Pal; Zafer, Samreen; Pe'er, Itsik | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 23424140 | 2013 |
| Insights into diseases of human telomerase from dynamical modeling. | Flores, Samuel Coulbourn; Zemora, Georgeta; Waldsich, Christina | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 23424125 | 2013; |
| Molecular dynamics simulations for the ranking, evaluation, and refinement of computationally designed proteins. | Kiss, Gert; Pande, Vijay S; Houk, K N | Methods in enzymology. | 23422429 | 2013; |
| Wessim: a whole-exome sequencing simulator based on in silico exome capture. | Kim, Sangwoo; Jeong, Kyowon; Bafna, Vineet | Bioinformatics (Oxford, England) | 23413434 | 2013 Apr 15 |
| STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation. | Wittkop, Tobias; TerAvest, Emily; Evani, Uday S; Fleisch, K Mathew; Berman, Ari E; Powell, Corey; Shah, Nigam H; Mooney, Sean D | BMC bioinformatics | 23409969 | 2013 |
| N-glycoproteome of E14.Tg2a mouse embryonic stem cells. | Sun, Bingyun; Ma, Li; Yan, Xiaowei; Lee, Denis; Alexander, Vinita; Hohmann, Laura J; Lorang, Cynthia; Chandrasena, Lalangi; Tian, Qiang; Hood, Leroy | PloS one | 23405203 | 2013 |
| One-year assessment of surgical outcomes in Class III patients using cone beam computed tomography. | de Paula, L K; Ruellas, A C O; Paniagua, B; Styner, M; Turvey, T; Zhu, H; Wang, J; Cevidanes, L H S | International journal of oral and maxillofacial surgery. | 23403336 | 2013 Jun; |
| Abnormal aldosterone physiology and cardiometabolic risk factors. | Vaidya, Anand; Underwood, Patricia C; Hopkins, Paul N; Jeunemaitre, Xavier; Ferri, Claudio; Williams, Gordon H; Adler, Gail K | Hypertension | 23399714 | 2013 Apr |
| Classic "broken cell" techniques and newer live cell methods for cell cycle assessment. | Henderson, Lindsay; Bortone, Dante S; Lim, Curtis; Zambon, Alexander C | American journal of physiology. Cell physiology | 23392113 | 2013 May 15 |
| Properties of cell death models calibrated and compared using Bayesian approaches. | Eydgahi, Hoda; Chen, William W; Muhlich, Jeremy L; Vitkup, Dennis; Tsitsiklis, John N; Sorger, Peter K | Molecular systems biology | 23385484 | 2013 |
| Detecting concept relations in clinical text: insights from a state-of-the-art model. | Zhu, Xiaodan; Cherry, Colin; Kiritchenko, Svetlana; Martin, Joel; de Bruijn, Berry | Journal of biomedical informatics | 23380683 | 2013 Apr |
| Recursive feature elimination for brain tumor classification using desorption electrospray ionization mass spectrometry imaging. | Gholami, Behnood; Norton, Isaiah; Tannenbaum, Allen R; Agar, Nathalie Y R | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 23367115 | 2012 |
| Automatic segmentation of the left atrium from MRI images using salient feature and contour evolution. | Zhu, Liangjia; Gao, Yi; Yezzi, Anthony; MacLeod, Rob; Cates, Joshua; Tannenbaum, Allen | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 23366609 | 2012 |
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| QT interval and antidepressant use: a cross sectional study of electronic health records. | Castro, Victor M; Clements, Caitlin C; Murphy, Shawn N; Gainer, Vivian S; Fava, Maurizio; Weilburg, Jeffrey B; Erb, Jane L; Churchill, Susanne E; Kohane, Isaac S; Iosifescu, Dan V; Smoller, Jordan W; Perlis, Roy H | BMJ (Clinical research ed.) | 23360890 | 2013 |
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| Pharmacokinetics and pharmacodynamics of oral artesunate monotherapy in patients with uncomplicated Plasmodium falciparum malaria in western Cambodia. | Saunders, David; Khemawoot, Phisit; Vanachayangkul, Pattaraporn; Siripokasupkul, Raveewan; Bethell, Delia; Tyner, Stuart; Se, Youry; Rutvisuttinunt, Wiriya; Sriwichai, Sabaithip; Chanthap, Lon; Lin, Jessica; Timmermans, Ans; Socheat, Doung; Ringwald, Pascal; Noedl, Harald; Smith, Bryan; Fukuda, Mark; Teja-Isavadharm, Paktiya | Antimicrobial agents and chemotherapy. | 22869581 | 2012 Nov; |
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| A role for ephrin-A5 in axonal sprouting, recovery, and activity-dependent plasticity after stroke. | Overman, Justine J; Clarkson, Andrew N; Wanner, Ina B; Overman, William T; Eckstein, Ilya; Maguire, Jaime L; Dinov, Ivo D; Toga, Arthur W; Carmichael, S Thomas | Proceedings of the National Academy of Sciences of the United States of America | 22837401 | 2012 Aug 14 |
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| Brain volume findings in 6-month-old infants at high familial risk for autism. | Hazlett, Heather Cody; Gu, Hongbin; McKinstry, Robert C; Shaw, Dennis W W; Botteron, Kelly N; Dager, Stephen R; Styner, Martin; Vachet, Clement; Gerig, Guido; Paterson, Sarah J; Schultz, Robert T; Estes, Annette M; Evans, Alan C; Piven, Joseph; IBIS Netwo | The American journal of psychiatry | 22684595 | 2012 Jun |
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| Limbic system white matter microstructure and long-term treatment outcome in major depressive disorder: a diffusion tensor imaging study using legacy data. | Hoogenboom, Wouter S; Perlis, Roy H; Smoller, Jordan W; Zeng-Treitler, Qing; Gainer, Vivian S; Murphy, Shawn N; Churchill, Susanne E; Kohane, Isaac S; Shenton, Martha E; Iosifescu, Dan V | The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. | 22540406 | 2014 Feb; |
| Vitamin D3 therapy corrects the tissue sensitivity to angiotensin ii akin to the action of a converting enzyme inhibitor in obese hypertensives: an interventional study. | Vaidya, Anand; Sun, Bei; Larson, Carol; Forman, John P; Williams, Jonathan S | The Journal of clinical endocrinology and metabolism | 22539586 | 2012 Jul |
| Genome-wide association identifies the T gene as a novel asthma pharmacogenetic locus. | Tantisira, Kelan G; Damask, Amy; Szefler, Stanley J; Schuemann, Brooke; Markezich, Amy; Su, Jessica; Klanderman, Barbara; Sylvia, Jody; Wu, Rongling; Martinez, Fernando; Boushey, Homer A; Chinchilli, Vernon M; Mauger, Dave; Weiss, Scott T; Israel, Elliot; | American journal of respiratory and critical care medicine | 22538805 | 2012 Jun 15 |
| THINK Back: KNowledge-based Interpretation of High Throughput data. | Farfan, Fernando; Ma, Jun; Sartor, Maureen A; Michailidis, George; Jagadish, Hosagrahar V | BMC bioinformatics | 22536867 | 2012 |
| Lysine-specific demethylase 1: an epigenetic regulator of salt-sensitive hypertension. | Williams, Jonathan S; Chamarthi, Bindu; Goodarzi, Mark O; Pojoga, Luminita H; Sun, Bei; Garza, Amanda E; Raby, Benjamin A; Adler, Gail K; Hopkins, Paul N; Brown, Nancy J; Jeunemaitre, Xavier; Ferri, Claudio; Fang, Rui; Leonor, Thiago; Cui, Jinrui; Guo, Xi | American journal of hypertension | 22534796 | 2012 Jul |
| Functional organization and its implication in evolution of the human protein-protein interaction network. | Zhao, Yiqiang; Mooney, Sean D | BMC genomics | 22530615 | 2012 |
| An image analysis toolbox for high-throughput C. elegans assays. | Wahlby, Carolina; Kamentsky, Lee; Liu, Zihan H; Riklin-Raviv, Tammy; Conery, Annie L; O'Rourke, Eyleen J; Sokolnicki, Katherine L; Visvikis, Orane; Ljosa, Vebjorn; Irazoqui, Javier E; Golland, Polina; Ruvkun, Gary; Ausubel, Frederick M; Carpenter, Anne E | Nature methods | 22522656 | 2012 Jul |
| Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4. | Dapito, Dianne H; Mencin, Ali; Gwak, Geum-Youn; Pradere, Jean-Philippe; Jang, Myoung-Kuk; Mederacke, Ingmar; Caviglia, Jorge M; Khiabanian, Hossein; Adeyemi, Adebowale; Bataller, Ramon; Lefkowitch, Jay H; Bower, Maureen; Friedman, Richard; Sartor, R Balfo | Cancer cell | 22516259 | 2012 Apr 17 |
| The co-morbidity burden of children and young adults with autism spectrum disorders. | Kohane, Isaac S; McMurry, Andrew; Weber, Griffin; MacFadden, Douglas; Rappaport, Leonard; Kunkel, Louis; Bickel, Jonathan; Wattanasin, Nich; Spence, Sarah; Murphy, Shawn; Churchill, Susanne | PloS one | 22511918 | 2012 |
| Protecting count queries in study design. | Vinterbo, Staal A; Sarwate, Anand D; Boxwala, Aziz A | Journal of the American Medical Informatics Association : JAMIA | 22511018 | 2012 Sep-Oct |
| Grid Binary LOgistic REgression (GLORE): building shared models without sharing data. | Wu, Yuan; Jiang, Xiaoqian; Kim, Jihoon; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 22511014 | 2012 Sep-Oct |
| Quantitative tract-based white matter development from birth to age 2years. | Geng, Xiujuan; Gouttard, Sylvain; Sharma, Anuja; Gu, Hongbin; Styner, Martin; Lin, Weili; Gerig, Guido; Gilmore, John H | NeuroImage | 22510254 | 2012 Jul 2 |
| Particle Filtering with Region-based Matching for Tracking of Partially Occluded and Scaled Targets. | Nakhmani, Arie; Tannenbaum, Allen | SIAM journal on imaging sciences | 22506088 | 2011 Mar 9 |
| A classification approach to coreference in discharge summaries: 2011 i2b2 challenge. | Xu, Yan; Liu, Jiahua; Wu, Jiajun; Wang, Yue; Tu, Zhuowen; Sun, Jian-Tao; Tsujii, Junichi; Chang, Eric I-Chao | Journal of the American Medical Informatics Association : JAMIA | 22505762 | 2012 Sep-Oct |
| Structure-based drug screening for G-protein-coupled receptors. | Shoichet, Brian K; Kobilka, Brian K | Trends in pharmacological sciences. | 22503476 | 2012 May; |
| Using ontology-based annotation to profile disease research. | Liu, Yi; Coulet, Adrien; LePendu, Paea; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 22494789 | 2012 Jun |
| Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. | Wu, Stephen T; Liu, Hongfang; Li, Dingcheng; Tao, Cui; Musen, Mark A; Chute, Christopher G; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 22493050 | 2012 Jun |
| A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support. | Jiang, Xiaoqian; Boxwala, Aziz A; El-Kareh, Robert; Kim, Jihoon; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 22493049 | 2012 Jun 1 |
| Metab2MeSH: annotating compounds with medical subject headings. | Sartor, Maureen A; Ade, Alex; Wright, Zach; States, David; Omenn, Gilbert S; Athey, Brian; Karnovsky, Alla | Bioinformatics (Oxford, England) | 22492643 | 2012 May 15 |
| Sex matters during adolescence: testosterone-related cortical thickness maturation differs between boys and girls. | Bramen, Jennifer E; Hranilovich, Jennifer A; Dahl, Ronald E; Chen, Jessie; Rosso, Carly; Forbes, Erika E; Dinov, Ivo D; Worthman, Carol M; Sowell, Elizabeth R | PloS one | 22479458 | 2012 |
| A mega-analysis of genome-wide association studies for major depressive disorder. | Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium; Ripke, Stephan; Wray, Naomi R; Lewis, Cathryn M; Hamilton, Steven P; Weissman, Myrna M; Breen, Gerome; Byrne, Enda M; Blackwood, Douglas H R; Boomsma, Dorret I; Cichon, Sven; Heat | Molecular psychiatry | 22472876 | 2013 Apr |
| Frontostriatal connectivity in children during working memory and the effects of prenatal methamphetamine, alcohol, and polydrug exposure. | Roussotte, Florence F; Rudie, Jeffrey D; Smith, Lynne; O'Connor, Mary J; Bookheimer, Susan Y; Narr, Katherine L; Sowell, Elizabeth R | Developmental neuroscience | 22472800 | 2012 |
| A platform for dynamic simulation and control of movement based on OpenSim and MATLAB. | Mansouri, Misagh; Reinbolt, Jeffrey A | Journal of biomechanics | 22464351 | 2012 May 11 |
| TLS/FUS (translocated in liposarcoma/fused in sarcoma) regulates target gene transcription via single-stranded DNA response elements. | Tan, Adelene Y; Riley, Todd R; Coady, Tristan; Bussemaker, Harmen J; Manley, James L | Proceedings of the National Academy of Sciences of the United States of America | 22460799 | 2012 Apr 17 |
| Lexical patterns, features and knowledge resources for coreference resolution in clinical notes. | Gooch, Phil; Roudsari, Abdul | Journal of biomedical informatics | 22449720 | 2012 Oct |
| Inference of modules associated to eQTLs. | Kreimer, Anat; Litvin, Oren; Hao, Ke; Molony, Cliona; Pe'er, Dana; Pe'er, Itsik | Nucleic acids research | 22447449 | 2012 Jul |
| Genome-wide functional annotation of dual-specificity protein- and lipid-binding modules that regulate protein interactions. | Chen, Yong; Sheng, Ren; Kallberg, Morten; Silkov, Antonina; Tun, Moe P; Bhardwaj, Nitin; Kurilova, Svetlana; Hall, Randy A; Honig, Barry; Lu, Hui; Cho, Wonhwa | Molecular cell | 22445486 | 2012 Apr 27 |
| Prenatal isolated mild ventriculomegaly is associated with persistent ventricle enlargement at ages 1 and 2. | Lyall, Amanda E; Woolson, Sandra; Wolfe, Honor M; Goldman, Barbara Davis; Reznick, J Steven; Hamer, Robert M; Lin, Weili; Styner, Martin; Gerig, Guido; Gilmore, John H | Early human development | 22445211 | 2012 Aug |
| The right inhibition? Callosal correlates of hand performance in healthy children and adolescents callosal correlates of hand performance. | Kurth, Florian; Mayer, Emeran A; Toga, Arthur W; Thompson, Paul M; Luders, Eileen | Human brain mapping | 22438280 | 2013 Sep |
| A review of magnetic resonance imaging and diffusion tensor imaging findings in mild traumatic brain injury. | Shenton, M E; Hamoda, H M; Schneiderman, J S; Bouix, S; Pasternak, O; Rathi, Y; Vu, M-A; Purohit, M P; Helmer, K; Koerte, I; Lin, A P; Westin, C-F; Kikinis, R; Kubicki, M; Stern, R A; Zafonte, R | Brain imaging and behavior. | 22438191 | 2012 Jun; |
| Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4. | Mysinger, Michael M; Weiss, Dahlia R; Ziarek, Joshua J; Gravel, Stephanie; Doak, Allison K; Karpiak, Joel; Heveker, Nikolaus; Shoichet, Brian K; Volkman, Brian F | Proceedings of the National Academy of Sciences of the United States of America | 22431600 | 2012 Apr 3 |
| Sentiment Analysis of Suicide Notes: A Shared Task. | Pestian, John P; Matykiewicz, Pawel; Linn-Gust, Michelle; South, Brett; Uzuner, Ozlem; Wiebe, Jan; Cohen, K Bretonnel; Hurdle, John; Brew, Christopher | Biomedical informatics insights. | 22419877 | 2012 Jan 30; |
| MCORES: a system for noun phrase coreference resolution for clinical records. | Bodnari, Andreea; Szolovits, Peter; Uzuner, Ozlem | Journal of the American Medical Informatics Association : JAMIA | 22419739 | 2012 Sep-Oct |
| Right, left, and center: how does cerebral asymmetry mix with callosal connectivity? | Cherbuin, Nicolas; Luders, Eileen; Chou, Yi-Yu; Thompson, Paul M; Toga, Arthur W; Anstey, Kaarin J | Human brain mapping | 22419524 | 2013 Jul |
| Anterior limb of the internal capsule in schizophrenia: a diffusion tensor tractography study. | Rosenberger, Gudrun; Nestor, Paul G; Oh, Jungsu S; Levitt, James J; Kindleman, Gordon; Bouix, Sylvain; Fitzsimmons, Jennifer; Niznikiewicz, Margaret; Westin, Carl-Fredrik; Kikinis, Ron; McCarley, Robert W; Shenton, Martha E; Kubicki, Marek | Brain imaging and behavior | 22415192 | 2012 Sep |
| Hippocampal shape analysis in Alzheimer's disease and frontotemporal lobar degeneration subtypes. | Lindberg, Olof; Walterfang, Mark; Looi, Jeffrey C L; Malykhin, Nikolai; Ostberg, Per; Zandbelt, Bram; Styner, Martin; Paniagua, Beatriz; Velakoulis, Dennis; Orndahl, Eva; Wahlund, Lars-Olof | Journal of Alzheimer's disease : JAD | 22414571 | 2012 |
| Where to Publish and Find Ontologies? A Survey of Ontology Libraries. | d'Aquin, Mathieu; Noy, Natalya F | Web semantics (Online) | 22408576 | 2012 Mar 1 |
| White matter integrity, language, and childhood onset schizophrenia. | Clark, Kristi; Narr, Katherine L; O'Neill, Joseph; Levitt, Jennifer; Siddarth, Prabha; Phillips, Owen; Toga, Arthur; Caplan, Rochelle | Schizophrenia research | 22405729 | 2012 Jul |
| Analytic regularization for landmark-based image registration. | Shusharina, Nadezhda; Sharp, Gregory | Physics in medicine and biology | 22390947 | 2012 Mar 21 |
| How robust is human gait to muscle weakness? | van der Krogt, Marjolein M; Delp, Scott L; Schwartz, Michael H | Gait & posture | 22386624 | 2012 May |
| Bayesian lasso for semiparametric structural equation models. | Guo, Ruixin; Zhu, Hongtu; Chow, Sy-Miin; Ibrahim, Joseph G | Biometrics | 22376150 | 2012 Jun |
| Portability of an algorithm to identify rheumatoid arthritis in electronic health records. | Carroll, Robert J; Thompson, Will K; Eyler, Anne E; Mandelin, Arthur M; Cai, Tianxi; Zink, Raquel M; Pacheco, Jennifer A; Boomershine, Chad S; Lasko, Thomas A; Xu, Hua; Karlson, Elizabeth W; Perez, Raul G; Gainer, Vivian S; Murphy, Shawn N; Ruderman, Eric | Journal of the American Medical Informatics Association : JAMIA | 22374935 | 2012 Jun |
| Integration of the OpenIGTLink network protocol for image-guided therapy with the medical platform MeVisLab. | Egger, Jan; Tokuda, Junichi; Chauvin, Laurent; Freisleben, Bernd; Nimsky, Christopher; Kapur, Tina; Wells, William | The international journal of medical robotics + computer assisted surgery : MRCAS | 22374845 | 2012 Sep |
| Self-crossing detection and location for parametric active contours. | Nakhmani, Arie; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 22374361 | 2012 Jul |
| Size and shape of the caudate nucleus in individuals with bipolar affective disorder. | Ong, Daniel; Walterfang, Mark; Malhi, Gin S; Styner, Martin; Velakoulis, Dennis; Pantelis, Christos | The Australian and New Zealand journal of psychiatry | 22368240 | 2012 Apr |
| Evaluating the state of the art in coreference resolution for electronic medical records. | Uzuner, Ozlem; Bodnari, Andreea; Shen, Shuying; Forbush, Tyler; Pestian, John; South, Brett R | Journal of the American Medical Informatics Association : JAMIA | 22366294 | 2012 Sep-Oct |
| Square-cut: a segmentation algorithm on the basis of a rectangle shape. | Egger, Jan; Kapur, Tina; Dukatz, Thomas; Kolodziej, Malgorzata; Zukic, Dzenan; Freisleben, Bernd; Nimsky, Christopher | PloS one | 22363547 | 2012 |
| Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury. | Irimia, Andrei; Chambers, Micah C; Torgerson, Carinna M; Filippou, Maria; Hovda, David A; Alger, Jeffry R; Gerig, Guido; Toga, Arthur W; Vespa, Paul M; Kikinis, Ron; Van Horn, John D | Frontiers in neurology. | 22363313 | 2012; |
| Differences in white matter fiber tract development present from 6 to 24 months in infants with autism. | Wolff, Jason J; Gu, Hongbin; Gerig, Guido; Elison, Jed T; Styner, Martin; Gouttard, Sylvain; Botteron, Kelly N; Dager, Stephen R; Dawson, Geraldine; Estes, Annette M; Evans, Alan C; Hazlett, Heather C; Kostopoulos, Penelope; McKinstry, Robert C; Paterson, | The American journal of psychiatry | 22362397 | 2012 Jun |
| Predictors of severe outcomes associated with Clostridium difficile infection in patients with inflammatory bowel disease. | Ananthakrishnan, A N; Guzman-Perez, R; Gainer, V; Cai, T; Churchill, S; Kohane, I; Plenge, R M; Murphy, S | Alimentary pharmacology & therapeutics | 22360370 | 2012 Apr |
| In search of the functional neuroanatomy of sociality: MRI subdivisions of orbital frontal cortex and social cognition. | Nestor, Paul G; Nakamura, Motoaki; Niznikiewicz, Margaret; Thompson, Elizabeth; Levitt, James J; Choate, Victoria; Shenton, Martha E; McCarley, Robert W | Social cognitive and affective neuroscience | 22345366 | 2013 Apr |
| Hippocampal atrophy and ventricular enlargement in normal aging, mild cognitive impairment (MCI), and Alzheimer Disease. | Apostolova, Liana G; Green, Amity E; Babakchanian, Sona; Hwang, Kristy S; Chou, Yi-Yu; Toga, Arthur W; Thompson, Paul M | Alzheimer disease and associated disorders | 22343374 | 2012 Jan |
| Viral reassortment as an information exchange between viral segments. | Greenbaum, Benjamin D; Li, Olive T W; Poon, Leo L M; Levine, Arnold J; Rabadan, Raul | Proceedings of the National Academy of Sciences of the United States of America | 22331898 | 2012 Feb 28 |
| FAST EDGE-FILTERED IMAGE UPSAMPLING. | Joshi, Shantanu H; Marquina, Antonio L; Osher, Stanley J; Dinov, Ivo; Toga, Arthur W; Van Horn, John D | Proceedings. International Conference on Image Processing. | 22323066 | 2011 Sep 14; |
| Quantitative modeling of the terminal differentiation of B cells and mechanisms of lymphomagenesis. | Martinez, Maria Rodriguez; Corradin, Alberto; Klein, Ulf; Alvarez, Mariano Javier; Toffolo, Gianna M; di Camillo, Barbara; Califano, Andrea; Stolovitzky, Gustavo A | Proceedings of the National Academy of Sciences of the United States of America | 22308355 | 2012 Feb 14 |
| Circular representation of human cortical networks for subject and population-level connectomic visualization. | Irimia, Andrei; Chambers, Micah C; Torgerson, Carinna M; Horn, John D Van | NeuroImage | 22305988 | 2012 Apr 2 |
| A system for coreference resolution for the clinical narrative. | Zheng, Jiaping; Chapman, Wendy W; Miller, Timothy A; Lin, Chen; Crowley, Rebecca S; Savova, Guergana K | Journal of the American Medical Informatics Association : JAMIA | 22298565 | 2012 Jul-Aug |
| Ratcheting up cancer potency estimates. | Crouch, Edmund A C; Omenn, Gilbert S | Environmental science & technology | 22296526 | 2012 Mar 6 |
| On the covariate-adjusted estimation for an overall treatment difference with data from a randomized comparative clinical trial. | Tian, Lu; Cai, Tianxi; Zhao, Lihui; Wei, Lee-Jen | Biostatistics (Oxford, England) | 22294672 | 2012 Apr |
| Single sample expression-anchored mechanisms predict survival in head and neck cancer. | Yang, Xinan; Regan, Kelly; Huang, Yong; Zhang, Qingbei; Li, Jianrong; Seiwert, Tanguy Y; Cohen, Ezra E W; Xing, H Rosie; Lussier, Yves A | PLoS computational biology | 22291585 | 2012 Jan |
| TwinMARM: two-stage multiscale adaptive regression methods for twin neuroimaging data. | Li, Yimei; Gilmore, John H; Wang, Jiaping; Styner, Martin; Lin, Weili; Zhu, Hongtu | IEEE transactions on medical imaging | 22287236 | 2012 May |
| Developing predictive molecular maps of human disease through community-based modeling. | Derry, Jonathan M J; Mangravite, Lara M; Suver, Christine; Furia, Matthew D; Henderson, David; Schildwachter, Xavier; Bot, Brian; Izant, Jonathan; Sieberts, Solveig K; Kellen, Michael R; Friend, Stephen H | Nature genetics | 22281773 | 2012 Feb |
| Diffusion tensor imaging-based characterization of brain neurodevelopment in primates. | Shi, Yundi; Short, Sarah J; Knickmeyer, Rebecca C; Wang, Jiaping; Coe, Christopher L; Niethammer, Marc; Gilmore, John H; Zhu, Hongtu; Styner, Martin A | Cerebral cortex (New York, N.Y. : 1991) | 22275483 | 2013 Jan |
| Classification of astrocytomas and oligodendrogliomas from mass spectrometry data using sparse kernel machines. | Huang, Jacob; Gholami, Behnood; Agar, Nathalie Y R; Norton, Isaiah; Haddad, Wassim M; Tannenbaum, Allen R | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 22256188 | 2011 |
| 3D Slicer as a tool for interactive brain tumor segmentation. | Kikinis, Ron; Pieper, Steve | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 22255945 | 2011 |
| A compressive sensing approach for glioma margin delineation using mass spectrometry. | Gholami, Behnood; Agar, Nathalie Y R; Jolesz, Ferenc A; Haddad, Wassim M; Tannenbaum, Allen R | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 22255629 | 2011 |
| Ranking of stopping criteria for log domain diffeomorphic demons application in clinical radiation therapy. | Peroni, M; Golland, P; Sharp, G C; Baroni, G | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 22255433 | 2011 |
| Ballistocardiography--a method worth revisiting. | Giovangrandi, Laurent; Inan, Omer T; Wiard, Richard M; Etemadi, Mozziyar; Kovacs, Gregory T A | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 22255285 | 2011 |
| Genetic interactions between chromosomes 11 and 18 contribute to airway hyperresponsiveness in mice. | Ferreira, Caroline M; Chen, James L; Li, Jianrong; Shimomura, Kazuhiro; Yang, Xinan; Lussier, Yves A; Pinto, Lawrence H; Solway, Julian | PloS one | 22253740 | 2012 |
| Atlas-guided segmentation of vervet monkey brain MRI. | Fedorov, Andriy; Li, Xiaoxing; Pohl, Kilian M; Bouix, Sylvain; Styner, Martin; Addicott, Merideth; Wyatt, Chris; Daunais, James B; Wells, William M; Kikinis, Ron | The open neuroimaging journal. | 22253661 | 2011; |
| FreeSurfer. | Fischl, Bruce | NeuroImage. | 22248573 | 2012 Aug 15; |
| Reverse-engineering human regulatory networks. | Lefebvre, Celine; Rieckhof, Gabrielle; Califano, Andrea | Wiley interdisciplinary reviews. Systems biology and medicine | 22246697 | 2012 Jul-Aug |
| Disease and genetic contributions toward local tissue volume disturbances in schizophrenia: a tensor-based morphometry study. | Yang, Yaling; Nuechterlein, Keith H; Phillips, Owen R; Gutman, Boris; Kurth, Florian; Dinov, Ivo; Thompson, Paul M; Asarnow, Robert F; Toga, Arthur W; Narr, Katherine L | Human brain mapping | 22241649 | 2012 Sep |
| Clinical application of pharmacokinetic analysis as a biomarker of solitary pulmonary nodules: dynamic contrast-enhanced MR imaging. | Mamata, Hatsuho; Tokuda, Junichi; Gill, Ritu R; Padera, Robert F; Lenkinski, Robert E; Sugarbaker, David J; Butler, James P; Hatabu, Hiroto | Magnetic resonance in medicine. | 22231729 | 2012 Nov; |
| How to measure cortical folding from MR images: a step-by-step tutorial to compute local gyrification index. | Schaer, Marie; Cuadra, Meritxell Bach; Schmansky, Nick; Fischl, Bruce; Thiran, Jean-Philippe; Eliez, Stephan | Journal of visualized experiments : JoVE | 22230945 | 2012 |
| On the biomechanics and mechanobiology of growing skin. | Zollner, Alexander M; Buganza Tepole, Adrian; Kuhl, Ellen | Journal of theoretical biology | 22227432 | 2012 Mar 21 |
| Stabilisation of walking by intrinsic muscle properties revealed in a three-dimensional muscle-driven simulation. | John, Chand T; Anderson, Frank C; Higginson, Jill S; Delp, Scott L | Computer methods in biomechanics and biomedical engineering | 22224406 | 2013 Apr |
| Technical desiderata for the integration of genomic data into Electronic Health Records. | Masys, Daniel R; Jarvik, Gail P; Abernethy, Neil F; Anderson, Nicholas R; Papanicolaou, George J; Paltoo, Dina N; Hoffman, Mark A; Kohane, Isaac S; Levy, Howard P | Journal of biomedical informatics | 22223081 | 2012 Jun |
| Using multiple microenvironments to find similar ligand-binding sites: application to kinase inhibitor binding. | Liu, Tianyun; Altman, Russ B | PLoS computational biology | 22219723 | 2011 Dec |
| Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. | Kohane, Isaac S; Valtchinov, Vladimir I | Bioinformatics (Oxford, England). | 22219206 | 2012 Feb 15; |
| Spatio-temporal Structure of US Critical Care Transfer Network. | Unnikrishnan, K P; Patnaik, Debprakash; Iwashyna, Theodore J | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 22211183 | 2011; |
| CNTRO 2.0: A Harmonized Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. | Tao, Cui; Solbrig, Harold R; Chute, Christopher G | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 22211182 | 2011; |
| Towards Semantic-Web Based Representation and Harmonization of Standard Meta-data Models for Clinical Studies. | Tao, Cui; Jiang, Guoqian; Wei, Weiqi; Solbrig, Harold R; Chute, Christopher G | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 22211181 | 2011; |
| Smooth isotonic regression: a new method to calibrate predictive models. | Jiang, Xiaoqian; Osl, Melanie; Kim, Jihoon; Ohno-Machado, Lucila | AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science | 22211175 | 2011 |
| An approach to improve LOINC mapping through augmentation of local test names. | Kim, Hyeoneui; El-Kareh, Robert; Goel, Anupam; Vineet, F N U; Chapman, Wendy W | Journal of biomedical informatics | 22210167 | 2012 Aug |
| Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes. | Bray, Jenelle K; Weiss, Dahlia R; Levitt, Michael | Biophysical journal | 22208195 | 2011 Dec 21 |
| Compressive tibiofemoral force during crouch gait. | Steele, Katherine M; Demers, Matthew S; Schwartz, Michael H; Delp, Scott L | Gait & posture | 22206783 | 2012 Apr |
| Anatomic brain asymmetry in vervet monkeys. | Fears, Scott C; Scheibel, Kevin; Abaryan, Zvart; Lee, Chris; Service, Susan K; Jorgensen, Matthew J; Fairbanks, Lynn A; Cantor, Rita M; Freimer, Nelson B; Woods, Roger P | PloS one | 22205941 | 2011 |
| Qualitative analysis of workflow modifications used to generate the reference standard for the 2010 i2b2/VA challenge. | South, Brett R; Shen, Shuying; Barrus, Robyn; DuVall, Scott L; Uzuner, Ozlem; Weir, Charlene | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 22195185 | 2011 |
| The effect of reference panels and software tools on genotype imputation. | Nho, Kwangsik; Shen, Li; Kim, Sungeun; Swaminathan, Shanker; Risacher, Shannon L; Saykin, Andrew J; Alzheimerýýýs Disease Neuroimaging Initiative (ADNI) | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 22195161 | 2011 |
| Anomaly and signature filtering improve classifier performance for detection of suspicious access to EHRs. | Kim, Jihoon; Grillo, Janice M; Boxwala, Aziz A; Jiang, Xiaoqian; Mandelbaum, Rose B; Patel, Bhakti A; Mikels, Debra; Vinterbo, Staal A; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 22195129 | 2011 |
| Improving predictions in imbalanced data using Pairwise Expanded Logistic Regression. | Jiang, Xiaoqian; El-Kareh, Robert; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 22195118 | 2011 |
| Part-of-speech tagging for clinical text: wall or bridge between institutions? | Fan, Jung-wei; Prasad, Rashmi; Yabut, Rommel M; Loomis, Richard M; Zisook, Daniel S; Mattison, John E; Huang, Yang | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 22195091 | 2011 |
| A cloud-based approach to medical NLP. | Chard, Kyle; Russell, Michael; Lussier, Yves A; Mendonca, Eneida A; Silverstein, Jonathan C | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 22195072 | 2011 |
| Registration of images with varying topology using embedded maps. | Li, Xiaoxing; Long, Xiaojing; Laurienti, Paul; Wyatt, Christopher; Alzheimerýýýs Disease Neuroimaging Initiative | IEEE transactions on medical imaging | 22194239 | 2012 Mar |
| Trends in biomedical informatics: most cited topics from recent years. | Kim, Hyeon-Eui; Jiang, Xiaoqian; Kim, Jihoon; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 22180873 | 2011 Dec |
| Neurological imaging: statistics behind the pictures. | Dinov, Ivo D | Imaging in medicine | 22180753 | 2011 Aug 1 |
| U-Compare bio-event meta-service: compatible BioNLP event extraction services. | Kano, Yoshinobu; Bjorne, Jari; Ginter, Filip; Salakoski, Tapio; Buyko, Ekaterina; Hahn, Udo; Cohen, K Bretonnel; Verspoor, Karin; Roeder, Christophe; Hunter, Lawrence E; Kilicoglu, Halil; Bergler, Sabine; Van Landeghem, Sofie; Van Parys, Thomas; Van de Pe | BMC bioinformatics | 22177292 | 2011 |
| MicroRNA expression characterizes oligometastasis(es). | Lussier, Yves A; Xing, H Rosie; Salama, Joseph K; Khodarev, Nikolai N; Huang, Yong; Zhang, Qingbei; Khan, Sajid A; Yang, Xinan; Hasselle, Michael D; Darga, Thomas E; Malik, Renuka; Fan, Hanli; Perakis, Samantha; Filippo, Matthew; Corbin, Kimberly; Lee, Yo | PloS one | 22174856 | 2011 |
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| The NIH National Center for Integrative Biomedical Informatics (NCIBI). | Athey, Brian D; Cavalcoli, James D; Jagadish, H V; Omenn, Gilbert S; Mirel, Barbara; Kretzler, Matthias; Burant, Charles; Isokpehi, Raphael D; DeLisi, Charles; NCIBI faculty, trainees, and staff | Journal of the American Medical Informatics Association : JAMIA | 22101971 | 2012 Mar-Apr |
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| 3D quantification of mandibular asymmetry using the SPHARM-PDM tool box. | Alhadidi, Abeer; Cevidanes, Lucia H; Paniagua, Beatriz; Cook, Richard; Festy, Frederic; Tyndall, Donald | International journal of computer assisted radiology and surgery. | 22089896 | 2012 Mar; |
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| Using systems and structure biology tools to dissect cellular phenotypes. | Floratos, Aris; Honig, Barry; Pe'er, Dana; Califano, Andrea | Journal of the American Medical Informatics Association : JAMIA | 22081223 | 2012 Mar-Apr |
| Simbios: an NIH national center for physics-based simulation of biological structures. | Delp, Scott L; Ku, Joy P; Pande, Vijay S; Sherman, Michael A; Altman, Russ B | Journal of the American Medical Informatics Association : JAMIA | 22081222 | 2012 Mar-Apr |
| The Center for Computational Biology: resources, achievements, and challenges. | Toga, Arthur W; Dinov, Ivo D; Thompson, Paul M; Woods, Roger P; Van Horn, John D; Shattuck, David W; Parker, D Stott | Journal of the American Medical Informatics Association : JAMIA | 22081221 | 2012 Mar-Apr |
| The National Center for Biomedical Ontology. | Musen, Mark A; Noy, Natalya F; Shah, Nigam H; Whetzel, Patricia L; Chute, Christopher G; Story, Margaret-Anne; Smith, Barry; NCBO team | Journal of the American Medical Informatics Association : JAMIA | 22081220 | 2012 Mar-Apr |
| The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis. | Kapur, Tina; Pieper, Steve; Whitaker, Ross; Aylward, Stephen; Jakab, Marianna; Schroeder, Will; Kikinis, Ron | Journal of the American Medical Informatics Association : JAMIA | 22081219 | 2012 Mar-Apr |
| Replication and meta-analysis of the gene-environment interaction between body mass index and the interleukin-6 promoter polymorphism with higher insulin resistance. | Underwood, Patricia C; Chamarthi, Bindu; Williams, Jonathan S; Sun, Bei; Vaidya, Anand; Raby, Benjamin A; Lasky-Su, Jessica; Hopkins, Paul N; Adler, Gail K; Williams, Gordon H | Metabolism: clinical and experimental | 22075267 | 2012 May |
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| Functional implications of structural predictions for alternative splice proteins expressed in Her2/neu-induced breast cancers. | Menon, Rajasree; Roy, Ambrish; Mukherjee, Srayanta; Belkin, Saveliy; Zhang, Yang; Omenn, Gilbert S | Journal of proteome research | 22003824 | 2011 Dec 2 |
| Segmentation of nerve bundles and ganglia in spine MRI using particle filters. | Dalca, Adrian; Danagoulian, Giovanna; Kikinis, Ron; Schmidt, Ehud; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 22003741 | 2011 |
| An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. | Sumazin, Pavel; Yang, Xuerui; Chiu, Hua-Sheng; Chung, Wei-Jen; Iyer, Archana; Llobet-Navas, David; Rajbhandari, Presha; Bansal, Mukesh; Guarnieri, Paolo; Silva, Jose; Califano, Andrea | Cell | 22000015 | 2011 Oct 14 |
| Geometric metamorphosis. | Niethammer, Marc; Hart, Gabriel L; Pace, Danielle F; Vespa, Paul M; Irimia, Andrei; Van Horn, John D; Aylward, Stephen R | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 21995083 | 2011 |
| Fast shape-based nearest-neighbor search for brain MRIs using hierarchical feature matching. | Zhu, Peihong; Awate, Suyash P; Gerber, Samuel; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 21995064 | 2011 |
| Iterative refinement of point correspondences for 3D statistical shape models. | Seshamani, Sharmishtaa; Chintalapani, Gouthami; Taylor, Russell | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 21995056 | 2011 |
| Estimation of smooth growth trajectories with controlled acceleration from time series shape data. | Fishbaugh, James; Durrleman, Stanley; Gerig, Guido | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 21995054 | 2011 |
| Geometric correspondence for ensembles of nonregular shapes. | Datar, Manasi; Gur, Yaniv; Paniagua, Beatriz; Styner, Martin; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 21995050 | 2011 |
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| A hidden Markov model for copy number variant prediction from whole genome resequencing data. | Shen, Yufeng; Gu, Yiwei; Pe'er, Itsik | BMC bioinformatics | 21989326 | 2011 |
| Strategies for maintaining patient privacy in i2b2. | Murphy, Shawn N; Gainer, Vivian; Mendis, Michael; Churchill, Susanne; Kohane, Isaac | Journal of the American Medical Informatics Association : JAMIA | 21984588 | 2011 Dec |
| Calibrating predictive model estimates to support personalized medicine. | Jiang, Xiaoqian; Osl, Melanie; Kim, Jihoon; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 21984587 | 2012 Mar-Apr; |
| The architecture of long-range haplotypes shared within and across populations. | Gusev, Alexander; Palamara, Pier Francesco; Aponte, Gregory; Zhuang, Zhong; Darvasi, Ariel; Gregersen, Peter; Pe'er, Itsik | Molecular biology and evolution | 21984068 | 2012 Feb |
| A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA. | Bishop, Eric P; Rohs, Remo; Parker, Stephen C J; West, Sean M; Liu, Peng; Mann, Richard S; Honig, Barry; Tullius, Thomas D | ACS chemical biology | 21967305 | 2011 Dec 16 |
| Empowering industrial research with shared biomedical vocabularies. | Harland, Lee; Larminie, Christopher; Sansone, Susanna-Assunta; Popa, Sorana; Marshall, M Scott; Braxenthaler, Michael; Cantor, Michael; Filsell, Wendy; Forster, Mark J; Huang, Enoch; Matern, Andreas; Musen, Mark; Saric, Jasmin; Slater, Ted; Wilson, Jabe; Lynch, Nick; Wise, John; Dix, Ian | Drug discovery today. | 21963522 | 2011 Nov; |
| Source cancellation profiles of electroencephalography and magnetoencephalography. | Irimia, Andrei; Van Horn, John Darrell; Halgren, Eric | NeuroImage | 21959078 | 2012 Feb 1 |
| Cortical and hippocampal atrophy in patients with autosomal dominant familial Alzheimer's disease. | Apostolova, Liana G; Hwang, Kristy S; Medina, Luis D; Green, Amity E; Braskie, Meredith N; Dutton, Rebecca A; Lai, Jeffrey; Geschwind, Daniel H; Cummings, Jeffrey L; Thompson, Paul M; Ringman, John M | Dementia and geriatric cognitive disorders | 21952501 | 2011 |
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| Efficient Probabilistic and Geometric Anatomical Mapping Using Particle Mesh Approximation on GPUs. | Ha, Linh; Prastawa, Marcel; Gerig, Guido; Gilmore, John H; Silva, Claudio T; Joshi, Sarang | International journal of biomedical imaging | 21941523 | 2011 |
| Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM. | Styner, Martin; Oguz, Ipek; Xu, Shun; Brechbuhler, Christian; Pantazis, Dimitrios; Levitt, James J; Shenton, Martha E; Gerig, Guido | The insight journal | 21941375 | 2006 |
| The representation of protein complexes in the Protein Ontology (PRO). | Bult, Carol J; Drabkin, Harold J; Evsikov, Alexei; Natale, Darren; Arighi, Cecilia; Roberts, Natalia; Ruttenberg, Alan; D'Eustachio, Peter; Smith, Barry; Blake, Judith A; Wu, Cathy | BMC bioinformatics. | 21929785 | 2011 Sep 19; |
| The identification of gene expression profiles associated with progression of human diabetic neuropathy. | Hur, Junguk; Sullivan, Kelli A; Pande, Manjusha; Hong, Yu; Sima, Anders A F; Jagadish, Hosagrahar V; Kretzler, Matthias; Feldman, Eva L | Brain : a journal of neurology | 21926103 | 2011 Nov |
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| NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources. | Jonquet, Clement; Lependu, Paea; Falconer, Sean; Coulet, Adrien; Noy, Natalya F; Musen, Mark A; Shah, Nigam H | Web semantics (Online) | 21918645 | 2011 Sep 1 |
| Morphometric analysis of subcortical structures in progressive supranuclear palsy: In vivo evidence of neostriatal and mesencephalic atrophy. | Looi, Jeffrey C L; Macfarlane, Matthew D; Walterfang, Mark; Styner, Martin; Velakoulis, Dennis; Latt, Jimmy; van Westen, Danielle; Nilsson, Christer | Psychiatry research | 21899988 | 2011 Nov 30 |
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| CYP4A11 T8590C polymorphism, salt-sensitive hypertension, and renal blood flow. | Williams, Jonathan S; Hopkins, Paul N; Jeunemaitre, Xavier; Brown, Nancy J | Journal of hypertension | 21873888 | 2011 Oct |
| Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network. | Hur, Junguk; Xiang, Zuoshuang; Feldman, Eva L; He, Yongqun | BMC immunology | 21871085 | 2011 |
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| Differential effects of the Huntington's disease CAG mutation in striatum and cerebellum are quantitative not qualitative. | Fossale, Elisa; Seong, Ihn Sik; Coser, Kathryn R; Shioda, Toshi; Kohane, Isaac S; Wheeler, Vanessa C; Gusella, James F; MacDonald, Marcy E; Lee, Jong-Min | Human molecular genetics | 21840924 | 2011 Nov 1 |
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| Comparison of two methods for quantitative assessment of mandibular asymmetry using cone beam computed tomography image volumes. | AlHadidi, Abeer; Cevidanes, L H S; Mol, A; Ludlow, J; Styner, M | Dento maxillo facial radiology. | 21831974 | 2011 Sep; |
| Fiber geometry in the corpus callosum in schizophrenia: evidence for transcallosal misconnection. | Whitford, Thomas J; Savadjiev, Peter; Kubicki, Marek; O'Donnell, Lauren J; Terry, Douglas P; Bouix, Sylvain; Westin, Carl-Fredrik; Schneiderman, Jason S; Bobrow, Laurel; Rausch, Andrew C; Niznikiewicz, Margaret; Nestor, Paul G; Pantelis, Christos; Wood, S | Schizophrenia research | 21831601 | 2011 Oct |
| Superimposition of 3D cone-beam CT models in orthognathic surgery. | da Motta, Alexandre Trindade Simoes; de Assis Ribeiro Carvalho, Felipe; Oliveira, Ana Emilia Figueiredo; Cevidanes, Lucia Helena Soares; de Oliveira Almeida, Marco Antonio | Dental press journal of orthodontics. | 21814624 | 2010 Mar 1; |
| Patients with patellofemoral pain exhibit elevated bone metabolic activity at the patellofemoral joint. | Draper, Christine E; Fredericson, Michael; Gold, Garry E; Besier, Thor F; Delp, Scott L; Beaupre, Gary S; Quon, Andrew | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 21812024 | 2012 Feb |
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| Analysis of the coding genome of diffuse large B-cell lymphoma. | Pasqualucci, Laura; Trifonov, Vladimir; Fabbri, Giulia; Ma, Jing; Rossi, Davide; Chiarenza, Annalisa; Wells, Victoria A; Grunn, Adina; Messina, Monica; Elliot, Oliver; Chan, Joseph; Bhagat, Govind; Chadburn, Amy; Gaidano, Gianluca; Mullighan, Charles G; R | Nature genetics | 21804550 | 2011 Sep |
| Applications of the pipeline environment for visual informatics and genomics computations. | Dinov, Ivo D; Torri, Federica; Macciardi, Fabio; Petrosyan, Petros; Liu, Zhizhong; Zamanyan, Alen; Eggert, Paul; Pierce, Jonathan; Genco, Alex; Knowles, James A; Clark, Andrew P; Van Horn, John D; Ames, Joseph; Kesselman, Carl; Toga, Arthur W | BMC bioinformatics | 21791102 | 2011 |
| Comparison of acute and chronic traumatic brain injury using semi-automatic multimodal segmentation of MR volumes. | Irimia, Andrei; Chambers, Micah C; Alger, Jeffry R; Filippou, Maria; Prastawa, Marcel W; Wang, Bo; Hovda, David A; Gerig, Guido; Toga, Arthur W; Kikinis, Ron; Vespa, Paul M; Van Horn, John D | Journal of neurotrauma | 21787171 | 2011 Nov |
| Deformable Image Registration of Sliding Organs Using Anisotropic Diffusive Regularization. | Pace, Danielle F; Enquobahrie, Andinet; Yang, Hua; Aylward, Stephen R; Niethammer, Marc | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 21785755 | 2011 Mar 30 |
| Fast flexible modeling of RNA structure using internal coordinates. | Flores, Samuel Coulbourn; Sherman, Michael A; Bruns, Christopher M; Eastman, Peter; Altman, Russ Biagio | IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM | 21778523 | 2011 Sep-Oct |
| Quantitative comparison of villin headpiece subdomain simulations and triplet-triplet energy transfer experiments. | Beauchamp, Kyle A; Ensign, Daniel L; Das, Rhiju; Pande, Vijay S | Proceedings of the National Academy of Sciences of the United States of America | 21768345 | 2011 Aug 2 |
| A generative approach for image-based modeling of tumor growth. | Menze, Bjoern H; Van Leemput, Koen; Honkela, Antti; Konukoglu, Ender; Weber, Marc-Andre; Ayache, Nicholas; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference | 21761700 | 2011 |
| White matter bundle registration and population analysis based on Gaussian processes. | Wassermann, Demian; Rathi, Yogesh; Bouix, Sylvain; Kubicki, Marek; Kikinis, Ron; Shenton, Martha; Westin, Carl-Fredrik | Information processing in medical imaging : proceedings of the ... conference | 21761667 | 2011 |
| Learning an atlas of a cognitive process in its functional geometry. | Langs, Georg; Lashkari, Danial; Sweet, Andrew; Tie, Yanmei; Rigolo, Laura; Golby, Alexandra J; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference | 21761652 | 2011 |
| Optimal data-driven sparse parameterization of diffeomorphisms for population analysis. | Durrleman, Sandy; Prastawa, Marcel; Gerig, Guido; Joshi, Sarang | Information processing in medical imaging : proceedings of the ... conference | 21761651 | 2011 |
| Adaptive Riemannian metrics for improved geodesic tracking of white matter. | Hao, Xiang; Whitaker, Ross T; Fletcher, P Thomas | Information processing in medical imaging : proceedings of the ... conference | 21761642 | 2011 |
| Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing. | Quinn, T A; Granite, S; Allessie, M A; Antzelevitch, C; Bollensdorff, C; Bub, G; Burton, R A B; Cerbai, E; Chen, P S; Delmar, M; Difrancesco, D; Earm, Y E; Efimov, I R; Egger, M; Entcheva, E; Fink, M; Fischmeister, R; Franz, M R; Garny, A; Giles, W R; Han | Progress in biophysics and molecular biology | 21745496 | 2011 Oct |
| BRAIN PATTERN ANALYSIS OF CORTICAL VALUED DISTRIBUTIONS. | Joshi, Shantanu H; Bowman, Ian; Toga, Arthur W; Van Horn, John D | Proceedings. IEEE International Symposium on Biomedical Imaging. | 21743844 | 2011 Mar 30; |
| fMRI of syntactic processing in typically developing children: structural correlates in the inferior frontal gyrus. | Nunez, S Christopher; Dapretto, Mirella; Katzir, Tami; Starr, Ariel; Bramen, Jennifer; Kan, Eric; Bookheimer, Susan; Sowell, Elizabeth R | Developmental cognitive neuroscience : a journal for cognitive, affective and social developmental neuroscience | 21743820 | 2011 Jul 1 |
| Assessment of mandibular advancement surgery with 3D CBCT models superimposition. | Motta, Alexandre Trindade Simões da; de Assis Ribeiro Carvalho, Felipe; Cevidanes, Lúcia Helena Soares; de Oliveira Almeida, Marco Antonio | Dental press journal of orthodontics. | 21738889 | 2010 Jan; |
| Removing Shape-Preserving Transformations in Square-Root Elastic (SRE) Framework for Shape Analysis of Curves. | Joshi, Shantanu H; Klassen, Eric; Srivastava, Anuj; Jermyn, Ian | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 21738385 | 2007 |
| A knowledge discovery and reuse pipeline for information extraction in clinical notes. | Patrick, Jon D; Nguyen, Dung H M; Wang, Yefeng; Li, Min | Journal of the American Medical Informatics Association : JAMIA | 21737844 | 2011 Sep-Oct |
| The Cardiac Atlas Project--an imaging database for computational modeling and statistical atlases of the heart. | Fonseca, Carissa G; Backhaus, Michael; Bluemke, David A; Britten, Randall D; Chung, Jae Do; Cowan, Brett R; Dinov, Ivo D; Finn, J Paul; Hunter, Peter J; Kadish, Alan H; Lee, Daniel C; Lima, Joao A C; Medrano-Gracia, Pau; Shivkumar, Kalyanam; Suinesiaputra | Bioinformatics (Oxford, England) | 21737439 | 2011 Aug 15 |
| Chronic intestinal inflammation induces stress-response genes in commensal Escherichia coli. | Patwa, Laura G; Fan, Ting-Jia; Tchaptchet, Sandrine; Liu, Yang; Lussier, Yves A; Sartor, R Balfour; Hansen, Jonathan J | Gastroenterology | 21726510 | 2011 Nov |
| Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer. | Kim, Jung H; Dhanasekaran, Saravana M; Prensner, John R; Cao, Xuhong; Robinson, Daniel; Kalyana-Sundaram, Shanker; Huang, Christina; Shankar, Sunita; Jing, Xiaojun; Iyer, Matthew; Hu, Ming; Sam, Lee; Grasso, Catherine; Maher, Christopher A; Palanisamy, Na | Genome research | 21724842 | 2011 Jul |
| Informatics and standards for nanomedicine technology. | Thomas, Dennis G; Klaessig, Fred; Harper, Stacey L; Fritts, Martin; Hoover, Mark D; Gaheen, Sharon; Stokes, Todd H; Reznik-Zellen, Rebecca; Freund, Elaine T; Klemm, Juli D; Paik, David S; Baker, Nathan A | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 21721140 | 2011 Jun 30 |
| Dark regions of no-reflow on late gadolinium enhancement magnetic resonance imaging result in scar formation after atrial fibrillation ablation. | McGann, Christopher; Kholmovski, Eugene; Blauer, Joshua; Vijayakumar, Sathya; Haslam, Thomas; Cates, Joshua; DiBella, Edward; Burgon, Nathan; Wilson, Brent; Alexander, Alton; Prastawa, Marcel; Daccarett, Marcos; Vergara, Gaston; Akoum, Nazem; Parker, Denn | Journal of the American College of Cardiology | 21718914 | 2011 Jul 5 |
| Role of sphingolipids in murine radiation-induced lung injury: protection by sphingosine 1-phosphate analogs. | Mathew, Biji; Jacobson, Jeffrey R; Berdyshev, Evgeny; Huang, Yong; Sun, Xiaoguang; Zhao, Yutong; Gerhold, Lynnette M; Siegler, Jessica; Evenoski, Carrie; Wang, Ting; Zhou, Tong; Zaidi, Rafe; Moreno-Vinasco, Liliana; Bittman, Robert; Chen, Chin Tu; LaRivie | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 21712494 | 2011 Oct |
| RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways. | Mitra, Somdeb; Laederach, Alain; Golden, Barbara L; Altman, Russ B; Brenowitz, Michael | RNA (New York, N.Y.) | 21712400 | 2011 Aug |
| CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms. | Kohlhoff, Kai J; Sosnick, Marc H; Hsu, William T; Pande, Vijay S; Altman, Russ B | Bioinformatics (Oxford, England) | 21712246 | 2011 Aug 15 |
| Using machine learning for concept extraction on clinical documents from multiple data sources. | Torii, Manabu; Wagholikar, Kavishwar; Liu, Hongfang | Journal of the American Medical Informatics Association : JAMIA | 21709161 | 2011 Sep-Oct |
| Survey of modular ontology techniques and their applications in the biomedical domain. | Pathak, Jyotishman; Johnson, Thomas M; Chute, Christopher G | Integrated computer-aided engineering | 21686030 | 2009 Aug |
| Structure-based prediction reveals capping motifs that inhibit ýý-helix aggregation. | Bryan Jr, Allen W; Starner-Kreinbrink, Jennifer L; Hosur, Raghavendra; Clark, Patricia L; Berger, Bonnie | Proceedings of the National Academy of Sciences of the United States of America | 21685332 | 2011 Jul 5 |
| 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. | Uzuner, Ozlem; South, Brett R; Shen, Shuying; DuVall, Scott L | Journal of the American Medical Informatics Association : JAMIA | 21685143 | 2011 Sep-Oct |
| Voxel-based morphometry (VBM) studies in schizophrenia-can white matter changes be reliably detected with VBM? | Melonakos, Eric D; Shenton, Martha E; Rathi, Yogesh; Terry, Douglas P; Bouix, Sylvain; Kubicki, Marek | Psychiatry research | 21684124 | 2011 Aug 30 |
| Using electronic medical records to enable large-scale studies in psychiatry: treatment resistant depression as a model. | Perlis, R H; Iosifescu, D V; Castro, V M; Murphy, S N; Gainer, V S; Minnier, J; Cai, T; Goryachev, S; Zeng, Q; Gallagher, P J; Fava, M; Weilburg, J B; Churchill, S E; Kohane, I S; Smoller, J W | Psychological medicine | 21682950 | 2012 Jan |
| RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples. | Alvarez, Angel; Woolf, Peter J | BMC bioinformatics | 21682879 | 2011 |
| MarkUs: a server to navigate sequence-structure-function space. | Fischer, Markus; Zhang, Qiangfeng Cliff; Dey, Fabian; Chen, Brian Y; Honig, Barry; Petrey, Donald | Nucleic acids research | 21672961 | 2011 Jul |
| BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. | Whetzel, Patricia L; Noy, Natalya F; Shah, Nigam H; Alexander, Paul R; Nyulas, Csongor; Tudorache, Tania; Musen, Mark A | Nucleic acids research | 21672956 | 2011 Jul |
| Using statistical and machine learning to help institutions detect suspicious access to electronic health records. | Boxwala, Aziz A; Kim, Jihoon; Grillo, Janice M; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 21672912 | 2011 Jul-Aug |
| Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. | Chen, James L; Li, Jianrong; Stadler, Walter M; Lussier, Yves A | Journal of the American Medical Informatics Association : JAMIA | 21672909 | 2011 Jul-Aug |
| 2010 translational bioinformatics year in review. | Altman, Russ B; Miller, Katharine S | Journal of the American Medical Informatics Association : JAMIA | 21672905 | 2011 Jul-Aug |
| Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured in JAMIA. | Butte, Atul J; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 21672904 | 2011 Jul-Aug |
| Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation. | Fabbri, Giulia; Rasi, Silvia; Rossi, Davide; Trifonov, Vladimir; Khiabanian, Hossein; Ma, Jing; Grunn, Adina; Fangazio, Marco; Capello, Daniela; Monti, Sara; Cresta, Stefania; Gargiulo, Ernesto; Forconi, Francesco; Guarini, Anna; Arcaini, Luca; Paulli, Ma | The Journal of experimental medicine | 21670202 | 2011 Jul 4 |
| SOCR Analyses: Implementation and Demonstration of a New Graphical Statistics Educational Toolkit. | Chu, Annie; Cui, Jenny; Dinov, Ivo D | Journal of statistical software | 21666874 | 2009 Apr 1 |
| Enhanced brain connectivity in long-term meditation practitioners. | Luders, Eileen; Clark, Kristi; Narr, Katherine L; Toga, Arthur W | NeuroImage | 21664467 | 2011 Aug 15 |
| BRAF mutations in hairy-cell leukemia. | Tiacci, Enrico; Trifonov, Vladimir; Schiavoni, Gianluca; Holmes, Antony; Kern, Wolfgang; Martelli, Maria Paola; Pucciarini, Alessandra; Bigerna, Barbara; Pacini, Roberta; Wells, Victoria A; Sportoletti, Paolo; Pettirossi, Valentina; Mannucci, Roberta; Ell | The New England journal of medicine | 21663470 | 2011 Jun 16 |
| Robust Feature Selection in Resting-State fMRI Connectivity Based on Population Studies. | Venkataraman, Archana; Kubicki, Marek; Westin, Carl-Fredrik; Golland, Polina | Conference on Computer Vision and Pattern Recognition Workshops IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops | 21660131 | 2010 |
| Rare de novo variants associated with autism implicate a large functional network of genes involved in formation and function of synapses. | Gilman, Sarah R; Iossifov, Ivan; Levy, Dan; Ronemus, Michael; Wigler, Michael; Vitkup, Dennis | Neuron | 21658583 | 2011 Jun 9 |
| Populations with elevated mutation load do not benefit from the operation of sexual selection. | Hollis, B; Houle, D | Journal of evolutionary biology | 21658188 | 2011 Sep |
| Confidence interval based parameter estimation--a new SOCR applet and activity. | Christou, Nicolas; Dinov, Ivo D | PloS one | 21655319 | 2011 |
| Reconstruction Using Witness Complexes. | Guibas, Leonidas J; Oudot, Steve Y | Discrete & computational geometry | 21643440 | 2008 Oct 1 |
| Ontological realism: A methodology for coordinated evolution of scientific ontologies. | Smith, Barry; Ceusters, Werner | Applied ontology | 21637730 | 2010 Nov 15 |
| Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association. | Shen, Yufeng; Song, Ruijie; Pe'er, Itsik | Bioinformatics (Oxford, England) | 21636589 | 2011 Jul 15 |
| A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas. | Farrah, Terry; Deutsch, Eric W; Omenn, Gilbert S; Campbell, David S; Sun, Zhi; Bletz, Julie A; Mallick, Parag; Katz, Jonathan E; Malmstrom, Johan; Ossola, Reto; Watts, Julian D; Lin, Biaoyang; Zhang, Hui; Moritz, Robert L; Aebersold, Ruedi | Molecular & cellular proteomics : MCP | 21632744 | 2011 Sep |
| Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources. | Pathak, Jyotishman; Jiang, Guoqian; Dwarkanath, Sridhar O; Buntrock, James D; Chute, Christopher G | Proceedings / IEEE International Conference on Semantic Computing ... ICSC. IEEE International Conference on Semantic Computing | 21625412 | 2008 Aug 12 |
| Modular Ontology Techniques and their Applications in the Biomedical Domain. | Pathak, Jyotishman; Johnson, Thomas M; Chute, Christopher G | Proceedings of the ... IEEE International Conference on Information Reuse and Integration. IEEE International Conference on Information Reuse and Integration | 21625409 | 2008 Aug 5 |
| Modeling of Anatomical Information in Clustering of White Matter Fiber Trajectories Using Dirichlet Distribution. | Maddah, Mahnaz; Zollei, Lilla; Grimson, W Eric L; Wells, William M | Proceedings / sponsored by IEEE Computer Society Technical Committee on Pattern Analysis and Machine Intelligence. Workshop on Mathematical Methods in Biomedical Image Analysis | 21625356 | 2008 Jul 15 |
| HyQue: evaluating hypotheses using Semantic Web technologies. | Callahan, Alison; Dumontier, Michel; Shah, Nigam H | Journal of biomedical semantics. | 21624158 | 2011 May 17; |
| How orthogonal are the OBO Foundry ontologies? | Ghazvinian, Amir; Noy, Natalya F; Musen, Mark A | Journal of biomedical semantics. | 21624157 | 2011 May 17; |
| Integration and publication of heterogeneous text-mined relationships on the Semantic Web. | Coulet, Adrien; Garten, Yael; Dumontier, Michel; Altman, Russ B; Musen, Mark A; Shah, Nigam H | Journal of biomedical semantics. | 21624156 | 2011 May 17; |
| DASH: a method for identical-by-descent haplotype mapping uncovers association with recent variation. | Gusev, Alexander; Kenny, Eimear E; Lowe, Jennifer K; Salit, Jaqueline; Saxena, Richa; Kathiresan, Sekar; Altshuler, David M; Friedman, Jeffrey M; Breslow, Jan L; Pe'er, Itsik | American journal of human genetics | 21620352 | 2011 Jun 10 |
| Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks. | Alvarez, Angel; Woolf, Peter J | BMC systems biology | 21619639 | 2011 |
| Transcriptional profiling of diabetic neuropathy in the BKS db/db mouse: a model of type 2 diabetes. | Pande, Manjusha; Hur, Junguk; Hong, Yu; Backus, Carey; Hayes, John M; Oh, Sang Su; Kretzler, Matthias; Feldman, Eva L | Diabetes | 21617178 | 2011 Jul |
| Can biomechanical variables predict improvement in crouch gait? | Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael H | Gait & posture | 21616666 | 2011 Jun |
| Variants of the caveolin-1 gene: a translational investigation linking insulin resistance and hypertension. | Pojoga, Luminita H; Underwood, Patricia C; Goodarzi, Mark O; Williams, Jonathan S; Adler, Gail K; Jeunemaitre, Xavier; Hopkins, Paul N; Raby, Benjamin A; Lasky-Su, Jessica; Sun, Bei; Cui, Jinrui; Guo, Xiuqing; Taylor, Kent D; Chen, Yii-Der Ida; Xiang, Ann | The Journal of clinical endocrinology and metabolism | 21613355 | 2011 Aug |
| PredUs: a web server for predicting protein interfaces using structural neighbors. | Zhang, Qiangfeng Cliff; Deng, Lei; Fisher, Markus; Guan, Jihong; Honig, Barry; Petrey, Donald | Nucleic acids research | 21609948 | 2011 Jul |
| Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization. | Luo, Weijun; Friedman, Michael S; Hankenson, Kurt D; Woolf, Peter J | BMC systems biology | 21605425 | 2011 |
| Computational modeling of bone density profiles in response to gait: a subject-specific approach. | Pang, Henry; Shiwalkar, Abhishek P; Madormo, Chris M; Taylor, Rebecca E; Andriacchi, Thomas P; Kuhl, Ellen | Biomechanics and modeling in mechanobiology | 21604146 | 2012 Mar |
| Law of Large Numbers: the Theory, Applications and Technology-based Education. | Dinov, Ivo D; Christou, Nicolas; Gould, Robert | Journal of statistics education : an international journal on the teaching and learning of statistics | 21603584 | 2009 Mar |
| A Study of Students' Learning Styles, Discipline Attitudes and Knowledge Acquisition in Technology-Enhanced Probability and Statistics Education. | Christou, Nicolas; Dinov, Ivo D | Journal of online learning and teaching / MERLOT | 21603097 | 2010 Sep |
| Hybrid methods for improving information access in clinical documents: concept, assertion, and relation identification. | Minard, Anne-Lyse; Ligozat, Anne-Laure; Ben Abacha, Asma; Bernhard, Delphine; Cartoni, Bruno; Deleger, Louise; Grau, Brigitte; Rosset, Sophie; Zweigenbaum, Pierre; Grouin, Cyril | Journal of the American Medical Informatics Association : JAMIA | 21597105 | 2011 Sep-Oct |
| Regulation of X-chromosome inactivation by the X-inactivation centre. | Augui, Sandrine; Nora, Elphege P; Heard, Edith | Nature reviews. Genetics | 21587299 | 2011 Jun |
| Intelligence and cortical thickness in children with complex partial seizures. | Tosun, Duygu; Caplan, Rochelle; Siddarth, Prabha; Seidenberg, Michael; Gurbani, Suresh; Toga, Arthur W; Hermann, Bruce | NeuroImage | 21586333 | 2011 Jul 15 |
| Estimation of Myocardial Volume at Risk from CT Angiography. | Zhu, Liangjia; Gao, Yi; Mohan, Vandana; Stillman, Arthur; Faber, Tracy; Tannenbaum, Allen | Proceedings of SPIE--the International Society for Optical Engineering. | 21572535 | 2011 Mar 9; |
| Mapping corticocortical structural integrity in schizophrenia and effects of genetic liability. | Phillips, Owen R; Nuechterlein, Keith H; Asarnow, Robert F; Clark, Kristi A; Cabeen, Ryan; Yang, Yaling; Woods, Roger P; Toga, Arthur W; Narr, Katherine L | Biological psychiatry | 21571255 | 2011 Oct 1 |
| Machine-learned solutions for three stages of clinical information extraction: the state of the art at i2b2 2010. | de Bruijn, Berry; Cherry, Colin; Kiritchenko, Svetlana; Martin, Joel; Zhu, Xiaodan | Journal of the American Medical Informatics Association : JAMIA | 21565856 | 2011 Sep-Oct |
| Translational bioinformatics: linking knowledge across biological and clinical realms. | Sarkar, Indra Neil; Butte, Atul J; Lussier, Yves A; Tarczy-Hornoch, Peter; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 21561873 | 2011 Jul-Aug |
| Preliminary evidence of within-subject changes in gray matter density associated with remission of bipolar depression. | Brooks 3rd, John O; Foland-Ross, Lara C; Thompson, Paul M; Altshuler, Lori L | Psychiatry research | 21561743 | 2011 Jul 30 |
| Diffusion tensor imaging of anterior commissural fibers in patients with schizophrenia. | Choi, Hongyoon; Kubicki, Marek; Whitford, Thomas J; Alvarado, Jorge L; Terry, Douglas P; Niznikiewicz, Margaret; McCarley, Robert W; Kwon, Jun Soo; Shenton, Martha E | Schizophrenia research | 21561738 | 2011 Aug |
| Integrated, Multidisciplinary and Technology-Enhanced Science Education: The Next Frontier. | Dinov, Ivo D | Journal of online learning and teaching / MERLOT | 21552453 | 2008 Mar 1 |
| Enabling enrichment analysis with the Human Disease Ontology. | LePendu, Paea; Musen, Mark A; Shah, Nigam H | Journal of biomedical informatics | 21550421 | 2011 Dec |
| SOCR Analyses - an Instructional Java Web-based Statistical Analysis Toolkit. | Chu, Annie; Cui, Jenny; Dinov, Ivo D | Journal of online learning and teaching / MERLOT | 21546994 | 2009 Mar 1 |
| Early brain overgrowth in autism associated with an increase in cortical surface area before age 2 years. | Hazlett, Heather Cody; Poe, Michele D; Gerig, Guido; Styner, Martin; Chappell, Chad; Smith, Rachel Gimpel; Vachet, Clement; Piven, Joseph | Archives of general psychiatry | 21536976 | 2011 May |
| HD CAG-correlated gene expression changes support a simple dominant gain of function. | Jacobsen, Jessie C; Gregory, Gillian C; Woda, Juliana M; Thompson, Morgan N; Coser, Kathryn R; Murthy, Vidya; Kohane, Isaac S; Gusella, James F; Seong, Ihn Sik; MacDonald, Marcy E; Shioda, Toshi; Lee, Jong-Min | Human molecular genetics | 21536587 | 2011 Jul 15 |
| Spatially regularized compressed sensing for high angular resolution diffusion imaging. | Michailovich, Oleg; Rathi, Yogesh; Dolui, Sudipto | IEEE transactions on medical imaging | 21536524 | 2011 May |
| Testing and Validating Machine Learning Classifiers by Metamorphic Testing. | Xie, Xiaoyuan; Ho, Joshua W K; Murphy, Christian; Kaiser, Gail; Xu, Baowen; Chen, Tsong Yueh | The Journal of systems and software | 21532969 | 2011 Apr 1 |
| The Fok1 vitamin D receptor gene polymorphism is associated with plasma renin activity in Caucasians. | Vaidya, Anand; Sun, Bei; Forman, John P; Hopkins, Paul N; Brown, Nancy J; Kolatkar, Nikheel S; Williams, Gordon H; Williams, Jonathan S | Clinical endocrinology | 21521263 | 2011 Jun |
| Clinical application of 3D imaging for assessment of treatment outcomes. | Cevidanes, Lucia H C; Oliveira, Ana Emilia Figueiredo; Grauer, Dan; Styner, Martin; Proffit, William R | Seminars in orthodontics. | 21516170 | 2011 Mar 1; |
| In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: a surface-based analysis. | Cohen-Adad, J; Benner, T; Greve, D; Kinkel, R P; Radding, A; Fischl, B; Rosen, B R; Mainero, C | NeuroImage | 21511042 | 2011 Jul 1 |
| Graphical procedures for evaluating overall and subject-specific incremental values from new predictors with censored event time data. | Uno, Hajime; Cai, Tianxi; Tian, Lu; Wei, L J | Biometrics | 21504421 | 2011 Dec |
| Fibre operating lengths of human lower limb muscles during walking. | Arnold, Edith M; Delp, Scott L | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 21502124 | 2011 May 27 |
| Three-dimensional quantification of mandibular asymmetry through cone-beam computerized tomography. | Cevidanes, Lucia H S; Alhadidi, Abeer; Paniagua, Beatriz; Styner, Martin; Ludlow, John; Mol, Andre; Turvey, Timothy; Proffit, William R; Rossouw, Paul Emile | Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics. | 21497527 | 2011 Jun; |
| Object tracking and target reacquisition based on 3-D range data for moving vehicles. | Lee, Jehoon; Lankton, Shawn; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 21486717 | 2011 Oct |
| Remote thioredoxin recognition using evolutionary conservation and structural dynamics. | Tang, Grace W; Altman, Russ B | Structure (London, England : 1993) | 21481770 | 2011 Apr 13 |
| XCEDE: an extensible schema for biomedical data. | Gadde, Syam; Aucoin, Nicole; Grethe, Jeffrey S; Keator, David B; Marcus, Daniel S; Pieper, Steve; FBIRN, MBIRN, BIRN-CC | Neuroinformatics | 21479735 | 2012 Jan |
| SOCR Motion Charts: An Efficient, Open-Source, Interactive and Dynamic Applet for Visualizing Longitudinal Multivariate Data. | Al-Aziz, Jameel; Christou, Nicolas; Dinov, Ivo D | Journal of statistics education : an international journal on the teaching and learning of statistics. | 21479108 | 2010; |
| Fast approximate stochastic tractography. | Iglesias, Juan Eugenio; Thompson, Paul M; Liu, Cheng-Yi; Tu, Zhuowen | Neuroinformatics | 21476037 | 2012 Jan |
| Data Synthesis and Tool Development for Exploring Imaging Genomic Patterns. | Kim, Sungeun; Shen, Li; Saykin, Andrew J; West, John D | IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology proceedings IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. | 21461341 | 2009 Mar 30; |
| Aberrantly Expressed Genes in HaCaT Keratinocytes Chronically Exposed to Arsenic Trioxide. | Udensi, Udensi K; Cohly, Hari H P; Graham-Evans, Barbara E; Ndebele, Kenneth; Garcia-Reyero, Natàlia; Nanduri, Bindu; Tchounwou, Paul B; Isokpehi, Raphael D | Biomarker insights. | 21461292 | 2011 Feb 08; |
| Configuration Fuzzing for Software Vulnerability Detection. | Dai, Huning; Murphy, Christian; Kaiser, Gail | Proceedings / The ... International Conference on Availability, Reliability and Security. International Conference on Availability, Reliability and Security | 21461049 | 2010 Feb 15 |
| Hippocampal morphology in lithium and non-lithium-treated bipolar I disorder patients, non-bipolar co-twins, and control twins. | van Erp, Theo G M; Thompson, Paul M; Kieseppa, Tuula; Bearden, Carrie E; Marino, Alexandria C; Hoftman, Gil D; Haukka, Jari; Partonen, Timo; Huttunen, Matti; Kaprio, Jaakko; Lonnqvist, Jouko; Poutanen, Veli-Pekka; Toga, Arthur W; Cannon, Tyrone D | Human brain mapping. | 21455943 | 2012 Mar; |
| SOCR: Statistics Online Computational Resource. | Dinov, Ivo D | Journal of statistical software | 21451741 | 2006 Oct 1 |
| Impact of nonrigid motion correction technique on pixel-wise pharmacokinetic analysis of free-breathing pulmonary dynamic contrast-enhanced MR imaging. | Tokuda, Junichi; Mamata, Hatsuho; Gill, Ritu R; Hata, Nobuhiko; Kikinis, Ron; Padera Jr, Robert F; Lenkinski, Robert E; Sugarbaker, David J; Hatabu, Hiroto | Journal of magnetic resonance imaging : JMRI | 21448965 | 2011 Apr |
| Planum temporale grey matter asymmetries in chimpanzees (Pan troglodytes), vervet (Chlorocebus aethiops sabaeus), rhesus (Macaca mulatta) and bonnet (Macaca radiata) monkeys. | Lyn, Heidi; Pierre, Peter; Bennett, Allyson J; Fears, Scott; Woods, Roger; Hopkins, William D | Neuropsychologia | 21447349 | 2011 Jun |
| Surface-based TBM boosts power to detect disease effects on the brain: an N=804 ADNI study. | Wang, Yalin; Song, Yang; Rajagopalan, Priya; An, Tuo; Liu, Krystal; Chou, Yi-Yu; Gutman, Boris; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative | NeuroImage | 21440071 | 2011 Jun 15 |
| In vitro validation of finite-element model of AAA hemodynamics incorporating realistic outlet boundary conditions. | Kung, Ethan O; Les, Andrea S; Medina, Francisco; Wicker, Ryan B; McConnell, Michael V; Taylor, Charles A | Journal of biomechanical engineering | 21428677 | 2011 Apr |
| GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. | Yang, Xinan; Li, Jianrong; Lee, Younghee; Lussier, Yves A | Bioinformatics (Oxford, England) | 21421553 | 2011 May 15 |
| Appearance frequency modulated gene set enrichment testing. | Ma, Jun; Sartor, Maureen A; Jagadish, H V | BMC bioinformatics | 21418606 | 2011 |
| Regional brain volume reductions relate to facial dysmorphology and neurocognitive function in fetal alcohol spectrum disorders. | Roussotte, Florence F; Sulik, Kathleen K; Mattson, Sarah N; Riley, Edward P; Jones, Kenneth L; Adnams, Colleen M; May, Philip A; O'Connor, Mary J; Narr, Katherine L; Sowell, Elizabeth R | Human brain mapping | 21416562 | 2012 Apr |
| AnyExpress: integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm. | Kim, Jihoon; Patel, Kiltesh; Jung, Hyunchul; Kuo, Winston P; Ohno-Machado, Lucila | BMC bioinformatics | 21410990 | 2011 |
| In vitro validation of finite element analysis of blood flow in deformable models. | Kung, Ethan O; Les, Andrea S; Figueroa, C Alberto; Medina, Francisco; Arcaute, Karina; Wicker, Ryan B; McConnell, Michael V; Taylor, Charles A | Annals of biomedical engineering | 21404126 | 2011 Jul |
| The influence of body mass index and renin-angiotensin-aldosterone system activity on the relationship between 25-hydroxyvitamin D and adiponectin in Caucasian men. | Vaidya, Anand; Forman, John P; Underwood, Patricia C; Hopkins, Paul N; Williams, Gordon H; Pojoga, Luminita H; Williams, Jonathan S | European journal of endocrinology / European Federation of Endocrine Societies | 21402748 | 2011 Jun |
| Deformation-based morphometry of prospective neurodevelopmental changes in new onset paediatric epilepsy. | Tosun, Duygu; Dabbs, Kevin; Caplan, Rochelle; Siddarth, Prabha; Toga, Arthur; Seidenberg, Michael; Hermann, Bruce | Brain : a journal of neurology | 21398377 | 2011 Apr |
| Increased SRF transcriptional activity in human and mouse skeletal muscle is a signature of insulin resistance. | Jin, Wanzhu; Goldfine, Allison B; Boes, Tanner; Henry, Robert R; Ciaraldi, Theodore P; Kim, Eun-Young; Emecan, Merve; Fitzpatrick, Connor; Sen, Anish; Shah, Ankit; Mun, Edward; Vokes, Vokes; Schroeder, Joshua; Tatro, Elizabeth; Jimenez-Chillaron, Jose; Pa | The Journal of clinical investigation | 21393865 | 2011 Mar |
| Effects of childhood absence epilepsy on associations between regional cortical morphometry and aging and cognitive abilities. | Tosun, Duygu; Siddarth, Prabha; Toga, Arthur W; Hermann, Bruce; Caplan, Rochelle | Human brain mapping | 21391248 | 2011 Apr |
| Mapping between the OBO and OWL ontology languages. | Tirmizi, Syed Hamid; Aitken, Stuart; Moreira, Dilvan A; Mungall, Chris; Sequeda, Juan; Shah, Nigam H; Miranker, Daniel P | Journal of biomedical semantics. | 21388572 | 2011 Mar 07; |
| Compressing genomic sequence fragments using SlimGene. | Kozanitis, Christos; Saunders, Chris; Kruglyak, Semyon; Bafna, Vineet; Varghese, George | Journal of computational biology : a journal of computational molecular cell biology | 21385043 | 2011 Mar |
| RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS. | Wahlby, Carolina; Riklin-Raviv, Tammy; Ljosa, Vebjorn; Conery, Annie L; Golland, Polina; Ausubel, Frederick M; Carpenter, Anne E | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 21383863 | 2010 Jun 21 |
| Double dissociation in the anatomy of socioemotional disinhibition and executive functioning in dementia. | Krueger, Casey E; Laluz, Victor; Rosen, Howard J; Neuhaus, John M; Miller, Bruce L; Kramer, Joel H | Neuropsychology | 21381829 | 2011 Mar |
| Shape alterations in the striatum in chorea-acanthocytosis. | Walterfang, Mark; Looi, Jeffrey Chee Leong; Styner, Martin; Walker, Ruth H; Danek, Adrian; Niethammer, Marc; Evans, Andrew; Kotschet, Katya; Rodrigues, Guilherme R; Hughes, Andrew; Velakoulis, Dennis | Psychiatry research | 21377843 | 2011 Apr 30 |
| Automated analysis of fundamental features of brain structures. | Lancaster, Jack L; McKay, D Reese; Cykowski, Matthew D; Martinez, Michael J; Tan, Xi; Valaparla, Sunil; Zhang, Yi; Fox, Peter T | Neuroinformatics | 21360205 | 2011 Dec |
| Extraction of Conditional Probabilities of the Relationships Between Drugs, Diseases, and Genes from PubMed Guided by Relationships in PharmGKB. | Theobald, Martin; Shah, Nigam; Shrager, Jeff | Summit on translational bioinformatics. | 21347183 | 2009; |
| Toward an ontological treatment of disease and diagnosis. | Scheuermann, Richard H; Ceusters, Werner; Smith, Barry | Summit on translational bioinformatics. | 21347182 | 2009; |
| Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. | Pantazatos, Spiro P; Li, Jianrong; Pavlidis, Paul; Lussier, Yves A | Summit on translational bioinformatics. | 21347176 | 2009 Mar 01; |
| Integrating automated workflows, human intelligence and collaboration. | Mirel, Barbara; Eichinger, Felix; Nair, Viji; Kretzler, Matthias | Summit on translational bioinformatics. | 21347175 | 2009 Mar 01; |
| The open biomedical annotator. | Jonquet, Clement; Shah, Nigam H; Musen, Mark A | Summit on translational bioinformatics. | 21347171 | 2009; |
| Comorbidity of bipolar disorder with substance abuse: selection of prioritized genes for translational research. | Isokpehi, Raphael D; Lewis, Sharon A; Oyeleye, Tolulola O; Ayensu, Wellington K; Gerald, Tonya M | Summit on translational bioinformatics. | 21347170 | 2009 Mar 01; |
| User requirements for exploring a resource inventory for clinical research. | Mirel, Barbara R; Wright, Zachary; Tenenbaum, Jessica D; Saxman, Paul; Smith, Kevin A | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 21347144 | 2010 Mar 01; |
| Biomolecular Systems of Disease Buried Across Multiple GWAS Unveiled by Information Theory and Ontology. | Lee, Younghee; Li, Jianrong; Gamazon, Eric; Chen, James L; Tikhomirov, Anna; Cox, Nancy J; Lussier, Yves A | AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science | 21347143 | 2010 |
| Evaluation of an Ontology-anchored Natural Language-based Approach for Asserting Multi-scale Biomolecular Networks for Systems Medicine. | Borlawsky, Tara B; Li, Jianrong; Shagina, Lyudmila; Crowson, Matthew G; Liu, Yang; Friedman, Carol; Lussier, Yves A | AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science | 21347135 | 2010 |
| A diagram editor for efficient biomedical knowledge capture and integration. | Yu, Bohua; Jakupovic, Elvis; Wilson, Justin; Dai, Manhong; Xuan, Weijian; Mirel, Barbara; Athey, Brian; Watson, Stanley; Meng, Fan | Summit on translational bioinformatics. | 21347131 | 2008 Mar 01; |
| Toward the commoditization of translational genomic research: Design and implementation features of the Galaxy genomic workbench. | Lazarus, Ross; Taylor, James; Qiu, Weiliang; Nekrutenko, Anton | Summit on translational bioinformatics. | 21347127 | 2008 Mar 01; |
| A Comprehensive Analysis of Five Million UMLS Metathesaurus Terms Using Eighteen Million MEDLINE Citations. | Xu, Rong; Musen, Mark A; Shah, Nigam H | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 21347110 | 2010; |
| An ontology-neutral framework for enrichment analysis. | Tirrell, Rob; Evani, Uday; Berman, Ari E; Mooney, Sean D; Musen, Mark A; Shah, Nigam H | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 21347088 | 2010; |
| CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. | Tao, Cui; Wei, Wei-Qi; Solbrig, Harold R; Savova, Guergana; Chute, Christopher G | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 21347086 | 2010; |
| The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies. | Parai, Gautam K; Jonquet, Clement; Xu, Rong; Musen, Mark A; Shah, Nigam H | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 21347046 | 2010; |
| The ontology life cycle: Integrated tools for editing, publishing, peer review, and evolution of ontologies. | Noy, Natalya; Tudorache, Tania; Nyulas, Csongor; Musen, Mark | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 21347039 | 2010; |
| Automatic Prediction of Conversion from Mild Cognitive Impairment to Probable Alzheimer's Disease using Structural Magnetic Resonance Imaging. | Nho, Kwangsik; Shen, Li; Kim, Sungeun; Risacher, Shannon L; West, John D; Foroud, Tatiana; Jack, Clifford R; Weiner, Michael W; Saykin, Andrew J | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 21347037 | 2010 Nov 13; |
| Strobe sequence design for haplotype assembly. | Lo, Christine; Bashir, Ali; Bansal, Vikas; Bafna, Vineet | BMC bioinformatics | 21342554 | 2011 |
| Identification of common microRNA-mRNA regulatory biomodules in human epithelial cancers. | Yang, Xinan; Lee, Younghee; Fan, Hong; Sun, Xiao; Lussier, Yves A | Chinese science bulletin = Kexue tongbao | 21340045 | 2010 Nov |
| Anisotropic Laplace-Beltrami Eigenmaps: Bridging Reeb Graphs and Skeletons. | Shi, Yonggang; Lai, Rongjie; Krishna, Sheila; Sicotte, Nancy; Dinov, Ivo; Toga, Arthur W | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. | 21339850 | 2008 Jul 15; |
| LAPLACE-BELTRAMI NODAL COUNTS: A NEW SIGNATURE FOR 3D SHAPE ANALYSIS. | Lai, Rongjie; Shi, Yonggang; Dinov, Ivo; Chan, Tony F; Toga, Arthur W | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging. | 21339849 | 2009 Aug 7; |
| FADTTS: functional analysis of diffusion tensor tract statistics. | Zhu, Hongtu; Kong, Linglong; Li, Runze; Styner, Martin; Gerig, Guido; Lin, Weili; Gilmore, John H | NeuroImage | 21335092 | 2011 Jun 1 |
| BN+1 Bayesian network expansion for identifying molecular pathway elements. | Hodges, Andrew P; Woolf, Peter; He, Yongqun | Communicative & integrative biology. | 21331236 | 2010 Nov; |
| Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. | Kinsella, Marcus; Harismendy, Olivier; Nakano, Masakazu; Frazer, Kelly A; Bafna, Vineet | Bioinformatics (Oxford, England) | 21330288 | 2011 Apr 15 |
| Comprehensive genetic assessment of a functional TLR9 promoter polymorphism: no replicable association with asthma or asthma-related phenotypes. | Lange, Nancy E; Zhou, Xiaobo; Lasky-Su, Jessica; Himes, Blanca E; Lazarus, Ross; Soto-Quiros, Manuel; Avila, Lydiana; Celedon, Juan C; Hawrylowicz, Catherine M; Raby, Benjamin A; Litonjua, Augusto A | BMC medical genetics | 21324137 | 2011 |
| A Novel Representation for Riemannian Analysis of Elastic Curves in ýýý | Joshi, Shantanu H; Klassen, Eric; Srivastava, Anuj; Jermyn, Ian | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 21311729 | 2007 Jul 16 |
| Concept Systems and Ontologies: Recommendations for Basic Terminology. | Klein, Gunnar O; Smith, Barry | Transactions of the Japanese Society for Artificial Intelligence = Jinko Chino Gakkai ronbunshi | 21308002 | 2010 Jan 1 |
| The association of the angiotensinogen gene with insulin sensitivity in humans: a tagging single nucleotide polymorphism and haplotype approach. | Underwood, Patricia C; Sun, Bei; Williams, Jonathan S; Pojoga, Luminita H; Raby, Benjamin; Lasky-Su, Jessica; Hunt, Steven; Hopkins, Paul N; Jeunemaitre, Xavier; Adler, Gail K; Williams, Gordon H | Metabolism: clinical and experimental | 21306748 | 2011 Aug |
| Mean diffusivity and fractional anisotropy as indicators of disease and genetic liability to schizophrenia. | Clark, Kristi A; Nuechterlein, Keith H; Asarnow, Robert F; Hamilton, Liberty S; Phillips, Owen R; Hageman, Nathan S; Woods, Roger P; Alger, Jeffry R; Toga, Arthur W; Narr, Katherine L | Journal of psychiatric research | 21306734 | 2011 Jul |
| Meeting Report from the Second ''Minimum Information for Biological and Biomedical Investigations'' (MIBBI) workshop. | Kettner, Carsten; Field, Dawn; Sansone, Susanna-Assunta; Taylor, Chris; Aerts, Jan; Binns, Nigel; Blake, Andrew; Britten, Cedrik M; de Marco, Ario; Fostel, Jennifer; Gaudet, Pascale; Gonzalez-Beltran, Alejandra; Hardy, Nigel; Hellemans, Jan; Hermjakob, He | Standards in genomic sciences. | 21304730 | 2010; |
| Statistics Online Computational Resource for Education. | Dinov, Ivo D; Christou, Nicolas | Teaching statistics. | 21297884 | 2009 May; |
| Evidence for somatic gene conversion and deletion in bipolar disorder, Crohn's disease, coronary artery disease, hypertension, rheumatoid arthritis, type-1 diabetes, and type-2 diabetes. | Ross, Kenneth Andrew | BMC medicine | 21291537 | 2011 |
| AN EFFICIENT NUMERICAL METHOD FOR THE SOLUTION OF THE L(2) OPTIMAL MASS TRANSFER PROBLEM. | Haber, Eldad; Rehman, Tauseef; Tannenbaum, Allen | SIAM journal on scientific computing : a publication of the Society for Industrial and Applied Mathematics | 21278828 | 2010 |
| TETRAHEDRAL MESH GENERATION FOR MEDICAL IMAGES WITH MULTIPLE REGIONS USING ACTIVE SURFACES. | Lederman, Carl; Joshi, Anand; Dinov, Ivo; Van Horn, John Darrell; Vese, Luminita; Toga, Arthur | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 21278816 | 2010 Apr 14 |
| Statistical analysis of fiber bundles using multi-tensor tractography: application to first-episode schizophrenia. | Rathi, Yogesh; Kubicki, Marek; Bouix, Sylvain; Westin, Carl-Fredrik; Goldstein, Jill; Seidman, Larry; Mesholam-Gately, Raquelle; McCarley, Robert W; Shenton, Martha E | Magnetic resonance imaging. | 21277725 | 2011 May; |
| Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment. | Costafreda, Sergi G; Dinov, Ivo D; Tu, Zhuowen; Shi, Yonggang; Liu, Cheng-Yi; Kloszewska, Iwona; Mecocci, Patrizia; Soininen, Hilkka; Tsolaki, Magda; Vellas, Bruno; Wahlund, Lars-Olof; Spenger, Christian; Toga, Arthur W; Lovestone, Simon; Simmons, Andrew | NeuroImage | 21272654 | 2011 May 1 |
| Loss of subcellular lipid transport due to ARV1 deficiency disrupts organelle homeostasis and activates the unfolded protein response. | Shechtman, Caryn F; Henneberry, Annette L; Seimon, Tracie A; Tinkelenberg, Arthur H; Wilcox, Lisa J; Lee, Eunjee; Fazlollahi, Mina; Munkacsi, Andrew B; Bussemaker, Harmen J; Tabas, Ira; Sturley, Stephen L | The Journal of biological chemistry | 21266578 | 2011 Apr 8 |
| Brain structure correlates of individual differences in the acquisition and inhibition of conditioned fear. | Hartley, Catherine A; Fischl, Bruce; Phelps, Elizabeth A | Cerebral cortex (New York, N.Y. : 1991) | 21263037 | 2011 Sep |
| Stochastic tractography study of Inferior Frontal Gyrus anatomical connectivity in schizophrenia. | Kubicki, Marek; Alvarado, Jorge L; Westin, Carl-Fredrik; Tate, David F; Markant, Douglas; Terry, Douglas P; Whitford, Thomas J; De Siebenthal, Julien; Bouix, Sylvain; McCarley, Robert W; Kikinis, Ron; Shenton, Martha E | NeuroImage | 21256966 | 2011 Apr 15 |
| Three-dimensional regional displacements after mandibular advancement surgery: one year of follow-up. | Motta, Alexandre T; Cevidanes, Lucia H S; Carvalho, Felipe A R; Almeida, Marco A O; Phillips, Ceib | Journal of oral and maxillofacial surgery : official journal of the American Association of Oral and Maxillofacial Surgeons. | 21256643 | 2011 May; |
| DTI registration in atlas based fiber analysis of infantile Krabbe disease. | Wang, Yi; Gupta, Aditya; Liu, Zhexing; Zhang, Hui; Escolar, Maria L; Gilmore, John H; Gouttard, Sylvain; Fillard, Pierre; Maltbie, Eric; Gerig, Guido; Styner, Martin | NeuroImage | 21256236 | 2011 Apr 15 |
| Benchmarking ontologies: bigger or better? | Yao, Lixia; Divoli, Anna; Mayzus, Ilya; Evans, James A; Rzhetsky, Andrey | PLoS computational biology | 21249231 | 2011 |
| The emerging role of electronic medical records in pharmacogenomics. | Wilke, R A; Xu, H; Denny, J C; Roden, D M; Krauss, R M; McCarty, C A; Davis, R L; Skaar, T; Lamba, J; Savova, G | Clinical pharmacology and therapeutics | 21248726 | 2011 Mar |
| A 4-channel 3 Tesla phased array receive coil for awake rhesus monkey fMRI and diffusion MRI experiments. | Khachaturian, Mark Haig | Journal of biomedical science and engineering. | 21243106 | 2010 Jan 01; |
| Application of Metamorphic Testing to Supervised Classifiers. | Xie, Xiaoyuan; Ho, Joshua; Murphy, Christian; Kaiser, Gail; Xu, Baowen; Chen, Tsong Yueh | Proceedings / International Conference on Quality Software. International Conference on Quality Software | 21243103 | 2010 Jan 15 |
| Ontologies for clinical and translational research: Introduction. | Smith, Barry; Scheuermann, Richard H | Journal of biomedical informatics | 21241822 | 2011 Feb |
| The contribution of genes to cortical thickness and volume. | Joshi, Anand A; Lepore, Natasha; Joshi, Shantanu H; Lee, Agatha D; Barysheva, Marina; Stein, Jason L; McMahon, Katie L; Johnson, Kori; de Zubicaray, Greig I; Martin, Nicholas G; Wright, Margaret J; Toga, Arthur W; Thompson, Paul M | Neuroreport | 21233781 | 2011 Feb 16 |
| A CD133-related gene expression signature identifies an aggressive glioblastoma subtype with excessive mutations. | Yan, Xiaowei; Ma, Li; Yi, Danielle; Yoon, Jae-geun; Diercks, Alan; Foltz, Gregory; Price, Nathan D; Hood, Leroy E; Tian, Qiang | Proceedings of the National Academy of Sciences of the United States of America | 21220328 | 2011 Jan 25 |
| Genetic basis of autoantibody positive and negative rheumatoid arthritis risk in a multi-ethnic cohort derived from electronic health records. | Kurreeman, Fina; Liao, Katherine; Chibnik, Lori; Hickey, Brendan; Stahl, Eli; Gainer, Vivian; Li, Gang; Bry, Lynn; Mahan, Scott; Ardlie, Kristin; Thomson, Brian; Szolovits, Peter; Churchill, Susanne; Murphy, Shawn N; Cai, Tianxi; Raychaudhuri, Soumya; Koh | American journal of human genetics | 21211616 | 2011 Jan 7 |
| Soft tissue response to mandibular advancement using 3D CBCT scanning. | Almeida, R C; Cevidanes, L H S; Carvalho, F A R; Motta, A T; Almeida, M A O; Styner, M; Turvey, T; Proffit, W R; Phillips, C | International journal of oral and maxillofacial surgery. | 21208782 | 2011 Apr; |
| A new metric for detecting change in slowly evolving brain tumors: validation in meningioma patients. | Pohl, Kilian M; Konukoglu, Ender; Novellas, Sebastian; Ayache, Nicholas; Fedorov, Andriy; Talos, Ion-Florin; Golby, Alexandra; Wells, William M; Kikinis, Ron; Black, Peter M | Neurosurgery | 21206318 | 2011 Mar |
| Towards BioDBcore: a community-defined information specification for biological databases. | Gaudet, Pascale; Bairoch, Amos; Field, Dawn; Sansone, Susanna-Assunta; Taylor, Chris; Attwood, Teresa K; Bateman, Alex; Blake, Judith A; Bult, Carol J; Cherry, J Michael; Chisholm, Rex L; Cochrane, Guy; Cook, Charles E; Eppig, Janan T; Galperin, Michael Y; Gentleman, Robert; Goble, Carole A; Gojobori, Takashi; Hancock, John M; Howe, Douglas G; Imanishi, Tadashi; Kelso, Janet; Landsman, David; Lewis, Suzanna E; Karsch Mizrachi, Ilene; Orchard, Sandra; Ouellette, B F Francis; Ranganathan, Shoba; Richardson, Lorna; Rocca-Serra, Philippe; Schofield, Paul N; Smedley, Damian; Southan, Christopher; Tan, Tin W; Tatusova, Tatiana; Whetzel, Patricia L; White, Owen; Yamasaki, Chisato; BioDBCore Working Group | Database : the journal of biological databases and curation. | 21205783 | 2011; |
| Automatic Detection of Previously-Unseen Application States for Deployment Environment Testing and Analysis. | Murphy, Christian; Vaughan, Moses; Ilahi, Waseem; Kaiser, Gail | Proceedings of the ... International Workshop on Automation of Software Test. International Workshop on Automation of Software Test | 21197140 | 2010 |
| BDNF gene effects on brain circuitry replicated in 455 twins. | Chiang, Ming-Chang; Barysheva, Marina; Toga, Arthur W; Medland, Sarah E; Hansell, Narelle K; James, Michael R; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M | NeuroImage | 21195196 | 2011 Mar 15 |
| Computational modeling of growth: systemic and pulmonary hypertension in the heart. | Rausch, M K; Dam, A; Goktepe, S; Abilez, O J; Kuhl, E | Biomechanics and modeling in mechanobiology | 21188611 | 2011 Dec |
| Clinical application of SPHARM-PDM to quantify temporomandibular joint osteoarthritis. | Paniagua, Beatriz; Cevidanes, Lucia; Walker, David; Zhu, Hongtu; Guo, Ruixin; Styner, Martin | Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society | 21185694 | 2011 Jul |
| Statistical method for revealing form-function relations in biological networks. | Mugler, Andrew; Grinshpun, Boris; Franks, Riley; Wiggins, Chris H | Proceedings of the National Academy of Sciences of the United States of America | 21183719 | 2011 Jan 11 |
| Calculation of local water densities in biological systems: a comparison of molecular dynamics simulations and the 3D-RISM-KH molecular theory of solvation. | Stumpe, Martin C; Blinov, Nikolay; Wishart, David; Kovalenko, Andriy; Pande, Vijay S | The journal of physical chemistry. B | 21174421 | 2011 Jan 20 |
| Nonparametric clustering for studying RNA conformations. | Le Faucheur, Xavier; Hershkovits, Eli; Tannenbaum, Rina; Tannenbaum, Allen | IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM | 21173460 | 2011 Nov-Dec |
| Discovering Structural Regularity in 3D Geometry. | Pauly, Mark; Mitra, Niloy J; Wallner, Johannes; Pottmann, Helmut; Guibas, Leonidas J | ACM transactions on graphics. | 21170292 | 2008 Aug 1; |
| Minimal formulation of joint motion for biomechanisms. | Seth, Ajay; Sherman, Michael; Eastman, Peter; Delp, Scott | Nonlinear Dynamics | 21170173 | 2010 Oct 1 |
| Deformable spanners and applications. | Gao, Jie; Guibas, Leonidas J; Nguyen, An | Computational geometry : theory and applications | 21165161 | 2006 Aug 1 |
| Meshless Animation of Fracturing Solids. | Pauly, Mark; Keiser, Richard; Adams, Bart; Dutre, Philip; Gross, Markus; Guibas, Leonidas J | ACM transactions on graphics | 21165160 | 2005 Jul 1 |
| A package for exact kinetic data structures and sweepline algorithms. | Russel, Daniel; Karavelas, Menelaos I; Guibas, Leonidas J | Computational geometry : theory and applications | 21165159 | 2007 Sep 1 |
| Outcome quantification using SPHARM-PDM toolbox in orthognathic surgery. | Paniagua, Beatriz; Cevidanes, Lucia; Zhu, Hongtu; Styner, Martin | International journal of computer assisted radiology and surgery | 21161693 | 2011 Sep |
| Potential for electronic health records and online social networking to redefine medical research. | Pearson, John F; Brownstein, Catherine A; Brownstein, John S | Clinical chemistry | 21159898 | 2011 Feb |
| CUDA optimization strategies for compute- and memory-bound neuroimaging algorithms. | Lee, Daren; Dinov, Ivo; Dong, Bin; Gutman, Boris; Yanovsky, Igor; Toga, Arthur W | Computer methods and programs in biomedicine | 21159404 | 2012 Jun |
| Foundations for a realist ontology of mental disease. | Ceusters, Werner; Smith, Barry | Journal of biomedical semantics. | 21143905 | 2010; |
| NGSQC: cross-platform quality analysis pipeline for deep sequencing data. | Dai, Manhong; Thompson, Robert C; Maher, Christopher; Contreras-Galindo, Rafael; Kaplan, Mark H; Markovitz, David M; Omenn, Gil; Meng, Fan | BMC genomics | 21143816 | 2010 |
| Cross-domain neurobiology data integration and exploration. | Xuan, Weijian; Dai, Manhong; Buckner, Josh; Mirel, Barbara; Song, Jean; Athey, Brian; Watson, Stanley J; Meng, Fan | BMC genomics | 21143788 | 2010 |
| Development of stereotactic mass spectrometry for brain tumor surgery. | Agar, Nathalie Y R; Golby, Alexandra J; Ligon, Keith L; Norton, Isaiah; Mohan, Vandana; Wiseman, Justin M; Tannenbaum, Allen; Jolesz, Ferenc A | Neurosurgery | 21135749 | 2011 Feb |
| Interactive diffusion tensor tractography visualization for neurosurgical planning. | Golby, Alexandra J; Kindlmann, Gordon; Norton, Isaiah; Yarmarkovich, Alexander; Pieper, Steven; Kikinis, Ron | Neurosurgery | 21135713 | 2011 Feb |
| Resting-state fMRI can reliably map neural networks in children. | Thomason, Moriah E; Dennis, Emily L; Joshi, Anand A; Joshi, Shantanu H; Dinov, Ivo D; Chang, Catie; Henry, Melissa L; Johnson, Rebecca F; Thompson, Paul M; Toga, Arthur W; Glover, Gary H; Van Horn, John D; Gotlib, Ian H | NeuroImage | 21134471 | 2011 Mar 1 |
| Modeling Spatial Patterns of Shapes. | Srivastava, Anuj; Liu, Wei; Joshi, Shantanu H | Proceedings / ICIP ... International Conference on Image Processing. | 21132063 | 2008 Dec 12; |
| An integrated approach to uncover drivers of cancer. | Akavia, Uri David; Litvin, Oren; Kim, Jessica; Sanchez-Garcia, Felix; Kotliar, Dylan; Causton, Helen C; Pochanard, Panisa; Mozes, Eyal; Garraway, Levi A; Pe'er, Dana | Cell | 21129771 | 2010 Dec 10 |
| Transforming growth factor-beta signaling pathway in patients with Kawasaki disease. | Shimizu, Chisato; Jain, Sonia; Davila, Sonia; Hibberd, Martin L; Lin, Kevin O; Molkara, Delaram; Frazer, Jeffrey R; Sun, Shelly; Baker, Annette L; Newburger, Jane W; Rowley, Anne H; Shulman, Stanford T; Davila, Sonia; Burgner, David; Breunis, Willemijn B; | Circulation. Cardiovascular genetics | 21127203 | 2011 Feb |
| GLay: community structure analysis of biological networks. | Su, Gang; Kuchinsky, Allan; Morris, John H; States, David J; Meng, Fan | Bioinformatics (Oxford, England) | 21123224 | 2010 Dec 15 |
| Anisotropy of transcallosal motor fibres indicates functional impairment in children with periventricular leukomalacia. | Koerte, Inga; Pelavin, Paula; Kirmess, Berit; Fuchs, Teresa; Berweck, Steffen; Laubender, Ruediger P; Borggraefe, Ingo; Schroeder, Sebastian; Danek, Adrian; Rummeny, Claudia; Reiser, Maximilian; Kubicki, Marek; Shenton, Martha E; Ertl-Wagner, Birgit; Hein | Developmental medicine and child neurology | 21121906 | 2011 Feb |
| Structural insights into pre-translocation ribosome motions. | Flores, Samuel Coulbourn; Altman, Russ | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 21121048 | 2011 |
| Molecular dynamics simulations of the full triple helical region of collagen type I provide an atomic scale view of the protein's regional heterogeneity. | Bodian, Dale L; Radmer, Randall J; Holbert, Sean; Klein, Teri E | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 21121047 | 2011 |
| Tubular surface segmentation for extracting anatomical structures from medical imagery. | Mohan, Vandana; Sundaramoorthi, Ganesh; Tannenbaum, Allen | IEEE transactions on medical imaging | 21118754 | 2010 Dec |
| MRI RESOLUTION ENHANCEMENT USING TOTAL VARIATION REGULARIZATION. | Joshi, Shantanu H; Marquina, Antonio; Osher, Stanley J; Dinov, Ivo; Van Horn, John D; Toga, Arthur W | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 21113426 | 2009 Aug 7 |
| Edge-Enhanced Image Reconstruction Using (TV) Total Variation and Bregman Refinement. | Joshi, Shantanu H; Marquina, Antonio; Osher, Stanley J; Dinov, Ivo; Van Horn, John D; Toga, Arthur W | Lecture notes in computer science | 21113387 | 2009 Jan 1 |
| Apolipoprotein E genotype is associated with temporal and hippocampal atrophy rates in healthy elderly adults: a tensor-based morphometry study. | Lu, Po H; Thompson, Paul M; Leow, Alex; Lee, Grace J; Lee, Agatha; Yanovsky, Igor; Parikshak, Neelroop; Khoo, Theresa; Wu, Stephanie; Geschwind, Daniel; Bartzokis, George | Journal of Alzheimer's disease : JAD | 21098974 | 2011 |
| A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder. | McEachin, Richard C; Chen, Haiming; Sartor, Maureen A; Saccone, Scott F; Keller, Benjamin J; Prossin, Alan R; Cavalcoli, James D; McInnis, Melvin G | BMC systems biology | 21092101 | 2010 |
| GSearcher: agile attribute querying for biological networks. | Su, Gang; Athey, Brian D; Meng, Fan | Bioinformatics (Oxford, England) | 21088028 | 2010 Dec 15 |
| Intrinsic Bayesian Active Contours for Extraction of Object Boundaries in Images. | Joshi, Shantanu H; Srivastava, Anuj | International journal of computer vision | 21076692 | 2009 Mar 1 |
| Diffeomorphic Sulcal Shape Analysis for Cortical Surface Registration. | Joshi, Shantanu H; Cabeen, Ryan P; Joshi, Anand A; Woods, Roger P; Narr, Katherine L; Toga, Arthur W | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 21076690 | 2010 Jun 1 |
| The generation of tetrahedral mesh models for neuroanatomical MRI. | Lederman, Carl; Joshi, Anand; Dinov, Ivo; Vese, Luminita; Toga, Arthur; Van Horn, John Darrell | NeuroImage | 21073968 | 2011 Mar 1 |
| POSTURE MATCHING AND ELASTIC REGISTRATION OF A MOUSE ATLAS TO SURFACE TOPOGRAPHY RANGE DATA. | Joshi, A A; Chaudhari, A J; Li, Changqing; Shattuck, D W; Dutta, J; Leahy, R M; Toga, A W | Proceedings. IEEE International Symposium on Biomedical Imaging. | 21072317 | 2009 Aug 7; |
| Effectiveness of lexico-syntactic pattern matching for ontology enrichment with clinical documents. | Liu, K; Chapman, W W; Savova, G; Chute, C G; Sioutos, N; Crowley, R S | Methods of information in medicine. | 21057720 | 2011; |
| An evolutionary approach to realism-based adverse event representations. | Ceusters, W; Capolupo, M; de Moor, G; Devlies, J; Smith, B | Methods of information in medicine | 21057717 | 2011 |
| A Computational Model of Multidimensional Shape. | Liu, Xiuwen; Shi, Yonggang; Dinov, Ivo; Mio, Washington | International journal of computer vision | 21057668 | 2010 Aug 1 |
| The association of plasma resistin with dietary sodium manipulation, the renin-angiotensin-aldosterone system, and 25-hydroxyvitamin D3 in human hypertension. | Vaidya, Anand; Pojoga, Luminita; Underwood, Patricia C; Forman, John P; Hopkins, Paul N; Williams, Gordon H; Williams, Jonathan S | Clinical endocrinology | 21050256 | 2011 Mar |
| Recent progress in automatically extracting information from the pharmacogenomic literature. | Garten, Yael; Coulet, Adrien; Altman, Russ B | Pharmacogenomics | 21047206 | 2010 Oct |
| Experimental approaches to the human renal transcriptome. | Hodgin, Jeffrey B; Cohen, Clemens D | Seminars in nephrology | 21044757 | 2010 Sep |
| Towards a framework for developing semantic relatedness reference standards. | Pakhomov, Serguei V S; Pedersen, Ted; McInnes, Bridget; Melton, Genevieve B; Ruggieri, Alexander; Chute, Christopher G | Journal of biomedical informatics. | 21044697 | 2011 Apr; |
| Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models. | Yang, Xinan; Lee, Younghee; Huang, Yong; Chen, James L; Xing, Rosie H; Lussier, Yves A | BMC bioinformatics | 21044358 | 2010 |
| Abnormal brain activation during working memory in children with prenatal exposure to drugs of abuse: the effects of methamphetamine, alcohol, and polydrug exposure. | Roussotte, Florence F; Bramen, Jennifer E; Nunez, S Christopher; Quandt, Lorna C; Smith, Lynne; O'Connor, Mary J; Bookheimer, Susan Y; Sowell, Elizabeth R | NeuroImage | 21040792 | 2011 Feb 14 |
| CONFU: Configuration Fuzzing Testing Framework for Software Vulnerability Detection. | Dai, Huning; Murphy, Christian; Kaiser, Gail | International journal of secure software engineering (Print) | 21037923 | 2010 |
| Thickness of the human cerebral cortex is associated with metrics of cerebrovascular health in a normative sample of community dwelling older adults. | Leritz, Elizabeth C; Salat, David H; Williams, Victoria J; Schnyer, David M; Rudolph, James L; Lipsitz, Lewis; Fischl, Bruce; McGlinchey, Regina E; Milberg, William P | NeuroImage | 21035552 | 2011 Feb 14 |
| Quantifying evolvability in small biological networks. | Mugler, A; Ziv, E; Nemenman, I; Wiggins, C H | IET systems biology | 21028928 | 2009 Sep |
| Literature-based discovery of diabetes- and ROS-related targets. | Hur, Junguk; Sullivan, Kelli A; Schuyler, Adam D; Hong, Yu; Pande, Manjusha; States, David J; Jagadish, H V; Feldman, Eva L | BMC medical genomics | 20979611 | 2010 |
| Structural, metabolic, and functional brain abnormalities as a result of prenatal exposure to drugs of abuse: evidence from neuroimaging. | Roussotte, Florence; Soderberg, Lindsay; Sowell, Elizabeth | Neuropsychology review | 20978945 | 2010 Dec |
| Adsorption of Block Copolymers from Selective Solvents on Curved Surfaces. | Hershkovits, Eli; Tannenbaum, Allen; Tannenbaum, Rina | Macromolecules | 20976029 | 2008 May 13 |
| Non-bulk-like solvent behavior in the ribosome exit tunnel. | Lucent, Del; Snow, Christopher D; Aitken, Colin Echeverria; Pande, Vijay S | PLoS computational biology | 20975935 | 2010 |
| Exprtarget: an integrative approach to predicting human microRNA targets. | Gamazon, Eric R; Im, Hae-Kyung; Duan, Shiwei; Lussier, Yves A; Cox, Nancy J; Dolan, M Eileen; Zhang, Wei | PloS one | 20975837 | 2010 |
| Visual exploration of high dimensional scalar functions. | Gerber, Samuel; Bremer, Peer-Timo; Pascucci, Valerio; Whitaker, Ross | IEEE transactions on visualization and computer graphics | 20975167 | 2010 Nov-Dec |
| Hippocampal degeneration is associated with temporal and limbic gray matter/white matter tissue contrast in Alzheimer's disease. | Salat, D H; Chen, J J; van der Kouwe, A J; Greve, D N; Fischl, B; Rosas, H D | NeuroImage | 20965261 | 2011 Feb 1 |
| The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. | Tenenbaum, Jessica D; Whetzel, Patricia L; Anderson, Kent; Borromeo, Charles D; Dinov, Ivo D; Gabriel, Davera; Kirschner, Beth; Mirel, Barbara; Morris, Tim; Noy, Natasha; Nyulas, Csongor; Rubenson, David; Saxman, Paul R; Singh, Harpreet; Whelan, Nancy; Wr | Journal of biomedical informatics | 20955817 | 2011 Feb |
| Structural neuroimaging in schizophrenia: from methods to insights to treatments. | Shenton, Martha E; Whitford, Thomas J; Kubicki, Marek | Dialogues in clinical neuroscience | 20954428 | 2010 |
| Differences in patellofemoral kinematics between weight-bearing and non-weight-bearing conditions in patients with patellofemoral pain. | Draper, Christine E; Besier, Thor F; Fredericson, Michael; Santos, Juan M; Beaupre, Gary S; Delp, Scott L; Gold, Garry E | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 20949442 | 2011 Mar |
| The Protein Ontology: a structured representation of protein forms and complexes. | Natale, Darren A; Arighi, Cecilia N; Barker, Winona C; Blake, Judith A; Bult, Carol J; Caudy, Michael; Drabkin, Harold J; D'Eustachio, Peter; Evsikov, Alexei V; Huang, Hongzhan; Nchoutmboube, Jules; Roberts, Natalia V; Smith, Barry; Zhang, Jian; Wu, Cathy H | Nucleic acids research. | 20935045 | 2011 Jan; |
| Regional gray matter correlates of perceived emotional intelligence. | Koven, Nancy S; Roth, Robert M; Garlinghouse, Matthew A; Flashman, Laura A; Saykin, Andrew J | Social cognitive and affective neuroscience | 20934987 | 2011 Oct |
| The link between callosal thickness and intelligence in healthy children and adolescents. | Luders, Eileen; Thompson, Paul M; Narr, Katherine L; Zamanyan, Alen; Chou, Yi-Yu; Gutman, Boris; Dinov, Ivo D; Toga, Arthur W | NeuroImage | 20932920 | 2011 Feb 1 |
| Phase II study of neoadjuvant bevacizumab and radiotherapy for resectable soft tissue sarcomas. | Yoon, Sam S; Duda, Dan G; Karl, Daniel L; Kim, Tae-Min; Kambadakone, Avinash R; Chen, Yen-Lin; Rothrock, Courtney; Rosenberg, Andrew E; Nielsen, G Petur; Kirsch, David G; Choy, Edwin; Harmon, David C; Hornicek, Francis J; Dreyfuss, Jonathan; Ancukiewicz, | International journal of radiation oncology, biology, physics | 20932656 | 2011 Nov 15 |
| Neuroimaging study designs, computational analyses and data provenance using the LONI pipeline. | Dinov, Ivo; Lozev, Kamen; Petrosyan, Petros; Liu, Zhizhong; Eggert, Paul; Pierce, Jonathan; Zamanyan, Alen; Chakrapani, Shruthi; Van Horn, John; Parker, D Stott; Magsipoc, Rico; Leung, Kelvin; Gutman, Boris; Woods, Roger; Toga, Arthur | PloS one | 20927408 | 2010 |
| A web-based brain atlas of the vervet monkey, Chlorocebus aethiops. | Woods, Roger P; Fears, Scott C; Jorgensen, Matthew J; Fairbanks, Lynn A; Toga, Arthur W; Freimer, Nelson B | NeuroImage | 20923706 | 2011 Feb 1 |
| A potential role for intragenic miRNAs on their hosts' interactome. | Hinske, Ludwig Christian G; Galante, Pedro A F; Kuo, Winston P; Ohno-Machado, Lucila | BMC genomics | 20920310 | 2010 |
| The rate of the molecular clock and the cost of gratuitous protein synthesis. | Plata, German; Gottesman, Max E; Vitkup, Dennis | Genome biology | 20920270 | 2010 |
| Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. | Filion, Guillaume J; van Bemmel, Joke G; Braunschweig, Ulrich; Talhout, Wendy; Kind, Jop; Ward, Lucas D; Brugman, Wim; de Castro, Ines J; Kerkhoven, Ron M; Bussemaker, Harmen J; van Steensel, Bas | Cell | 20888037 | 2010 Oct 15 |
| Topographical relationships between arcuate fasciculus connectivity and cortical thickness. | Phillips, Owen R; Clark, Kristi A; Woods, Roger P; Subotnik, Kenneth L; Asarnow, Robert F; Nuechterlein, Keith H; Toga, Arthur W; Narr, Katherine L | Human brain mapping | 20886580 | 2011 Nov |
| DigiWarp: a method for deformable mouse atlas warping to surface topographic data. | Joshi, Anand A; Chaudhari, Abhijit J; Li, Changqing; Dutta, Joyita; Cherry, Simon R; Shattuck, David W; Toga, Arthur W; Leahy, Richard M | Physics in medicine and biology | 20885019 | 2010 Oct 21 |
| Ontology and the future of dental research informatics. | Smith, Barry; Goldberg, Louis J; Ruttenberg, Alan; Glick, Michael | Journal of the American Dental Association (1939). | 20884915 | 2010 Oct; |
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| Agreement-based semi-supervised learning for skull stripping. | Iglesias, Juan Eugenio; Liu, Cheng-Yi; Thompson, Paul; Tu, Zhuowen | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20879394 | 2010 |
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| Automated sulci identification via intrinsic modeling of cortical anatomy. | Shi, Yonggang; Sun, Bo; Lai, Rongjie; Dinov, Ivo; Toga, Arthur W | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20879382 | 2010 |
| Image registration driven by combined probabilistic and geometric descriptors. | Ha, Linh; Prastawa, Marcel; Gerig, Guido; Gilmore, John H; Silva, Claudio T; Joshi, Sarang | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 20879365 | 2010; |
| Summarizing and visualizing uncertainty in non-rigid registration. | Risholm, Petter; Pieper, Steve; Samset, Eigil; Wells 3rd, William M | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20879359 | 2010 |
| Shape-based diffeomorphic registration on hippocampal surfaces using Beltrami holomorphic flow. | Lui, Lok Ming; Wong, Tsz Wai; Thompson, Paul; Chan, Tony; Gu, Xianfeng; Yau, Shing-Tung | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20879331 | 2010 |
| A geometry-based particle filtering approach to white matter tractography. | Savadjiev, Peter; Rathi, Yogesh; Malcolm, James G; Shenton, Martha E; Westin, Carl-Fredrik | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20879320 | 2010 |
| A generative model for brain tumor segmentation in multi-modal images. | Menze, Bjoern H; Van Leemput, Koen; Lashkari, Danial; Weber, Marc-Andre; Ayache, Nicholas; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20879310 | 2010 |
| Multivariate varying coefficient models for DTI tract statistics. | Zhu, Hongtu; Styner, Martin; Li, Yimei; Kong, Linglong; Shi, Yundi; Lin, Weili; Coe, Christopher; Gilmore, John H | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20879291 | 2010 |
| Biomarkers for identifying first-episode schizophrenia patients using diffusion weighted imaging. | Rathi, Yogesh; Malcolm, James; Michailovich, Oleg; Goldstein, Jill; Seidman, Larry; McCarley, Robert W; Westin, Carl-Fredrik; Shenton, Martha E | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 20879287 | 2010; |
| Cortical sulcal atlas construction using a diffeomorphic mapping approach. | Joshi, Shantanu H; Cabeen, Ryan P; Sun, Bo; Joshi, Anand A; Gutman, Boris; Zamanyan, Alen; Chakrapani, Shruthi; Dinov, Ivo; Woods, Roger P; Toga, Arthur W | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 20879251 | 2010; |
| Joint generative model for fMRI/DWI and its application to population studies. | Venkataraman, Archana; Rathi, Yogesh; Kubicki, Marek; Westin, Carl-Fredrik; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20879231 | 2010 |
| A role for coding functional variants in HNF4A in type 2 diabetes susceptibility. | Jafar-Mohammadi, B; Groves, C J; Gjesing, A P; Herrera, B M; Winckler, W; Stringham, H M; Morris, A P; Lauritzen, T; Doney, A S F; Morris, A D; Weedon, M N; Swift, A J; Kuusisto, J; Laakso, M; Altshuler, D; Hattersley, A T; Collins, F S; Boehnke, M; Hanse | Diabetologia | 20878384 | 2011 Jan |
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| RAPID detection of gene-gene interactions in genome-wide association studies. | Brinza, Dumitru; Schultz, Matthew; Tesler, Glenn; Bafna, Vineet | Bioinformatics (Oxford, England) | 20871107 | 2010 Nov 15 |
| Identifying the genetic determinants of transcription factor activity. | Lee, Eunjee; Bussemaker, Harmen J | Molecular systems biology | 20865005 | 2010 Sep 21 |
| A molecular profile of focal segmental glomerulosclerosis from formalin-fixed, paraffin-embedded tissue. | Hodgin, Jeffrey B; Borczuk, Alain C; Nasr, Samih H; Markowitz, Glen S; Nair, Viji; Martini, Sebastian; Eichinger, Felix; Vining, Courtenay; Berthier, Celine C; Kretzler, Matthias; D'Agati, Vivette D | The American journal of pathology | 20847290 | 2010 Oct |
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| Effects of ApoE4 and maternal history of dementia on hippocampal atrophy. | Andrawis, John P; Hwang, Kristy S; Green, Amity E; Kotlerman, Jenny; Elashoff, David; Morra, Jonathan H; Cummings, Jeffrey L; Toga, Arthur W; Thompson, Paul M; Apostolova, Liana G | Neurobiology of aging | 20833446 | 2012 May |
| Hierarchical evolution of the bacterial sporulation network. | de Hoon, Michiel J L; Eichenberger, Patrick; Vitkup, Dennis | Current biology : CB | 20833318 | 2010 Sep 14 |
| The BioPAX community standard for pathway data sharing. | Demir, Emek; Cary, Michael P; Paley, Suzanne; Fukuda, Ken; Lemer, Christian; Vastrik, Imre; Wu, Guanming; D'Eustachio, Peter; Schaefer, Carl; Luciano, Joanne; Schacherer, Frank; Martinez-Flores, Irma; Hu, Zhenjun; Jimenez-Jacinto, Veronica; Joshi-Tope, Ge | Nature biotechnology. | 20829833 | 2010 Sep; |
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| Gray matter volume reduction in rostral middle frontal gyrus in patients with chronic schizophrenia. | Kikinis, Z; Fallon, J H; Niznikiewicz, M; Nestor, P; Davidson, C; Bobrow, L; Pelavin, P E; Fischl, B; Yendiki, A; McCarley, R W; Kikinis, R; Kubicki, M; Shenton, M E | Schizophrenia research | 20822884 | 2010 Nov |
| The genetics of insulin resistance: Where's Waldo? | Watanabe, Richard M | Current diabetes reports | 20820957 | 2010 Dec |
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| Textractor: a hybrid system for medications and reason for their prescription extraction from clinical text documents. | Meystre, Stephane M; Thibault, Julien; Shen, Shuying; Hurdle, John F; South, Brett R | Journal of the American Medical Informatics Association : JAMIA | 20819864 | 2010 Sep-Oct |
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| Automatic extraction of medication information from medical discharge summaries. | Yang, Hui | Journal of the American Medical Informatics Association : JAMIA | 20819861 | 2010 Sep-Oct |
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| Extracting Rx information from clinical narrative. | Mork, James G; Bodenreider, Olivier; Demner-Fushman, Dina; Dogan, Rezarta Islamaj; Lang, Francois-Michel; Lu, Zhiyong; Neveol, Aurelie; Peters, Lee; Shooshan, Sonya E; Aronson, Alan R | Journal of the American Medical Informatics Association : JAMIA | 20819859 | 2010 Sep-Oct |
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| Integrating existing natural language processing tools for medication extraction from discharge summaries. | Doan, Son; Bastarache, Lisa; Klimkowski, Sergio; Denny, Joshua C; Xu, Hua | Journal of the American Medical Informatics Association : JAMIA | 20819857 | 2010 Sep-Oct |
| High accuracy information extraction of medication information from clinical notes: 2009 i2b2 medication extraction challenge. | Patrick, Jon; Li, Min | Journal of the American Medical Informatics Association : JAMIA | 20819856 | 2010 Sep-Oct |
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| Multimodality non-rigid image registration for planning, targeting and monitoring during CT-guided percutaneous liver tumor cryoablation. | Elhawary, Haytham; Oguro, Sota; Tuncali, Kemal; Morrison, Paul R; Tatli, Servet; Shyn, Paul B; Silverman, Stuart G; Hata, Nobuhiko | Academic radiology | 20817574 | 2010 Nov |
| The contributions of disease and genetic factors towards regional cortical thinning in schizophrenia: the UCLA family study. | Yang, Yaling; Nuechterlein, Keith H; Phillips, Owen; Hamilton, Liberty S; Subotnik, Kenneth L; Asarnow, Robert F; Toga, Arthur W; Narr, Katherine L | Schizophrenia research | 20817413 | 2010 Nov |
| Three-dimensional surgical simulation. | Cevidanes, Lucia H C; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael | American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics. | 20816308 | 2010 Sep; |
| Nonparametric Mixture Models for Supervised Image Parcellation. | Sabuncu, Mert R; Yeo, B T Thomas; Van Leemput, Koen; Fischl, Bruce; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20814584 | 2009 Sep 1 |
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| HARDI DATA DENOISING USING VECTORIAL TOTAL VARIATION AND LOGARITHMIC BARRIER. | Kim, Yunho; Thompson, Paul M; Vese, Luminita A | Inverse problems and imaging (Springfield, Mo.) | 20802839 | 2010 May 1 |
| RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. | Huang, Xuhui; Wang, Dong; Weiss, Dahlia R; Bushnell, David A; Kornberg, Roger D; Levitt, Michael | Proceedings of the National Academy of Sciences of the United States of America | 20798057 | 2010 Sep 7 |
| A nonrigid kernel-based framework for 2D-3D pose estimation and 2D image segmentation. | Sandhu, Romeil; Dambreville, Samuel; Yezzi, Anthony; Tannenbaum, Allen | IEEE transactions on pattern analysis and machine intelligence | 20733218 | 2011 Jun |
| Auto-context and its application to high-level vision tasks and 3D brain image segmentation. | Tu, Zhuowen; Bai, Xiang | IEEE transactions on pattern analysis and machine intelligence | 20724753 | 2010 Oct |
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| The development of the corpus callosum in the healthy human brain. | Luders, Eileen; Thompson, Paul M; Toga, Arthur W | The Journal of neuroscience : the official journal of the Society for Neuroscience | 20720105 | 2010 Aug 18 |
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| A systems biology approach identifies inflammatory abnormalities between mouse strains prior to development of metabolic disease. | Mori, Marcelo A; Liu, Manway; Bezy, Olivier; Almind, Katrine; Shapiro, Hagit; Kasif, Simon; Kahn, C Ronald | Diabetes | 20713682 | 2010 Nov |
| Puberty influences medial temporal lobe and cortical gray matter maturation differently in boys than girls matched for sexual maturity. | Bramen, Jennifer E; Hranilovich, Jennifer A; Dahl, Ronald E; Forbes, Erika E; Chen, Jessica; Toga, Arthur W; Dinov, Ivo D; Worthman, Carol M; Sowell, Elizabeth R | Cerebral cortex (New York, N.Y. : 1991) | 20713504 | 2011 Mar |
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| Age-related changes in the corpus callosum in early-onset bipolar disorder assessed using volumetric and cross-sectional measurements. | Lopez-Larson, Melissa; Breeze, Janis L; Kennedy, David N; Hodge, Steven M; Tang, Lena; Moore, Constance; Giuliano, Anthony J; Makris, Nikos; Caviness, Verne S; Frazier, Jean A | Brain imaging and behavior | 20686873 | 2010 Dec |
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| Abraham's children in the genome era: major Jewish diaspora populations comprise distinct genetic clusters with shared Middle Eastern Ancestry. | Atzmon, Gil; Hao, Li; Pe'er, Itsik; Velez, Christopher; Pearlman, Alexander; Palamara, Pier Francesco; Morrow, Bernice; Friedman, Eitan; Oddoux, Carole; Burns, Edward; Ostrer, Harry | American journal of human genetics | 20560205 | 2010 Jun 11 |
| Deep depletion of abundant serum proteins reveals low-abundant proteins as potential biomarkers for human ovarian cancer. | Lin, Biaoyang; White, James T; Wu, Jian; Lele, Shashikant; Old, Lloyd J; Hood, Leroy; Odunsi, Kunle | Proteomics. Clinical applications | 20559449 | 2009 Jul 1 |
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| Relationship Between White Matter Integrity, Attention, and Memory in Schizophrenia: A Diffusion Tensor Imaging Study. | Kubicki, Marek; Niznikiewicz, Margaret; Connor, Elizabeth; Nestor, Paul; Bouix, Sylvain; Dreusicke, Mark; Kikinis, Ron; McCarley, Robert; Shenton, Martha | Brain imaging and behavior | 20556231 | 2009 Jun 1 |
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| A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers. | Lefebvre, Celine; Rajbhandari, Presha; Alvarez, Mariano J; Bandaru, Pradeep; Lim, Wei Keat; Sato, Mai; Wang, Kai; Sumazin, Pavel; Kustagi, Manjunath; Bisikirska, Brygida C; Basso, Katia; Beltrao, Pedro; Krogan, Nevan; Gautier, Jean; Dalla-Favera, Riccardo | Molecular systems biology | 20531406 | 2010 Jun 8 |
| MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structures. | Saha, Mitul; Levitt, Michael; Chiu, Wah | Bioinformatics (Oxford, England) | 20529921 | 2010 Jun 15 |
| Learning task-optimal registration cost functions for localizing cytoarchitecture and function in the cerebral cortex. | Yeo, B T Thomas; Sabuncu, Mert R; Vercauteren, Tom; Holt, Daphne J; Amunts, Katrin; Zilles, Karl; Golland, Polina; Fischl, Bruce | IEEE transactions on medical imaging | 20529736 | 2010 Jul |
| A coupled global registration and segmentation framework with application to magnetic resonance prostate imagery. | Gao, Yi; Sandhu, Romeil; Fichtinger, Gabor; Tannenbaum, Allen Robert | IEEE transactions on medical imaging | 20529727 | 2010 Oct |
| Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma. | Palanisamy, Nallasivam; Ateeq, Bushra; Kalyana-Sundaram, Shanker; Pflueger, Dorothee; Ramnarayanan, Kalpana; Shankar, Sunita; Han, Bo; Cao, Qi; Cao, Xuhong; Suleman, Khalid; Kumar-Sinha, Chandan; Dhanasekaran, Saravana M; Chen, Ying-bei; Esgueva, Raquel; | Nature medicine | 20526349 | 2010 Jul |
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| geWorkbench: an open source platform for integrative genomics. | Floratos, Aris; Smith, Kenneth; Ji, Zhou; Watkinson, John; Califano, Andrea | Bioinformatics (Oxford, England) | 20511363 | 2010 Jul 15 |
| A UIMA wrapper for the NCBO annotator. | Roeder, Christophe; Jonquet, Clement; Shah, Nigam H; Baumgartner Jr, William A; Verspoor, Karin; Hunter, Lawrence | Bioinformatics (Oxford, England) | 20505005 | 2010 Jul 15 |
| Image registration of pre-procedural MRI and intra-procedural CT images to aid CT-guided percutaneous cryoablation of renal tumors. | Oguro, Sota; Tuncali, Kemal; Elhawary, Haytham; Morrison, Paul R; Hata, Nobuhiko; Silverman, Stuart G | International journal of computer assisted radiology and surgery | 20499194 | 2011 Jan |
| Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. | Pantazatos, Spiro P; Li, Jianrong; Pavlidis, Paul; Lussier, Yves A | Cancer informatics | 20495688 | 2009 Jun 8 |
| Corpus callosum abnormalities and their association with psychotic symptoms in patients with schizophrenia. | Whitford, Thomas J; Kubicki, Marek; Schneiderman, Jason S; O'Donnell, Lauren J; King, Rebecca; Alvarado, Jorge L; Khan, Usman; Markant, Douglas; Nestor, Paul G; Niznikiewicz, Margaret; McCarley, Robert W; Westin, Carl-Fredrik; Shenton, Martha E | Biological psychiatry | 20494336 | 2010 Jul 1 |
| Muscle contributions to support and progression during single-limb stance in crouch gait. | Steele, Katherine M; Seth, Ajay; Hicks, Jennifer L; Schwartz, Michael S; Delp, Scott L | Journal of biomechanics | 20493489 | 2010 Aug 10 |
| Current methodologies for translational bioinformatics. | Lussier, Yves A; Butte, Atul J; Hunter, Lawrence | Journal of biomedical informatics | 20470899 | 2010 Jun |
| Genetic pathway-based hierarchical clustering analysis of older adults with cognitive complaints and amnestic mild cognitive impairment using clinical and neuroimaging phenotypes. | Sloan, Chantel D; Shen, Li; West, John D; Wishart, Heather A; Flashman, Laura A; Rabin, Laura A; Santulli, Robert B; Guerin, Stephen J; Rhodes, C Harker; Tsongalis, Gregory J; McAllister, Thomas W; Ahles, Tim A; Lee, Stephen L; Moore, Jason H; Saykin, And | American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics | 20468060 | 2010 Jul |
| Mining the mind research network: a novel framework for exploring large scale, heterogeneous translational neuroscience research data sources. | Bockholt, Henry J; Scully, Mark; Courtney, William; Rachakonda, Srinivas; Scott, Adam; Caprihan, Arvind; Fries, Jill; Kalyanam, Ravi; Segall, Judith M; de la Garza, Raul; Lane, Susan; Calhoun, Vince D | Frontiers in neuroinformatics. | 20461147 | 2010; |
| Learning ''graph-mer'' motifs that predict gene expression trajectories in development. | Li, Xuejing; Panea, Casandra; Wiggins, Chris H; Reinke, Valerie; Leslie, Christina | PLoS computational biology. | 20454681 | 2010 Apr 29; |
| Comparison of manual and automated determination of hippocampal volumes in MCI and early AD. | Shen, Li; Saykin, Andrew J; Kim, Sungeun; Firpi, Hiram A; West, John D; Risacher, Shannon L; McDonald, Brenna C; McHugh, Tara L; Wishart, Heather A; Flashman, Laura A | Brain imaging and behavior | 20454594 | 2010 Mar |
| Charge, hydrophobicity, and confined water: putting past simulations into a simple theoretical framework. | England, Jeremy L; Pande, Vijay S | Biochemistry and cell biology = Biochimie et biologie cellulaire | 20453936 | 2010 Apr |
| The informatics core of the Alzheimer's Disease Neuroimaging Initiative. | Toga, Arthur W; Crawford, Karen L; Alzheimer's Disease Neuroimaging Initiative | Alzheimer's & dementia : the journal of the Alzheimer's Association | 20451873 | 2010 May |
| Consistency Clustering: A Robust Algorithm for Group-wise Registration, Segmentation and Automatic Atlas Construction in Diffusion MRI. | Ziyan, Ulas; Sabuncu, Mert R; Grimson, W Eric L; Westin, Carl-Fredrik | International journal of computer vision | 20442792 | 2009 |
| The ACGT Master Ontology and its applications--towards an ontology-driven cancer research and management system. | Brochhausen, Mathias; Spear, Andrew D; Cocos, Cristian; Weiler, Gabriele; Martín, Luis; Anguita, Alberto; Stenzhorn, Holger; Daskalaki, Evangelia; Schera, Fatima; Schwarz, Ulf; Sfakianakis, Stelios; Kiefer, Stephan; Dörr, Martin; Graf, Norbert; Tsiknakis, Manolis | Journal of biomedical informatics. | 20438862 | 2011 Feb; |
| Hippocampal, caudate, and ventricular changes in Parkinson's disease with and without dementia. | Apostolova, Liana G; Beyer, Mona; Green, Amity E; Hwang, Kristy S; Morra, Jonathan H; Chou, Yi-Yu; Avedissian, Christina; Aarsland, Dag; Janvin, Carmen C; Larsen, Jan P; Cummings, Jeffrey L; Thompson, Paul M | Movement disorders : official journal of the Movement Disorder Society | 20437538 | 2010 Apr 30 |
| DSGeo: software tools for cross-platform analysis of gene expression data in GEO. | Lacson, Ronilda; Pitzer, Erik; Kim, Jihoon; Galante, Pedro; Hinske, Christian; Ohno-Machado, Lucila | Journal of biomedical informatics | 20435161 | 2010 Oct |
| Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data. | Yang, Xinan; Huang, Yong; Crowson, Matthew; Li, Jianrong; Maitland, Michael L; Lussier, Yves A | Journal of biomedical informatics | 20434586 | 2010 Jun |
| A supermatrix-based molecular phylogeny of the family Drosophilidae. | van der Linde, Kim; Houle, David; Spicer, Greg S; Steppan, Scott J | Genetics research | 20433773 | 2010 Feb |
| An information-theoretic derivation of min-cut-based clustering. | Raj, Anil; Wiggins, Chris H | IEEE transactions on pattern analysis and machine intelligence | 20431126 | 2010 Jun |
| WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis. | Mo, Fan; Mo, Qun; Chen, Yuanyuan; Goodlett, David R; Hood, Leroy; Omenn, Gilbert S; Li, Song; Lin, Biaoyang | BMC bioinformatics | 20429928 | 2010 |
| An Automated Method for Segmenting White Matter Lesions through Multi-Level Morphometric Feature Classification with Application to Lupus. | Scully, Mark; Anderson, Blake; Lane, Terran; Gasparovic, Charles; Magnotta, Vince; Sibbitt, Wilmer; Roldan, Carlos; Kikinis, Ron; Bockholt, Henry J | Frontiers in human neuroscience. | 20428508 | 2010; |
| Coarse-Grained Structural Modeling of Molecular Motors Using Multibody Dynamics. | Parker, David; Bryant, Zev; Delp, Scott L | Cellular and molecular bioengineering | 20428469 | 2009 Sep 1 |
| Supervised nonparametric image parcellation. | Sabuncu, Mert R; Yeo, B T Thomas; Van Leemput, Koen; Fischl, Bruce; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426218 | 2009 |
| Atlas-based improved prediction of magnetic field inhomogeneity for distortion correction of EPI data. | Poynton, Clare; Jenkinson, Mark; Wells 3rd, William | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426203 | 2009 |
| Lossless online ensemble learning (LOEL) and its application to subcortical segmentation. | Morra, Jonathan H; Tu, Zhuowen; Toga, Arthur W; Thompson, Paul M | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426141 | 2009 |
| Cortical shape analysis in the Laplace-Beltrami feature space. | Shi, Yonggang; Dinov, Ivo; Toga, Arthur W | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426114 | 2009 |
| Intrinsic regression models for manifold-valued data. | Shi, Xiaoyan; Styner, Martin; Lieberman, Jeffrey; Ibrahim, Joseph G; Lin, Weili; Zhu, Hongtu | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426112 | 2009 |
| Particle based shape regression of open surfaces with applications to developmental neuroimaging. | Datar, Manasi; Cates, Joshua; Fletcher, P Thomas; Gouttard, Sylvain; Gerig, Guido; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426109 | 2009 |
| Teichmoller shape space theory and its application to brain morphometry. | Wang, Yalin; Dai, Wei; Gu, Xianfeng; Chan, Tony F; Yau, Shing-Tung; Toga, Arthur W; Thompson, Paul M | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426105 | 2009 |
| Modeling adaptation effects in fMRI analysis. | Ou, Wanmei; Raij, Tommi; Lin, Fa-Hsuan; Golland, Polina; Hamalainen, Matti | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426087 | 2009 |
| Two-tensor tractography using a constrained filter. | Malcolm, James G; Shenton, Martha E; Rathi, Yogesh | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426073 | 2009 |
| Task-optimal registration cost functions. | Yeo, B T Thomas; Sabuncu, Mert; Golland, Polina; Fischl, Bruce | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426037 | 2009 |
| Asymmetric image-template registration. | Sabuncu, Mert R; Yeo, B T Thomas; Van Leemput, Koen; Vercauteren, Tom; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426033 | 2009 |
| Local white matter geometry indices from diffusion tensor gradients. | Savadjiev, Peter; Kindlmann, Gordon; Bouix, Sylvain; Shenton, Martha E; Westin, Carl-Fredrik | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426006 | 2009 |
| Multivariate tensor-based brain anatomical surface morphometry via holomorphic one-forms. | Wang, Yalin; Chan, Tony F; Toga, Arthur W; Thompson, Paul M | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426005 | 2009 |
| Constrained data decomposition and regression for analyzing healthy aging from fiber tract diffusion properties. | Gouttard, Sylvain; Prastawa, Marcel; Bullitt, Elizabeth; Lin, Weili; Goodlett, Casey; Gerig, Guido | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426003 | 2009 |
| On the manifold structure of the space of brain images. | Gerber, Samuel; Tasdizen, Tolga; Joshi, Sarang; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426001 | 2009 |
| Spatiotemporal atlas estimation for developmental delay detection in longitudinal datasets. | Durrleman, Stanley; Pennec, Xavier; Trouve, Alain; Gerig, Guido; Ayache, Nicholas | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20426000 | 2009 |
| Joint segmentation of image ensembles via latent atlases. | Raviv, Tammy Riklin; Van Leemput, Koen; Wells 3rd, William M; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20425997 | 2009 |
| Network models for molecular kinetics and their initial applications to human health. | Bowman, Gregory R; Huang, Xuhui; Pande, Vijay S | Cell research | 20421891 | 2010 Jun |
| Automatic Segmentation Using Non-Rigid Registration. | Pohl, Kilian M; Bouix, Sylvain; Shenton, Martha E; Grimson, W Eric L; Kikinis, Ron | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20407623 | 2007 |
| Broadly heterogeneous activation of the master regulator for sporulation in Bacillus subtilis. | Chastanet, Arnaud; Vitkup, Dennis; Yuan, Guo-Cheng; Norman, Thomas M; Liu, Jun S; Losick, Richard M | Proceedings of the National Academy of Sciences of the United States of America | 20404177 | 2010 May 4 |
| Prediction of Successful Memory Encoding from fMRI Data. | Balci, S K; Sabuncu, M R; Yoo, J; Ghosh, S S; Whitfield-Gabrieli, S; Gabrieli, J D E; Golland, P | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20401334 | 2008 Sep 1 |
| JISTIC: identification of significant targets in cancer. | Sanchez-Garcia, Felix; Akavia, Uri David; Mozes, Eyal; Pe'er, Dana | BMC bioinformatics | 20398270 | 2010 |
| When more is less: associations between corpus callosum size and handedness lateralization. | Luders, Eileen; Cherbuin, Nicolas; Thompson, Paul M; Gutman, Boris; Anstey, Kaarin J; Sachdev, Perminder; Toga, Arthur W | NeuroImage | 20394828 | 2010 Aug 1 |
| Subregional hippocampal deformations in major depressive disorder. | Cole, James; Toga, Arthur W; Hojatkashani, Cornelius; Thompson, Paul; Costafreda, Sergi G; Cleare, Anthony J; Williams, Steven C R; Bullmore, Edward T; Scott, Jan L; Mitterschiffthaler, Martina T; Walsh, Nicholas D; Donaldson, Catherine; Mirza, Mubeena; M | Journal of affective disorders | 20392498 | 2010 Oct |
| Adapting Clinical Ontologies in Real-World Environments. | Stenzhorn, Holger; Schulz, Stefan; Boeker, Martin; Smith, Barry | Journal of universal computer science : J. UCS | 20390048 | 2008 |
| Proteomic characterization of novel alternative splice variant proteins in human epidermal growth factor receptor 2/neu-induced breast cancers. | Menon, Rajasree; Omenn, Gilbert S | Cancer research | 20388783 | 2010 May 1 |
| Reduced lean mass in early Alzheimer disease and its association with brain atrophy. | Burns, Jeffrey M; Johnson, David K; Watts, Amber; Swerdlow, Russell H; Brooks, William M | Archives of neurology | 20385908 | 2010 Apr |
| High-throughput computational structure-based characterization of protein families: START domains and implications for structural genomics. | Lee, Hunjoong; Li, Zhaohui; Silkov, Antonina; Fischer, Markus; Petrey, Donald; Honig, Barry; Murray, Diana | Journal of structural and functional genomics | 20383749 | 2010 Mar |
| Quantification of condylar resorption in temporomandibular joint osteoarthritis. | Cevidanes, L H S; Hajati, A-K; Paniagua, B; Lim, P F; Walker, D G; Palconet, G; Nackley, A G; Styner, M; Ludlow, J B; Zhu, H; Phillips, C | Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics. | 20382043 | 2010 Jul; |
| Three-dimensional assessment of mandibular advancement 1 year after surgery. | Carvalho, Felipe de Assis Ribeiro; Cevidanes, Lucia Helena Soares; da Motta, Alexandre Trindade Simões; Almeida, Marco Antonio de Oliveira; Phillips, Ceib | American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics. | 20381760 | 2010 Apr; |
| Cranial base superimposition for 3-dimensional evaluation of soft-tissue changes. | Cevidanes, Lucia H C; Motta, Alexandre; Proffit, William R; Ackerman, James L; Styner, Martin | American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics. | 20381752 | 2010 Apr; |
| Variation of hamstrings lengths and velocities with walking speed. | Agarwal-Harding, Kiran J; Schwartz, Michael H; Delp, Scott L | Journal of biomechanics | 20381047 | 2010 May 28 |
| Super-resolution biomolecular crystallography with low-resolution data. | Schroder, Gunnar F; Levitt, Michael; Brunger, Axel T | Nature | 20376006 | 2010 Apr 22 |
| Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. | Lee, Younghee; Yang, Xinan; Huang, Yong; Fan, Hanli; Zhang, Qingbei; Wu, Youngfei; Li, Jianrong; Hasina, Rifat; Cheng, Chao; Lingen, Mark W; Gerstein, Mark B; Weichselbaum, Ralph R; Xing, H Rosie; Lussier, Yves A | PLoS computational biology | 20369013 | 2010 Apr |
| Trajectory control of PbSe-gamma-Fe2O3 nanoplatforms under viscous flow and an external magnetic field. | Etgar, Lioz; Nakhmani, Arie; Tannenbaum, Allen; Lifshitz, Efrat; Tannenbaum, Rina | Nanotechnology | 20368678 | 2010 Apr 30 |
| Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs. | Kitayner, Malka; Rozenberg, Haim; Rohs, Remo; Suad, Oded; Rabinovich, Dov; Honig, Barry; Shakked, Zippora | Nature structural & molecular biology | 20364130 | 2010 Apr |
| Heritability of brain ventricle volume: converging evidence from inconsistent results. | Kremen, William S; Panizzon, Matthew S; Neale, Michael C; Fennema-Notestine, Christine; Prom-Wormley, Elizabeth; Eyler, Lisa T; Stevens, Allison; Franz, Carol E; Lyons, Michael J; Grant, Michael D; Jak, Amy J; Jernigan, Terry L; Xian, Hong; Fischl, Bruce; | Neurobiology of aging | 20363053 | 2012 Jan |
| Age-related decline in white matter tract integrity and cognitive performance: a DTI tractography and structural equation modeling study. | Voineskos, Aristotle N; Rajji, Tarek K; Lobaugh, Nancy J; Miranda, Dielle; Shenton, Martha E; Kennedy, James L; Pollock, Bruce G; Mulsant, Benoit H | Neurobiology of aging | 20363050 | 2012 Jan |
| Combining spatial priors and anatomical information for fMRI detection. | Ou, Wanmei; Wells 3rd, William M; Golland, Polina | Medical image analysis. | 20362488 | 2010 Jun; |
| A systems biology approach to transcription factor binding site prediction. | Zhou, Xiang; Sumazin, Pavel; Rajbhandari, Presha; Califano, Andrea | PloS one | 20360861 | 2010 |
| ProteomeCommons.org collaborative annotation and project management resource integrated with the Tranche repository. | Hill, James A; Smith, Bryan E; Papoulias, Panagiotis G; Andrews, Philip C | Journal of proteome research | 20356086 | 2010 Jun 4 |
| A clinical use case to evaluate the i2b2 Hive: predicting asthma exacerbations. | Meystre, Stephane M; Deshmukh, Vikrant G; Mitchell, Joyce | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 20351896 | 2009 |
| Creating mappings for ontologies in biomedicine: simple methods work. | Ghazvinian, Amir; Noy, Natalya F; Musen, Mark A | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 20351849 | 2009 |
| Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. | Chen, James; Sam, Lee; Huang, Yong; Lee, Younghee; Li, Jianrong; Liu, Yang; Xing, H Rosie; Lussier, Yves A | Journal of biomedical informatics | 20350617 | 2010 Jun |
| Novel opportunities for computational biology and sociology in drug discovery. | Yao, Lixia; Evans, James A; Rzhetsky, Andrey | Trends in biotechnology | 20349528 | 2010 Apr |
| Linking variants from genome-wide association analysis to function via transcriptional network analysis. | Keller, Benjamin; Martini, Sebastian; Sedor, John; Kretzler, Matthias | Seminars in nephrology | 20347646 | 2010 Mar |
| VARIABLE SELECTION FOR REGRESSION MODELS WITH MISSING DATA. | Garcia, Ramon I; Ibrahim, Joseph G; Zhu, Hongtu | Statistica Sinica | 20336190 | 2010 Jan |
| FRATS: Functional Regression Analysis of DTI Tract Statistics. | Zhu, Hongtu; Styner, Martin; Tang, Niansheng; Liu, Zhexing; Lin, Weili; Gilmore, John H | IEEE transactions on medical imaging | 20335089 | 2010 Apr |
| Origins of specificity in protein-DNA recognition. | Rohs, Remo; Jin, Xiangshu; West, Sean M; Joshi, Rohit; Honig, Barry; Mann, Richard S | Annual review of biochemistry | 20334529 | 2010 |
| A Bayesian mixture approach to modeling spatial activation patterns in multisite fMRI data. | Kim, Seyoung; Smyth, Padhraic; Stern, Hal | IEEE transactions on medical imaging | 20304727 | 2010 Jun |
| Subjective rating of working memory is associated with frontal lobe volume in schizophrenia. | Garlinghouse, Matthew A; Roth, Robert M; Isquith, Peter K; Flashman, Laura A; Saykin, Andrew J | Schizophrenia research | 20303715 | 2010 Jul |
| Learning context-sensitive shape similarity by graph transduction. | Bai, Xiang; Yang, Xingwei; Latecki, Longin Jan; Liu, Wenyu; Tu, Zhuowen | IEEE transactions on pattern analysis and machine intelligence | 20299710 | 2010 May |
| Differentiating prenatal exposure to methamphetamine and alcohol versus alcohol and not methamphetamine using tensor-based brain morphometry and discriminant analysis. | Sowell, Elizabeth R; Leow, Alex D; Bookheimer, Susan Y; Smith, Lynne M; O'Connor, Mary J; Kan, Eric; Rosso, Carly; Houston, Suzanne; Dinov, Ivo D; Thompson, Paul M | The Journal of neuroscience : the official journal of the Society for Neuroscience | 20237258 | 2010 Mar 17 |
| Diffusion tensor tractography findings in schizophrenia across the adult lifespan. | Voineskos, Aristotle N; Lobaugh, Nancy J; Bouix, Sylvain; Rajji, Tarek K; Miranda, Dielle; Kennedy, James L; Mulsant, Benoit H; Pollock, Bruce G; Shenton, Martha E | Brain : a journal of neurology. | 20237131 | 2010 May; |
| Contributions of muscles and passive dynamics to swing initiation over a range of walking speeds. | Fox, Melanie D; Delp, Scott L | Journal of biomechanics | 20236644 | 2010 May 28 |
| Electronic medical records for discovery research in rheumatoid arthritis. | Liao, Katherine P; Cai, Tianxi; Gainer, Vivian; Goryachev, Sergey; Zeng-treitler, Qing; Raychaudhuri, Soumya; Szolovits, Peter; Churchill, Susanne; Murphy, Shawn; Kohane, Isaac; Karlson, Elizabeth W; Plenge, Robert M | Arthritis care & research | 20235204 | 2010 Aug |
| Electrostatic interactions between arginines and the minor groove in the nucleosome. | West, Sean M; Rohs, Remo; Mann, Richard S; Honig, Barry | Journal of biomolecular structure & dynamics | 20232938 | 2010 Jun |
| Cortical gray matter atrophy in healthy aging cannot be explained by undetected incipient cognitive disorders: a comment on Burgmans et al. (2009). | Fjell, Anders M; Westlye, Lars T; Espeseth, Thomas; Reinvang, Ivar; Dale, Anders M; Holland, Dominic; Walhovd, Kristine B | Neuropsychology | 20230119 | 2010 Mar |
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| Free-Form B-spline Deformation Model for Groupwise Registration. | Balci, Serdar K; Golland, Polina; Shenton, Martha; Wells, William M | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 20224762 | 2007 |
| Texture mapping via optimal mass transport. | Dominitz, Ayelet; Tannenbaum, Allen | IEEE transactions on visualization and computer graphics | 20224137 | 2010 May-Jun |
| The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex. | Lu, Xiang-Jun; Olson, Wilma K; Bussemaker, Harmen J | Nucleic acids research | 20223772 | 2010 Aug |
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