The 3rd Epigenome Informatics Workshop
March 5th – 6th, 2011 in Houston, Texas
Monday, March 5th 2011
| 8:15 – 9:00 am | Badge pickup & continental breakfast (outside auditorium) |
Session 1 | |
| 9:00 – 9:15 am | Introduction to the Workshop – Aleks Milosavljevic |
| 9:15 – 10:00 am | Introduction to Case Studies and Genboree – Aleks Milosavljevic |
Session 2 | |
| 10:00 – 1:00 pm | Case Studies: Epigenomic Variation between Tissues (Part 1 of 3) – Matt Roth, Kevin Riehle, Chia-Chin Wu, Yuan Yuan, Cristi Coarfa, Alan Harris, Aleks Milosavljevic |
| 1:00 – 2:00 pm | Boxed lunch (outside auditorium) |
Session 3 | |
| 2:00 – 3:30 pm | Case Studies: Epigenomic Variation between Individuals (Part 2 of 3) – Matt Roth, Kevin Riehle, Chia-Chin Wu, Yuan Yuan, Cristi Coarfa, Alan Harris, Aleks Milosavljevic |
| 3:30 - 3:45 pm | Break |
Session 4 | |
| 3:45 – 5:00 pm | Case Studies: Epigenomic Variation in Cancer (Part 3 of 3) – Matt Roth, Kevin Riehle, Chia-Chin Wu, Yuan Yuan, Cristi Coarfa, Alan Harris, Aleks Milosavljevic |
| 6:00 pm | Depart for Houston Livestock Show & Rodeo or dinner on your |
Tuesday, March 6th 2011
| 8:30 – 9:00 am | Continental Breakfast (outside auditorium) |
Session 5 | |
| 9:00 – 10:30 am | Review of Case Studies from previous day |
| 10:30 - 10:45 pm | Break |
Session 6 | |
| 10:45 – 11:30 am | NIH Roadmap best practices (experimental protocols, data analysis protocols, metadata standards, interoperability) –Aleks Milosavljevic (EDACC) |
| 11:30 – 1:00 pm | Quantitative profiling of histone modifications, peak calling and segmentation of epigenomic signals, and small RNA analysis – Cristi Coarfa (EDACC) |
| 1:00 – 2:00 pm | Boxed lunch (outside auditorium) |
Session 7 | |
| 2:00 – 2:30 pm | Whole-genome bisulfite sequencing: comparative analysis of programs for mapping bisulfite reads – Govind K Ramamoorthy (EDACC, Rob Waterland laboratory) |
| 2:30 – 3:00 pm | Methylome mapping using Illumina Human Methylome 450K arrays (Bekim Sadikovic, Art Beaudet Laboratory) |
| 3:00 – 3:30 pm | Methylome mapping using MeDIP-seq and RRBS and analysis of allelic imbalances (Alan Harris, EDACC) |
| 3:30 – 3:45 pm | Break |
Session 8 | |
| 3:45 – 4:45 pm | Open Discussion topic(s): to be determined during the workshop |
| 4:45 – 5:00 pm | Wrap-up |
| 5:00 pm | Adjourn |
This page last reviewed on January 10, 2014