The 4th Epigenome Informatics Workshop
May 17th - 18th, 2012 in Houston, Texas
Thursday, March 17th 2012
Friday, May 18th 2012
| 8:15 – 9:00 am | Badge pickup & continental breakfast (outside Kleberg Auditorium in the Alkek Graduate School Building) |
Session 1 | |
| 9:00 – 9:45 am | Introduction to the Workshop, Epigenome Analysis and Genboree – Matt Roth |
Session 2 | |
| 9:45 – 10:45 am | Use case preparation – Setting up projects, databases, groups, accessing files, user privileges, navigating Genboree, toolsets, submitting jobs, etc (BRL staff) |
| 10:45 - 11:00 am | Break |
| 11:00 – 1:00 pm | Hands-on Case Studies: Epigenomic Variation between Tissues (Part 1 of 3) – (BRL staff) |
| 1:00 – 2:00 pm | Boxed lunch (outside auditorium) |
Session 3 | |
| 2:00 – 3:30 pm | Hands-on Case Studies: Epigenomic Variation between Individuals (Part 2 of 3) (BRL staff) |
| 3:30 - 5:00 pm | Hands-on Case Studies: Epigenomic Variation in Cancer (Part 3 of 3) (BRL staff) |
| 6:30 pm | Depart for dinner as group (location TBD) or dinner on your own |
Friday, May 18th 2012
| 8:30 – 9:00 am | Continental Breakfast (outside auditorium) |
Session 4 | |
| 9:00 – 9:15 am | Review of Day 1 and preview of Day 2 - Matt Roth |
| 9:15 – 10:00 am | Quantitative profiling of histone modifications, peak calling and segmentation of epigenomic signals, RNA-seq, Chip-seq – Cristi Coarfa (EDACC) |
| 10:00 – 12:00 pm | Hands-on Case Study: RNA-seq Analysis (BRL staff) |
| 12:00 - 1:00 pm | Boxed lunch (outside auditorium) |
Session 5 | |
| 1:00 – 2:30 pm | Hands-on Case Study: Chip-seq analysis (BRL staff) |
| 2:30 – 3:00 pm | Hands-on Case Study: Virtual data integration using Genboree (BRL staff) |
| 3:00 – 4:30 pm | Hands-on: semi-structured time for completing data analysis/case studies, informal discussions, and feedback from users on practical changes that can improve tools (BRL staff) |
| 4:30 – 5:00 pm | Open discussion and wrap-up |
| 5:00 pm | Adjourn |
This page last reviewed on January 10, 2014