Publications Search by Program
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The search results on this publication page are automated on a monthly schedule based on acknowledgment of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
NIH Director's Pioneer Award Program (4443)
| Publication Title | Authors | Journal | Publication Date | Page No | PubMedID |
|---|---|---|---|---|---|
| A distributed and efficient population code of mixed selectivity neurons for flexible navigation decisions. | Kira, Shinichiro; Safaai, Houman; Morcos, Ari S; Panzeri, Stefano; Harvey, Christopher D | Nature communications | 2023 Apr 14 | 2121 | 37055431 |
| Stress granules are shock absorbers that prevent excessive innate immune responses to dsRNA. | Paget, Max; Cadena, Cristhian; Ahmad, Sadeem; Wang, Hai-Tao; Jordan, Tristan X; Kim, Ehyun; Koo, Beechui; Lyons, Shawn M; Ivanov, Pavel; tenOever, Benjamin; Mu, Xin; Hur, Sun | Molecular cell | 2023 Apr 06 | 1180-1196.e8 | 37028415 |
| Nanowire-Enabled Bioelectronics. | Zhang, Anqi; Lee, Jae-Hyun; Lieber, Charles M | Nano today | 2021 Jun | 36970717 | |
| Cancer hallmarks intersect with neuroscience in the tumor microenvironment. | Hanahan, Douglas; Monje, Michelle | Cancer cell | 2023 Mar 13 | 573-580 | 36917953 |
| Live imaging reveals chromatin compaction transitions and dynamic transcriptional bursting during stem cell differentiation in vivo. | May, Dennis; Yun, Sangwon; Gonzalez, David G; Park, Sangbum; Chen, Yanbo; Lathrop, Elizabeth; Cai, Biao; Xin, Tianchi; Zhao, Hongyu; Wang, Siyuan; Gonzalez, Lauren E; Cockburn, Katie; Greco, Valentina | eLife | 2023 Mar 07 | 36880644 | |
| Mediation analysis in the presence of continuous exposure measurement error. | Cheng, Chao; Spiegelman, Donna; Li, Fan | Statistics in medicine | 2023 Mar 04 | 36869626 | |
| Automatic and accurate ligand structure determination guided by cryo-electron microscopy maps. | Muenks, Andrew; Zepeda, Samantha; Zhou, Guangfeng; Veesler, David; DiMaio, Frank | Nature communications | 2023 Mar 01 | 1164 | 36859493 |
| Conjugation's Toolkit: the Roles of Nonstructural Proteins in Bacterial Sex. | Cooke, Matthew B; Herman, Christophe | Journal of bacteriology | 2023 Mar 21 | e0043822 | 36847532 |
| A pharmacokinetic model of antiseizure medication load to guide care in the epilepsy monitoring unit. | Ghosn, Nina J; Xie, Kevin; Pattnaik, Akash R; Gugger, James J; Ellis, Colin A; Sweeney, Elizabeth; Fox, Emily; Bernabei, John M; Johnson, Jenaye; Boccanfuso, Jacqueline; Litt, Brian; Conrad, Erin C | Epilepsia | 2023 Feb 23 | 36815252 | |
| Enteroendocrine cell lineages that differentially control feeding and gut motility. | Hayashi, Marito; Kaye, Judith A; Douglas, Ella R; Joshi, Narendra R; Gribble, Fiona M; Reimann, Frank; Liberles, Stephen D | eLife | 2023 Feb 22 | 36810133 | |
| HIV-1 prehairpin intermediate inhibitors show efficacy independent of neutralization tier. | Bell, Benjamin N; Bruun, Theodora U J; Friedland, Natalia; Kim, Peter S | Proceedings of the National Academy of Sciences of the United States of America | 2023 Feb 21 | e2215792120 | 36795752 |
| Mice and primates use distinct strategies for visual segmentation. | Luongo, Francisco J; Liu, Lu; Ho, Chun Lum Andy; Hesse, Janis K; Wekselblatt, Joseph B; Lanfranchi, Frank F; Huber, Daniel; Tsao, Doris Y | eLife | 2023 Feb 15 | 36790170 | |
| gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota. | Pascal Andreu, Victòria; Augustijn, Hannah E; Chen, Lianmin; Zhernakova, Alexandra; Fu, Jingyuan; Fischbach, Michael A; Dodd, Dylan; Medema, Marnix H | Nature biotechnology | 2023 Feb 13 | 36782070 | |
| Nuclear condensates in YAP1-driven ependymoma. | Dadras, Mahsa Shahidi; Fine, Howard A | Nature cell biology | 2023 Feb | 211-213 | 36732630 |
| The impact of nucleosome structure on CRISPR/Cas9 fidelity. | Handelmann, Christopher R; Tsompana, Maria; Samudrala, Ram; Buck, Michael J | Nucleic acids research | 2023 Feb 02 | 36727449 | |
| Oxytocin receptor is not required for social attachment in prairie voles. | Berendzen, Kristen M; Sharma, Ruchira; Mandujano, Maricruz Alvarado; Wei, Yichao; Rogers, Forrest D; Simmons, Trenton C; Seelke, Adele M H; Bond, Jessica M; Larios, Rose; Goodwin, Nastacia L; Sherman, Michael; Parthasarthy, Srinivas; Espineda, Isidero; Kn | Neuron | 2023 Mar 15 | 787-796.e4 | 36708707 |
| Chromatin complex dependencies reveal targeting opportunities in leukemia. | Najm, Fadi J; DeWeirdt, Peter; Moore, Molly M; Bevill, Samantha M; El Farran, Chadi A; Macias, Kevin A; Hegde, Mudra; Waterbury, Amanda L; Liau, Brian B; van Galen, Peter; Doench, John G; Bernstein, Bradley E | Nature communications | 2023 Jan 27 | 448 | 36707513 |
| Analysis of Cre lines for targeting embryonic airway smooth muscle. | Goodwin, Katharine; Nelson, Celeste M | Developmental biology | 2023 Apr | 63-72 | 36706974 |
| A concerted mechanism involving ACAT and SREBPs by which oxysterols deplete accessible cholesterol to restrict microbial infection. | Heisler, David B; Johnson, Kristen A; Ma, Duo H; Ohlson, Maikke B; Zhang, Lishu; Tran, Michelle; Corley, Chase D; Abrams, Michael E; McDonald, Jeffrey G; Schoggins, John W; Alto, Neal M; Radhakrishnan, Arun | eLife | 2023 Jan 25 | 36695568 | |
| Membrane-acting biomimetic peptoids against visceral leishmaniasis. | Kumar, Vivek; Lin, Jennifer S; Molchanova, Natalia; Fortkort, John A; Reckmann, Carolin; Bräse, Stefan; Jenssen, Håvard; Barron, Annelise E; Chugh, Archana | FEBS open bio | 2023 Jan 22 | 36683396 | |
| Multiscale Analysis and Validation of Effective Drug Combinations Targeting Driver KRAS Mutations in Non-Small Cell Lung Cancer. | Bruggemann, Liana; Falls, Zackary; Mangione, William; Schwartz, Stanley A; Battaglia, Sebastiano; Aalinkeel, Ravikumar; Mahajan, Supriya D; Samudrala, Ram | International journal of molecular sciences | 2023 Jan 05 | 36674513 | |
| Using artificial neural networks to ask 'why' questions of minds and brains. | Kanwisher, Nancy; Khosla, Meenakshi; Dobs, Katharina | Trends in neurosciences | 2023 Mar | 240-254 | 36658072 |
| Molecular fate-mapping of serum antibody responses to repeat immunization. | Schiepers, Ariën; van 't Wout, Marije F L; Greaney, Allison J; Zang, Trinity; Muramatsu, Hiromi; Lin, Paulo J C; Tam, Ying K; Mesin, Luka; Starr, Tyler N; Bieniasz, Paul D; Pardi, Norbert; Bloom, Jesse D; Victora, Gabriel D | Nature | 2023 Mar | 482-489 | 36646114 |
| Antiviral Approaches against Influenza Virus. | Kumari, Rashmi; Sharma, Suresh D; Kumar, Amrita; Ende, Zachary; Mishina, Margarita; Wang, Yuanyuan; Falls, Zackary; Samudrala, Ram; Pohl, Jan; Knight, Paul R; Sambhara, Suryaprakash | Clinical microbiology reviews | 2023 Jan 16 | e0004022 | 36645300 |
| Polyphasic circadian neural circuits drive differential activities in multiple downstream rhythmic centers. | Liang, Xitong; Holy, Timothy E; Taghert, Paul H | Current biology : CB | 2023 Jan 23 | 351-363.e3 | 36610393 |
| Brainstem serotonin neurons selectively gate retinal information flow to thalamus. | Reggiani, Jasmine D S; Jiang, Qiufen; Barbini, Melanie; Lutas, Andrew; Liang, Liang; Fernando, Jesseba; Deng, Fei; Wan, Jinxia; Li, Yulong; Chen, Chinfei; Andermann, Mark L | Neuron | 2023 Mar 01 | 711-726.e11 | 36584680 |
| Clonal replacement sustains long-lived germinal centers primed by respiratory viruses. | de Carvalho, Renan V H; Ersching, Jonatan; Barbulescu, Alexandru; Hobbs, Alvaro; Castro, Tiago B R; Mesin, Luka; Jacobsen, Johanne T; Phillips, Brooke K; Hoffmann, Hans-Heinrich; Parsa, Roham; Canesso, Maria Cecilia C; Nowosad, Carla R; Feng, Allan; Leist, Sarah R; Baric, Ralph S; Yang, Emily; Utz, P J; Victora, Gabriel D | Cell | 2023 Jan 05 | 131-146.e13 | 36565697 |
| Clutch Control: Changing the Speed and Direction of CAR-T Cell Therapy. | Nobili, Alberto; Kobayashi, Aya; Gedeon, Patrick C; Novina, Carl D | Journal of cancer immunology | 2022 | 36531912 | |
| Muscarinic antagonists impair multiple aspects of operant discrimination learning and performance. | Yousuf, Hanna; Girardi, Eric M; Crouse, Richard B; Picciotto, Marina R | Neuroscience letters | 2023 Jan 18 | 36529388 | |
| Multidimensional control of therapeutic human cell function with synthetic gene circuits. | Li, Hui-Shan; Israni, Divya V; Gagnon, Keith A; Gan, Kok Ann; Raymond, Michael H; Sander, Jeffry D; Roybal, Kole T; Joung, J Keith; Wong, Wilson W; Khalil, Ahmad S | Science (New York, N.Y.) | 2022 Dec 16 | 1227-1234 | 36520914 |
| Brain borders at the central stage of neuroimmunology. | Rustenhoven, Justin; Kipnis, Jonathan | Nature | 2022 Dec | 417-429 | 36517712 |
| Tagging active neurons by soma-targeted Cal-Light. | Hyun, Jung Ho; Nagahama, Kenichiro; Namkung, Ho; Mignocchi, Neymi; Roh, Seung-Eon; Hannan, Patrick; Krüssel, Sarah; Kwak, Chuljung; McElroy, Abigail; Liu, Bian; Cui, Mingguang; Lee, Seunghwan; Lee, Dongmin; Huganir, Richard L; Worley, Paul F; Sawa, Akira; Kwon, Hyung-Bae | Nature communications | 2022 Dec 12 | 36509775 | |
| Information flow across the cortical timescale hierarchy during narrative construction. | Chang, Claire H C; Nastase, Samuel A; Hasson, Uri | Proceedings of the National Academy of Sciences of the United States of America | 2022 Dec 20 | 36508677 | |
| Correlated gene modules uncovered by high-precision single-cell transcriptomics. | Chapman, Alec R; Lee, David F; Cai, Wenting; Ma, Wenping; Li, Xiang; Sun, Wenjie; Xie, Xiaoliang Sunney | Proceedings of the National Academy of Sciences of the United States of America | 2022 Dec 20 | 36508663 | |
| Maturation of SARS-CoV-2 Spike-specific memory B cells drives resilience to viral escape. | Marzi, Roberta; Bassi, Jessica; Silacci-Fregni, Chiara; Bartha, Istvan; Muoio, Francesco; Culap, Katja; Sprugasci, Nicole; Lombardo, Gloria; Saliba, Christian; Cameroni, Elisabetta; Cassotta, Antonino; Low, Jun Siong; Walls, Alexandra C; McCallum, Matthew; Tortorici, M Alejandra; Bowen, John E; Dellota Jr, Exequiel A; Dillen, Josh R; Czudnochowski, Nadine; Pertusini, Laura; Terrot, Tatiana; Lepori, Valentino; Tarkowski, Maciej; Riva, Agostino; Biggiogero, Maira; Franzetti-Pellanda, Alessandra; Garzoni, Christian; Ferrari, Paolo; Ceschi, Alessandro; Giannini, Olivier; Havenar-Daughton, Colin; Telenti, Amalio; Arvin, Ann; Virgin, Herbert W; Sallusto, Federica; Veesler, David; Lanzavecchia, Antonio; Corti, Davide; Piccoli, Luca | iScience | 2023 Jan 20 | 36507220 | |
| Spike patterns surrounding sleep and seizures localize the seizure-onset zone in focal epilepsy. | Conrad, Erin C; Revell, Andrew Y; Greenblatt, Adam S; Gallagher, Ryan S; Pattnaik, Akash R; Hartmann, Nicole; Gugger, James J; Shinohara, Russell T; Litt, Brian; Marsh, Eric D; Davis, Kathryn A | Epilepsia | 2022 Dec 09 | 36484572 | |
| Close relatives of MERS-CoV in bats use ACE2 as their functional receptors. | Xiong, Qing; Cao, Lei; Ma, Chengbao; Tortorici, M Alejandra; Liu, Chen; Si, Junyu; Liu, Peng; Gu, Mengxue; Walls, Alexandra C; Wang, Chunli; Shi, Lulu; Tong, Fei; Huang, Meiling; Li, Jing; Zhao, Chufeng; Shen, Chao; Chen, Yu; Zhao, Huabin; Lan, Ke; Corti, Davide; Veesler, David; Wang, Xiangxi; Yan, Huan | Nature | 2022 Dec | 748-757 | 36477529 |
| NAD precursors cycle between host tissues and the gut microbiome. | Chellappa, Karthikeyani; McReynolds, Melanie R; Lu, Wenyun; Zeng, Xianfeng; Makarov, Mikhail; Hayat, Faisal; Mukherjee, Sarmistha; Bhat, Yashaswini R; Lingala, Siddharth R; Shima, Rafaella T; Descamps, Hélène C; Cox, Timothy; Ji, Lixin; Jankowski, Connor; Chu, Qingwei; Davidson, Shawn M; Thaiss, Christoph A; Migaud, Marie E; Rabinowitz, Joshua D; Baur, Joseph A | Cell metabolism | 2022 Dec 06 | 36476934 | |
| Hemispherically lateralized rhythmic oscillations in the cingulate-amygdala circuit drive affective empathy in mice. | Kim, Seong-Wook; Kim, Minsoo; Baek, Jinhee; Latchoumane, Charles-Francois; Gangadharan, Gireesh; Yoon, Yongwoo; Kim, Duk-Soo; Lee, Jin Hyung; Shin, Hee-Sup | Neuron | 2023 Feb 01 | 418-429.e4 | 36460007 |
| Spatiotemporally heterogeneous coordination of cholinergic and neocortical activity. | Lohani, Sweyta; Moberly, Andrew H; Benisty, Hadas; Landa, Boris; Jing, Miao; Li, Yulong; Higley, Michael J; Cardin, Jessica A | Nature neuroscience | 2022 Dec | 36443609 | |
| RNA-activated protein cleavage with a CRISPR-associated endopeptidase. | Strecker, Jonathan; Demircioglu, F Esra; Li, David; Faure, Guilhem; Wilkinson, Max E; Gootenberg, Jonathan S; Abudayyeh, Omar O; Nishimasu, Hiroshi; Macrae, Rhiannon K; Zhang, Feng | Science (New York, N.Y.) | 2022 Nov 25 | 36423276 | |
| A blood-brain penetrant RNA-targeted small molecule triggers elimination of r(G4C2)exp in c9ALS/FTD via the nuclear RNA exosome. | Bush, Jessica A; Meyer, Samantha M; Fuerst, Rita; Tong, Yuquan; Li, Yue; Benhamou, Raphael I; Aikawa, Haruo; Zanon, Patrick R A; Gibaut, Quentin M R; Angelbello, Alicia J; Gendron, Tania F; Zhang, Yong-Jie; Petrucelli, Leonard; Heick Jensen, Torben; Childs-Disney, Jessica L; Disney, Matthew D | Proceedings of the National Academy of Sciences of the United States of America | 2022 Nov 29 | 36409902 | |
| Deep mutational scans for ACE2 binding, RBD expression, and antibody escape in the SARS-CoV-2 Omicron BA.1 and BA.2 receptor-binding domains. | Starr, Tyler N; Greaney, Allison J; Stewart, Cameron M; Walls, Alexandra C; Hannon, William W; Veesler, David; Bloom, Jesse D | PLoS pathogens | 2022 Nov | 36399443 | |
| Myeloid-derived itaconate suppresses cytotoxic CD8+ T cells and promotes tumour growth. | Zhao, Hongyun; Teng, Da; Yang, Lifeng; Xu, Xincheng; Chen, Jiajia; Jiang, Tengjia; Feng, Austin Y; Zhang, Yaqing; Frederick, Dennie T; Gu, Lei; Cai, Li; Asara, John M; Pasca di Magliano, Marina; Boland, Genevieve M; Flaherty, Keith T; Swanson, Kenneth D; Liu, David; Rabinowitz, Joshua D; Zheng, Bin | Nature metabolism | 2022 Dec | 36376563 | |
| Gradual differentiation uncoupled from cell cycle exit generates heterogeneity in the epidermal stem cell layer. | Cockburn, Katie; Annusver, Karl; Gonzalez, David G; Ganesan, Smirthy; May, Dennis P; Mesa, Kailin R; Kawaguchi, Kyogo; Kasper, Maria; Greco, Valentina | Nature cell biology | 2022 Dec | 1692-1700 | 36357619 |
| SARS-CoV-2 spike conformation determines plasma neutralizing activity elicited by a wide panel of human vaccines. | Bowen, John E; Park, Young-Jun; Stewart, Cameron; Brown, Jack T; Sharkey, William K; Walls, Alexandra C; Joshi, Anshu; Sprouse, Kaitlin R; McCallum, Matthew; Tortorici, M Alejandra; Franko, Nicholas M; Logue, Jennifer K; Mazzitelli, Ignacio G; Nguyen, Annalee W; Silva, Rui P; Huang, Yimin; Low, Jun Siong; Jerak, Josipa; Tiles, Sasha W; Ahmed, Kumail; Shariq, Asefa; Dan, Jennifer M; Zhang, Zeli; Weiskopf, Daniela; Sette, Alessandro; Snell, Gyorgy; Posavad, Christine M; Iqbal, Najeeha Talat; Geffner, Jorge; Bandera, Alessandra; Gori, Andrea; Sallusto, Federica; Maynard, Jennifer A; Crotty, Shane; Van Voorhis, Wesley C; Simmerling, Carlos; Grifantini, Renata; Chu, Helen Y; Corti, Davide; Veesler, David | Science immunology | 2022 Dec 23 | 36356052 | |
| Solving brain circuit function and dysfunction with computational modeling and optogenetic fMRI. | Lee, Jin Hyung; Liu, Qin; Dadgar-Kiani, Ehsan | Science (New York, N.Y.) | 2022 11 04 | 36327349 | |
| The neurobiology of long COVID. | Monje, Michelle; Iwasaki, Akiko | Neuron | 2022 Nov 02 | 36288726 | |
| Subcellular localization of type IV pili regulates bacterial multicellular development. | Ellison, Courtney K; Fei, Chenyi; Dalia, Triana N; Wingreen, Ned S; Dalia, Ankur B; Shaevitz, Joshua W; Gitai, Zemer | Nature communications | 2022 Oct 25 | 36284096 | |
| Single molecule microscopy to profile the effect of zinc status on transcription factor dynamics. | Damon, Leah J; Aaron, Jesse; Palmer, Amy E | Scientific reports | 2022 Oct 22 | 17789 | 36273101 |
| Global and gene-specific translational regulation in Escherichia coli across different conditions. | Zhang, Di; Li, Sophia Hsin-Jung; King, Christopher G; Wingreen, Ned S; Gitai, Zemer; Li, Zhiyuan | PLoS computational biology | 2022 10 | 36264977 | |
| Imprinted antibody responses against SARS-CoV-2 Omicron sublineages. | Park, Young-Jun; Pinto, Dora; Walls, Alexandra C; Liu, Zhuoming; De Marco, Anna; Benigni, Fabio; Zatta, Fabrizia; Silacci-Fregni, Chiara; Bassi, Jessica; Sprouse, Kaitlin R; Addetia, Amin; Bowen, John E; Stewart, Cameron; Giurdanella, Martina; Saliba, Christian; Guarino, Barbara; Schmid, Michael A; Franko, Nicholas M; Logue, Jennifer K; Dang, Ha V; Hauser, Kevin; di Iulio, Julia; Rivera, William; Schnell, Gretja; Rajesh, Anushka; Zhou, Jiayi; Farhat, Nisar; Kaiser, Hannah; Montiel-Ruiz, Martin; Noack, Julia; Lempp, Florian A; Janer, Javier; Abdelnabi, Rana; Maes, Piet; Ferrari, Paolo; Ceschi, Alessandro; Giannini, Olivier; de Melo, Guilherme Dias; Kergoat, Lauriane; Bourhy, Hervé; Neyts, Johan; Soriaga, Leah; Purcell, Lisa A; Snell, Gyorgy; Whelan, Sean P J; Lanzavecchia, Antonio; Virgin, Herbert W; Piccoli, Luca; Chu, Helen Y; Pizzuto, Matteo Samuele; Corti, Davide; Veesler, David | Science (New York, N.Y.) | 2022 Nov 11 | 36264829 | |
| Reirradiation for Recurrent Glioblastoma: What We Know and What We Do Not. | Knisely, Jonathan P S; Fine, Howard A | Journal of clinical oncology : official journal of the American Society of Clinical Oncology | 2023 Feb 20 | 1183-1188 | 36260825 |
| Activity of a direct VTA to ventral pallidum GABA pathway encodes unconditioned reward value and sustains motivation for reward. | Zhou, Wen-Liang; Kim, Kristen; Ali, Farhan; Pittenger, Steven T; Calarco, Cali A; Mineur, Yann S; Ramakrishnan, Charu; Deisseroth, Karl; Kwan, Alex C; Picciotto, Marina R | Science advances | 2022 Oct 21 | 36260661 | |
| Structure of the OMEGA nickase IsrB in complex with ωRNA and target DNA. | Hirano, Seiichi; Kappel, Kalli; Altae-Tran, Han; Faure, Guilhem; Wilkinson, Max E; Kannan, Soumya; Demircioglu, F Esra; Yan, Rui; Shiozaki, Momoko; Yu, Zhiheng; Makarova, Kira S; Koonin, Eugene V; Macrae, Rhiannon K; Zhang, Feng | Nature | 2022 10 | 36224386 | |
| Light-Seq: light-directed in situ barcoding of biomolecules in fixed cells and tissues for spatially indexed sequencing. | Kishi, Jocelyn Y; Liu, Ninning; West, Emma R; Sheng, Kuanwei; Jordanides, Jack J; Serrata, Matthew; Cepko, Constance L; Saka, Sinem K; Yin, Peng | Nature methods | 2022 Nov | 36216958 | |
| Microfluidic Enrichment and Computational Analysis of Rare Sequences from Mixed Genomic Samples for Metagenomic Mining. | Cui, Naiwen; Faure, Guihem; Singh, Ankita; Macrae, Rhiannon; Zhang, Feng | The CRISPR journal | 2022 Oct | 36206017 | |
| Maturation of SARS-CoV-2 Spike-specific memory B cells drives resilience to viral escape. | Marzi, Roberta; Bassi, Jessica; Silacci-Fregni, Chiara; Bartha, Istvan; Muoio, Francesco; Culap, Katja; Sprugasci, Nicole; Lombardo, Gloria; Saliba, Christian; Cameroni, Elisabetta; Cassotta, Antonino; Low, Jun Siong; Walls, Alexandra C; McCallum, Matthew; Tortorici, M Alejandra; Bowen, John E; Dellota Jr, Exequiel A; Dillen, Josh R; Czudnochowski, Nadine; Pertusini, Laura; Terrot, Tatiana; Lepori, Valentino; Tarkowski, Maciej; Riva, Agostino; Biggiogero, Maira; Pellanda, Alessandra Franzetti; Garzoni, Christian; Ferrari, Paolo; Ceschi, Alessandro; Giannini, Olivier; Havenar-Daughton, Colin; Telenti, Amalio; Arvin, Ann; Virgin, Herbert W; Sallusto, Federica; Veesler, David; Lanzavecchia, Antonio; Corti, Davide; Piccoli, Luca | bioRxiv : the preprint server for biology | 2022 Sep 30 | 36203553 | |
| Long-range phasing of dynamic, tissue-specific and allele-specific regulatory elements. | Battaglia, Sofia; Dong, Kevin; Wu, Jingyi; Chen, Zeyu; Najm, Fadi J; Zhang, Yuanyuan; Moore, Molly M; Hecht, Vivian; Shoresh, Noam; Bernstein, Bradley E | Nature genetics | 2022 Oct | 36195755 | |
| Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions. | Narunsky-Haziza, Lian; Sepich-Poore, Gregory D; Livyatan, Ilana; Asraf, Omer; Martino, Cameron; Nejman, Deborah; Gavert, Nancy; Stajich, Jason E; Amit, Guy; González, Antonio; Wandro, Stephen; Perry, Gili; Ariel, Ruthie; Meltser, Arnon; Shaffer, Justin P; Zhu, Qiyun; Balint-Lahat, Nora; Barshack, Iris; Dadiani, Maya; Gal-Yam, Einav N; Patel, Sandip Pravin; Bashan, Amir; Swafford, Austin D; Pilpel, Yitzhak; Knight, Rob; Straussman, Ravid | Cell | 2022 Sep 29 | 36179670 | |
| Distinct local and brain-wide networks are activated by optogenetic stimulation of neurons specific to each layer of motor cortex. | Chan, Russell W; Cron, Greg O; Asaad, Mazen; Edelman, Bradley J; Lee, Hyun Joo; Adesnik, Hillel; Feinberg, David; Lee, Jin Hyung | NeuroImage | 2022 Sep 20 | 119640 | 36176220 |
| Concurrent inhibition of CDK2 adds to the anti-tumour activity of CDK4/6 inhibition in GIST. | Schaefer, Inga-Marie; Hemming, Matthew L; Lundberg, Meijun Z; Serrata, Matthew P; Goldaracena, Isabel; Liu, Ninning; Yin, Peng; Paulo, Joao A; Gygi, Steven P; George, Suzanne; Morgan, Jeffrey A; Bertagnolli, Monica M; Sicinska, Ewa T; Chu, Chen; Zheng, Shanshan; Mariño-Enríquez, Adrian; Hornick, Jason L; Raut, Chandrajit P; Ou, Wen-Bin; Demetri, George D; Saka, Sinem K; Fletcher, Jonathan A | British journal of cancer | 2022 Nov | 36175617 | |
| Phosphorylcholine-conjugated gold-molecular clusters improve signal for Lymph Node NIR-II fluorescence imaging in preclinical cancer models. | Baghdasaryan, Ani; Wang, Feifei; Ren, Fuqiang; Ma, Zhuoran; Li, Jiachen; Zhou, Xueting; Grigoryan, Lilit; Xu, Chun; Dai, Hongjie | Nature communications | 2022 Sep 24 | 36153336 | |
| Low-field MRI: Clinical promise and challenges. | Arnold, Thomas Campbell; Freeman, Colbey W; Litt, Brian; Stein, Joel M | Journal of magnetic resonance imaging : JMRI | 2022 Sep 19 | 36120962 | |
| Enterovirus 3C Protease Cleaves TRIM7 To Dampen Its Antiviral Activity. | Fan, Wenchun; McDougal, Matthew B; Schoggins, John W | Journal of virology | 2022 Oct 12 | 36106874 | |
| mTOR-regulated mitochondrial metabolism limits mycobacterium-induced cytotoxicity. | Pagán, Antonio J; Lee, Lauren J; Edwards-Hicks, Joy; Moens, Cecilia B; Tobin, David M; Busch-Nentwich, Elisabeth M; Pearce, Erika L; Ramakrishnan, Lalita | Cell | 2022 Sep 29 | 3720-3738.e13 | 36103894 |
| Stem cell-derived synthetic embryos self-assemble by exploiting cadherin codes and cortical tension. | Bao, Min; Cornwall-Scoones, Jake; Sanchez-Vasquez, Estefania; Chen, Dong-Yuan; De Jonghe, Joachim; Shadkhoo, Shahriar; Hollfelder, Florian; Thomson, Matt; Glover, David M; Zernicka-Goetz, Magdalena | Nature cell biology | 2022 Sep | 36100738 | |
| Optimal COVID-19 therapeutic candidate discovery using the CANDO platform. | Mangione, William; Falls, Zackary; Samudrala, Ram | Frontiers in pharmacology | 2022 | 970494 | 36091793 |
| Multimerization of Ebola GPΔmucin on protein nanoparticle vaccines has minimal effect on elicitation of neutralizing antibodies. | Powell, Abigail E; Xu, Duo; Roth, Gillie A; Zhang, Kaiming; Chiu, Wah; Appel, Eric A; Kim, Peter S | Frontiers in immunology | 2022 | 36091016 | |
| Mouse embryo model derived exclusively from embryonic stem cells undergoes neurulation and heart development. | Lau, Kasey Y C; Rubinstein, Hernan; Gantner, Carlos W; Hadas, Ron; Amadei, Gianluca; Stelzer, Yonatan; Zernicka-Goetz, Magdalena | Cell stem cell | 2022 Oct 06 | 36084657 | |
| Addressing spatial bias in intracranial EEG functional connectivity analyses for epilepsy surgical planning. | Conrad, Erin C; Bernabei, John M; Sinha, Nishant; Ghosn, Nina J; Stein, Joel M; Shinohara, Russell T; Litt, Brian | Journal of neural engineering | 2022 09 23 | 36084621 | |
| Converting non-neutralizing SARS-CoV-2 antibodies into broad-spectrum inhibitors. | Weidenbacher, Payton A-B; Waltari, Eric; de Los Rios Kobara, Izumi; Bell, Benjamin N; Morris, Mary Kate; Cheng, Ya-Chen; Hanson, Carl; Pak, John E; Kim, Peter S | Nature chemical biology | 2022 Nov | 36076082 | |
| devCellPy is a machine learning-enabled pipeline for automated annotation of complex multilayered single-cell transcriptomic data. | Galdos, Francisco X; Xu, Sidra; Goodyer, William R; Duan, Lauren; Huang, Yuhsin V; Lee, Soah; Zhu, Han; Lee, Carissa; Wei, Nicholas; Lee, Daniel; Wu, Sean M | Nature communications | 2022 Sep 07 | 36071107 | |
| Design, construction, and in vivo augmentation of a complex gut microbiome. | Cheng, Alice G; Ho, Po-Yi; Aranda-Díaz, Andrés; Jain, Sunit; Yu, Feiqiao B; Meng, Xiandong; Wang, Min; Iakiviak, Mikhail; Nagashima, Kazuki; Zhao, Aishan; Murugkar, Pallavi; Patil, Advait; Atabakhsh, Katayoon; Weakley, Allison; Yan, Jia; Brumbaugh, Ariel R; Higginbottom, Steven; Dimas, Alejandra; Shiver, Anthony L; Deutschbauer, Adam; Neff, Norma; Sonnenburg, Justin L; Huang, Kerwyn Casey; Fischbach, Michael A | Cell | 2022 Sep 15 | 36070752 | |
| Metabolite Exchange between Mammalian Organs Quantified in Pigs. | Jang, Cholsoon; Hui, Sheng; Zeng, Xianfeng; Cowan, Alexis J; Wang, Lin; Chen, Li; Morscher, Raphael J; Reyes, Jorge; Frezza, Christian; Hwang, Ho Young; Imai, Akito; Saito, Yoshiaki; Okamoto, Keitaro; Vaspoli, Christine; Kasprenski, Loewe; Zsido 2nd, Gerald A; Gorman 3rd, Joseph H; Gorman, Robert C; Rabinowitz, Joshua D | Cell metabolism | 2022 Sep 06 | 36070684 | |
| Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks. | Yamamoto, Takaki; Cockburn, Katie; Greco, Valentina; Kawaguchi, Kyogo | PLoS computational biology | 2022 09 | 36067226 | |
| Gut bacterial nutrient preferences quantified in vivo. | Zeng, Xianfeng; Xing, Xi; Gupta, Meera; Keber, Felix C; Lopez, Jaime G; Lee, Ying-Chiang J; Roichman, Asael; Wang, Lin; Neinast, Michael D; Donia, Mohamed S; Wühr, Martin; Jang, Cholsoon; Rabinowitz, Joshua D | Cell | 2022 Sep 01 | 36055202 | |
| ACh signaling modulates activity of the GABAergic signaling network in the basolateral amygdala and behavior in stress-relevant paradigms. | Mineur, Yann S; Mose, Tenna N; Maibom, Kathrine Lefoli; Pittenger, Steven T; Soares, Alexa R; Wu, Hao; Taylor, Seth R; Huang, Yaqing; Picciotto, Marina R | Molecular psychiatry | 2022 Sep 01 | 36050437 | |
| Most cancers carry a substantial deleterious load due to Hill-Robertson interference. | Tilk, Susanne; Tkachenko, Svyatoslav; Curtis, Christina; Petrov, Dmitri A; McFarland, Christopher D | eLife | 2022 09 01 | 36047771 | |
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| Perforin-2 clockwise hand-over-hand pre-pore to pore transition mechanism. | Jiao, Fang; Dehez, François; Ni, Tao; Yu, Xiulian; Dittman, Jeremy S; Gilbert, Robert; Chipot, Christophe; Scheuring, Simon | Nature communications | 2022 Aug 26 | 36028507 | |
| Structure and engineering of the minimal type VI CRISPR-Cas13bt3. | Nakagawa, Ryoya; Kannan, Soumya; Altae-Tran, Han; Takeda, Satoru N; Tomita, Atsuhiro; Hirano, Hisato; Kusakizako, Tsukasa; Nishizawa, Tomohiro; Yamashita, Keitaro; Zhang, Feng; Nishimasu, Hiroshi; Nureki, Osamu | Molecular cell | 2022 09 01 | 36027912 | |
| A highly selective response to food in human visual cortex revealed by hypothesis-free voxel decomposition. | Khosla, Meenakshi; Ratan Murty, N Apurva; Kanwisher, Nancy | Current biology : CB | 2022 Oct 10 | 36027910 | |
| Anti-persister and Anti-biofilm Activity of Self-Assembled Antimicrobial Peptoid Ellipsoidal Micelles. | Lin, Jennifer S; Bekale, Laurent A; Molchanova, Natalia; Nielsen, Josefine Eilsø; Wright, Megan; Bacacao, Brian; Diamond, Gill; Jenssen, Håvard; Santa Maria, Peter L; Barron, Annelise E | ACS infectious diseases | 2022 Sep 09 | 1823-1830 | 36018039 |
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| Fos ensembles encode and shape stable spatial maps in the hippocampus. | Pettit, Noah L; Yap, Ee-Lynn; Greenberg, Michael E; Harvey, Christopher D | Nature | 2022 09 | 36002569 | |
| Distinct sensitivities to SARS-CoV-2 variants in vaccinated humans and mice. | Walls, Alexandra C; VanBlargan, Laura A; Wu, Kai; Choi, Angela; Navarro, Mary Jane; Lee, Diana; Avena, Laura; Berrueta, Daniela Montes; Pham, Minh N; Elbashir, Sayda; Kraft, John C; Miranda, Marcos C; Kepl, Elizabeth; Johnson, Max; Blackstone, Alyssa; Sprouse, Kaitlin; Fiala, Brooke; O'Connor, Megan A; Brunette, Natalie; Arunachalam, Prabhu S; Shirreff, Lisa; Rogers, Kenneth; Carter, Lauren; Fuller, Deborah H; Villinger, Francois; Pulendran, Bali; Diamond, Michael S; Edwards, Darin K; King, Neil P; Veesler, David | Cell reports | 2022 Aug 30 | 35988541 | |
| Stem-cell-based human and mouse embryo models. | Bao, Min; Cornwall-Scoones, Jake; Zernicka-Goetz, Magdalena | Current opinion in genetics & development | 2022 10 | 35988317 | |
| Durable protection against the SARS-CoV-2 Omicron variant is induced by an adjuvanted subunit vaccine. | Arunachalam, Prabhu S; Feng, Yupeng; Ashraf, Usama; Hu, Mengyun; Walls, Alexandra C; Edara, Venkata Viswanadh; Zarnitsyna, Veronika I; Aye, Pyone Pyone; Golden, Nadia; Miranda, Marcos C; Green, Kristyn W M; Threeton, Breanna M; Maness, Nicholas J; Beddingfield, Brandon J; Bohm, Rudolf P; Scheuermann, Sarah E; Goff, Kelly; Dufour, Jason; Russell-Lodrigue, Kasi; Kepl, Elizabeth; Fiala, Brooke; Wrenn, Samuel; Ravichandran, Rashmi; Ellis, Daniel; Carter, Lauren; Rogers, Kenneth; Shirreff, Lisa M; Ferrell, Douglas E; Deb Adhikary, Nihar R; Fontenot, Jane; Hammond, Holly L; Frieman, Matthew; Grifoni, Alba; Sette, Alessandro; O'Hagan, Derek T; Van Der Most, Robbert; Rappuoli, Rino; Villinger, Francois; Kleanthous, Harry; Rappaport, Jay; Suthar, Mehul S; Veesler, David; Wang, Taia T; King, Neil P; Pulendran, Bali | Science translational medicine | 2022 08 17 | 35976993 | |
| Assessing the quality of tuberculosis care using routine surveillance data: a process evaluation employing the Zero TB Indicator Framework in Mongolia. | Saranjav, Ariunzaya; Parisi, Christina; Zhou, Xin; Dorjnamjil, Khulan; Samdan, Tumurkhuyag; Erdenebaatar, Sumiya; Chuluun, Altantogoskhon; Dalkh, Tserendagva; Ganbaatar, Gantungalag; Brooks, Meredith B; Spiegelman, Donna; Ganmaa, Davaasambuu; Davis, J Lucian | BMJ open | 2022 08 16 | 35973702 | |
| Genome-wide functional perturbation of human microsatellite repeats using engineered zinc finger transcription factors. | Tak, Y Esther; Boulay, Gaylor; Lee, Lukuo; Iyer, Sowmya; Perry, Nicholas T; Schultz, Hayley T; Garcia, Sara P; Broye, Liliane; Horng, Joy E; Rengarajan, Shruthi; Naigles, Beverly; Volorio, Angela; Sander, Jeffry D; Gong, Jingyi; Riggi, Nicolὸ; Joung, J Keith; Rivera, Miguel N | Cell genomics | 2022 Apr 13 | 35967079 | |
| Friendly fungi: symbiosis with commensal Candida albicans. | Shao, Tzu-Yu; Haslam, David B; Bennett, Richard J; Way, Sing Sing | Trends in immunology | 2022 09 | 35961916 | |
| Stromal Vascular Fraction for Osteoarthritis of the Knee Regenerative Engineering. | Ude, Chinedu C; Shah, Shiv; Ogueri, Kenneth S; Nair, Lakshmi S; Laurencin, Cato T | Regenerative engineering and translational medicine | 2022 Jun | 35958164 | |
| Regenerative Engineering Animal Models for Knee Osteoarthritis. | Esdaille, Caldon Jayson; Ude, Chinedu Cletus; Laurencin, Cato T | Regenerative engineering and translational medicine | 2022 Jun | 35958163 | |
| Neuron-Glial Interactions in Health and Brain Cancer. | Pan, Yuan; Monje, Michelle | Advanced biology | 2022 Sep | e2200122 | 35957525 |
| Prokaryotic innate immunity through pattern recognition of conserved viral proteins. | Gao, Linyi Alex; Wilkinson, Max E; Strecker, Jonathan; Makarova, Kira S; Macrae, Rhiannon K; Koonin, Eugene V; Zhang, Feng | Science (New York, N.Y.) | 2022 08 12 | 35951700 | |
| The mechanism of RNA capping by SARS-CoV-2. | Park, Gina J; Osinski, Adam; Hernandez, Genaro; Eitson, Jennifer L; Majumdar, Abir; Tonelli, Marco; Henzler-Wildman, Katie; Pawłowski, Krzysztof; Chen, Zhe; Li, Yang; Schoggins, John W; Tagliabracci, Vincent S | Nature | 2022 09 | 35944563 | |
| Representational drift: Emerging theories for continual learning and experimental future directions. | Driscoll, Laura N; Duncker, Lea; Harvey, Christopher D | Current opinion in neurobiology | 2022 10 | 35939861 | |
| A conserved Bacteroidetes antigen induces anti-inflammatory intestinal T lymphocytes. | Bousbaine, Djenet; Fisch, Laura I; London, Mariya; Bhagchandani, Preksha; Rezende de Castro, Tiago B; Mimee, Mark; Olesen, Scott; Reis, Bernardo S; VanInsberghe, David; Bortolatto, Juliana; Poyet, Mathilde; Cheloha, Ross W; Sidney, John; Ling, Jingjing; Gupta, Aaron; Lu, Timothy K; Sette, Alessandro; Alm, Eric J; Moon, James J; Victora, Gabriel D; Mucida, Daniel; Ploegh, Hidde L; Bilate, Angelina M | Science (New York, N.Y.) | 2022 08 05 | 35926021 | |
| Chronic Leptin Deficiency Improves Tolerance of Physiological Damage and Host-Pathogen Cooperation during Yersinia pseudotuberculosis Infection. | Sanchez, Karina K; Troha, Katia; Mu, Andre; Redford, Samuel E; McCarville, Justin L; Insenga, Arianna; Stengel, Sarah; Lee, Yujung Michelle; Ayres, Janelle S | Infection and immunity | 2022 Sep 15 | 35924898 | |
| Overexpression of NDST1 Attenuates Fibrotic Response in Murine Adipose-Derived Stem Cells. | Otsuka, Takayoshi; Kan, Ho-Man; Mason, Timothy D; Nair, Lakshmi S; Laurencin, Cato T | Stem cells and development | 2022 Dec | 35920108 | |
| Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer. | Byun, Jinyoung; Han, Younghun; Li, Yafang; Xia, Jun; Long, Erping; Choi, Jiyeon; Xiao, Xiangjun; Zhu, Meng; Zhou, Wen; Sun, Ryan; Bossé, Yohan; Song, Zhuoyi; Schwartz, Ann; Lusk, Christine; Rafnar, Thorunn; Stefansson, Kari; Zhang, Tongwu; Zhao, Wei; Pettit, Rowland W; Liu, Yanhong; Li, Xihao; Zhou, Hufeng; Walsh, Kyle M; Gorlov, Ivan; Gorlova, Olga; Zhu, Dakai; Rosenberg, Susan M; Pinney, Susan; Bailey-Wilson, Joan E; Mandal, Diptasri; de Andrade, Mariza; Gaba, Colette; Willey, James C; You, Ming; Anderson, Marshall; Wiencke, John K; Albanes, Demetrius; Lam, Stephan; Tardon, Adonina; Chen, Chu; Goodman, Gary; Bojeson, Stig; Brenner, Hermann; Landi, Maria Teresa; Chanock, Stephen J; Johansson, Mattias; Muley, Thomas; Risch, Angela; Wichmann, H-Erich; Bickeböller, Heike; Christiani, David C; Rennert, Gad; Arnold, Susanne; Field, John K; Shete, Sanjay; Le Marchand, Loic; Melander, Olle; Brunnstrom, Hans; Liu, Geoffrey; Andrew, Angeline S; Kiemeney, Lambertus A; Shen, Hongbing; Zienolddiny, Shanbeh; Grankvist, Kjell; Johansson, Mikael; Caporaso, Neil; Cox, Angela; Hong, Yun-Chul; Yuan, Jian-Min; Lazarus, Philip; Schabath, Matthew B; Aldrich, Melinda C; Patel, Alpa; Lan, Qing; Rothman, Nathaniel; Taylor, Fiona; Kachuri, Linda; Witte, John S; Sakoda, Lori C; Spitz, Margaret; Brennan, Paul; Lin, Xihong; McKay, James; Hung, Rayjean J; Amos, Christopher I | Nature genetics | 2022 Aug | 35915169 | |
| Development of a natural language processing algorithm to extract seizure types and frequencies from the electronic health record. | Decker, Barbara M; Turco, Alexandra; Xu, Jian; Terman, Samuel W; Kosaraju, Nikitha; Jamil, Alisha; Davis, Kathryn A; Litt, Brian; Ellis, Colin A; Khankhanian, Pouya; Hill, Chloe E | Seizure | 2022 Oct | 35882104 | |
| 3D genome, on repeat: Higher-order folding principles of the heterochromatinized repetitive genome. | Haws, Spencer A; Simandi, Zoltan; Barnett, R Jordan; Phillips-Cremins, Jennifer E | Cell | 2022 07 21 | 35868274 | |
| Neurotensin orchestrates valence assignment in the amygdala. | Li, Hao; Namburi, Praneeth; Olson, Jacob M; Borio, Matilde; Lemieux, Mackenzie E; Beyeler, Anna; Calhoon, Gwendolyn G; Hitora-Imamura, Natsuko; Coley, Austin A; Libster, Avraham; Bal, Aneesh; Jin, Xin; Wang, Huan; Jia, Caroline; Choudhury, Sourav R; Shi, Xi; Felix-Ortiz, Ada C; de la Fuente, Verónica; Barth, Vanessa P; King, Hunter O; Izadmehr, Ehsan M; Revanna, Jasmin S; Batra, Kanha; Fischer, Kyle B; Keyes, Laurel R; Padilla-Coreano, Nancy; Siciliano, Cody A; McCullough, Kenneth M; Wichmann, Romy; Ressler, Kerry J; Fiete, Ila R; Zhang, Feng; Li, Yulong; Tye, Kay M | Nature | 2022 08 | 35859170 | |
| ACE2-binding exposes the SARS-CoV-2 fusion peptide to broadly neutralizing coronavirus antibodies. | Low, Jun Siong; Jerak, Josipa; Tortorici, M Alejandra; McCallum, Matthew; Pinto, Dora; Cassotta, Antonino; Foglierini, Mathilde; Mele, Federico; Abdelnabi, Rana; Weynand, Birgit; Noack, Julia; Montiel-Ruiz, Martin; Bianchi, Siro; Benigni, Fabio; Sprugasci, Nicole; Joshi, Anshu; Bowen, John E; Stewart, Cameron; Rexhepaj, Megi; Walls, Alexandra C; Jarrossay, David; Morone, Diego; Paparoditis, Philipp; Garzoni, Christian; Ferrari, Paolo; Ceschi, Alessandro; Neyts, Johan; Purcell, Lisa A; Snell, Gyorgy; Corti, Davide; Lanzavecchia, Antonio; Veesler, David; Sallusto, Federica | Science (New York, N.Y.) | 2022 Aug 12 | 35857703 | |
| Enhancing GAT-3 in thalamic astrocytes promotes resilience to brain injury in rodents. | Cho, Frances S; Vainchtein, Ilia D; Voskobiynyk, Yuliya; Morningstar, Allison R; Aparicio, Francisco; Higashikubo, Bryan; Ciesielska, Agnieszka; Broekaart, Diede W M; Anink, Jasper J; van Vliet, Erwin A; Yu, Xinzhu; Khakh, Baljit S; Aronica, Eleonora; Molofsky, Anna V; Paz, Jeanne T | Science translational medicine | 2022 07 06 | 35857628 | |
| Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines. | Bowen, John E; Addetia, Amin; Dang, Ha V; Stewart, Cameron; Brown, Jack T; Sharkey, William K; Sprouse, Kaitlin R; Walls, Alexandra C; Mazzitelli, Ignacio G; Logue, Jennifer K; Franko, Nicholas M; Czudnochowski, Nadine; Powell, Abigail E; Dellota Jr, Exequiel; Ahmed, Kumail; Ansari, Asefa Shariq; Cameroni, Elisabetta; Gori, Andrea; Bandera, Alessandra; Posavad, Christine M; Dan, Jennifer M; Zhang, Zeli; Weiskopf, Daniela; Sette, Alessandro; Crotty, Shane; Iqbal, Najeeha Talat; Corti, Davide; Geffner, Jorge; Snell, Gyorgy; Grifantini, Renata; Chu, Helen Y; Veesler, David | Science (New York, N.Y.) | 2022 Jul 19 | 35857529 | |
| Structurally derived universal mechanism for the catalytic cycle of the tail-anchored targeting factor Get3. | Fry, Michelle Y; Najdrová, Vladimíra; Maggiolo, Ailiena O; Saladi, Shyam M; Doležal, Pavel; Clemons Jr, William M | Nature structural & molecular biology | 2022 08 | 35851188 | |
| Dynamic influences on the neural encoding of social valence. | Padilla-Coreano, Nancy; Tye, Kay M; Zelikowsky, Moriel | Nature reviews. Neuroscience | 2022 09 | 35831442 | |
| Optical regulation of endogenous RhoA reveals selection of cellular responses by signal amplitude. | Ju, Jeongmin; Lee, Hae Nim; Ning, Lin; Ryu, Hyunjoo; Zhou, Xin X; Chun, Hyeyeon; Lee, Yong Woo; Lee-Richerson, Austin I; Jeong, Cherlhyun; Lin, Michael Z; Seong, Jihye | Cell reports | 2022 07 12 | 35830815 | |
| Transition to a mesenchymal state in neuroblastoma confers resistance to anti-GD2 antibody via reduced expression of ST8SIA1. | Mabe, Nathaniel W; Huang, Min; Dalton, Guillermo N; Alexe, Gabriela; Schaefer, Daniel A; Geraghty, Anna C; Robichaud, Amanda L; Conway, Amy S; Khalid, Delan; Mader, Marius M; Belk, Julia A; Ross, Kenneth N; Sheffer, Michal; Linde, Miles H; Ly, Nghi; Yao, Winnie; Rotiroti, Maria Caterina; Smith, Benjamin A H; Wernig, Marius; Bertozzi, Carolyn R; Monje, Michelle; Mitsiades, Constantine S; Majeti, Ravindra; Satpathy, Ansuman T; Stegmaier, Kimberly; Majzner, Robbie G | Nature cancer | 2022 08 | 35817829 | |
| Context-specific regulation and function of mRNA alternative polyadenylation. | Mitschka, Sibylle; Mayr, Christine | Nature reviews. Molecular cell biology | 2022 Dec | 35798852 | |
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| Pseudomonas aeruginosa clinical blood isolates display significant phenotypic variability. | Scheffler, Robert J; Bratton, Benjamin P; Gitai, Zemer | PloS one | 2022 | 35793311 | |
| Sensitivity of portable low-field magnetic resonance imaging for multiple sclerosis lesions. | Arnold, T Campbell; Tu, Danni; Okar, Serhat V; Nair, Govind; By, Samantha; Kawatra, Karan D; Robert-Fitzgerald, Timothy E; Desiderio, Lisa M; Schindler, Matthew K; Shinohara, Russell T; Reich, Daniel S; Stein, Joel M | NeuroImage. Clinical | 2022 | 35792417 | |
| Towards network-guided neuromodulation for epilepsy. | Piper, Rory J; Richardson, R Mark; Worrell, Gregory; Carmichael, David W; Baldeweg, Torsten; Litt, Brian; Denison, Timothy; Tisdall, Martin M | Brain : a journal of neurology | 2022 Oct 21 | 35771657 | |
| Mild respiratory COVID can cause multi-lineage neural cell and myelin dysregulation. | Fernández-Castañeda, Anthony; Lu, Peiwen; Geraghty, Anna C; Song, Eric; Lee, Myoung-Hwa; Wood, Jamie; O'Dea, Michael R; Dutton, Selena; Shamardani, Kiarash; Nwangwu, Kamsi; Mancusi, Rebecca; Yalçın, Belgin; Taylor, Kathryn R; Acosta-Alvarez, Lehi; Malacon, Karen; Keough, Michael B; Ni, Lijun; Woo, Pamelyn J; Contreras-Esquivel, Daniel; Toland, Angus Martin Shaw; Gehlhausen, Jeff R; Klein, Jon; Takahashi, Takehiro; Silva, Julio; Israelow, Benjamin; Lucas, Carolina; Mao, Tianyang; Peña-Hernández, Mario A; Tabachnikova, Alexandra; Homer, Robert J; Tabacof, Laura; Tosto-Mancuso, Jenna; Breyman, Erica; Kontorovich, Amy; McCarthy, Dayna; Quezado, Martha; Vogel, Hannes; Hefti, Marco M; Perl, Daniel P; Liddelow, Shane; Folkerth, Rebecca; Putrino, David; Nath, Avindra; Iwasaki, Akiko; Monje, Michelle | Cell | 2022 Jul 07 | 35768006 | |
| Dynamic instability of dendrite tips generates the highly branched morphologies of sensory neurons. | Shree, Sonal; Sutradhar, Sabyasachi; Trottier, Olivier; Tu, Yuhai; Liang, Xin; Howard, Jonathon | Science advances | 2022 Jul | 35767611 | |
| Shifting mutational constraints in the SARS-CoV-2 receptor-binding domain during viral evolution. | Starr, Tyler N; Greaney, Allison J; Hannon, William W; Loes, Andrea N; Hauser, Kevin; Dillen, Josh R; Ferri, Elena; Farrell, Ariana Ghez; Dadonaite, Bernadeta; McCallum, Matthew; Matreyek, Kenneth A; Corti, Davide; Veesler, David; Snell, Gyorgy; Bloom, Jesse D | Science (New York, N.Y.) | 2022 07 22 | 35762884 | |
| Identification of Pathogenic Immune Cell Subsets Associated With Checkpoint Inhibitor-Induced Myocarditis. | Zhu, Han; Galdos, Francisco X; Lee, Daniel; Waliany, Sarah; Huang, Yuhsin Vivian; Ryan, Julia; Dang, Katherine; Neal, Joel W; Wakelee, Heather A; Reddy, Sunil A; Srinivas, Sandy; Lin, Lih-Ling; Witteles, Ronald M; Maecker, Holden T; Davis, Mark M; Nguyen, Patricia K; Wu, Sean M | Circulation | 2022 Jul 26 | 35762356 | |
| Cognitive experience alters cortical involvement in goal-directed navigation. | Arlt, Charlotte; Barroso-Luque, Roberto; Kira, Shinichiro; Bruno, Carissa A; Xia, Ningjing; Chettih, Selmaan N; Soares, Sofia; Pettit, Noah L; Harvey, Christopher D | eLife | 2022 06 23 | 35735909 | |
| The structures and functions of correlations in neural population codes. | Panzeri, Stefano; Moroni, Monica; Safaai, Houman; Harvey, Christopher D | Nature reviews. Neuroscience | 2022 09 | 35732917 | |
| A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities. | Shaffer, Justin P; Carpenter, Carolina S; Martino, Cameron; Salido, Rodolfo A; Minich, Jeremiah J; Bryant, MacKenzie; Sanders, Karenina; Schwartz, Tara; Humphrey, Gregory; Swafford, Austin D; Knight, Rob | BioTechniques | 2022 06 | 35713407 | |
| Directed Evolution of a Bright Variant of mCherry: Suppression of Nonradiative Decay by Fluorescence Lifetime Selections. | Mukherjee, Srijit; Manna, Premashis; Hung, Sheng-Ting; Vietmeyer, Felix; Friis, Pia; Palmer, Amy E; Jimenez, Ralph | The journal of physical chemistry. B | 2022 06 30 | 35709514 | |
| Immunization with a self-assembling nanoparticle vaccine displaying EBV gH/gL protects humanized mice against lethal viral challenge. | Malhi, Harman; Homad, Leah J; Wan, Yu-Hsin; Poudel, Bibhav; Fiala, Brooke; Borst, Andrew J; Wang, Jing Yang; Walkey, Carl; Price, Jason; Wall, Abigail; Singh, Suruchi; Moodie, Zoe; Carter, Lauren; Handa, Simran; Correnti, Colin E; Stoddard, Barry L; Veesler, David; Pancera, Marie; Olson, James; King, Neil P; McGuire, Andrew T | Cell reports. Medicine | 2022 06 21 | 35705092 | |
| A brainstem circuit for nausea suppression. | Zhang, Chuchu; Vincelette, Lindsay K; Reimann, Frank; Liberles, Stephen D | Cell reports | 2022 Jun 14 | 35705049 | |
| Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings. | Cantú, Victor J; Belda-Ferre, Pedro; Salido, Rodolfo A; Tsai, Rebecca; Austin, Brett; Jordan, William; Asudani, Menka; Walster, Amanda; Magallanes, Celestine G; Valentine, Holly; Manjoonian, Araz; Wijaya, Carrissa; Omaleki, Vinton; Sanders, Karenina; Aigner, Stefan; Baer, Nathan A; Betty, Maryann; Castro-Martínez, Anelizze; Cheung, Willi; Crescini, Evelyn S; De Hoff, Peter; Eisner, Emily; Hakim, Abbas; Kapadia, Bhavika; Lastrella, Alma L; Lawrence, Elijah S; Ngo, Toan T; Ostrander, Tyler; Sathe, Shashank; Seaver, Phoebe; Smoot, Elizabeth W; Carlin, Aaron F; Yeo, Gene W; Laurent, Louise C; Manlutac, Anna Liza; Fielding-Miller, Rebecca; Knight, Rob | mSystems | 2022 Aug 30 | 35703437 | |
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| mirTarRnaSeq: An R/Bioconductor Statistical Package for miRNA-mRNA Target Identification and Interaction Analysis. | Movassagh, Mercedeh; Morton, Sarah U; Hehnly, Christine; Smith, Jasmine; Doan, Trang T; Irizarry, Rafael; Broach, James R; Schiff, Steven J; Bailey, Jeffrey A; Paulson, Joseph N | BMC genomics | 2022 Jun 13 | 35698050 | |
| Lysosome lipid signalling from the periphery to neurons regulates longevity. | Savini, Marzia; Folick, Andrew; Lee, Yi-Tang; Jin, Feng; Cuevas, André; Tillman, Matthew C; Duffy, Jonathon D; Zhao, Qian; Neve, Isaiah A; Hu, Pei-Wen; Yu, Yong; Zhang, Qinghao; Ye, Youqiong; Mair, William B; Wang, Jin; Han, Leng; Ortlund, Eric A; Wang, Meng C | Nature cell biology | 2022 Jun | 35681008 | |
| Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli. | Marciano, David C; Wang, Chen; Hsu, Teng-Kuei; Bourquard, Thomas; Atri, Benu; Nehring, Ralf B; Abel, Nicholas S; Bowling, Elizabeth A; Chen, Taylor J; Lurie, Pamela D; Katsonis, Panagiotis; Rosenberg, Susan M; Herman, Christophe; Lichtarge, Olivier | Nature communications | 2022 06 09 | 35680894 | |
| Shared and specialized coding across posterior cortical areas for dynamic navigation decisions. | Tseng, Shih-Yi; Chettih, Selmaan N; Arlt, Charlotte; Barroso-Luque, Roberto; Harvey, Christopher D | Neuron | 2022 Aug 03 | 35679861 | |
| Robust variation in infant gut microbiome assembly across a spectrum of lifestyles. | Olm, Matthew R; Dahan, Dylan; Carter, Matthew M; Merrill, Bryan D; Yu, Feiqiao B; Jain, Sunit; Meng, Xiandong; Tripathi, Surya; Wastyk, Hannah; Neff, Norma; Holmes, Susan; Sonnenburg, Erica D; Jha, Aashish R; Sonnenburg, Justin L | Science (New York, N.Y.) | 2022 06 10 | 35679413 | |
| Structure of cytoplasmic ring of nuclear pore complex by integrative cryo-EM and AlphaFold. | Fontana, Pietro; Dong, Ying; Pi, Xiong; Tong, Alexander B; Hecksel, Corey W; Wang, Longfei; Fu, Tian-Min; Bustamante, Carlos; Wu, Hao | Science (New York, N.Y.) | 2022 06 10 | 35679401 | |
| RNA polymerase inaccuracy underlies SARS-CoV-2 variants and vaccine heterogeneity. | Herman, Christophe; Bradley, Catherine; Gordon, Alasdair; Wang, Chen; Cooke, Matthew; Kohrn, Brendan; Kennedy, Scott; Lichtarge, Olivier; Ronca, Shannon | Research square | 2022 Jun 02 | 35677076 | |
| Imprinted antibody responses against SARS-CoV-2 Omicron sublineages. | Park, Young-Jun; Pinto, Dora; Walls, Alexandra C; Liu, Zhuoming; De Marco, Anna; Benigni, Fabio; Zatta, Fabrizia; Silacci-Fregni, Chiara; Bassi, Jessica; Sprouse, Kaitlin R; Addetia, Amin; Bowen, John E; Stewart, Cameron; Giurdanella, Martina; Saliba, Christian; Guarino, Barbara; Schmid, Michael A; Franko, Nicholas; Logue, Jennifer; Dang, Ha V; Hauser, Kevin; di Iulio, Julia; Rivera, William; Schnell, Gretja; Rajesh, Anushka; Zhou, Jiayi; Farhat, Nisar; Kaiser, Hannah; Montiel-Ruiz, Martin; Noack, Julia; Lempp, Florian A; Janer, Javier; Abdelnabi, Rana; Maes, Piet; Ferrari, Paolo; Ceschi, Alessandro; Giannini, Olivier; Dias de Melo, Guilherme; Kergoat, Lauriane; Bourhy, Hervé; Neyts, Johan; Soriaga, Leah; Purcell, Lisa A; Snell, Gyorgy; Whelan, Sean P J; Lanzavecchia, Antonio; Virgin, Herbert W; Piccoli, Luca; Chu, Helen; Pizzuto, Matteo Samuele; Corti, Davide; Veesler, David | bioRxiv : the preprint server for biology | 2022 Aug 22 | 35677069 | |
| Pregnancy enables antibody protection against intracellular infection. | Erickson, John J; Archer-Hartmann, Stephanie; Yarawsky, Alexander E; Miller, Jeanette L C; Seveau, Stephanie; Shao, Tzu-Yu; Severance, Ashley L; Miller-Handley, Hilary; Wu, Yuehong; Pham, Giang; Wasik, Brian R; Parrish, Colin R; Hu, Yueh-Chiang; Lau, Joseph T Y; Azadi, Parastoo; Herr, Andrew B; Way, Sing Sing | Nature | 2022 06 | 35676476 | |
| Cohesin-mediated loop anchors confine the locations of human replication origins. | Emerson, Daniel J; Zhao, Peiyao A; Cook, Ashley L; Barnett, R Jordan; Klein, Kyle N; Saulebekova, Dalila; Ge, Chunmin; Zhou, Linda; Simandi, Zoltan; Minsk, Miriam K; Titus, Katelyn R; Wang, Weitao; Gong, Wanfeng; Zhang, Di; Yang, Liyan; Venev, Sergey V; Gibcus, Johan H; Yang, Hongbo; Sasaki, Takayo; Kanemaki, Masato T; Yue, Feng; Dekker, Job; Chen, Chun-Long; Gilbert, David M; Phillips-Cremins, Jennifer E | Nature | 2022 06 | 35676475 | |
| Stress-Induced Mutagenesis, Gambler Cells, and Stealth Targeting Antibiotic-Induced Evolution. | Pribis, John P; Zhai, Yin; Hastings, P J; Rosenberg, Susan M | mBio | 2022 06 28 | 35658528 | |
| UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions. | Mestre, Mario Rodríguez; Gao, Linyi Alex; Shah, Shiraz A; López-Beltrán, Adrián; González-Delgado, Alejandro; Martínez-Abarca, Francisco; Iranzo, Jaime; Redrejo-Rodríguez, Modesto; Zhang, Feng; Toro, Nicolás | Nucleic acids research | 2022 06 24 | 35648479 | |
| Engineered AAVs for non-invasive gene delivery to rodent and non-human primate nervous systems. | Chen, Xinhong; Ravindra Kumar, Sripriya; Adams, Cameron D; Yang, Daping; Wang, Tongtong; Wolfe, Damien A; Arokiaraj, Cynthia M; Ngo, Victoria; Campos, Lillian J; Griffiths, Jessica A; Ichiki, Takako; Mazmanian, Sarkis K; Osborne, Peregrine B; Keast, Janet R; Miller, Cory T; Fox, Andrew S; Chiu, Isaac M; Gradinaru, Viviana | Neuron | 2022 Jul 20 | 35643078 | |
| Normative intracranial EEG maps epileptogenic tissues in focal epilepsy. | Bernabei, John M; Sinha, Nishant; Arnold, T Campbell; Conrad, Erin; Ong, Ian; Pattnaik, Akash R; Stein, Joel M; Shinohara, Russell T; Lucas, Timothy H; Bassett, Dani S; Davis, Kathryn A; Litt, Brian | Brain : a journal of neurology | 2022 06 30 | 35640886 | |
| Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase. | Sfiligoi, Igor; Armstrong, George; Gonzalez, Antonio; McDonald, Daniel; Knight, Rob | mSystems | 2022 Jun 28 | 35638356 | |
| Invariant representation of physical stability in the human brain. | Pramod, R T; Cohen, Michael A; Tenenbaum, Joshua B; Kanwisher, Nancy | eLife | 2022 05 30 | 35635277 | |
| Proteomic Network Analysis of Bronchoalveolar Lavage Fluid in Ex-Smokers to Discover Implicated Protein Targets and Novel Drug Treatments for Chronic Obstructive Pulmonary Disease. | Mammen, Manoj J; Tu, Chengjian; Morris, Matthew C; Richman, Spencer; Mangione, William; Falls, Zackary; Qu, Jun; Broderick, Gordon; Sethi, Sanjay; Samudrala, Ram | Pharmaceuticals (Basel, Switzerland) | 2022 May 01 | 35631392 | |
| Laser particle activated cell sorting in microfluidics. | Dannenberg, Paul H; Kang, Jisoo; Martino, Nicola; Kashiparekh, Anokhi; Forward, Sarah; Wu, Jiamin; Liapis, Andreas C; Wang, Jie; Yun, Seok-Hyun | Lab on a chip | 2022 06 14 | 35621381 | |
| Potent monoclonal antibody-mediated neutralization of a divergent Hendra virus variant. | Wang, Zhaoqian; Dang, Ha V; Amaya, Moushimi; Xu, Yan; Yin, Randy; Yan, Lianying; Hickey, Andrew C; Annand, Edward J; Horsburgh, Bethany A; Reid, Peter A; Smith, Ina; Eden, John-Sebastian; Xu, Kai; Broder, Christopher C; Veesler, David | Proceedings of the National Academy of Sciences of the United States of America | 2022 May 31 | 35617431 | |
| In vivo non-invasive confocal fluorescence imaging beyond 1,700 nm using superconducting nanowire single-photon detectors. | Wang, Feifei; Ren, Fuqiang; Ma, Zhuoran; Qu, Liangqiong; Gourgues, Ronan; Xu, Chun; Baghdasaryan, Ani; Li, Jiachen; Zadeh, Iman Esmaeil; Los, Johannes W N; Fognini, Andreas; Qin-Dregely, Jessie; Dai, Hongjie | Nature nanotechnology | 2022 06 | 35606441 | |
| Restoration of Vision and Retinal Responses After Adeno-Associated Virus-Mediated Optogenetic Therapy in Blind Dogs. | Nikonov, Sergei; Aravand, Puya; Lyubarsky, Arkady; Nikonov, Roman; Luo, Angela J; Wei, Zhangyong; Maguire, Albert M; Phelps, Nicholas T; Shpylchak, Ivan; Willett, Keirnan; Aleman, Tomas S; Huckfeldt, Rachel M; Ramachandran, Pavitra S; Bennett, Jean | Translational vision science & technology | 2022 05 02 | 35604672 | |
| Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding. | Song, Se Jin; Wang, Jincheng; Martino, Cameron; Jiang, Lingjing; Thompson, Wesley K; Shenhav, Liat; McDonald, Daniel; Marotz, Clarisse; Harris, Paul R; Hernandez, Caroll D; Henderson, Nora; Ackley, Elizabeth; Nardella, Deanna; Gillihan, Charles; Montacuti, Valentina; Schweizer, William; Jay, Melanie; Combellick, Joan; Sun, Haipeng; Garcia-Mantrana, Izaskun; Gil Raga, Fernando; Collado, Maria Carmen; Rivera-Viñas, Juana I; Campos-Rivera, Maribel; Ruiz-Calderon, Jean F; Knight, Rob; Dominguez-Bello, Maria Gloria | Med (New York, N.Y.) | 2021 Aug 13 | 35590169 | |
| Neuronal hyperexcitability drives central and peripheral nervous system tumor progression in models of neurofibromatosis-1. | Anastasaki, Corina; Mo, Juan; Chen, Ji-Kang; Chatterjee, Jit; Pan, Yuan; Scheaffer, Suzanne M; Cobb, Olivia; Monje, Michelle; Le, Lu Q; Gutmann, David H | Nature communications | 2022 05 19 | 35589737 | |
| Candida albicans oscillating UME6 expression during intestinal colonization primes systemic Th17 protective immunity. | Shao, Tzu-Yu; Kakade, Pallavi; Witchley, Jessica N; Frazer, Corey; Murray, Kathryn L; Ene, Iuliana V; Haslam, David B; Hagan, Thomas; Noble, Suzanne M; Bennett, Richard J; Way, Sing Sing | Cell reports | 2022 May 17 | 35584674 | |
| SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp. | Cantú, Victor J; Salido, Rodolfo A; Huang, Shi; Rahman, Gibraan; Tsai, Rebecca; Valentine, Holly; Magallanes, Celestine G; Aigner, Stefan; Baer, Nathan A; Barber, Tom; Belda-Ferre, Pedro; Betty, Maryann; Bryant, MacKenzie; Casas Maya, Martín; Castro-Martínez, Anelizze; Chacón, Marisol; Cheung, Willi; Crescini, Evelyn S; De Hoff, Peter; Eisner, Emily; Farmer, Sawyer; Hakim, Abbas; Kohn, Laura; Lastrella, Alma L; Lawrence, Elijah S; Morgan, Sydney C; Ngo, Toan T; Nouri, Alhakam; Plascencia, Ashley; Ruiz, Christopher A; Sathe, Shashank; Seaver, Phoebe; Shwartz, Tara; Smoot, Elizabeth W; Ostrander, R Tyler; Valles, Thomas; Yeo, Gene W; Laurent, Louise C; Fielding-Miller, Rebecca; Knight, Rob | mSystems | 2022 Jun 28 | 35575492 | |
| Identifying Protein Features and Pathways Responsible for Toxicity Using Machine Learning and Tox21: Implications for Predictive Toxicology. | Moukheiber, Lama; Mangione, William; Moukheiber, Mira; Maleki, Saeed; Falls, Zackary; Gao, Mingchen; Samudrala, Ram | Molecules (Basel, Switzerland) | 2022 May 08 | 35566372 | |
| Pseudomonas aeruginosa distinguishes surfaces by stiffness using retraction of type IV pili. | Koch, Matthias D; Black, Matthew E; Han, Endao; Shaevitz, Joshua W; Gitai, Zemer | Proceedings of the National Academy of Sciences of the United States of America | 2022 05 17 | 35561220 | |
| Functional analysis of rare genetic variants in complement factor I in advanced age-related macular degeneration. | Java, Anuja; Pozzi, Nicola; Schroeder, Molly C; Hu, Zheng; Huan, Tianxiao; Seddon, Johanna M; Atkinson, John | Human molecular genetics | 2022 Oct 28 | 35531992 | |
| The Mechanism of Metallosis After Total Hip Arthroplasty. | Ude, Chinedu C; Esdaille, Caldon J; Ogueri, Kenneth S; Ho-Man, Kan; Laurencin, Samuel J; Nair, Lakshmi S; Laurencin, Cato T | Regenerative engineering and translational medicine | 2021 Sep | 35530571 | |
| The Mettl3 epitranscriptomic writer amplifies p53 stress responses. | Raj, Nitin; Wang, Mengxiong; Seoane, Jose A; Zhao, Richard L; Kaiser, Alyssa M; Moonie, Nancie A; Demeter, Janos; Boutelle, Anthony M; Kerr, Craig H; Mulligan, Abigail S; Moffatt, Clare; Zeng, Shelya X; Lu, Hua; Barna, Maria; Curtis, Christina; Chang, Howard Y; Jackson, Peter K; Attardi, Laura D | Molecular cell | 2022 07 07 | 35512709 | |
| ANALYSIS OF "LEARN-AS-YOU-GO" (LAGO) STUDIES. | Nevo, Daniel; Lok, Judith J; Spiegelman, Donna | Annals of statistics | 2021 Apr | 35510045 | |
| Sub-3-Å cryo-EM structure of RNA enabled by engineered homomeric self-assembly. | Liu, Di; Thélot, François A; Piccirilli, Joseph A; Liao, Maofu; Yin, Peng | Nature methods | 2022 May | 35501384 | |
| Maladaptive myelination promotes generalized epilepsy progression. | Knowles, Juliet K; Xu, Haojun; Soane, Caroline; Batra, Ankita; Saucedo, Tristan; Frost, Eleanor; Tam, Lydia T; Fraga, Danielle; Ni, Lijun; Villar, Katlin; Talmi, Sydney; Huguenard, John R; Monje, Michelle | Nature neuroscience | 2022 May | 35501379 | |
| It's a DoG-eat-DoG world-altered transcriptional mechanisms drive downstream-of-gene (DoG) transcript production. | Morgan, Marc; Shiekhattar, Ramin; Shilatifard, Ali; Lauberth, Shannon M | Molecular cell | 2022 06 02 | 35487209 | |
| Thermodynamically coupled biosensors for detecting neutralizing antibodies against SARS-CoV-2 variants. | Zhang, Jason Z; Yeh, Hsien-Wei; Walls, Alexandra C; Wicky, Basile I M; Sprouse, Kaitlin R; VanBlargan, Laura A; Treger, Rebecca; Quijano-Rubio, Alfredo; Pham, Minh N; Kraft, John C; Haydon, Ian C; Yang, Wei; DeWitt, Michelle; Bowen, John E; Chow, Cameron M; Carter, Lauren; Ravichandran, Rashmi; Wener, Mark H; Stewart, Lance; Veesler, David; Diamond, Michael S; Greninger, Alexander L; Koelle, David M; Baker, David | Nature biotechnology | 2022 Apr 28 | 35484405 | |
| Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype. | Martino, Cameron; McDonald, Daniel; Cantrell, Kalen; Dilmore, Amanda Hazel; Vázquez-Baeza, Yoshiki; Shenhav, Liat; Shaffer, Justin P; Rahman, Gibraan; Armstrong, George; Allaband, Celeste; Song, Se Jin; Knight, Rob | mSystems | 2022 Jun 28 | 35477286 | |
| In Vitro Reconstitution of Microtubule Dynamics and Severing Imaged by Label-Free Interference-Reflection Microscopy. | Kuo, Yin-Wei; Howard, Jonathon | Methods in molecular biology (Clifton, N.J.) | 2022 | 35476326 | |
| Cohesin-dependence of neuronal gene expression relates to chromatin loop length. | Calderon, Lesly; Weiss, Felix D; Beagan, Jonathan A; Oliveira, Marta S; Georgieva, Radina; Wang, Yi-Fang; Carroll, Thomas S; Dharmalingam, Gopuraja; Gong, Wanfeng; Tossell, Kyoko; de Paola, Vincenzo; Whilding, Chad; Ungless, Mark A; Fisher, Amanda G; Phil | eLife | 2022 Apr 26 | 35471149 | |
| Efficacy of Cathelicidin-Mimetic Antimicrobial Peptoids against Staphylococcus aureus. | Benjamin, Aaron B; Moule, Madeleine G; Didwania, Maruti K; Hardy, Jonathan; Saenkham-Huntsinger, Panatda; Sule, Preeti; Nielsen, Josefine Eilsø; Lin, Jennifer S; Contag, Christopher H; Barron, Annelise E; Cirillo, Jeffrey D | Microbiology spectrum | 2022 Apr 25 | 35467395 | |
| Hippocampal place codes are gated by behavioral engagement. | Pettit, Noah L; Yuan, Xintong C; Harvey, Christopher D | Nature neuroscience | 2022 May | 35449355 | |
| Snf7 spirals sense and alter membrane curvature. | Jukic, Nebojsa; Perrino, Alma P; Humbert, Frédéric; Roux, Aurélien; Scheuring, Simon | Nature communications | 2022 04 21 | 35449207 | |
| Computational design of mechanically coupled axle-rotor protein assemblies. | Courbet, A; Hansen, J; Hsia, Y; Bethel, N; Park, Y-J; Xu, C; Moyer, A; Boyken, S E; Ueda, G; Nattermann, U; Nagarajan, D; Silva, D-A; Sheffler, W; Quispe, J; Nord, A; King, N; Bradley, P; Veesler, D; Kollman, J; Baker, D | Science (New York, N.Y.) | 2022 04 22 | 35446645 | |
| Targeting calcium-mediated inter-organellar crosstalk in cardiac diseases. | Hulsurkar, Mohit M; Lahiri, Satadru K; Karch, Jason; Wang, Meng C; Wehrens, Xander H T | Expert opinion on therapeutic targets | 2022 Apr | 35426759 | |
| Ketogenic diet and chemotherapy combine to disrupt pancreatic cancer metabolism and growth. | Yang, Lifeng; TeSlaa, Tara; Ng, Serina; Nofal, Michel; Wang, Lin; Lan, Taijin; Zeng, Xianfeng; Cowan, Alexis; McBride, Matthew; Lu, Wenyun; Davidson, Shawn; Liang, Gaoyang; Oh, Tae Gyu; Downes, Michael; Evans, Ronald; Von Hoff, Daniel; Guo, Jessie Yanxian | Med (New York, N.Y.) | 2022 02 11 | 35425930 | |
| Compact Quantum-Dot Microbeads with Sub-Nanometer Emission Linewidth. | Kim, Kwon-Hyeon; Dannenberg, Paul H; Yan, Hao; Cho, Sangyeon; Yun, Seok-Hyun | Advanced functional materials | 2021 Nov 25 | 35418816 | |
| Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. | Hunt, Andrew C; Case, James Brett; Park, Young-Jun; Cao, Longxing; Wu, Kejia; Walls, Alexandra C; Liu, Zhuoming; Bowen, John E; Yeh, Hsien-Wei; Saini, Shally; Helms, Louisa; Zhao, Yan Ting; Hsiang, Tien-Ying; Starr, Tyler N; Goreshnik, Inna; Kozodoy, Lisa; Carter, Lauren; Ravichandran, Rashmi; Green, Lydia B; Matochko, Wadim L; Thomson, Christy A; Vögeli, Bastian; Krüger, Antje; VanBlargan, Laura A; Chen, Rita E; Ying, Baoling; Bailey, Adam L; Kafai, Natasha M; Boyken, Scott E; Ljubetič, Ajasja; Edman, Natasha; Ueda, George; Chow, Cameron M; Johnson, Max; Addetia, Amin; Navarro, Mary Jane; Panpradist, Nuttada; Gale Jr, Michael; Freedman, Benjamin S; Bloom, Jesse D; Ruohola-Baker, Hannele; Whelan, Sean P J; Stewart, Lance; Diamond, Michael S; Veesler, David; Jewett, Michael C; Baker, David | Science translational medicine | 2022 Apr 12 | 35412328 | |
| Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission. | Karthikeyan, Smruthi; Levy, Joshua I; De Hoff, Peter; Humphrey, Greg; Birmingham, Amanda; Jepsen, Kristen; Farmer, Sawyer; Tubb, Helena M; Valles, Tommy; Tribelhorn, Caitlin E; Tsai, Rebecca; Aigner, Stefan; Sathe, Shashank; Moshiri, Niema; Henson, Benjam | medRxiv : the preprint server for health sciences | 2022 Apr 04 | 35411350 | |
| Seizure Detection in Continuous Inpatient EEG: A Comparison of Human vs Automated Review. | Ganguly, Taneeta Mindy; Ellis, Colin A; Tu, Danni; Shinohara, Russell T; Davis, Kathryn A; Litt, Brian; Pathmanathan, Jay | Neurology | 2022 05 31 | 35410905 | |
| Regenerative Engineering for Knee Osteoarthritis Treatment: Biomaterials and Cell-Based Technologies. | Escobar Ivirico, Jorge L; Bhattacharjee, Maumita; Kuyinu, Emmanuel; Nair, Lakshmi S; Laurencin, Cato T | Engineering (Beijing, China) | 2017 Feb | 35392109 | |
| Structure-based design of stabilized recombinant influenza neuraminidase tetramers. | Ellis, Daniel; Lederhofer, Julia; Acton, Oliver J; Tsybovsky, Yaroslav; Kephart, Sally; Yap, Christina; Gillespie, Rebecca A; Creanga, Adrian; Olshefsky, Audrey; Stephens, Tyler; Pettie, Deleah; Murphy, Michael; Sydeman, Claire; Ahlrichs, Maggie; Chan, Si | Nature communications | 2022 04 05 | 35383176 | |
| Characterizing the oral and distal gut microbiota of the threatened southern sea otter (Enhydra lutris nereis) to enhance conservation practice. | Dudek, Natasha K; Switzer, Alexandra D; Costello, Elizabeth K; Murray, Michael J; Tomoleoni, Joseph A; Staedler, Michelle M; Tinker, M Tim; Relman, David A | Conservation science and practice | 2022 Apr | 35382031 | |
| High-precision tumor resection down to few-cell level guided by NIR-IIb molecular fluorescence imaging. | Wang, Feifei; Qu, Liangqiong; Ren, Fuqiang; Baghdasaryan, Ani; Jiang, Yingying; Hsu, RuSiou; Liang, Peng; Li, Jiachen; Zhu, Guanzhou; Ma, Zhuoran; Dai, Hongjie | Proceedings of the National Academy of Sciences of the United States of America | 2022 04 12 | 35380898 | |
| Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. | Zhu, Qiyun; Huang, Shi; Gonzalez, Antonio; McGrath, Imran; McDonald, Daniel; Haiminen, Niina; Armstrong, George; Vázquez-Baeza, Yoshiki; Yu, Julian; Kuczynski, Justin; Sepich-Poore, Gregory D; Swafford, Austin D; Das, Promi; Shaffer, Justin P; Lejzerowicz | mSystems | 2022 Apr 26 | 35369727 | |
| Sex differences in stress-induced alcohol intake: a review of preclinical studies focused on amygdala and inflammatory pathways. | Mineur, Yann S; Garcia-Rivas, Vernon; Thomas, Merrilee A; Soares, Alexa R; McKee, Sherry A; Picciotto, Marina R | Psychopharmacology | 2022 Mar 31 | 35359158 | |
| MAPK signaling and a mobile scaffold complex regulate AMPA receptor transport to modulate synaptic strength. | Hoerndli, Frédéric J; Brockie, Penelope J; Wang, Rui; Mellem, Jerry E; Kallarackal, Angy; Doser, Rachel L; Pierce, Dayton M; Madsen, David M; Maricq, Andres V | Cell reports | 2022 Mar 29 | 110577 | 35354038 |
| Formation of cellular close-ended tunneling nanotubes through mechanical deformation. | Chang, Minhyeok; Lee, O-Chul; Bu, Gayun; Oh, Jaeho; Yunn, Na-Oh; Ryu, Sung Ho; Kwon, Hyung-Bae; Kolomeisky, Anatoly B; Shim, Sang-Hee; Doh, Junsang; Jeon, Jae-Hyung; Lee, Jong-Bong | Science advances | 2022 Apr | 35353579 | |
| A neural population selective for song in human auditory cortex. | Norman-Haignere, Sam V; Feather, Jenelle; Boebinger, Dana; Brunner, Peter; Ritaccio, Anthony; McDermott, Josh H; Schalk, Gerwin; Kanwisher, Nancy | Current biology : CB | 2022 Mar 28 | 35349804 | |
| Transmembrane protein ATG-9 links presynaptic autophagy with the synaptic vesicle cycle. | Yang, Sisi; Colón-Ramos, Daniel A | Autophagy | 2022 07 | 35349396 | |
| Isolation and Profiling of Human Primary Mesenteric Arterial Endothelial Cells at the Transcriptome Level. | Malhi, Naseeb Kaur; Luo, Yingjun; Tang, Xiaofang; Sriram, Kiran; Calandrelli, Riccardo; Zhong, Sheng; Chen, Zhen Bouman | Journal of visualized experiments : JoVE | 2022 03 14 | 35343966 | |
| A framework For brain atlases: Lessons from seizure dynamics. | Revell, Andrew Y; Silva, Alexander B; Arnold, T Campbell; Stein, Joel M; Das, Sandhitsu R; Shinohara, Russell T; Bassett, Dani S; Litt, Brian; Davis, Kathryn A | NeuroImage | 2022 07 01 | 35339683 | |
| CRISPR activation screen identifies BCL-2 proteins and B3GNT2 as drivers of cancer resistance to T cell-mediated cytotoxicity. | Joung, Julia; Kirchgatterer, Paul C; Singh, Ankita; Cho, Jang H; Nety, Suchita P; Larson, Rebecca C; Macrae, Rhiannon K; Deasy, Rebecca; Tseng, Yuen-Yi; Maus, Marcela V; Zhang, Feng | Nature communications | 2022 03 25 | 35338135 | |
| Chromatin domain alterations linked to 3D genome organization in a large cohort of schizophrenia and bipolar disorder brains. | Girdhar, Kiran; Hoffman, Gabriel E; Bendl, Jaroslav; Rahman, Samir; Dong, Pengfei; Liao, Will; Hauberg, Mads E; Sloofman, Laura; Brown, Leanne; Devillers, Olivia; Kassim, Bibi S; Wiseman, Jennifer R; Park, Royce; Zharovsky, Elizabeth; Jacobov, Rivky; Flatow, Elie; Kozlenkov, Alexey; Gilgenast, Thomas; Johnson, Jessica S; Couto, Lizette; Peters, Mette A; Phillips-Cremins, Jennifer E; Hahn, Chang-Gyu; Gur, Raquel E; Tamminga, Carol A; Lewis, David A; Haroutunian, Vahram; PsychENCODE Consortium; Dracheva, Stella; Lipska, Barbara K; Marenco, Stefano; Kundakovic, Marija; Fullard, John F; Jiang, Yan; Roussos, Panos; Akbarian, Schahram | Nature neuroscience | 2022 04 | 35332326 | |
| Localized glucose import, glycolytic processing, and mitochondria generate a focused ATP burst to power basement-membrane invasion. | Garde, Aastha; Kenny, Isabel W; Kelley, Laura C; Chi, Qiuyi; Mutlu, Ayse Sena; Wang, Meng C; Sherwood, David R | Developmental cell | 2022 03 28 | 35316617 | |
| Omicron BA.1 and BA.2 neutralizing activity elicited by a comprehensive panel of human vaccines. | Bowen, John E; Sprouse, Kaitlin R; Walls, Alexandra C; Mazzitelli, Ignacio G; Logue, Jennifer K; Franko, Nicholas M; Ahmed, Kumail; Shariq, Asefa; Cameroni, Elisabetta; Gori, Andrea; Bandera, Alessandra; Posavad, Christine M; Dan, Jennifer M; Zhang, Zeli; | bioRxiv : the preprint server for biology | 2022 Mar 16 | 35313570 | |
| A light-gated transcriptional recorder for detecting cell-cell contacts. | Cho, Kelvin F; Gillespie, Shawn M; Kalogriopoulos, Nicholas A; Quezada, Michael A; Jacko, Martin; Monje, Michelle; Ting, Alice Y | eLife | 2022 03 21 | 35311648 | |
| Cerebrospinal fluid regulates skull bone marrow niches via direct access through dural channels. | Mazzitelli, Jose A; Smyth, Leon C D; Cross, Kevin A; Dykstra, Taitea; Sun, Jerry; Du, Siling; Mamuladze, Tornike; Smirnov, Igor; Rustenhoven, Justin; Kipnis, Jonathan | Nature neuroscience | 2022 May | 35301477 | |
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| Ileitis-associated tertiary lymphoid organs arise at lymphatic valves and impede mesenteric lymph flow in response to tumor necrosis factor. | Czepielewski, Rafael S; Erlich, Emma C; Onufer, Emily J; Young, Shannon; Saunders, Brian T; Han, Yong-Hyun; Wohltmann, Mary; Wang, Peter L; Kim, Ki-Wook; Kumar, Shashi; Hsieh, Chyi-Song; Scallan, Joshua P; Yang, Ying; Zinselmeyer, Bernd H; Davis, Michael | Immunity | 2021 12 14 | 34788601 | |
| Selective responses to faces, scenes, and bodies in the ventral visual pathway of infants. | Kosakowski, Heather L; Cohen, Michael A; Takahashi, Atsushi; Keil, Boris; Kanwisher, Nancy; Saxe, Rebecca | Current biology : CB | 2022 Jan 24 | 34784506 | |
| Differential adhesion regulates neurite placement via a retrograde zippering mechanism. | Sengupta, Titas; Koonce, Noelle L; Vázquez-Martínez, Nabor; Moyle, Mark W; Duncan, Leighton H; Emerson, Sarah E; Han, Xiaofei; Shao, Lin; Wu, Yicong; Santella, Anthony; Fan, Li; Bao, Zhirong; Mohler, William A; Shroff, Hari; Colón-Ramos, Daniel A | eLife | 2021 11 16 | 34783657 | |
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| Genomic mapping of DNA-repair reaction intermediates in living cells with engineered DNA structure-trap proteins. | Liu, Jingjing; Mei, Qian; Nimer, Sadeieh; Fitzgerald, Devon M; Rosenberg, Susan M | Methods in enzymology | 2021 | 34776211 | |
| Defining genome-wide CRISPR-Cas genome-editing nuclease activity with GUIDE-seq. | Malinin, Nikolay L; Lee, GaHyun; Lazzarotto, Cicera R; Li, Yichao; Zheng, Zongli; Nguyen, Nhu T; Liebers, Matthew; Topkar, Ved V; Iafrate, A John; Le, Long P; Aryee, Martin J; Joung, J Keith; Tsai, Shengdar Q | Nature protocols | 2021 Nov 12 | 34773119 | |
| Spatial dispersion analysis of LGE-CMR for prediction of ventricular arrhythmias in patients with cardiac sarcoidosis. | Aronis, Konstantinos N; Okada, David R; Xie, Eric; Daimee, Usama A; Prakosa, Adityo; Gilotra, Nisha A; Wu, Katherine C; Trayanova, Natalia; Chrispin, Jonathan | Pacing and clinical electrophysiology : PACE | 2021 Dec | 34766627 | |
| A data-driven framework for mapping domains of human neurobiology. | Beam, Elizabeth; Potts, Christopher; Poldrack, Russell A; Etkin, Amit | Nature neuroscience | 2021 Dec | 34764476 | |
| Impact of the Affordable Care Act on Colorectal Cancer Incidence and Mortality. | Lee, Catherine; Kushi, Lawrence H; Reed, Mary E; Eldridge, Elizabeth H; Lee, Jeffrey K; Zhang, Jie; Spiegelman, Donna | American journal of preventive medicine | 2022 Mar | 34763959 | |
| Current and future techniques for detecting oxytocin: Focusing on genetically-encoded GPCR sensors. | Lee, Dongmin; Kwon, Hyung-Bae | Journal of neuroscience methods | 2022 01 15 | 34763021 | |
| Unsupervised deep learning identifies semantic disentanglement in single inferotemporal face patch neurons. | Higgins, Irina; Chang, Le; Langston, Victoria; Hassabis, Demis; Summerfield, Christopher; Tsao, Doris; Botvinick, Matthew | Nature communications | 2021 11 09 | 34753913 | |
| Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants. | McCallum, Matthew; Walls, Alexandra C; Sprouse, Kaitlin R; Bowen, John E; Rosen, Laura E; Dang, Ha V; De Marco, Anna; Franko, Nicholas; Tilles, Sasha W; Logue, Jennifer; Miranda, Marcos C; Ahlrichs, Margaret; Carter, Lauren; Snell, Gyorgy; Pizzuto, Matteo | Science (New York, N.Y.) | 2021 12 24 | 34751595 | |
| CHARMING: Harmonizing synonymous codon usage to replicate a desired codon usage pattern. | Wright, Gabriel; Rodriguez, Anabel; Li, Jun; Milenkovic, Tijana; Emrich, Scott J; Clark, Patricia L | Protein science : a publication of the Protein Society | 2021 Nov 04 | 34738275 | |
| Integrator enforces the fidelity of transcriptional termination at protein-coding genes. | Dasilva, Lucas Ferreira; Blumenthal, Ezra; Beckedorff, Felipe; Cingaram, Pradeep Reddy; Gomes Dos Santos, Helena; Edupuganti, Raghu Ram; Zhang, Anda; Dokaneheifard, Sadat; Aoi, Yuki; Yue, Jingyin; Kirstein, Nina; Tayari, Mina Masoumeh; Shilatifard, Ali; Shiekhattar, Ramin | Science advances | 2021 Nov 05 | 34730992 | |
| Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2. | Brogan, Daniel J; Chaverra-Rodriguez, Duverney; Lin, Calvin P; Smidler, Andrea L; Yang, Ting; Alcantara, Lenissa M; Antoshechkin, Igor; Liu, Junru; Raban, Robyn R; Belda-Ferre, Pedro; Knight, Rob; Komives, Elizabeth A; Akbari, Omar S | ACS sensors | 2021 11 26 | 34714054 | |
| Disulfiram use is associated with lower risk of COVID-19: A retrospective cohort study. | Fillmore, Nathanael; Bell, Steven; Shen, Ciyue; Nguyen, Vinh; La, Jennifer; Dubreuil, Maureen; Strymish, Judith; Brophy, Mary; Mehta, Gautam; Wu, Hao; Lieberman, Judy; Do, Nhan; Sander, Chris | PloS one | 2021 | 34710137 | |
| A non-canonical, interferon-independent signaling activity of cGAMP triggers DNA damage response signaling. | Banerjee, Daipayan; Langberg, Kurt; Abbas, Salar; Odermatt, Eric; Yerramothu, Praveen; Volaric, Martin; Reidenbach, Matthew A; Krentz, Kathy J; Rubinstein, C Dustin; Brautigan, David L; Abbas, Tarek; Gelfand, Bradley D; Ambati, Jayakrishna; Kerur, Nagaraj | Nature communications | 2021 10 27 | 34707113 | |
| A working model for condensate RNA-binding proteins as matchmakers for protein complex assembly. | Chen, Xiuzhen; Mayr, Christine | RNA (New York, N.Y.) | 2021 Oct 27 | 34706978 | |
| GCN2 adapts protein synthesis to scavenging-dependent growth. | Nofal, Michel; Wang, Tim; Yang, Lifeng; Jankowski, Connor S R; Hsin-Jung Li, Sophia; Han, Seunghun; Parsons, Lance; Frese, Alexander N; Gitai, Zemer; Anthony, Tracy G; Wühr, Martin; Sabatini, David M; Rabinowitz, Joshua D | Cell systems | 2022 Feb 16 | 34706266 | |
| Repeated hippocampal seizures lead to brain-wide reorganization of circuits and seizure propagation pathways. | Choy, ManKin; Dadgar-Kiani, Ehsan; Cron, Greg O; Duffy, Ben A; Schmid, Florian; Edelman, Bradley J; Asaad, Mazen; Chan, Russell W; Vahdat, Shahabeddin; Lee, Jin Hyung | Neuron | 2022 01 19 | 34706219 | |
| Ribonuclease recruitment using a small molecule reduced c9ALS/FTD r(G4C2) repeat expansion in vitro and in vivo ALS models. | Bush, Jessica A; Aikawa, Haruo; Fuerst, Rita; Li, Yue; Ursu, Andrei; Meyer, Samantha M; Benhamou, Raphael I; Chen, Jonathan L; Khan, Tanya; Wagner-Griffin, Sarah; Van Meter, Montina J; Tong, Yuquan; Olafson, Hailey; McKee, Kendra K; Childs-Disney, Jessica L; Gendron, Tania F; Zhang, Yongjie; Coyne, Alyssa N; Wang, Eric T; Yildirim, Ilyas; Wang, Kye Won; Petrucelli, Leonard; Rothstein, Jeffrey D; Disney, Matthew D | Science translational medicine | 2021 10 27 | 34705518 | |
| Crim1 and Kelch-like 14 exert complementary dual-directional developmental control over segmentally specific corticospinal axon projection targeting. | Sahni, Vibhu; Itoh, Yasuhiro; Shnider, Sara J; Macklis, Jeffrey D | Cell reports | 2021 Oct 19 | 34686337 | |
| Corticospinal neuron subpopulation-specific developmental genes prospectively indicate mature segmentally specific axon projection targeting. | Sahni, Vibhu; Shnider, Sara J; Jabaudon, Denis; Song, Janet H T; Itoh, Yasuhiro; Greig, Luciano C; Macklis, Jeffrey D | Cell reports | 2021 10 19 | 34686320 | |
| Challenges in Determining the Role of Microbiome Evolution in Barrett's Esophagus and Progression to Esophageal Adenocarcinoma. | Guccione, Caitlin; Yadlapati, Rena; Shah, Shailja; Knight, Rob; Curtius, Kit | Microorganisms | 2021 Sep 22 | 34683324 | |
| Phase separation drives RNA virus-induced activation of the NLRP6 inflammasome. | Shen, Chen; Li, Runzhi; Negro, Roberto; Cheng, Jiewei; Vora, Setu M; Fu, Tian-Min; Wang, Anmin; He, Kaixin; Andreeva, Liudmila; Gao, Pu; Tian, Zhigang; Flavell, Richard A; Zhu, Shu; Wu, Hao | Cell | 2021 Nov 11 | 34678144 | |
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| A SARS-CoV-2 variant elicits an antibody response with a shifted immunodominance hierarchy. | Greaney, Allison J; Starr, Tyler N; Eguia, Rachel T; Loes, Andrea N; Khan, Khadija; Karim, Farina; Cele, Sandile; Bowen, John E; Logue, Jennifer K; Corti, Davide; Veesler, David; Chu, Helen Y; Sigal, Alex; Bloom, Jesse D | bioRxiv : the preprint server for biology | 2021 Oct 13 | 34671768 | |
| A class II MHC-targeted vaccine elicits immunity against SARS-CoV-2 and its variants. | Pishesha, Novalia; Harmand, Thibault J; Rothlauf, Paul W; Praest, Patrique; Alexander, Ryan K; van den Doel, Renate; Liebeskind, Mariel J; Vakaki, Maria A; McCaul, Nicholas; Wijne, Charlotte; Verhaar, Elisha; Pinney 3rd, William; Heston, Hailey; Bloyet, L | Proceedings of the National Academy of Sciences of the United States of America | 2021 11 02 | 34654739 | |
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| Mechanoreceptor synapses in the brainstem shape the central representation of touch. | Lehnert, Brendan P; Santiago, Celine; Huey, Erica L; Emanuel, Alan J; Renauld, Sophia; Africawala, Nusrat; Alkislar, Ilayda; Zheng, Yang; Bai, Ling; Koutsioumpa, Charalampia; Hong, Jennifer T; Magee, Alexandra R; Harvey, Christopher D; Ginty, David D | Cell | 2021 Oct 28 | 34637701 | |
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| Wharton's Jelly Mesenchymal Stromal Cells and Derived Extracellular Vesicles as Post-Myocardial Infarction Therapeutic Toolkit: An Experienced View. | Muñoz-Domínguez, Noelia; Roura, Santiago; Prat-Vidal, Cristina; Vives, Joaquim | Pharmaceutics | 2021 Aug 26 | 34575412 | |
| Biology before the SOS Response-DNA Damage Mechanisms at Chromosome Fragile Sites. | Fitzgerald, Devon M; Rosenberg, Susan M | Cells | 2021 09 01 | 34571923 | |
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| Refining surgical techniques for efficient posterior semicircular canal gene delivery in the adult mammalian inner ear with minimal hearing loss. | Zhu, Jianliang; Choi, Jin Woong; Ishibashi, Yasuko; Isgrig, Kevin; Grati, Mhamed; Bennett, Jean; Chien, Wade | Scientific reports | 2021 Sep 22 | 34552193 | |
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| Poly(catecholamine) coated CsPbBr3 perovskite microlasers: lasing in water and biofunctionalization. | Cho, Sangyeon; Yun, Seok Hyun | Advanced functional materials | 2021 Jul 02 | 34539305 | |
| Amorphous Infinite Coordination Polymer Microparticles: A New Class of Selective Hydrogen Storage Materials. | Jeon, You-Moon; Armatas, Gerasimos S; Heo, Jungseok; Kanatzidis, Mercouri G; Mirkin, Chad A | Advanced materials (Deerfield Beach, Fla.) | 2008 Jun 04 | 34539086 | |
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| Vaginal microbiome topic modeling of laboring Ugandan women with and without fever. | Movassagh, Mercedeh; Bebell, Lisa M; Burgoine, Kathy; Hehnly, Christine; Zhang, Lijun; Moran, Kim; Sheldon, Kathryn; Sinnar, Shamim A; Mbabazi-Kabachelor, Edith; Kumbakumba, Elias; Bazira, Joel; Ochora, Moses; Mulondo, Ronnie; Nsubuga, Brian Kaaya; Weeks, Andrew D; Gladstone, Melissa; Olupot-Olupot, Peter; Ngonzi, Joseph; Roberts, Drucilla J; Meier, Frederick A; Irizarry, Rafael A; Broach, James R; Schiff, Steven J; Paulson, Joseph N | NPJ biofilms and microbiomes | 2021 09 10 | 34508087 | |
| Directed evolution of a family of AAV capsid variants enabling potent muscle-directed gene delivery across species. | Tabebordbar, Mohammadsharif; Lagerborg, Kim A; Stanton, Alexandra; King, Emily M; Ye, Simon; Tellez, Liana; Krunnfusz, Allison; Tavakoli, Sahar; Widrick, Jeffrey J; Messemer, Kathleen A; Troiano, Emily C; Moghadaszadeh, Behzad; Peacker, Bryan L; Leacock, Krystynne A; Horwitz, Naftali; Beggs, Alan H; Wagers, Amy J; Sabeti, Pardis C | Cell | 2021 09 16 | 34506722 | |
| Computational modeling of aberrant electrical activity following remuscularization with intramyocardially injected pluripotent stem cell-derived cardiomyocytes. | Yu, Joseph K; Liang, Jialiu A; Weinberg, Seth H; Trayanova, Natalia A | Journal of molecular and cellular cardiology | 2022 01 | 34487753 | |
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| Lectins enhance SARS-CoV-2 infection and influence neutralizing antibodies. | Lempp, Florian A; Soriaga, Leah B; Montiel-Ruiz, Martin; Benigni, Fabio; Noack, Julia; Park, Young-Jun; Bianchi, Siro; Walls, Alexandra C; Bowen, John E; Zhou, Jiayi; Kaiser, Hannah; Joshi, Anshu; Agostini, Maria; Meury, Marcel; Dellota Jr, Exequiel; Jaconi, Stefano; Cameroni, Elisabetta; Martinez-Picado, Javier; Vergara-Alert, Júlia; Izquierdo-Useros, Nuria; Virgin, Herbert W; Lanzavecchia, Antonio; Veesler, David; Purcell, Lisa A; Telenti, Amalio; Corti, Davide | Nature | 2021 10 | 34464958 | |
| The Role of the Dorsal-Lateral Prefrontal Cortex in Reward Sensitivity During Approach-Avoidance Conflict. | Rolle, Camarin E; Pedersen, Mads L; Johnson, Noriah; Amemori, Ken-Ichi; Ironside, Maria; Graybiel, Ann M; Pizzagalli, Diego A; Etkin, Amit | Cerebral cortex (New York, N.Y. : 1991) | 2021 Aug 31 | 34464445 | |
| Compact RNA editors with small Cas13 proteins. | Kannan, Soumya; Altae-Tran, Han; Jin, Xin; Madigan, Victoria J; Oshiro, Rachel; Makarova, Kira S; Koonin, Eugene V; Zhang, Feng | Nature biotechnology | 2022 Feb | 34462587 | |
| Teacher-student neural coupling during teaching and learning. | Nguyen, Mai; Chang, Ashley; Micciche, Emily; Meshulam, Meir; Nastase, Samuel A; Hasson, Uri | Social cognitive and affective neuroscience | 2022 Apr 01 | 34450637 | |
| Reversible Ligand Pairing and Sorting Processes Leading to Heteroligated Palladium(II) Complexes with Hemilabile Ligands. | Ulmann, Pirmin A; Mirkin, Chad A; DiPasquale, Antonio G; Liable-Sands, Louise M; Rheingold, Arnold L | Organometallics | 2009 Feb 23 | 34446977 | |
| Algal p-coumaric acid induces oxidative stress and siderophore biosynthesis in the bacterial symbiont Phaeobacter inhibens. | Wang, Rurun; Gallant, Étienne; Wilson, Maxwell Z; Wu, Yihan; Li, Anran; Gitai, Zemer; Seyedsayamdost, Mohammad R | Cell chemical biology | 2021 Aug 24 | 34437838 | |
| Expression of Foxp3 by T follicular helper cells in end-stage germinal centers. | Jacobsen, Johanne T; Hu, Wei; R Castro, Tiago B; Solem, Sigrid; Galante, Alice; Lin, Zeran; Allon, Samuel J; Mesin, Luka; Bilate, Angelina M; Schiepers, Ariën; Shalek, Alex K; Rudensky, Alexander Y; Victora, Gabriel D | Science (New York, N.Y.) | 2021 07 16 | 34437125 | |
| Enterically derived high-density lipoprotein restrains liver injury through the portal vein. | Han, Yong-Hyun; Onufer, Emily J; Huang, Li-Hao; Sprung, Robert W; Davidson, W Sean; Czepielewski, Rafael S; Wohltmann, Mary; Sorci-Thomas, Mary G; Warner, Brad W; Randolph, Gwendalyn J | Science (New York, N.Y.) | 2021 07 23 | 34437091 | |
| Hypothalamic dopamine neurons motivate mating through persistent cAMP signalling. | Zhang, Stephen X; Lutas, Andrew; Yang, Shang; Diaz, Adriana; Fluhr, Hugo; Nagel, Georg; Gao, Shiqiang; Andermann, Mark L | Nature | 2021 09 | 34433964 | |
| Submicrometer perovskite plasmonic lasers at room temperature. | Cho, Sangyeon; Yang, Yi; Soljačić, Marin; Yun, Seok Hyun | Science advances | 2021 Aug | 34433555 | |
| The landscape of alternative polyadenylation in single cells of the developing mouse embryo. | Agarwal, Vikram; Lopez-Darwin, Sereno; Kelley, David R; Shendure, Jay | Nature communications | 2021 08 24 | 34429411 | |
| Metabolic plasticity drives development during mammalian embryogenesis. | Sharpley, Mark S; Chi, Fangtao; Hoeve, Johanna Ten; Banerjee, Utpal | Developmental cell | 2021 08 23 | 34428399 | |
| Tackling COVID-19 with neutralizing monoclonal antibodies. | Corti, Davide; Purcell, Lisa A; Snell, Gyorgy; Veesler, David | Cell | 2021 Aug 19 | 34416148 | |
| Mammalian retrovirus-like protein PEG10 packages its own mRNA and can be pseudotyped for mRNA delivery. | Segel, Michael; Lash, Blake; Song, Jingwei; Ladha, Alim; Liu, Catherine C; Jin, Xin; Mekhedov, Sergei L; Macrae, Rhiannon K; Koonin, Eugene V; Zhang, Feng | Science (New York, N.Y.) | 2021 08 20 | 34413232 | |
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| Characterization of Global Gene Expression, Regulation of Metal Ions, and Infection Outcomes in Immune-Competent 129S6 Mouse Macrophages. | Janiszewski, Lara N; Minson, Michael; Allen, Mary A; Dowell, Robin D; Palmer, Amy E | Infection and immunity | 2021 10 15 | 34370511 | |
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| Conformal Coating of Freestanding Particles by Vapor-Phase Infiltration. | Liapis, Andreas C; Subramanian, Ashwanth; Cho, Sangyeon; Kisslinger, Kim; Nam, Chang-Yong; Yun, Seok-Hyun | Advanced materials interfaces | 2020 Dec 17 | 33708471 | |
| Polymerase-guided base editing enables in vivo mutagenesis and rapid protein engineering. | Cravens, Aaron; Jamil, Osman K; Kong, Deze; Sockolosky, Jonathan T; Smolke, Christina D | Nature communications | 2021 03 11 | 33707425 | |
| Effects of nicotine on DARPP-32 and CaMKII signaling relevant to addiction. | Lee, Angela M; Picciotto, Marina R | Advances in pharmacology (San Diego, Calif.) | 2021 | 33706940 | |
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| The neural circuitry of social homeostasis: Consequences of acute versus chronic social isolation. | Lee, Christopher R; Chen, Alon; Tye, Kay M | Cell | 2021 Mar 18 | 33691140 | |
| Integrin β1 coordinates survival and morphogenesis of the embryonic lineage upon implantation and pluripotency transition. | Molè, Matteo Amitaba; Weberling, Antonia; Fässler, Reinhard; Campbell, Alison; Fishel, Simon; Zernicka-Goetz, Magdalena | Cell reports | 2021 Mar 09 | 33691117 | |
| A synthetic small molecule stalls pre-mRNA splicing by promoting an early-stage U2AF2-RNA complex. | Chatrikhi, Rakesh; Feeney, Callen F; Pulvino, Mary J; Alachouzos, Georgios; MacRae, Andrew J; Falls, Zackary; Rai, Sumit; Brennessel, William W; Jenkins, Jermaine L; Walter, Matthew J; Graubert, Timothy A; Samudrala, Ram; Jurica, Melissa S; Frontier, Alison J; Kielkopf, Clara L | Cell chemical biology | 2021 Aug 19 | 33689684 | |
| Microglia in Cancer Therapy-Related Cognitive Impairment. | Gibson, Erin M; Monje, Michelle | Trends in neurosciences | 2021 06 | 33674135 | |
| Global, regional and national epidemiology and prevalence of child stunting, wasting and underweight in low- and middle-income countries, 2006-2018. | Ssentongo, Paddy; Ssentongo, Anna E; Ba, Djibril M; Ericson, Jessica E; Na, Muzi; Gao, Xiang; Fronterre, Claudio; Chinchilli, Vernon M; Schiff, Steven J | Scientific reports | 2021 Mar 04 | 33664313 | |
| The Principles of Antibody Therapy for Infectious Diseases with Relevance for COVID-19. | Casadevall, Arturo; Pirofski, Liise-Anne; Joyner, Michael J | mBio | 2021 03 02 | 33653885 | |
| In vivo reconstitution finds multivalent RNA-RNA interactions as drivers of mesh-like condensates. | Ma, Weirui; Zheng, Gang; Xie, Wei; Mayr, Christine | eLife | 2021 Mar 02 | 33650968 | |
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| Structural and developmental principles of neuropil assembly in C. elegans. | Moyle, Mark W; Barnes, Kristopher M; Kuchroo, Manik; Gonopolskiy, Alex; Duncan, Leighton H; Sengupta, Titas; Shao, Lin; Guo, Min; Santella, Anthony; Christensen, Ryan; Kumar, Abhishek; Wu, Yicong; Moon, Kevin R; Wolf, Guy; Krishnaswamy, Smita; Bao, Zhirong; Shroff, Hari; Mohler, William A; Colón-Ramos, Daniel A | Nature | 2021 03 | 33627875 | |
| Preconceptual Priming Overrides Susceptibility to Escherichia coli Systemic Infection during Pregnancy. | Prasanphanich, Nina Salinger; Gregory, Emily J; Erickson, John J; Miller-Handley, Hilary; Kinder, Jeremy M; Way, Sing Sing | mBio | 2021 02 23 | 33622714 | |
| Deficient spermiogenesis in mice lacking Rlim. | Wang, Feng; Gervasi, Maria Gracia; Bošković, Ana; Sun, Fengyun; Rinaldi, Vera D; Yu, Jun; Wallingford, Mary C; Tourzani, Darya A; Mager, Jesse; Zhu, Lihua Julie; Rando, Oliver J; Visconti, Pablo E; Strittmatter, Lara; Bach, Ingolf | eLife | 2021 Feb 23 | 33620316 | |
| The STI1-domain is a flexible alpha-helical fold with a hydrophobic groove. | Fry, Michelle Y; Saladi, Shyam M; Clemons Jr, William M | Protein science : a publication of the Protein Society | 2021 Apr | 33620121 | |
| SARS-CoV-2 B.1.1.7 sensitivity to mRNA vaccine-elicited, convalescent and monoclonal antibodies. | Collier, Dami A; De Marco, Anna; Ferreira, Isabella A T M; Meng, Bo; Datir, Rawlings; Walls, Alexandra C; Kemp S, Steven A; Bassi, Jessica; Pinto, Dora; Fregni, Chiara Silacci; Bianchi, Siro; Tortorici, M Alejandra; Bowen, John; Culap, Katja; Jaconi, Stef | medRxiv : the preprint server for health sciences | 2021 Feb 15 | 33619509 | |
| Massive expansion and cryopreservation of functional human induced pluripotent stem cell-derived cardiomyocytes. | Maas, Renee G C; Lee, Soah; Harakalova, Magdalena; Snijders Blok, Christian J B; Goodyer, William R; Hjortnaes, Jesper; Doevendans, Pieter A F M; Van Laake, Linda W; van der Velden, Jolanda; Asselbergs, Folkert W; Wu, Joseph C; Sluijter, Joost P G; Wu, Se | STAR protocols | 2021 Mar 19 | 33615277 | |
| Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2. | Lin, Ku-Feng; Fry, Michelle Y; Saladi, Shyam M; Clemons Jr, William M | The Journal of biological chemistry | 2021 Feb 18 | 33610544 | |
| Genome-wide mapping of Piwi association with specific loci in Drosophila ovaries. | Liu, Na; Neuenkirchen, Nils; Zhong, Mei; Lin, Haifan | G3 (Bethesda, Md.) | 2021 Feb 09 | 33609367 | |
| Music-selective neural populations arise without musical training. | Boebinger, Dana; Norman-Haignere, Sam V; McDermott, Josh H; Kanwisher, Nancy | Journal of neurophysiology | 2021 06 01 | 33596723 | |
| Rare deleterious germline variants and risk of lung cancer. | Liu, Yanhong; Xia, Jun; McKay, James; Tsavachidis, Spiridon; Xiao, Xiangjun; Spitz, Margaret R; Cheng, Chao; Byun, Jinyoung; Hong, Wei; Li, Yafang; Zhu, Dakai; Song, Zhuoyi; Rosenberg, Susan M; Scheurer, Michael E; Kheradmand, Farrah; Pikielny, Claudio W; Lusk, Christine M; Schwartz, Ann G; Wistuba, Ignacio I; Cho, Michael H; Silverman, Edwin K; Bailey-Wilson, Joan; Pinney, Susan M; Anderson, Marshall; Kupert, Elena; Gaba, Colette; Mandal, Diptasri; You, Ming; de Andrade, Mariza; Yang, Ping; Liloglou, Triantafillos; Davies, Michael P A; Lissowska, Jolanta; Swiatkowska, Beata; Zaridze, David; Mukeria, Anush; Janout, Vladimir; Holcatova, Ivana; Mates, Dana; Stojsic, Jelena; Scelo, Ghislaine; Brennan, Paul; Liu, Geoffrey; Field, John K; Hung, Rayjean J; Christiani, David C; Amos, Christopher I | NPJ precision oncology | 2021 Feb 16 | 33594163 | |
| microRNA-33 maintains adaptive thermogenesis via enhanced sympathetic nerve activity. | Horie, Takahiro; Nakao, Tetsushi; Miyasaka, Yui; Nishino, Tomohiro; Matsumura, Shigenobu; Nakazeki, Fumiko; Ide, Yuya; Kimura, Masahiro; Tsuji, Shuhei; Rodriguez, Randolph Ruiz; Watanabe, Toshimitsu; Yamasaki, Tomohiro; Xu, Sijia; Otani, Chiharu; Miyagawa | Nature communications | 2021 02 16 | 33594062 | |
| Competitive binding of independent extension and retraction motors explains the quantitative dynamics of type IV pili. | Koch, Matthias D; Fei, Chenyi; Wingreen, Ned S; Shaevitz, Joshua W; Gitai, Zemer | Proceedings of the National Academy of Sciences of the United States of America | 2021 Feb 23 | 33593905 | |
| High-throughput behavioral screen in C. elegans reveals Parkinson's disease drug candidates. | Sohrabi, Salman; Mor, Danielle E; Kaletsky, Rachel; Keyes, William; Murphy, Coleen T | Communications biology | 2021 Feb 15 | 33589689 | |
| In situ mapping identifies distinct vascular niches for myelopoiesis. | Zhang, Jizhou; Wu, Qingqing; Johnson, Courtney B; Pham, Giang; Kinder, Jeremy M; Olsson, Andre; Slaughter, Anastasiya; May, Margot; Weinhaus, Benjamin; D'Alessandro, Angelo; Engel, James Douglas; Jiang, Jean X; Kofron, J Matthew; Huang, L Frank; Prasath, V B Surya; Way, Sing Sing; Salomonis, Nathan; Grimes, H Leighton; Lucas, Daniel | Nature | 2021 02 | 33568812 | |
| Diffuse Glioma Heterogeneity and Its Therapeutic Implications. | Nicholson, James G; Fine, Howard A | Cancer discovery | 2021 Mar | 575-590 | 33558264 |
| The distinct roles of calcium in rapid control of neuronal glycolysis and the tricarboxylic acid cycle. | Díaz-García, Carlos Manlio; Meyer, Dylan J; Nathwani, Nidhi; Rahman, Mahia; Martínez-François, Juan Ramón; Yellen, Gary | eLife | 2021 Feb 08 | 33555254 | |
| The evolution of red color vision is linked to coordinated rhodopsin tuning in lycaenid butterflies. | Liénard, Marjorie A; Bernard, Gary D; Allen, Andrew; Lassance, Jean-Marc; Song, Siliang; Childers, Richard Rabideau; Yu, Nanfang; Ye, Dajia; Stephenson, Adriana; Valencia-Montoya, Wendy A; Salzman, Shayla; Whitaker, Melissa R L; Calonje, Michael; Zhang, Feng; Pierce, Naomi E | Proceedings of the National Academy of Sciences of the United States of America | 2021 Feb 09 | 33547236 | |
| CRISPR/Cas9-based targeting of fluorescent reporters to human iPSCs to isolate atrial and ventricular-specific cardiomyocytes. | Chirikian, Orlando; Goodyer, William R; Dzilic, Elda; Serpooshan, Vahid; Buikema, Jan W; McKeithan, Wesley; Wu, HaoDi; Li, Guang; Lee, Soah; Merk, Markus; Galdos, Francisco; Beck, Aimee; Ribeiro, Alexandre J S; Paige, Sharon; Mercola, Mark; Wu, Joseph C; Pruitt, Beth L; Wu, Sean M | Scientific reports | 2021 Feb 04 | 33542270 | |
| Pluripotent stem cell-derived epithelium misidentified as brain microvascular endothelium requires ETS factors to acquire vascular fate. | Lu, Tyler M; Houghton, Sean; Magdeldin, Tarig; Durán, José Gabriel Barcia; Minotti, Andrew P; Snead, Amanda; Sproul, Andrew; Nguyen, Duc-Huy T; Xiang, Jenny; Fine, Howard A; Rosenwaks, Zev; Studer, Lorenz; Rafii, Shahin; Agalliu, Dritan; Redmond, David; L | Proceedings of the National Academy of Sciences of the United States of America | 2021 Feb 23 | 33542154 | |
| In vivo NIR-II structured-illumination light-sheet microscopy. | Wang, Feifei; Ma, Zhuoran; Zhong, Yeteng; Salazar, Felix; Xu, Chun; Ren, Fuqiang; Qu, Liangqiong; Wu, Anna M; Dai, Hongjie | Proceedings of the National Academy of Sciences of the United States of America | 2021 Feb 09 | 33526701 | |
| Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration. | Fukuda, Shinichi; Varshney, Akhil; Fowler, Benjamin J; Wang, Shao-Bin; Narendran, Siddharth; Ambati, Kameshwari; Yasuma, Tetsuhiro; Magagnoli, Joseph; Leung, Hannah; Hirahara, Shuichiro; Nagasaka, Yosuke; Yasuma, Reo; Apicella, Ivana; Pereira, Felipe; Makin, Ryan D; Magner, Eamonn; Liu, Xinan; Sun, Jian; Wang, Mo; Baker, Kirstie; Marion, Kenneth M; Huang, Xiwen; Baghdasaryan, Elmira; Ambati, Meenakshi; Ambati, Vidya L; Pandey, Akshat; Pandya, Lekha; Cummings, Tammy; Banerjee, Daipayan; Huang, Peirong; Yerramothu, Praveen; Tolstonog, Genrich V; Held, Ulrike; Erwin, Jennifer A; Paquola, Apua C M; Herdy, Joseph R; Ogura, Yuichiro; Terasaki, Hiroko; Oshika, Tetsuro; Darwish, Shaban; Singh, Ramendra K; Mozaffari, Saghar; Bhattarai, Deepak; Kim, Kyung Bo; Hardin, James W; Bennett, Charles L; Hinton, David R; Hanson, Timothy E; Röver, Christian; Parang, Keykavous; Kerur, Nagaraj; Liu, Jinze; Werner, Brian C; Sutton, S Scott; Sadda, Srinivas R; Schumann, Gerald G; Gelfand, Bradley D; Gage, Fred H; Ambati, Jayakrishna | Proceedings of the National Academy of Sciences of the United States of America | 2021 Feb 09 | 33526699 | |
| Convalescent plasma for COVID-19 - encouraging signals of efficacy. | Casadevall, Arturo; Tobian, Aaron A R | British journal of haematology | 2021 02 | 33524158 | |
| Real-time observation and control of optical chaos. | Fan, Linran; Yan, Xiaodong; Wang, Han; Wang, Lihong V | Science advances | 2021 Jan | 33523874 | |
| Laboratory Action Plan for Emerging SARS-CoV-2 Variants. | Filkins, Laura; SoRelle, Jeffrey A; Schoggins, John; Park, Jason Y | Clinical chemistry | 2021 04 29 | 33515256 | |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | Shaffer, Justin P; Marotz, Clarisse; Belda-Ferre, Pedro; Martino, Cameron; Wandro, Stephen; Estaki, Mehrbod; Salido, Rodolfo A; Carpenter, Carolina S; Zaramela, Livia S; Minich, Jeremiah J; Bryant, MacKenzie; Sanders, Karenina; Fraraccio, Serena; Ackerman | BioTechniques | 2021 03 | 33512248 | |
| Functional characterization of the dural sinuses as a neuroimmune interface. | Rustenhoven, Justin; Drieu, Antoine; Mamuladze, Tornike; de Lima, Kalil Alves; Dykstra, Taitea; Wall, Morgan; Papadopoulos, Zachary; Kanamori, Mitsuhiro; Salvador, Andrea Francesca; Baker, Wendy; Lemieux, Mackenzie; Da Mesquita, Sandro; Cugurra, Andrea; Fitzpatrick, James; Sviben, Sanja; Kossina, Ross; Bayguinov, Peter; Townsend, Reid R; Zhang, Qiang; Erdmann-Gilmore, Petra; Smirnov, Igor; Lopes, Maria-Beatriz; Herz, Jasmin; Kipnis, Jonathan | Cell | 2021 02 18 | 33508229 | |
| Laser particles with omnidirectional emission for cell tracking. | Tang, Shui-Jing; Dannenberg, Paul H; Liapis, Andreas C; Martino, Nicola; Zhuo, Yue; Xiao, Yun-Feng; Yun, Seok-Hyun | Light, science & applications | 2021 Jan 25 | 33495436 | |
| Time-evolving controllability of effective connectivity networks during seizure progression. | Scheid, Brittany H; Ashourvan, Arian; Stiso, Jennifer; Davis, Kathryn A; Mikhail, Fadi; Pasqualetti, Fabio; Litt, Brian; Bassett, Danielle S | Proceedings of the National Academy of Sciences of the United States of America | 2021 02 02 | 33495341 | |
| The default mode network: where the idiosyncratic self meets the shared social world. | Yeshurun, Yaara; Nguyen, Mai; Hasson, Uri | Nature reviews. Neuroscience | 2021 Mar | 33483717 | |
| Decoding and perturbing decision states in real time. | Peixoto, Diogo; Verhein, Jessica R; Kiani, Roozbeh; Kao, Jonathan C; Nuyujukian, Paul; Chandrasekaran, Chandramouli; Brown, Julian; Fong, Sania; Ryu, Stephen I; Shenoy, Krishna V; Newsome, William T | Nature | 2021 03 | 33473215 | |
| Restoring metabolism of myeloid cells reverses cognitive decline in ageing. | Minhas, Paras S; Latif-Hernandez, Amira; McReynolds, Melanie R; Durairaj, Aarooran S; Wang, Qian; Rubin, Amanda; Joshi, Amit U; He, Joy Q; Gauba, Esha; Liu, Ling; Wang, Congcong; Linde, Miles; Sugiura, Yuki; Moon, Peter K; Majeti, Ravi; Suematsu, Makoto; | Nature | 2021 02 | 33473210 | |
| Trophectoderm mechanics direct epiblast shape upon embryo implantation. | Weberling, Antonia; Zernicka-Goetz, Magdalena | Cell reports | 2021 Jan 19 | 33472064 | |
| The Source of Glycolytic Intermediates in Mammalian Tissues. | TeSlaa, Tara; Bartman, Caroline R; Jankowski, Connor S R; Zhang, Zhaoyue; Xu, Xincheng; Xing, Xi; Wang, Lin; Lu, Wenyun; Hui, Sheng; Rabinowitz, Joshua D | Cell metabolism | 2021 Feb 02 | 33472024 | |
| Radiolabeling of Gold Nanocages for Potential Applications in Tracking, Diagnosis, and Image-Guided Therapy. | Qiu, Jichuan; Liu, Yongjian; Xia, Younan | Advanced healthcare materials | 2021 08 | 33470560 | |
| A High-Dimensional Window into the Micro-Environment of Triple Negative Breast Cancer. | Nederlof, Iris; Horlings, Hugo M; Curtis, Christina; Kok, Marleen | Cancers | 2021 Jan 16 | 33467084 | |
| Integration of Multitargeted Polymer-Based Contrast Agents with Photoacoustic Computed Tomography: An Imaging Technique to Visualize Breast Cancer Intratumor Heterogeneity. | Li, Lei; Patil, Deepanjali; Petruncio, Greg; Harnden, Kathleen K; Somasekharan, Jisha V; Paige, Mikell; Wang, Lihong V; Salvador-Morales, Carolina | ACS nano | 2021 02 23 | 33464827 | |
| The Card1 nuclease provides defence during type III CRISPR immunity. | Rostøl, Jakob T; Xie, Wei; Kuryavyi, Vitaly; Maguin, Pascal; Kao, Kevin; Froom, Ruby; Patel, Dinshaw J; Marraffini, Luciano A | Nature | 2021 02 | 33461211 | |
| Pseudomonas aeruginosa detachment from surfaces via a self-made small molecule. | Scheffler, Robert J; Sugimoto, Yuki; Bratton, Benjamin P; Ellison, Courtney K; Koch, Matthias D; Donia, Mohamed S; Gitai, Zemer | The Journal of biological chemistry | 2021 Jan 12 | 33450229 | |
| Sleep Analysis in Adult C. elegans Reveals State-Dependent Alteration of Neural and Behavioral Responses. | Lawler, Daniel E; Chew, Yee Lian; Hawk, Josh D; Aljobeh, Ahmad; Schafer, William R; Albrecht, Dirk R | The Journal of neuroscience : the official journal of the Society for Neuroscience | 2021 Mar 03 | 33446520 | |
| Control of mesenchymal cell fate via application of FGF-8b in vitro. | Otsuka, Takayoshi; Mengsteab, Paulos Y; Laurencin, Cato T | Stem cell research | 2021 Mar | 33445073 | |
| High-speed atomic force microscopy tracks the dynamic parts of the ribosome. | Scheuring, Simon | Proceedings of the National Academy of Sciences of the United States of America | 2021 01 26 | 33431655 | |
| Biomimetic electroconductive nanofibrous matrices for skeletal muscle regenerative engineering. | Tang, Xiaoyan; Saveh-Shemshaki, Nikoo; Kan, Ho-Man; Khan, Yusuf; Laurencin, Cato T | Regenerative engineering and translational medicine | 2020 Jun | 33426269 | |
| Mechanism of filament formation in UPA-promoted CARD8 and NLRP1 inflammasomes. | Robert Hollingsworth, L; David, Liron; Li, Yang; Griswold, Andrew R; Ruan, Jianbin; Sharif, Humayun; Fontana, Pietro; Orth-He, Elizabeth L; Fu, Tian-Min; Bachovchin, Daniel A; Wu, Hao | Nature communications | 2021 01 08 | 33420033 | |
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| A Versatile eIF3d in Translational Control of Stress Adaptation. | Jia, Longfei; Qian, Shu-Bing | Molecular cell | 2021 01 07 | 33417853 | |
| Structural basis for broad coronavirus neutralization. | Sauer, Maximilian M; Tortorici, M Alexandra; Park, Young-Jun; Walls, Alexandra C; Homad, Leah; Acton, Oliver; Bowen, John; Wang, Chunyan; Xiong, Xiaoli; de van der Schueren, Willem; Quispe, Joel; Hoffstrom, Benjamin G; Bosch, Berend-Jan; McGuire, Andrew T; Veesler, David | bioRxiv : the preprint server for biology | 2020 Dec 29 | 33398277 | |
| In situ genome sequencing resolves DNA sequence and structure in intact biological samples. | Payne, Andrew C; Chiang, Zachary D; Reginato, Paul L; Mangiameli, Sarah M; Murray, Evan M; Yao, Chun-Chen; Markoulaki, Styliani; Earl, Andrew S; Labade, Ajay S; Jaenisch, Rudolf; Church, George M; Boyden, Edward S; Buenrostro, Jason D; Chen, Fei | Science (New York, N.Y.) | 2021 02 26 | 33384301 | |
| Inducible Stem-Cell-Derived Embryos Capture Mouse Morphogenetic Events In Vitro. | Amadei, Gianluca; Lau, Kasey Y C; De Jonghe, Joachim; Gantner, Carlos W; Sozen, Berna; Chan, Christopher; Zhu, Meng; Kyprianou, Christos; Hollfelder, Florian; Zernicka-Goetz, Magdalena | Developmental cell | 2021 Feb 08 | 33378662 | |
| Single-Cell Analysis of Blood-Brain Barrier Response to Pericyte Loss. | Mäe, Maarja A; He, Liqun; Nordling, Sofia; Vazquez-Liebanas, Elisa; Nahar, Khayrun; Jung, Bongnam; Li, Xidan; Tan, Bryan C; Chin Foo, Juat; Cazenave-Gassiot, Amaury; Wenk, Markus R; Zarb, Yvette; Lavina, Barbara; Quaggin, Susan E; Jeansson, Marie; Gu, Chengua; Silver, David L; Vanlandewijck, Michael; Butcher, Eugene C; Keller, Annika; Betsholtz, Christer | Circulation research | 2021 02 19 | 33375813 | |
| Structural analysis of RIG-I-like receptors reveals ancient rules of engagement between diverse RNA helicases and TRIM ubiquitin ligases. | Kato, Kazuki; Ahmad, Sadeem; Zhu, Zixiang; Young, Janet M; Mu, Xin; Park, Sehoon; Malik, Harmit S; Hur, Sun | Molecular cell | 2021 02 04 | 33373584 | |
| Deep learning for in vivo near-infrared imaging. | Ma, Zhuoran; Wang, Feifei; Wang, Weizhi; Zhong, Yeteng; Dai, Hongjie | Proceedings of the National Academy of Sciences of the United States of America | 2021 Jan 05 | 33372162 | |
| Bioinspired Scaffold Designs for Regenerating Musculoskeletal Tissue Interfaces. | Barajaa, Mohammed A; Nair, Lakshmi S; Laurencin, Cato T | Regenerative engineering and translational medicine | 2020 Dec | 33344758 | |
| Regenerative Cell-Based Therapies: Cutting Edge, Bleeding Edge, and Off the Edge. | Laurencin, Cato T; McClinton, Aneesah | Regenerative engineering and translational medicine | 2020 Mar | 33344756 | |
| The Integrator complex at the crossroad of coding and noncoding RNA. | Kirstein, Nina; Gomes Dos Santos, Helena; Blumenthal, Ezra; Shiekhattar, Ramin | Current opinion in cell biology | 2021 Jun | 33340967 | |
| Fabrication and characterization of mechanically competent 3D printed polycaprolactone-reduced graphene oxide scaffolds. | Seyedsalehi, Amir; Daneshmandi, Leila; Barajaa, Mohammed; Riordan, John; Laurencin, Cato T | Scientific reports. | 2020 Dec 17; | 33335152 | |
| Modeling human embryo development with embryonic and extra-embryonic stem cells. | Weatherbee, Bailey A T; Cui, Tongtong; Zernicka-Goetz, Magdalena | Developmental biology | 2021 Jun | 33333069 | |
| The dynamics of morphogenesis in stem cell-based embryology: Novel insights for symmetry breaking. | Sozen, Berna; Cornwall-Scoones, Jake; Zernicka-Goetz, Magdalena | Developmental biology | 2021 Jun | 33333067 | |
| Cyclin D3 drives inertial cell cycling in dark zone germinal center B cells. | Pae, Juhee; Ersching, Jonatan; Castro, Tiago B R; Schips, Marta; Mesin, Luka; Allon, Samuel J; Ordovas-Montanes, Jose; Mlynarczyk, Coraline; Melnick, Ari; Efeyan, Alejo; Shalek, Alex K; Meyer-Hermann, Michael; Victora, Gabriel D | The Journal of experimental medicine | 2021 Apr 05 | 33332554 | |
| CXCR4-Binding Positron Emission Tomography Tracers Link Monocyte Recruitment and Endothelial Injury in Murine Atherosclerosis. | Baba, Osamu; Huang, Li-Hao; Elvington, Andrew; Szpakowska, Martyna; Sultan, Deborah; Heo, Gyu Seong; Zhang, Xiaohui; Luehmann, Hannah; Detering, Lisa; Chevigne, Andy; Liu, Yongjian; Randolph, Gwendalyn J | Arteriosclerosis, thrombosis, and vascular biology | 2021 Feb | 33327748 | |
| Clinical outcomes and inflammatory marker levels in patients with Covid-19 and obesity at an inner-city safety net hospital. | Mostaghim, Anahita; Sinha, Pranay; Bielick, Catherine; Knudsen, Selby; Beeram, Indeevar; White, Laura F; Apovian, Caroline; Sagar, Manish; Hochberg, Natasha S | PloS one | 2020 | 33326480 | |
| Optogenetic control of gut bacterial metabolism to promote longevity. | Hartsough, Lucas A; Park, Mooncheol; Kotlajich, Matthew V; Lazar, John Tyler; Han, Bing; Lin, Chih-Chun J; Musteata, Elena; Gambill, Lauren; Wang, Meng C; Tabor, Jeffrey J | eLife | 2020 12 16 | 33325823 | |
| How are qualitative methods used in implementation science research? A scoping review protocol. | Hagaman, Ashley; Rhodes, Elizabeth C; Nyhan, Kate; Katague, Marina; Schwartz, Anna; Spiegelman, Donna | JBI evidence synthesis | 2020 12 14 | 33323772 | |
| Principles of Self-Organization of the Mammalian Embryo. | Zhu, Meng; Zernicka-Goetz, Magdalena | Cell | 2020 12 10 | 33306953 | |
| Systematic Comparison of Vesicular Targeting Signals Leads to the Development of Genetically Encoded Vesicular Fluorescent Zn2+ and pH Sensors. | Pratt, Evan P S; Anson, Kelsie J; Tapper, Justin K; Simpson, David M; Palmer, Amy E | ACS sensors | 2020 12 24 | 33305939 | |
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| The bright and the dark side of myelin plasticity: Neuron-glial interactions in health and disease. | Monje, Michelle; Káradóttir, Ragnhildur Thóra | Seminars in cell & developmental biology | 2020 Dec 05 | 33293232 | |
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| Acute Focal Seizures Start As Local Synchronizations of Neuronal Ensembles. | Wenzel, Michael; Hamm, Jordan P; Peterka, Darcy S; Yuste, Rafael | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 2019 Oct 23; | 31427393 | |
| POLYMERIC BIOMATERIALS FOR SCAFFOLD-BASED BONE REGENERATIVE ENGINEERING. | Ogueri, Kenneth S; Jafari, Tahereh; Escobar Ivirico, Jorge L; Laurencin, Cato T | Regenerative engineering and translational medicine. | 2019 Jun; | 31423461 | |
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| Neuropeptide F regulates courtship in Drosophila through a male-specific neuronal circuit. | Liu, Weiwei; Ganguly, Anindya; Huang, Jia; Wang, Yijin; Ni, Jinfei D; Gurav, Adishthi S; Aguilar, Morris A; Montell, Craig | eLife. | 2019 Aug 12; | 31403399 | |
| Nicotinamide adenine dinucleotides and their precursor NMN have no direct effect on microtubule dynamics in purified brain tubulin. | Luchniak, Anna; Mahamdeh, Mohammed; Howard, Jonathon | PloS one. | 2019; | 31393939 | |
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| Variability in nicotine conditioned place preference and stress-induced reinstatement in mice: Effects of sex, initial chamber preference, and guanfacine. | Lee, Angela M; Calarco, Cali A; McKee, Sherry A; Mineur, Yann S; Picciotto, Marina R | Genes, brain, and behavior. | 2020 Mar; | 31364813 | |
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| Nanoenabled Direct Contact Interfacing of Syringe-Injectable Mesh Electronics. | Lee, Jung Min; Hong, Guosong; Lin, Dingchang; Schuhmann Jr, Thomas G; Sullivan, Andrew T; Viveros, Robert D; Park, Hong-Gyu; Lieber, Charles M | Nano letters. | 2019 Aug 14; | 31361503 | |
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| Zebrafish oxytocin neurons drive nocifensive behavior via brainstem premotor targets. | Wee, Caroline L; Nikitchenko, Maxim; Wang, Wei-Chun; Luks-Morgan, Sasha J; Song, Erin; Gagnon, James A; Randlett, Owen; Bianco, Isaac H; Lacoste, Alix M B; Glushenkova, Elena; Barrios, Joshua P; Schier, Alexander F; Kunes, Samuel; Engert, Florian; Douglass, Adam D | Nature neuroscience. | 2019 09; | 31358991 | |
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| B Cell-Mediated Antigen Presentation through MHC Class II Is Dispensable for Atherosclerosis Progression. | Williams, Jesse W; Elvington, Andrew; Kessler, Skyler; Wohltmann, Mary; Wu, Gregory F; Randolph, Gwendalyn J | ImmunoHorizons. | 2019 01 21; | 31356175 | |
| Methyl-Sensing Nuclear Receptor Liver Receptor Homolog-1 Regulates Mitochondrial Function in Mouse Hepatocytes. | Choi, Sungwoo; Dong, Bingning; Lin, Chih-Chun Janet; Heo, Mi Jeong; Kim, Kang Ho; Sun, Zhen; Wagner, Martin; Putluri, Nagireddy; Suh, Jae Myoung; Wang, Meng C; Moore, David D | Hepatology (Baltimore, Md.). | 2019 Jul 29; | 31355949 | |
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| Bioprinting Approaches to Engineering Vascularized 3D Cardiac Tissues. | Puluca, Nazan; Lee, Soah; Doppler, Stefanie; Münsterer, Andrea; Dreßen, Martina; Krane, Markus; Wu, Sean M | Current cardiology reports. | 2019 07 27; | 31352612 | |
| Astrocyte-Neuron Interactions in the Striatum: Insights on Identity, Form, and Function. | Khakh, Baljit S | Trends in neurosciences. | 2019 Sep; | 31351745 | |
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| Resolving medulloblastoma cellular architecture by single-cell genomics. | Hovestadt, Volker; Smith, Kyle S; Bihannic, Laure; Filbin, Mariella G; Shaw, McKenzie L; Baumgartner, Alicia; DeWitt, John C; Groves, Andrew; Mayr, Lisa; Weisman, Hannah R; Richman, Alyssa R; Shore, Marni E; Goumnerova, Liliana; Rosencrance, Celeste; Carter, Robert A; Phoenix, Timothy N; Hadley, Jennifer L; Tong, Yiai; Houston, Jim; Ashmun, Richard A; DeCuypere, Michael; Sharma, Tanvi; Flasch, Diane; Silkov, Antonina; Ligon, Keith L; Pomeroy, Scott L; Rivera, Miguel N; Rozenblatt-Rosen, Orit; Rusert, Jessica M; Wechsler-Reya, Robert J; Li, Xiao-Nan; Peyrl, Andreas; Gojo, Johannes; Kirchhofer, Dominik; Lötsch, Daniela; Czech, Thomas; Dorfer, Christian; Haberler, Christine; Geyeregger, Rene; Halfmann, Angela; Gawad, Charles; Easton, John; Pfister, Stefan M; Regev, Aviv; Gajjar, Amar; Orr, Brent A; Slavc, Irene; Robinson, Giles W; Bernstein, Bradley E; Suvà, Mario L; Northcott, Paul A | Nature. | 2019 Aug; | 31341285 | |
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| An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma. | Neftel, Cyril; Laffy, Julie; Filbin, Mariella G; Hara, Toshiro; Shore, Marni E; Rahme, Gilbert J; Richman, Alyssa R; Silverbush, Dana; Shaw, McKenzie L; Hebert, Christine M; Dewitt, John; Gritsch, Simon; Perez, Elizabeth M; Gonzalez Castro, L Nicolas; Lan, Xiaoyang; Druck, Nicholas; Rodman, Christopher; Dionne, Danielle; Kaplan, Alexander; Bertalan, Mia S; Small, Julia; Pelton, Kristine; Becker, Sarah; Bonal, Dennis; Nguyen, Quang-De; Servis, Rachel L; Fung, Jeremy M; Mylvaganam, Ravindra; Mayr, Lisa; Gojo, Johannes; Haberler, Christine; Geyeregger, Rene; Czech, Thomas; Slavc, Irene; Nahed, Brian V; Curry, William T; Carter, Bob S; Wakimoto, Hiroaki; Brastianos, Priscilla K; Batchelor, Tracy T; Stemmer-Rachamimov, Anat; Martinez-Lage, Maria; Frosch, Matthew P; Stamenkovic, Ivan; Riggi, Nicolo; Rheinbay, Esther; Monje, Michelle; Rozenblatt-Rosen, Orit; Cahill, Daniel P; Patel, Anoop P; Hunter, Tony; Verma, Inder M; Ligon, Keith L; Louis, David N; Regev, Aviv; Bernstein, Bradley E; Tirosh, Itay; Suvà, Mario L | Cell. | 2019 Aug 08; | 31327527 | |
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| Structural characterization of life-extending Caenorhabditis elegans Lipid Binding Protein 8. | Tillman, Matthew C; Khadka, Manoj; Duffy, Jonathon; Wang, Meng C; Ortlund, Eric A | Scientific reports. | 2019 Jul 10; | 31292465 | |
| The RNA encoding the microtubule-associated protein tau has extensive structure that affects its biology. | Chen, Jonathan L; Moss, Walter N; Spencer, Adam; Zhang, Peiyuan; Childs-Disney, Jessica L; Disney, Matthew D | PloS one. | 2019; | 31291322 | |
| Novel Pyrrolo[3,2-d]pyrimidine Compounds Target Mitochondrial and Cytosolic One-carbon Metabolism with Broad-spectrum Antitumor Efficacy. | Dekhne, Aamod S; Shah, Khushbu; Ducker, Gregory S; Katinas, Jade M; Wong-Roushar, Jennifer; Nayeen, Md Junayed; Doshi, Arpit; Ning, Changwen; Bao, Xun; Frühauf, Josephine; Liu, Jenney; Wallace-Povirk, Adrianne; O'Connor, Carrie; Dzinic, Sijana H; White, Kathryn; Kushner, Juiwanna; Kim, Seongho; Hüttemann, Maik; Polin, Lisa; Rabinowitz, Joshua D; Li, Jing; Hou, Zhanjun; Dann 3rd, Charles E; Gangjee, Aleem; Matherly, Larry H | Molecular cancer therapeutics. | 2019 10; | 31289137 | |
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| Transcriptomic Profiling of the Developing Cardiac Conduction System at Single-Cell Resolution. | Goodyer, William Rowland; Beyersdorf, Benjamin; Paik, David T; Tian, Lei; Li, Guang; Buikema, Jan W; Chirikian, Orlando; Choi, Shannon; Venkatraman, Sneha; Adams, Eliza L; Tessier-Lavigne, Marc; Wu, Joseph C; Wu, Sean M | Circulation research. | 2019 Jul 09; | 31284824 | |
| Longitudinal Two-Photon Imaging of Dorsal Hippocampal CA1 in Live Mice. | Ulivi, Alessandro F; Castello-Waldow, Tim P; Weston, Ghabiba; Yan, Long; Yasuda, Ryohei; Chen, Alon; Attardo, Alessio | Journal of visualized experiments : JoVE. | 2019 06 19; | 31282875 | |
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| lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA. | Schertzer, Megan D; Braceros, Keean C A; Starmer, Joshua; Cherney, Rachel E; Lee, David M; Salazar, Gabriela; Justice, Megan; Bischoff, Steven R; Cowley, Dale O; Ariel, Pablo; Zylka, Mark J; Dowen, Jill M; Magnuson, Terry; Calabrese, J Mauro | Molecular cell. | 2019 Aug 08; | 31256989 | |
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| A comprehensive, multiscale framework for evaluation of arrhythmias arising from cell therapy in the whole post-myocardial infarcted heart. | Yu, Joseph K; Franceschi, William; Huang, Qinwen; Pashakhanloo, Farhad; Boyle, Patrick M; Trayanova, Natalia A | Scientific reports. | 2019 Jun 25; | 31239508 | |
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| A Stromal Niche Defined by Expression of the Transcription Factor WT1 Mediates Programming and Homeostasis of Cavity-Resident Macrophages. | Buechler, Matthew B; Kim, Ki-Wook; Onufer, Emily J; Williams, Jesse W; Little, Christine C; Dominguez, Claudia X; Li, Qingling; Sandoval, Wendy; Cooper, Jonathan E; Harris, Charles A; Junttila, Melissa R; Randolph, Gwendalyn J; Turley, Shannon J | Immunity. | 2019 07 16; | 31231034 | |
| DNA Microscopy: Optics-free Spatio-genetic Imaging by a Stand-Alone Chemical Reaction. | Weinstein, Joshua A; Regev, Aviv; Zhang, Feng | Cell. | 2019 06 27; | 31230717 | |
| Impacts of obesity, maternal obesity and nicotinamide mononucleotide supplementation on sperm quality in mice. | Youngson, Neil A; Uddin, G Mezbah; Das, Abhirup; Martinez, Carl; Connaughton, Haley S; Whiting, Sara; Yu, Josephine; Sinclair, David A; Aitken, R John; Morris, Margaret J | Reproduction (Cambridge, England). | 2019 08 01; | 31226694 | |
| Nucleic Acid Detection of Plant Genes Using CRISPR-Cas13. | Abudayyeh, Omar O; Gootenberg, Jonathan S; Kellner, Max J; Zhang, Feng | The CRISPR journal. | 2019 06; | 31225754 | |
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| Quantitative evidence for early metastatic seeding in colorectal cancer. | Hu, Zheng; Ding, Jie; Ma, Zhicheng; Sun, Ruping; Seoane, Jose A; Scott Shaffer, J; Suarez, Carlos J; Berghoff, Anna S; Cremolini, Chiara; Falcone, Alfredo; Loupakis, Fotios; Birner, Peter; Preusser, Matthias; Lenz, Heinz-Josef; Curtis, Christina | Nature genetics. | 2019 Jul; | 31209394 | |
| Cas9+ conditionally-immortalized macrophages as a tool for bacterial pathogenesis and beyond. | Roberts, Allison W; Popov, Lauren M; Mitchell, Gabriel; Ching, Krystal L; Licht, Daniel J; Golovkine, Guillaume; Barton, Gregory M; Cox, Jeffery S | eLife. | 2019 Jun 17; | 31204998 | |
| A Specialized Neural Circuit Gates Social Vocalizations in the Mouse. | Tschida, Katherine; Michael, Valerie; Takatoh, Jun; Han, Bao-Xia; Zhao, Shengli; Sakurai, Katsuyasu; Mooney, Richard; Wang, Fan | Neuron. | 2019 08 07; | 31204083 | |
| Structural mechanism for NEK7-licensed activation of NLRP3 inflammasome. | Sharif, Humayun; Wang, Li; Wang, Wei Li; Magupalli, Venkat Giri; Andreeva, Liudmila; Qiao, Qi; Hauenstein, Arthur V; Wu, Zhaolong; Núñez, Gabriel; Mao, Youdong; Wu, Hao | Nature. | 2019 Jun; | 31189953 | |
| Divergence in the functional organization of human and macaque auditory cortex revealed by fMRI responses to harmonic tones. | Norman-Haignere, Sam V; Kanwisher, Nancy; McDermott, Josh H; Conway, Bevil R | Nature neuroscience. | 2019 Jun 10; | 31182868 | |
| Sensitivity of Ablation Targets Prediction to Electrophysiological Parameter Variability in Image-Based Computational Models of Ventricular Tachycardia in Post-infarction Patients. | Deng, Dongdong; Prakosa, Adityo; Shade, Julie; Nikolov, Plamen; Trayanova, Natalia A | Frontiers in physiology. | 2019; | 31178758 | |
| Piwi/PRG-1 Argonaute and TGF-? Mediate Transgenerational Learned Pathogenic Avoidance. | Moore, Rebecca S; Kaletsky, Rachel; Murphy, Coleen T | Cell. | 2019 Jun 13; | 31178117 | |
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| Self-organization of stem cells into embryos: A window on early mammalian development. | Shahbazi, Marta N; Siggia, Eric D; Zernicka-Goetz, Magdalena | Science (New York, N.Y.) | 2019 Jun 07 | 31171690 | |
| Accurate Estimation of Neural Population Dynamics without Spike Sorting. | Trautmann, Eric M; Stavisky, Sergey D; Lahiri, Subhaneil; Ames, Katherine C; Kaufman, Matthew T; O'Shea, Daniel J; Vyas, Saurabh; Sun, Xulu; Ryu, Stephen I; Ganguli, Surya; Shenoy, Krishna V | Neuron. | 2019 07 17; | 31171448 | |
| The metabolites NADP+ and NADPH are the targets of the circadian protein Nocturnin (Curled). | Estrella, Michael A; Du, Jin; Chen, Li; Rath, Sneha; Prangley, Eliza; Chitrakar, Alisha; Aoki, Tsutomu; Schedl, Paul; Rabinowitz, Joshua; Korennykh, Alexei | Nature communications. | 2019 05 30; | 31147539 | |
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| Cas13-induced cellular dormancy prevents the rise of CRISPR-resistant bacteriophage. | Meeske, Alexander J; Nakandakari-Higa, Sandra; Marraffini, Luciano A | Nature. | 2019 Jun; | 31142834 | |
| Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development. | Li, Guang; Tian, Lei; Goodyer, William; Kort, Eric J; Buikema, Jan W; Xu, Adele; Wu, Joseph C; Jovinge, Stefan; Wu, Sean M | Development (Cambridge, England). | 2019 Jun 14; | 31142541 | |
| Targeted Degradation of a Hypoxia-Associated Non-coding RNA Enhances the Selectivity of a Small Molecule Interacting with RNA. | Costales, Matthew G; Suresh, Blessy; Vishnu, Kamalakannan; Disney, Matthew D | Cell chemical biology. | 2019 Aug 15; | 31130520 | |
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| Loss of Adaptive Myelination Contributes to Methotrexate Chemotherapy-Related Cognitive Impairment. | Geraghty, Anna C; Gibson, Erin M; Ghanem, Reem A; Greene, Jacob J; Ocampo, Alfonso; Goldstein, Andrea K; Ni, Lijun; Yang, Tao; Marton, Rebecca M; Pa?ca, Sergiu P; Greenberg, Michael E; Longo, Frank M; Monje, Michelle | Neuron. | 2019 Jul 17; | 31122677 | |
| Transient, Consequential Increases in Extracellular Potassium Ions Accompany Channelrhodopsin2 Excitation. | Octeau, J Christopher; Gangwani, Mohitkumar R; Allam, Sushmita L; Tran, Duy; Huang, Shuhan; Hoang-Trong, Tuan M; Golshani, Peyman; Rumbell, Timothy H; Kozloski, James R; Khakh, Baljit S | Cell reports. | 2019 May 21; | 31116972 | |
| Quantitative in vivo imaging of neuronal glucose concentrations with a genetically encoded fluorescence lifetime sensor. | Díaz-García, Carlos Manlio; Lahmann, Carolina; Martínez-François, Juan Ramón; Li, Binsen; Koveal, Dorothy; Nathwani, Nidhi; Rahman, Mahia; Keller, Jacob P; Marvin, Jonathan S; Looger, Loren L; Yellen, Gary | Journal of neuroscience research. | 2019 Aug; | 31106909 | |
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| Conscious awareness is necessary for affective faces to influence social judgments. | Kleckner, Ian R; Anderson, Eric C; Betz, Nicole J; Wormwood, Jolie B; Eskew Jr, Rhea T; Barrett, Lisa Feldman | Journal of experimental social psychology. | 2018 Nov; | 31097841 | |
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| Two-Color Volumetric Imaging of Neuronal Activity of Cortical Columns. | Han, Shuting; Yang, Weijian; Yuste, Rafael | Cell reports. | 2019 May 14; | 31091458 | |
| Unexpected connections between type VI-B CRISPR-Cas systems, bacterial natural competence, ubiquitin signaling network and DNA modification through a distinct family of membrane proteins. | Makarova, Kira S; Gao, Linyi; Zhang, Feng; Koonin, Eugene V | FEMS microbiology letters. | 2019 04 01; | 31089700 | |
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| Islands of retroelements are major components of Drosophila centromeres. | Chang, Ching-Ho; Chavan, Ankita; Palladino, Jason; Wei, Xiaolu; Martins, Nuno M C; Santinello, Bryce; Chen, Chin-Chi; Erceg, Jelena; Beliveau, Brian J; Wu, Chao-Ting; Larracuente, Amanda M; Mellone, Barbara G | PLoS biology. | 2019 05; | 31086362 | |
| Aged blood impairs hippocampal neural precursor activity and activates microglia via brain endothelial cell VCAM1. | Yousef, Hanadie; Czupalla, Cathrin J; Lee, Davis; Chen, Michelle B; Burke, Ashley N; Zera, Kristy A; Zandstra, Judith; Berber, Elisabeth; Lehallier, Benoit; Mathur, Vidhu; Nair, Ramesh V; Bonanno, Liana N; Yang, Andrew C; Peterson, Todd; Hadeiba, Husein; | Nature medicine. | 2019 06; | 31086348 | |
| Light-sheet microscopy in the near-infrared II window. | Wang, Feifei; Wan, Hao; Ma, Zhuoran; Zhong, Yeteng; Sun, Qinchao; Tian, Ye; Qu, Liangqiong; Du, Haotian; Zhang, Mingxi; Li, Lulin; Ma, Huilong; Luo, Jian; Liang, Yongye; Li, Wen Jung; Hong, Guosong; Liu, Lianqing; Dai, Hongjie | Nature methods. | 2019 Jun; | 31086342 | |
| Light-based control of metabolic flux through assembly of synthetic organelles. | Zhao, Evan M; Suek, Nathan; Wilson, Maxwell Z; Dine, Elliot; Pannucci, Nicole L; Gitai, Zemer; Avalos, José L; Toettcher, Jared E | Nature chemical biology. | 2019 06; | 31086330 | |
| Microfluidic-based transcriptomics reveal force-independent bacterial rheosensing. | Sanfilippo, Joseph E; Lorestani, Alexander; Koch, Matthias D; Bratton, Benjamin P; Siryaporn, Albert; Stone, Howard A; Gitai, Zemer | Nature microbiology. | 2019 May 13; | 31086313 | |
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| Reciprocal Activation within a Kinase-Effector Complex Underlying Persistence of Structural LTP. | Saneyoshi, Takeo; Matsuno, Hitomi; Suzuki, Akio; Murakoshi, Hideji; Hedrick, Nathan G; Agnello, Emily; O'Connell, Rory; Stratton, Margaret M; Yasuda, Ryohei; Hayashi, Yasunori | Neuron. | 2019 Jun 19; | 31078368 | |
| Representational similarity precedes category selectivity in the developing ventral visual pathway. | Cohen, Michael A; Dilks, Daniel D; Koldewyn, Kami; Weigelt, Sarah; Feather, Jenelle; Kell, Alexander Je; Keil, Boris; Fischl, Bruce; Zöllei, Lilla; Wald, Lawrence; Saxe, Rebecca; Kanwisher, Nancy | NeuroImage. | 2019 May 08; | 31077844 | |
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| Spacer Acquisition Rates Determine the Immunological Diversity of the Type II CRISPR-Cas Immune Response. | Heler, Robert; Wright, Addison V; Vucelja, Marija; Doudna, Jennifer A; Marraffini, Luciano A | Cell host & microbe. | 2019 02 13; | 30709780 | |
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| Dysregulation of Adenosinergic Signaling in Systemic and Organ-Specific Autoimmunity. | Vuerich, Marta; Harshe, Rasika P; Robson, Simon C; Longhi, Maria Serena | International journal of molecular sciences. | 2019 Jan 27; | 30691212 | |
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| Structured Odorant Response Patterns across a Complete Olfactory Receptor Neuron Population. | Si, Guangwei; Kanwal, Jessleen K; Hu, Yu; Tabone, Christopher J; Baron, Jacob; Berck, Matthew; Vignoud, Gaetan; Samuel, Aravinthan D T | Neuron. | 2019 03 06; | 30683545 | |
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| Intensiometric biosensors visualize the activity of multiple small GTPases in vivo. | Kim, Jihoon; Lee, Sangkyu; Jung, Kanghoon; Oh, Won Chan; Kim, Nury; Son, Seungkyu; Jo, YoungJu; Kwon, Hyung-Bae; Do Heo, Won | Nature communications. | 2019 01 14; | 30643148 | |
| Single-cell transcriptomic analysis of mouse neocortical development. | Loo, Lipin; Simon, Jeremy M; Xing, Lei; McCoy, Eric S; Niehaus, Jesse K; Guo, Jiami; Anton, E S; Zylka, Mark J | Nature communications. | 2019 01 11; | 30635555 | |
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| Bacteria-to-Human Protein Networks Reveal Origins of Endogenous DNA Damage. | Xia, Jun; Chiu, Li-Ya; Nehring, Ralf B; Bravo Núñez, María Angélica; Mei, Qian; Perez, Mercedes; Zhai, Yin; Fitzgerald, Devon M; Pribis, John P; Wang, Yumeng; Hu, Chenyue W; Powell, Reid T; LaBonte, Sandra A; Jalali, Ali; Matadamas Guzmán, Meztli L; Lentzsch, Alfred M; Szafran, Adam T; Joshi, Mohan C; Richters, Megan; Gibson, Janet L; Frisch, Ryan L; Hastings, P J; Bates, David; Queitsch, Christine; Hilsenbeck, Susan G; Coarfa, Cristian; Hu, James C; Siegele, Deborah A; Scott, Kenneth L; Liang, Han; Mancini, Michael A; Herman, Christophe; Miller, Kyle M; Rosenberg, Susan M | Cell. | 2019 01 10; | 30633903 | |
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| Identifying Protein Features Responsible for Improved Drug Repurposing Accuracies Using the CANDO Platform: Implications for Drug Design. | Mangione, William; Samudrala, Ram | Molecules (Basel, Switzerland). | 2019 Jan 04; | 30621144 | |
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| Initiation of a High-Frequency Jet Ventilation Strategy for Catheter Ablation for Atrial Fibrillation: Safety and Outcomes Data. | Sivasambu, Bhradeev; Hakim, Joe B; Barodka, Viachaslau; Chrispin, Jonathan; Berger, Ronald D; Ashikaga, Hiroshi; Ciuffo, Luisa; Tao, Susumu; Calkins, Hugh; Marine, Joseph E; Trayanova, Natalia; Spragg, David D | JACC. Clinical electrophysiology. | 2018 Dec; | 30573114 | |
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| Degradation of T-Tubular Microdomains and Altered cAMP Compartmentation Lead to Emergence of Arrhythmogenic Triggers in Heart Failure Myocytes: An in silico Study. | Loucks, Alexandra D; O'Hara, Thomas; Trayanova, Natalia A | Frontiers in physiology. | 2018; | 30564142 | |
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| Neuronal photoactivation through second-harmonic near-infrared absorption by gold nanoparticles. | de Boer, Wieteke D A M; Hirtz, Jan J; Capretti, Antonio; Gregorkiewicz, Tom; Izquierdo-Serra, Mercè; Han, Shuting; Dupre, Christophe; Shymkiv, Yuriy; Yuste, Rafael | Light, science & applications. | 2018; | 30534369 | |
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| Unveiling the Role of the Most Impactful Cardiovascular Risk Locus through Haplotype Editing. | Lo Sardo, Valentina; Chubukov, Pavel; Ferguson, William; Kumar, Aditya; Teng, Evan L; Duran, Michael; Zhang, Lei; Cost, Gregory; Engler, Adam J; Urnov, Fyodor; Topol, Eric J; Torkamani, Ali; Baldwin, Kristin K | Cell. | 2018 Dec 13; | 30528432 | |
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| The Hairpin Form of r(G4C2)exp in c9ALS/FTD Is Repeat-Associated Non-ATG Translated and a Target for Bioactive Small Molecules. | Wang, Zi-Fu; Ursu, Andrei; Childs-Disney, Jessica L; Guertler, Rea; Yang, Wang-Yong; Bernat, Viachaslau; Rzuczek, Suzanne G; Fuerst, Rita; Zhang, Yong-Jie; Gendron, Tania F; Yildirim, Ilyas; Dwyer, Brendan G; Rice, Joseph E; Petrucelli, Leonard; Disney, M | Cell chemical biology. | 2018 Nov 29; | 30503283 | |
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| New Drosophila Long-Term Memory Genes Revealed by Assessing Computational Function Prediction Methods. | Kacsoh, Balint Z; Barton, Stephen; Jiang, Yuxiang; Zhou, Naihui; Mooney, Sean D; Friedberg, Iddo; Radivojac, Predrag; Greene, Casey S; Bosco, Giovanni | G3 (Bethesda, Md.). | 2019 01 09; | 30463884 | |
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| Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice. | Conine, Colin C; Sun, Fengyun; Song, Lina; Rivera-Pérez, Jaime A; Rando, Oliver J | Developmental cell. | 2018 08 20; | 30057276 | |
| Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm. | Sharma, Upasna; Sun, Fengyun; Conine, Colin C; Reichholf, Brian; Kukreja, Shweta; Herzog, Veronika A; Ameres, Stefan L; Rando, Oliver J | Developmental cell. | 2018 08 20; | 30057273 | |
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| Exploring early human brain development with structural and physiological neuroimaging. | Vasung, Lana; Abaci Turk, Esra; Ferradal, Silvina L; Sutin, Jason; Stout, Jeffrey N; Ahtam, Banu; Lin, Pei-Yi; Grant, P Ellen | NeuroImage. | 2019 02 15; | 30041061 | |
| Escherichia coli translation strategies differ across carbon, nitrogen and phosphorus limitation conditions. | Li, Sophia Hsin-Jung; Li, Zhiyuan; Park, Junyoung O; King, Christopher G; Rabinowitz, Joshua D; Wingreen, Ned S; Gitai, Zemer | Nature microbiology. | 2018 Aug; | 30038306 | |
| Mapping the Genetic Landscape of Human Cells. | Horlbeck, Max A; Xu, Albert; Wang, Min; Bennett, Neal K; Park, Chong Y; Bogdanoff, Derek; Adamson, Britt; Chow, Eric D; Kampmann, Martin; Peterson, Tim R; Nakamura, Ken; Fischbach, Michael A; Weissman, Jonathan S; Gilbert, Luke A | Cell. | 2018 Aug 09; | 30033366 | |
| 5,10-methenyltetrahydrofolate synthetase deficiency causes a neurometabolic disorder associated with microcephaly, epilepsy, and cerebral hypomyelination. | Rodan, Lance H; Qi, Wanshu; Ducker, Gregory S; Demirbas, Didem; Laine, Regina; Yang, Edward; Walker, Melissa A; Eichler, Florian; Rabinowitz, Joshua D; Anselm, Irina; Berry, Gerard T; Undiagnosed Diseases Network (UDN) | Molecular genetics and metabolism. | 2018 09; | 30031689 | |
| Enzymatic one-step ring contraction for quinolone biosynthesis. | Kishimoto, Shinji; Hara, Kodai; Hashimoto, Hiroshi; Hirayama, Yuichiro; Champagne, Pier Alexandre; Houk, Kendall N; Tang, Yi; Watanabe, Kenji | Nature communications. | 2018 Jul 19; | 30026518 | |
| Drosophila species learn dialects through communal living. | Kacsoh, Balint Z; Bozler, Julianna; Bosco, Giovanni | PLoS genetics. | 2018 07; | 30024883 | |
| Evaluating Public Health Interventions: 8. Causal Inference for Time-Invariant Interventions. | Spiegelman, Donna; Zhou, Xin | American journal of public health. | 2018 09; | 30024804 | |
| GIVE: portable genome browsers for personal websites. | Cao, Xiaoyi; Yan, Zhangming; Wu, Qiuyang; Zheng, Alvin; Zhong, Sheng | Genome biology. | 2018 07 18; | 30016975 | |
| Spreading depolarizations trigger caveolin-1-dependent endothelial transcytosis. | Sadeghian, Homa; Lacoste, Baptiste; Qin, Tao; Toussay, Xavier; Rosa, Roberto; Oka, Fumiaki; Chung, David Y; Takizawa, Tsubasa; Gu, Chenghua; Ayata, Cenk | Annals of neurology. | 2018 Sep; | 30014540 | |
| PKC? integrates spatiotemporally distinct Ca2+ and autocrine BDNF signaling to facilitate synaptic plasticity. | Colgan, Lesley A; Hu, Mo; Misler, Jaime A; Parra-Bueno, Paula; Moran, Corey M; Leitges, Michael; Yasuda, Ryohei | Nature neuroscience. | 2018 Aug; | 30013171 | |
| Small near-infrared photochromic protein for photoacoustic multi-contrast imaging and detection of protein interactions in vivo. | Li, Lei; Shemetov, Anton A; Baloban, Mikhail; Hu, Peng; Zhu, Liren; Shcherbakova, Daria M; Zhang, Ruiying; Shi, Junhui; Yao, Junjie; Wang, Lihong V; Verkhusha, Vladislav V | Nature communications. | 2018 Jul 16; | 30013153 | |
| Multiple robust estimation of marginal structural mean models for unconstrained outcomes. | Babino, Lucia; Rotnitzky, Andrea; Robins, James | Biometrics. | 2019 03; | 30004573 | |
| Ultraconserved Elements Occupy Specific Arenas of Three-Dimensional Mammalian Genome Organization. | McCole, Ruth B; Erceg, Jelena; Saylor, Wren; Wu, Chao-Ting | Cell reports. | 2018 Jul 10; | 29996107 | |
| Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action. | Yan, Yan; Liu, Qikun; Zang, Xin; Yuan, Shuguang; Bat-Erdene, Undramaa; Nguyen, Calvin; Gan, Jianhua; Zhou, Jiahai; Jacobsen, Steven E; Tang, Yi | Nature. | 2018 Jul; | 29995859 | |
| Automated in vivo patch-clamp evaluation of extracellular multielectrode array spike recording capability. | Allen, Brian D; Moore-Kochlacs, Caroline; Bernstein, Jacob G; Kinney, Justin P; Scholvin, Jorg; Seoane, Luís F; Chronopoulos, Chris; Lamantia, Charlie; Kodandaramaiah, Suhasa B; Tegmark, Max; Boyden, Edward S | Journal of neurophysiology. | 2018 11 01; | 29995597 | |
| Attentional fluctuations induce shared variability in macaque primary visual cortex. | Denfield, George H; Ecker, Alexander S; Shinn, Tori J; Bethge, Matthias; Tolias, Andreas S | Nature communications. | 2018 07 09; | 29985411 | |
| A Temperature Gradient Assay to Determine Thermal Preferences of Drosophila Larvae. | Liu, Jiangqu; Sokabe, Takaaki; Montell, Craig | Journal of visualized experiments : JoVE. | ; | 29985331 | |
| Dual-axis illumination for virtually augmenting the detection view of optical-resolution photoacoustic microscopy. | Hsu, Hsun-Chia; Li, Lei; Yao, Junjie; Wong, Terence T W; Shi, Junhui; Chen, Ruimin; Zhou, Qifa; Wang, Lihong | Journal of biomedical optics. | 2018 Jul; | 29981225 | |
| FlashFry: a fast and flexible tool for large-scale CRISPR target design. | McKenna, Aaron; Shendure, Jay | BMC biology. | 2018 Jul 05; | 29976198 | |
| An open-source tool for analysis and automatic identification of dendritic spines using machine learning. | Smirnov, Michael S; Garrett, Tavita R; Yasuda, Ryohei | PloS one. | 2018; | 29975722 | |
| Classification of Single Particles from Human Cell Extract Reveals Distinct Structures. | Verbeke, Eric J; Mallam, Anna L; Drew, Kevin; Marcotte, Edward M; Taylor, David W | Cell reports. | 2018 07 03; | 29972786 | |
| Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment. | Azizi, Elham; Carr, Ambrose J; Plitas, George; Cornish, Andrew E; Konopacki, Catherine; Prabhakaran, Sandhya; Nainys, Juozas; Wu, Kenmin; Kiseliovas, Vaidotas; Setty, Manu; Choi, Kristy; Fromme, Rachel M; Dao, Phuong; McKenney, Peter T; Wasti, Ruby C; Kad | Cell. | 2018 Aug 23; | 29961579 | |
| Recovering Gene Interactions from Single-Cell Data Using Data Diffusion. | van Dijk, David; Sharma, Roshan; Nainys, Juozas; Yim, Kristina; Kathail, Pooja; Carr, Ambrose J; Burdziak, Cassandra; Moon, Kevin R; Chaffer, Christine L; Pattabiraman, Diwakar; Bierie, Brian; Mazutis, Linas; Wolf, Guy; Krishnaswamy, Smita; Pe'er, Dana | Cell. | 2018 07 26; | 29961576 | |
| Four Key Steps Control Glycolytic Flux in Mammalian Cells. | Tanner, Lukas Bahati; Goglia, Alexander G; Wei, Monica H; Sehgal, Talen; Parsons, Lance R; Park, Junyoung O; White, Eileen; Toettcher, Jared E; Rabinowitz, Joshua D | Cell systems. | 2018 Jul 25; | 29960885 | |
| A method for single-neuron chronic recording from the retina in awake mice. | Hong, Guosong; Fu, Tian-Ming; Qiao, Mu; Viveros, Robert D; Yang, Xiao; Zhou, Tao; Lee, Jung Min; Park, Hong-Gyu; Sanes, Joshua R; Lieber, Charles M | Science (New York, N.Y.). | 2018 Jun 29; | 29954976 | |
| Declining responsiveness to influenza vaccination with progression of human pregnancy. | Schlaudecker, Elizabeth P; Ambroggio, Lilliam; McNeal, Monica M; Finkelman, Fred D; Way, Sing Sing | Vaccine. | 2018 07 25; | 29941326 | |
| Reassessment of c-Kit in Cardiac Cells: A Complex Interplay Between Expression, Fate, and Function. | Zhou, Bin; Wu, Sean M | Circulation research. | 2018 Jun 22; | 29929968 | |
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| MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline. | Lu, Jinghao; Li, Chunyuan; Singh-Alvarado, Jonnathan; Zhou, Zhe Charles; Fröhlich, Flavio; Mooney, Richard; Wang, Fan | Cell reports. | 2018 Jun 19; | 29925007 | |
| DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis. | Kular, Lara; Liu, Yun; Ruhrmann, Sabrina; Zheleznyakova, Galina; Marabita, Francesco; Gomez-Cabrero, David; James, Tojo; Ewing, Ewoud; Lindén, Magdalena; Górnikiewicz, Bartosz; Aeinehband, Shahin; Stridh, Pernilla; Link, Jenny; Andlauer, Till F M; Gasperi, Christiane; Wiendl, Heinz; Zipp, Frauke; Gold, Ralf; Tackenberg, Björn; Weber, Frank; Hemmer, Bernhard; Strauch, Konstantin; Heilmann-Heimbach, Stefanie; Rawal, Rajesh; Schminke, Ulf; Schmidt, Carsten O; Kacprowski, Tim; Franke, Andre; Laudes, Matthias; Dilthey, Alexander T; Celius, Elisabeth G; Søndergaard, Helle B; Tegnér, Jesper; Harbo, Hanne F; Oturai, Annette B; Olafsson, Sigurgeir; Eggertsson, Hannes P; Halldorsson, Bjarni V; Hjaltason, Haukur; Olafsson, Elias; Jonsdottir, Ingileif; Stefansson, Kari; Olsson, Tomas; Piehl, Fredrik; Ekström, Tomas J; Kockum, Ingrid; Feinberg, Andrew P; Jagodic, Maja | Nature communications. | 2018 06 19; | 29921915 | |
| Lamellar projections in the endolymphatic sac act as a relief valve to regulate inner ear pressure. | Swinburne, Ian A; Mosaliganti, Kishore R; Upadhyayula, Srigokul; Liu, Tsung-Li; Hildebrand, David G C; Tsai, Tony Y-C; Chen, Anzhi; Al-Obeidi, Ebaa; Fass, Anna K; Malhotra, Samir; Engert, Florian; Lichtman, Jeff W; Kirchhausen, Tomas; Betzig, Eric; Megason, Sean G | eLife. | 2018 06 19; | 29916365 | |
| Fingerprint Stimulated Raman Scattering Imaging Reveals Retinoid Coupling Lipid Metabolism and Survival. | Chen, Andy J; Li, Junjie; Jannasch, Amber; Mutlu, Ayse Sena; Wang, Meng C; Cheng, Ji-Xin | Chemphyschem : a European journal of chemical physics and physical chemistry. | 2018 10 05; | 29911339 | |
| RGS14 Restricts Plasticity in Hippocampal CA2 by Limiting Postsynaptic Calcium Signaling. | Evans, Paul R; Parra-Bueno, Paula; Smirnov, Michael S; Lustberg, Daniel J; Dudek, Serena M; Hepler, John R; Yasuda, Ryohei | eNeuro. | 2018 May-Jun; | 29911178 | |
| Single-breath-hold photoacoustic computed tomography of the breast. | Lin, Li; Hu, Peng; Shi, Junhui; Appleton, Catherine M; Maslov, Konstantin; Li, Lei; Zhang, Ruiying; Wang, Lihong V | Nature communications. | ; | 29907740 | |
| Limited Macrophage Positional Dynamics in Progressing or Regressing Murine Atherosclerotic Plaques. | Williams, Jesse W; Martel, Catherine; Potteaux, Stephane; Esaulova, Ekaterina; Ingersoll, Molly A; Elvington, Andrew; Saunders, Brian T; Huang, Li-Hao; Habenicht, Andreas J; Zinselmeyer, Bernd H; Randolph, Gwendalyn J | Arteriosclerosis, thrombosis, and vascular biology. | ; | 29903736 | |
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| Bright quantum dots emitting at ?1,600 nm in the NIR-IIb window for deep tissue fluorescence imaging. | Zhang, Mingxi; Yue, Jingying; Cui, Ran; Ma, Zhuoran; Wan, Hao; Wang, Feifei; Zhu, Shoujun; Zhou, Ying; Kuang, Yun; Zhong, Yeteng; Pang, Dai-Wen; Dai, Hongjie | Proceedings of the National Academy of Sciences of the United States of America. | 2018 06 26; | 29891702 | |
| Unsupervised Discovery of Demixed, Low-Dimensional Neural Dynamics across Multiple Timescales through Tensor Component Analysis. | Williams, Alex H; Kim, Tony Hyun; Wang, Forea; Vyas, Saurabh; Ryu, Stephen I; Shenoy, Krishna V; Schnitzer, Mark; Kolda, Tamara G; Ganguli, Surya | Neuron. | 2018 06 27; | 29887338 | |
| Role of 3-Dimensional Architecture of Scar and Surviving Tissue in Ventricular Tachycardia: Insights From High-Resolution Ex Vivo Porcine Models. | Pashakhanloo, Farhad; Herzka, Daniel A; Halperin, Henry; McVeigh, Elliot R; Trayanova, Natalia A | Circulation. Arrhythmia and electrophysiology. | ; | 29880529 | |
| Left-Lateralized Contributions of Saccades to Cortical Activity During a One-Back Word Recognition Task. | Chang, Yu-Cherng C; Khan, Sheraz; Taulu, Samu; Kuperberg, Gina; Brown, Emery N; Hämäläinen, Matti S; Temereanca, Simona | Frontiers in neural circuits. | 2018; | 29867372 | |
| A disconnect between precursor frequency, expansion potential, and site-specific CD4+ T cell responses in aged mice. | Deshpande, Neha R; Uhrlaub, Jennifer L; Way, Sing Sing; Nikolich-?ugich, Janko; Kuhns, Michael S | PloS one. | 2018; | 29864157 | |
| Access of choice-disabled young women in Botswana to government structural support programmes: a cross-sectional study. | Cockcroft, Anne; Marokoane, Nobantu; Kgakole, Leagajang; Tswetla, Nametsego; Andersson, Neil | AIDS care | 2018 06 | 29848044 | |
| Early Seizures Prematurely Unsilence Auditory Synapses to Disrupt Thalamocortical Critical Period Plasticity. | Sun, Hongyu; Takesian, Anne E; Wang, Ting Ting; Lippman-Bell, Jocelyn J; Hensch, Takao K; Jensen, Frances E | Cell reports. | 2018 05 29; | 29847785 | |
| Light sheet theta microscopy for rapid high-resolution imaging of large biological samples. | Migliori, Bianca; Datta, Malika S; Dupre, Christophe; Apak, Mehmet C; Asano, Shoh; Gao, Ruixuan; Boyden, Edward S; Hermanson, Ola; Yuste, Rafael; Tomer, Raju | BMC biology. | 2018 May 29; | 29843722 | |
| Quantifying the uncertainty in model parameters using Gaussian process-based Markov chain Monte Carlo in cardiac electrophysiology. | Dhamala, Jwala; Arevalo, Hermenegild J; Sapp, John; Horácek, B Milan; Wu, Katherine C; Trayanova, Natalia A; Wang, Linwei | Medical image analysis. | ; | 29843078 | |
| Single cell genomics to study DNA and chromosome changes in human gametes and embryos. | Blanshard, Robert C; Chen, Chongyi; Xie, Xiaoliang Sunney; Hoffmann, Eva R | Methods in cell biology. | 2018; | 29804682 | |
| A Near-Complete Spatial Map of Olfactory Receptors in the Mouse Main Olfactory Epithelium. | Tan, Longzhi; Xie, Xiaoliang Sunney | Chemical senses. | 2018 Jul 05; | 29796642 | |
| Electroencephalographic markers of brain development during sevoflurane anaesthesia in children up to 3 years old. | Cornelissen, L; Kim, S E; Lee, J M; Brown, E N; Purdon, P L; Berde, C B | British journal of anaesthesia. | 2018 Jun; | 29793594 | |
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| Multiplex assessment of protein variant abundance by massively parallel sequencing. | Matreyek, Kenneth A; Starita, Lea M; Stephany, Jason J; Martin, Beth; Chiasson, Melissa A; Gray, Vanessa E; Kircher, Martin; Khechaduri, Arineh; Dines, Jennifer N; Hause, Ronald J; Bhatia, Smita; Evans, William E; Relling, Mary V; Yang, Wenjian; Shendure, | Nature genetics. | 2018 Jun; | 29785012 | |
| Mycobacterium tuberculosis-specific CD4+ and CD8+ T cells differ in their capacity to recognize infected macrophages. | Yang, Jason D; Mott, Daniel; Sutiwisesak, Rujapak; Lu, Yu-Jung; Raso, Fiona; Stowell, Britni; Babunovic, Greg Hunter; Lee, Jinhee; Carpenter, Steve M; Way, Sing Sing; Fortune, Sarah M; Behar, Samuel M | PLoS pathogens. | 2018 02; | 29782535 | |
| Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. | Berens, Philipp; Freeman, Jeremy; Deneux, Thomas; Chenkov, Nikolay; McColgan, Thomas; Speiser, Artur; Macke, Jakob H; Turaga, Srinivas C; Mineault, Patrick; Rupprecht, Peter; Gerhard, Stephan; Friedrich, Rainer W; Friedrich, Johannes; Paninski, Liam; Pachitariu, Marius; Harris, Kenneth D; Bolte, Ben; Machado, Timothy A; Ringach, Dario; Stone, Jasmine; Rogerson, Luke E; Sofroniew, Nicolas J; Reimer, Jacob; Froudarakis, Emmanouil; Euler, Thomas; Román Rosón, Miroslav; Theis, Lucas; Tolias, Andreas S; Bethge, Matthias | PLoS computational biology. | 2018 05; | 29782491 | |
| Making, Testing, and Using Potassium Ion Selective Microelectrodes in Tissue Slices of Adult Brain. | Octeau, J Christopher; Faas, Guido; Mody, Istvan; Khakh, Baljit S | Journal of visualized experiments : JoVE. | 2018 05 07; | 29781998 | |
| Multiple Click-Selective tRNA Synthetases Expand Mammalian Cell-Specific Proteomics. | Yang, Andrew C; du Bois, Haley; Olsson, Niclas; Gate, David; Lehallier, Benoit; Berdnik, Daniela; Brewer, Kyle D; Bertozzi, Carolyn R; Elias, Joshua E; Wyss-Coray, Tony | Journal of the American Chemical Society. | 2018 06 13; | 29775058 | |
| Single-step Precision Genome Editing in Yeast Using CRISPR-Cas9. | Akhmetov, Azat; Laurent, Jon M; Gollihar, Jimmy; Gardner, Elizabeth C; Garge, Riddhiman K; Ellington, Andrew D; Kachroo, Aashiq H; Marcotte, Edward M | Bio-protocol. | ; | 29770349 | |
| Role of inhibitory control in modulating focal seizure spread. | Liou, Jyun-You; Ma, Hongtao; Wenzel, Michael; Zhao, Mingrui; Baird-Daniel, Eliza; Smith, Elliot H; Daniel, Andy; Emerson, Ronald; Yuste, Rafael; Schwartz, Theodore H; Schevon, Catherine A | Brain : a journal of neurology. | 2018 Jul 01; | 29757347 | |
| Host Energy Source Is Important for Disease Tolerance to Malaria. | Cumnock, Katherine; Gupta, Avni S; Lissner, Michelle; Chevee, Victoria; Davis, Nicole M; Schneider, David S | Current biology : CB. | 2018 05 21; | 29754902 | |
| A Post-Transcriptional Feedback Mechanism for Noise Suppression and Fate Stabilization. | Hansen, Maike M K; Wen, Winnie Y; Ingerman, Elena; Razooky, Brandon S; Thompson, Cassandra E; Dar, Roy D; Chin, Charles W; Simpson, Michael L; Weinberger, Leor S | Cell. | 2018 Jun 14; | 29754821 | |
| Fueling thought: Management of glycolysis and oxidative phosphorylation in neuronal metabolism. | Yellen, Gary | The Journal of cell biology. | 2018 Jul 02; | 29752396 | |
| Cardiac Optogenetics: 2018. | Boyle, Patrick M; Karathanos, Thomas V; Trayanova, Natalia A | JACC. Clinical electrophysiology. | 2018 Feb; | 29749932 | |
| Diverse reprogramming codes for neuronal identity. | Tsunemoto, Rachel; Lee, Sohyon; Sz?cs, Attila; Chubukov, Pavel; Sokolova, Irina; Blanchard, Joel W; Eade, Kevin T; Bruggemann, Jacob; Wu, Chunlei; Torkamani, Ali; Sanna, Pietro Paolo; Baldwin, Kristin K | Nature. | 2018 05; | 29743677 | |
| The Assembly-Activating Protein Promotes Stability and Interactions between AAV's Viral Proteins to Nucleate Capsid Assembly. | Maurer, Anna C; Pacouret, Simon; Cepeda Diaz, Ana Karla; Blake, Jessica; Andres-Mateos, Eva; Vandenberghe, Luk H | Cell reports. | 2018 05 08; | 29742436 | |
| Regulation of seizure-induced MeCP2 Ser421 phosphorylation in the developing brain. | Rosenberg, Evan C; Lippman-Bell, Jocelyn J; Handy, Marcus; Soldan, Samantha S; Rakhade, Sanjay; Hilario-Gomez, Cristina; Folweiler, Kaitlyn; Jacobs, Leah; Jensen, Frances E | Neurobiology of disease. | 2018 08; | 29738885 | |
| A critical role for nucleoporin 358 (Nup358) in transposon silencing and piRNA biogenesis in Drosophila. | Parikh, Rasesh Y; Lin, Haifan; Gangaraju, Vamsi K | The Journal of biological chemistry. | 2018 06 15; | 29735528 | |
| Genome Editing Redefines Precision Medicine in the Cardiovascular Field. | Dzilic, Elda; Lahm, Harald; Dreßen, Martina; Deutsch, Marcus-André; Lange, Rüdiger; Wu, Sean M; Krane, Markus; Doppler, Stefanie A | Stem cells international. | 2018; | 29731778 | |
| A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish. | Haesemeyer, Martin; Robson, Drew N; Li, Jennifer M; Schier, Alexander F; Engert, Florian | Neuron. | 2018 May 16; | 29731253 | |
| Corticoamygdala Transfer of Socially Derived Information Gates Observational Learning. | Allsop, Stephen A; Wichmann, Romy; Mills, Fergil; Burgos-Robles, Anthony; Chang, Chia-Jung; Felix-Ortiz, Ada C; Vienne, Alienor; Beyeler, Anna; Izadmehr, Ehsan M; Glober, Gordon; Cum, Meghan I; Stergiadou, Johanna; Anandalingam, Kavitha K; Farris, Kathryn; Namburi, Praneeth; Leppla, Christopher A; Weddington, Javier C; Nieh, Edward H; Smith, Anne C; Ba, Demba; Brown, Emery N; Tye, Kay M | Cell. | 2018 May 31; | 29731170 | |
| Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria. | Belliveau, Nathan M; Barnes, Stephanie L; Ireland, William T; Jones, Daniel L; Sweredoski, Michael J; Moradian, Annie; Hess, Sonja; Kinney, Justin B; Phillips, Rob | Proceedings of the National Academy of Sciences of the United States of America. | 2018 05 22; | 29728462 | |
| Metabolomics and Isotope Tracing. | Jang, Cholsoon; Chen, Li; Rabinowitz, Joshua D | Cell. | 2018 May 03; | 29727671 | |
| Microbial Genetic Composition Tunes Host Longevity. | Han, Bing; Sivaramakrishnan, Priya; Lin, Chih-Chun J; Neve, Isaiah A A; He, Jingquan; Tay, Li Wei Rachel; Sowa, Jessica N; Sizovs, Antons; Du, Guangwei; Wang, Jin; Herman, Christophe; Wang, Meng C | Cell. | 2018 May 03; | 29727664 | |
| Combinatorial programming of human neuronal progenitors using magnetically-guided stoichiometric mRNA delivery. | Azimi, Sayyed M; Sheridan, Steven D; Ghannad-Rezaie, Mostafa; Eimon, Peter M; Yanik, Mehmet Fatih | eLife. | 2018 05 01; | 29714688 | |
| Development of an optogenetic toolkit for neural circuit dissection in squirrel monkeys. | O'Shea, Daniel J; Kalanithi, Paul; Ferenczi, Emily A; Hsueh, Brian; Chandrasekaran, Chandramouli; Goo, Werapong; Diester, Ilka; Ramakrishnan, Charu; Kaufman, Matthew T; Ryu, Stephen I; Yeom, Kristen W; Deisseroth, Karl; Shenoy, Krishna V | Scientific reports. | 2018 04 30; | 29712920 | |
| Widespread intronic polyadenylation diversifies immune cell transcriptomes. | Singh, Irtisha; Lee, Shih-Han; Sperling, Adam S; Samur, Mehmet K; Tai, Yu-Tzu; Fulciniti, Mariateresa; Munshi, Nikhil C; Mayr, Christine; Leslie, Christina S | Nature communications. | 2018 Apr 30; | 29712909 | |
| A Caenorhabditis elegans protein with a PRDM9-like SET domain localizes to chromatin-associated foci and promotes spermatocyte gene expression, sperm production and fertility. | Engert, Christoph G; Droste, Rita; van Oudenaarden, Alexander; Horvitz, H Robert | PLoS genetics. | 2018 04; | 29702639 | |
| Stage-specific Effects of Bioactive Lipids on Human iPSC Cardiac Differentiation and Cardiomyocyte Proliferation. | Scientific reports. | 2018 Apr 26; | 29700394 | ||
| Field-deployable viral diagnostics using CRISPR-Cas13. | Myhrvold, Cameron; Freije, Catherine A; Gootenberg, Jonathan S; Abudayyeh, Omar O; Metsky, Hayden C; Durbin, Ann F; Kellner, Max J; Tan, Amanda L; Paul, Lauren M; Parham, Leda A; Garcia, Kimberly F; Barnes, Kayla G; Chak, Bridget; Mondini, Adriano; Noguei | Science (New York, N.Y.). | 2018 04 27; | 29700266 | |
| Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. | Science (New York, N.Y.). | 2018 06 01; | 29700225 | ||
| Cryo-EM structure of the gasdermin A3 membrane pore. | Nature. | 2018 May; | 29695864 | ||
| Bridging barriers: a comparative look at the blood-brain barrier across organisms. | O'Brown, Natasha M; Pfau, Sarah J; Gu, Chenghua | Genes & development. | 2018 04 01; | 29692355 | |
| Structural Biology: Piezo Senses Tension through Curvature. | Liang, Xin; Howard, Jonathon | Current biology : CB. | 2018 Apr 23; | 29689211 | |
| Quantitative Analysis of NAD Synthesis-Breakdown Fluxes. | Liu, Ling; Su, Xiaoyang; Quinn 3rd, William J; Hui, Sheng; Krukenberg, Kristin; Frederick, David W; Redpath, Philip; Zhan, Le; Chellappa, Karthikeyani; White, Eileen; Migaud, Marie; Mitchison, Timothy J; Baur, Joseph A; Rabinowitz, Joshua D | Cell metabolism. | 2018 May 01; | 29685734 | |
| Molecular Cancer Imaging in the Second Near-Infrared Window Using a Renal-Excreted NIR-II Fluorophore-Peptide Probe. | Wang, Weizhi; Ma, Zhuoran; Zhu, Shoujun; Wan, Hao; Yue, Jingying; Ma, Huilong; Ma, Rui; Yang, Qinglai; Wang, Zihua; Li, Qian; Qian, Yixia; Yue, Chunyan; Wang, Yuehua; Fan, Linyang; Zhong, Yeteng; Zhou, Ying; Gao, Hongpeng; Ruan, Junshan; Hu, Zhiyuan; Liang, Yongye; Dai, Hongjie | Advanced materials (Deerfield Beach, Fla.). | 2018 May; | 29682821 | |
| The Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex. | Mompeán, Miguel; Li, Wenbo; Li, Jixi; Laage, Ségolène; Siemer, Ansgar B; Bozkurt, Gunes; Wu, Hao; McDermott, Ann E | Cell. | 2018 May 17; | 29681455 | |
| Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. | Filbin, Mariella G; Tirosh, Itay; Hovestadt, Volker; Shaw, McKenzie L; Escalante, Leah E; Mathewson, Nathan D; Neftel, Cyril; Frank, Nelli; Pelton, Kristine; Hebert, Christine M; Haberler, Christine; Yizhak, Keren; Gojo, Johannes; Egervari, Kristof; Mount | Science (New York, N.Y.). | 2018 04 20; | 29674595 | |
| Amelioration of Neurosensory Structure and Function in Animal and Cellular Models of a Congenital Blindness. | Song, Ji Yun; Aravand, Puya; Nikonov, Sergei; Leo, Lanfranco; Lyubarsky, Arkady; Bennicelli, Jeannette L; Pan, Jieyan; Wei, Zhangyong; Shpylchak, Ivan; Herrera, Pamela; Bennett, Daniel J; Commins, Nicoletta; Maguire, Albert M; Pham, Jennifer; den Hollande | Molecular therapy : the journal of the American Society of Gene Therapy. | 2018 Mar 21; | 29673930 | |
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| Zidovudine ameliorates pathology in the mouse model of Duchenne muscular dystrophy via P2RX7 purinoceptor antagonism. | Al-Khalidi, Rasha; Panicucci, Chiara; Cox, Paul; Chira, Natalia; Róg, Justyna; Young, Christopher N J; McGeehan, Rhiannon E; Ambati, Kameshwari; Ambati, Jayakrishna; Zab?ocki, Krzysztof; Gazzerro, Elisabetta; Arkle, Stephen; Bruno, Claudio; Górecki, Dariusz C | Acta neuropathologica communications. | 2018 04 11; | 29642926 | |
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| Pseudotyping of HIV-1 with Human T-Lymphotropic Virus 1 (HTLV-1) Envelope Glycoprotein during HIV-1-HTLV-1 Coinfection Facilitates Direct HIV-1 Infection of Female Genital Epithelial Cells: Implications for Sexual Transmission of HIV-1. | Tang, Yuyang; George, Alvin M; Petrechko, Oksana; Nouvet, Franklin J; Sweet, Stephanie D; Tanaka, Yuetsu; Imbiakha, Brian S; Jiang, Guochun; Gao, Wei; Anastos, Kathryn; Hildreth, James E K | mSphere. | 2018 04 25; | 29624497 | |
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| Cysteine dioxygenase is essential for mouse sperm osmoadaptation and male fertility. | Asano, Atsushi; Roman, Heather B; Hirschberger, Lawrence L; Ushiyama, Ai; Nelson, Jacquelyn L; Hinchman, Meleana M; Stipanuk, Martha H; Travis, Alexander J | The FEBS journal. | 2018 05; | 29604178 | |
| Interbrain cortical synchronization encodes multiple aspects of social interactions in monkey pairs. | Tseng, Po-He; Rajangam, Sankaranarayani; Lehew, Gary; Lebedev, Mikhail A; Nicolelis, Miguel A L | Scientific reports. | 2018 Mar 29; | 29599529 | |
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| Mapping a functional cancer genome atlas of tumor suppressors in mouse liver using AAV-CRISPR-mediated direct in vivo screening. | Wang, Guangchuan; Chow, Ryan D; Ye, Lupeng; Guzman, Christopher D; Dai, Xiaoyun; Dong, Matthew B; Zhang, Feng; Sharp, Phillip A; Platt, Randall J; Chen, Sidi | Science advances. | 2018 02; | 29503867 | |
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| A Phase II Study of Tumor Ablation in Patients with Metastatic Sarcoma Stable on Chemotherapy. | Hirbe, Angela C; Jennings, Jack; Saad, Nael; Giardina, Joseph D; Tao, Yu; Luo, Jingqin; Berry, Shellie; Toeniskoetter, Jacqui; Van Tine, Brian A | The oncologist. | 2018 Jul; | 29487221 | |
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| C. elegans ADARs antagonize silencing of cellular dsRNAs by the antiviral RNAi pathway. | Reich, Daniel P; Tyc, Katarzyna M; Bass, Brenda L | Genes & development. | 2018 02 01; | 29483152 | |
| Relationship Between Fibrosis Detected on Late Gadolinium-Enhanced Cardiac Magnetic Resonance and Re-Entrant Activity Assessed With Electrocardiographic Imaging in Human Persistent Atrial Fibrillation. | Cochet, Hubert; Dubois, Rémi; Yamashita, Seigo; Al Jefairi, Nora; Berte, Benjamin; Sellal, Jean-Marc; Hooks, Darren; Frontera, Antonio; Amraoui, Sana; Zemoura, Adlane; Denis, Arnaud; Derval, Nicolas; Sacher, Frederic; Corneloup, Olivier; Latrabe, Valérie; Clément-Guinaudeau, Stéphanie; Relan, Jatin; Zahid, Sohail; Boyle, Patrick M; Trayanova, Natalia A; Bernus, Olivier; Montaudon, Michel; Laurent, François; Hocini, Mélèze; Haïssaguerre, Michel; Jaïs, Pierre | JACC. Clinical electrophysiology. | 2018 Jan; | 29479568 | |
| Changes in Ugandan Climate Rainfall at the Village and Forest Level. | Ssentongo, Paddy; Muwanguzi, Abraham J B; Eden, Uri; Sauer, Timothy; Bwanga, George; Kateregga, Geoffrey; Aribo, Lawrence; Ojara, Moses; Mugerwa, Wilberforce Kisamba; Schiff, Steven J | Scientific reports. | 2018 Feb 23; | 29476058 | |
| Unique Molecular Regulation of Higher-Order Prefrontal Cortical Circuits: Insights into the Neurobiology of Schizophrenia. | Datta, Dibyadeep; Arnsten, Amy F T | ACS chemical neuroscience. | 2018 Mar 01; | 29470055 | |
| Modifications and functional genomics of human transfer RNA. | Pan, Tao | Cell research. | 2018 Apr; | 29463900 | |
| OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes. | Beliveau, Brian J; Kishi, Jocelyn Y; Nir, Guy; Sasaki, Hiroshi M; Saka, Sinem K; Nguyen, Son C; Wu, Chao-Ting; Yin, Peng | Proceedings of the National Academy of Sciences of the United States of America. | 2018 Mar 06; | 29463736 | |
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| On the design of CRISPR-based single-cell molecular screens. | Hill, Andrew J; McFaline-Figueroa, José L; Starita, Lea M; Gasperini, Molly J; Matreyek, Kenneth A; Packer, Jonathan; Jackson, Dana; Shendure, Jay; Trapnell, Cole | Nature methods. | 2018 Apr; | 29457792 | |
| Neural Population Dynamics Underlying Motor Learning Transfer. | Vyas, Saurabh; Even-Chen, Nir; Stavisky, Sergey D; Ryu, Stephen I; Nuyujukian, Paul; Shenoy, Krishna V | Neuron. | 2018 03 07; | 29456026 | |
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| 3D NIR-II Molecular Imaging Distinguishes Targeted Organs with High-Performance NIR-II Bioconjugates. | Zhu, Shoujun; Herraiz, Sonia; Yue, Jingying; Zhang, Mingxi; Wan, Hao; Yang, Qinglai; Ma, Zhuoran; Wang, Yan; He, Jiahuan; Antaris, Alexander L; Zhong, Yeteng; Diao, Shuo; Feng, Yi; Zhou, Ying; Yu, Kuai; Hong, Guosong; Liang, Yongye; Hsueh, Aaron J; Dai, Hongjie | Advanced materials (Deerfield Beach, Fla.). | 2018 Mar; | 29446156 | |
| A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow. | Proctor, Diana M; Fukuyama, Julia A; Loomer, Peter M; Armitage, Gary C; Lee, Stacey A; Davis, Nicole M; Ryder, Mark I; Holmes, Susan P; Relman, David A | Nature communications. | ; | 29445174 | |
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| Genetic Hitchhiking and Population Bottlenecks Contribute to Prostate Cancer Disparities in Men of African Descent. | Lachance, Joseph; Berens, Ali J; Hansen, Matthew E B; Teng, Andrew K; Tishkoff, Sarah A; Rebbeck, Timothy R | Cancer research. | 2018 05 01; | 29438991 | |
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| Mechanism of ubiquitin transfer promoted by TRAF6. | Fu, Tian-Min; Shen, Chen; Li, Qiubai; Zhang, Pengfei; Wu, Hao | Proceedings of the National Academy of Sciences of the United States of America. | 2018 02 20; | 29432170 | |
| Survival analysis with functions of mismeasured covariate histories: the case of chronic air pollution exposure in relation to mortality in the nurses' health study. | Liao, Xiaomei; Zhou, Xin; Wang, Molin; Hart, Jaime E; Laden, Francine; Spiegelman, Donna | Journal of the Royal Statistical Society. Series C, Applied statistics. | 2018 Feb; | 29430064 | |
| Perinatal high fat diet and early life methyl donor supplementation alter one carbon metabolism and DNA methylation in the brain. | McKee, Sarah E; Zhang, Sisi; Chen, Li; Rabinowitz, Joshua D; Reyes, Teresa M | Journal of neurochemistry. | ; | 29423909 | |
| The Small Intestine Converts Dietary Fructose into Glucose and Organic Acids. | Jang, Cholsoon; Hui, Sheng; Lu, Wenyun; Cowan, Alexis J; Morscher, Raphael J; Lee, Gina; Liu, Wei; Tesz, Gregory J; Birnbaum, Morris J; Rabinowitz, Joshua D | Cell metabolism. | 2018 Feb 06; | 29414685 | |
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| Genome Mining and Assembly-Line Biosynthesis of the UCS1025A Pyrrolizidinone Family of Fungal Alkaloids. | Li, Li; Tang, Man-Cheng; Tang, Shoubin; Gao, Shushan; Soliman, Sameh; Hang, Leibniz; Xu, Wei; Ye, Tao; Watanabe, Kenji; Tang, Yi | Journal of the American Chemical Society. | 2018 Feb 14; | 29373009 | |
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| Nkx2.5+?Cardiomyoblasts Contribute to Cardiomyogenesis in the Neonatal Heart. | Serpooshan, Vahid; Liu, Yuan-Hung; Buikema, Jan W; Galdos, Francisco X; Chirikian, Orlando; Paige, Sharon; Venkatraman, Sneha; Kumar, Anusha; Rawnsley, David R; Huang, Xiaojing; Pijnappels, Daniël A; Wu, Sean M | Scientific reports. | 2017 Oct 03; | 28974782 | |
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| A Single-Chain Photoswitchable CRISPR-Cas9 Architecture for Light-Inducible Gene Editing and Transcription. | Zhou, Xin X; Zou, Xinzhi; Chung, Hokyung K; Gao, Yuchen; Liu, Yanxia; Qi, Lei S; Lin, Michael Z | ACS chemical biology. | 2018 Feb 16; | 28938067 | |
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| Laminar differences in decision-related neural activity in dorsal premotor cortex. | Chandrasekaran, Chandramouli; Peixoto, Diogo; Newsome, William T; Shenoy, Krishna V | Nature communications. | 2017 09 20; | 28931803 | |
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| Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection. | Kuboniwa, Masae; Houser, John R; Hendrickson, Erik L; Wang, Qian; Alghamdi, Samar A; Sakanaka, Akito; Miller, Daniel P; Hutcherson, Justin A; Wang, Tiansong; Beck, David A C; Whiteley, Marvin; Amano, Atsuo; Wang, Huizhi; Marcotte, Edward M; Hackett, Murray; Lamont, Richard J | Nature microbiology. | 2017 Nov; | 28924191 | |
| Tissue Engineering of 3D Organotypic Microtissues by Acoustic Assembly. | Zhu, Yuqing; Serpooshan, Vahid; Wu, Sean; Demirci, Utkan; Chen, Pu; Güven, Sinan | Methods in molecular biology (Clifton, N.J.). | ; | 28921421 | |
| mTOR Inhibition Restores Amino Acid Balance in Cells Dependent on Catabolism of Extracellular Protein. | Nofal, Michel; Zhang, Kevin; Han, Seunghun; Rabinowitz, Joshua D | Molecular cell. | 2017 Sep 21; | 28918901 | |
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| Selenocysteine tRNA[Ser]Sec, the Central Component of Selenoprotein Biosynthesis: Isolation, Identification, Modification, and Sequencing. | Carlson, Bradley A; Lee, Byeong Jae; Tsuji, Petra A; Copeland, Paul R; Schweizer, Ulrich; Gladyshev, Vadim N; Hatfield, Dolph L | Methods in molecular biology (Clifton, N.J.). | 2018; | 28917036 | |
| Chemical Basis for Deuterium Labeling of Fat and NADPH. | Zhang, Zhaoyue; Chen, Li; Liu, Ling; Su, Xiaoyang; Rabinowitz, Joshua D | Journal of the American Chemical Society. | 2017 Oct 18; | 28911221 | |
| Distinct roles for motor neuron autophagy early and late in the SOD1G93A mouse model of ALS. | Rudnick, Noam D; Griffey, Christopher J; Guarnieri, Paolo; Gerbino, Valeria; Wang, Xueyong; Piersaint, Jason A; Tapia, Juan Carlos; Rich, Mark M; Maniatis, Tom | Proceedings of the National Academy of Sciences of the United States of America. | 2017 Sep 26; | 28904095 | |
| The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation. | Wallrapp, Antonia; Riesenfeld, Samantha J; Burkett, Patrick R; Abdulnour, Raja-Elie E; Nyman, Jackson; Dionne, Danielle; Hofree, Matan; Cuoco, Michael S; Rodman, Christopher; Farouq, Daneyal; Haas, Brian J; Tickle, Timothy L; Trombetta, John J; Baral, Pan | Nature. | 2017 09 21; | 28902842 | |
| SAM-dependent enzyme-catalysed pericyclic reactions in natural product biosynthesis. | Ohashi, Masao; Liu, Fang; Hai, Yang; Chen, Mengbin; Tang, Man-Cheng; Yang, Zhongyue; Sato, Michio; Watanabe, Kenji; Houk, K N; Tang, Yi | Nature. | 2017 Sep 28; | 28902839 | |
| Machine Learning Analysis Identifies Drosophila Grunge/Atrophin as an Important Learning and Memory Gene Required for Memory Retention and Social Learning. | Kacsoh, Balint Z; Greene, Casey S; Bosco, Giovanni | G3 (Bethesda, Md.). | 2017 Nov 06; | 28889104 | |
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| CRISPR-Cas9 mediated one-step disabling of pancreatogenesis in pigs. | Wu, Jun; Vilarino, Marcela; Suzuki, Keiichiro; Okamura, Daiji; Bogliotti, Yanina Soledad; Park, Insung; Rowe, Joan; McNabb, Bret; Ross, Pablo Juan; Belmonte, Juan Carlos Izpisua | Scientific reports. | 2017 Sep 05; | 28874671 | |
| Localized CD47 blockade enhances immunotherapy for murine melanoma. | Ingram, Jessica R; Blomberg, Olga S; Sockolosky, Jonathan T; Ali, Lestat; Schmidt, Florian I; Pishesha, Novalia; Espinosa, Camilo; Dougan, Stephanie K; Garcia, K Christopher; Ploegh, Hidde L; Dougan, Michael | Proceedings of the National Academy of Sciences of the United States of America. | 2017 Sep 19; | 28874561 | |
| Risk Factors, Neuroanatomical Correlates, and Outcome of Neuropsychiatric Symptoms in Alzheimer's Disease. | Poulin, Stéphane P; Bergeron, David; Dickerson, Bradford C; Alzheimer?s Disease Neuroimaging Initiative | Journal of Alzheimer's disease : JAD. | 2017; | 28869463 | |
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| Genetic Depletion of Adipocyte Creatine Metabolism Inhibits Diet-Induced Thermogenesis and Drives Obesity. | Kazak, Lawrence; Chouchani, Edward T; Lu, Gina Z; Jedrychowski, Mark P; Bare, Curtis J; Mina, Amir I; Kumari, Manju; Zhang, Song; Vuckovic, Ivan; Laznik-Bogoslavski, Dina; Dzeja, Petras; Banks, Alexander S; Rosen, Evan D; Spiegelman, Bruce M | Cell metabolism. | 2017 Oct 03; | 28844881 | |
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| Comprehensive single-cell transcriptional profiling of a multicellular organism. | Cao, Junyue; Packer, Jonathan S; Ramani, Vijay; Cusanovich, Darren A; Huynh, Chau; Daza, Riza; Qiu, Xiaojie; Lee, Choli; Furlan, Scott N; Steemers, Frank J; Adey, Andrew; Waterston, Robert H; Trapnell, Cole; Shendure, Jay | Science (New York, N.Y.). | 2017 08 18; | 28818938 | |
| Tissue-Resident Macrophages in Pancreatic Ductal Adenocarcinoma Originate from Embryonic Hematopoiesis and Promote Tumor Progression. | Zhu, Yu; Herndon, John M; Sojka, Dorothy K; Kim, Ki-Wook; Knolhoff, Brett L; Zuo, Chong; Cullinan, Darren R; Luo, Jingqin; Bearden, Audrey R; Lavine, Kory J; Yokoyama, Wayne M; Hawkins, William G; Fields, Ryan C; Randolph, Gwendalyn J; DeNardo, David G | Immunity. | 2017 08 15; | 28813661 | |
| Reversible Reaction-Based Fluorescent Probe for Real-Time Imaging of Glutathione Dynamics in Mitochondria. | Chen, Jianwei; Jiang, Xiqian; Zhang, Chengwei; MacKenzie, Kevin R; Stossi, Fabio; Palzkill, Timothy; Wang, Meng C; Wang, Jin | ACS sensors. | 2017 Sep 22; | 28809477 | |
| AAV-mediated direct in vivo CRISPR screen identifies functional suppressors in glioblastoma. | Chow, Ryan D; Guzman, Christopher D; Wang, Guangchuan; Schmidt, Florian; Youngblood, Mark W; Ye, Lupeng; Errami, Youssef; Dong, Matthew B; Martinez, Michael A; Zhang, Sensen; Renauer, Paul; Bilguvar, Kaya; Gunel, Murat; Sharp, Phillip A; Zhang, Feng; Platt, Randall J; Chen, Sidi | Nature neuroscience. | 2017 Oct; | 28805815 | |
| Sonofragmentation of Ultrathin 1D Nanomaterials. | Gao, Ruixuan; Gupta, Ishan; Boyden, Edward S | Particle & particle systems characterization : measurement and description of particle properties and behavior in powders and other disperse systems. | 2017 Jan; | 28804214 | |
| Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade. | Wei, Spencer C; Levine, Jacob H; Cogdill, Alexandria P; Zhao, Yang; Anang, Nana-Ama A S; Andrews, Miles C; Sharma, Padmanee; Wang, Jing; Wargo, Jennifer A; Pe'er, Dana; Allison, James P | Cell. | 2017 Sep 07; | 28803728 | |
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| Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1. | Yamano, Takashi; Zetsche, Bernd; Ishitani, Ryuichiro; Zhang, Feng; Nishimasu, Hiroshi; Nureki, Osamu | Molecular cell. | 2017 Aug 17; | 28781234 | |
| Electrospun Nanofibers: New Concepts, Materials, and Applications. | Xue, Jiajia; Xie, Jingwei; Liu, Wenying; Xia, Younan | Accounts of chemical research | 2017 08 15 | 28777535 | |
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| A molecular signature for anastasis, recovery from the brink of apoptotic cell death. | Sun, Gongping; Guzman, Elmer; Balasanyan, Varuzhan; Conner, Christopher M; Wong, Kirsten; Zhou, Hongjun Robin; Kosik, Kenneth S; Montell, Denise J | The Journal of cell biology. | 2017 Oct 02; | 28768686 | |
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| Single stranded adeno-associated virus achieves efficient gene transfer to anterior segment in the mouse eye. | Wang, Li; Xiao, Ru; Andres-Mateos, Eva; Vandenberghe, Luk H | PloS one. | 2017; | 28763501 | |
| Ribosome Rescue Inhibitors Kill Actively Growing and Nonreplicating Persister Mycobacterium tuberculosis Cells. | Alumasa, John N; Manzanillo, Paolo S; Peterson, Nicholas D; Lundrigan, Tricia; Baughn, Anthony D; Cox, Jeffery S; Keiler, Kenneth C | ACS infectious diseases. | 2017 Sep 08; | 28762275 | |
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| Critical Comparison of FRET-Sensor Functionality in the Cytosol and Endoplasmic Reticulum and Implications for Quantification of Ions. | Carter, Kyle P; Carpenter, Margaret C; Fiedler, Brett; Jimenez, Ralph; Palmer, Amy E | Analytical chemistry. | 2017 Sep 05; | 28758723 | |
| AID Recognizes Structured DNA for Class Switch Recombination. | Qiao, Qi; Wang, Li; Meng, Fei-Long; Hwang, Joyce K; Alt, Frederick W; Wu, Hao | Molecular cell. | 2017 Aug 03; | 28757211 | |
| Expression and Purification of Active Recombinant Human Alpha-1 Antitrypsin (AAT) from Escherichia coli. | Krishnan, Beena; Hedstrom, Lizbeth; Hebert, Daniel N; Gierasch, Lila M; Gershenson, Anne | Methods in molecular biology (Clifton, N.J.). | 2017; | 28752459 | |
| Targeted DNA methylation in human cells using engineered dCas9-methyltransferases. | Xiong, Tina; Meister, Glenna E; Workman, Rachael E; Kato, Nathaniel C; Spellberg, Michael J; Turker, Fulya; Timp, Winston; Ostermeier, Marc; Novina, Carl D | Scientific reports. | 2017 Jul 27; | 28751638 | |
| ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells. | Ou, Horng D; Phan, Sébastien; Deerinck, Thomas J; Thor, Andrea; Ellisman, Mark H; O'Shea, Clodagh C | Science (New York, N.Y.). | 2017 07 28; | 28751582 | |
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| In Vivo Rescue of the Hematopoietic Niche By Pluripotent Stem Cell Complementation of Defective Osteoblast Compartments. | Chubb, Rhiannon; Oh, James; Riley, Alyssa K; Kimura, Takaharu; Wu, Sean M; Wu, Joy Y | Stem cells (Dayton, Ohio). | 2017 Oct; | 28741855 | |
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| Neural Circuit-Specialized Astrocytes: Transcriptomic, Proteomic, Morphological, and Functional Evidence. | Chai, Hua; Diaz-Castro, Blanca; Shigetomi, Eiji; Monte, Emma; Octeau, J Christopher; Yu, Xinzhu; Cohn, Whitaker; Rajendran, Pradeep S; Vondriska, Thomas M; Whitelegge, Julian P; Coppola, Giovanni; Khakh, Baljit S | Neuron. | 2017 Jul 11; | 28712653 | |
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| Thermoneutrality but not UCP1 Deficiency Suppresses Monocyte Mobilization into Blood. | Williams, Jesse W; Elvington, Andrew F; Ivanov, Stoyan; Kessler, Skyler; Luehmann, Hannah; Baba, Osamu; Saunders, Brian T; Kim, Ki-Wook; Johnson, Michael W; Craft, Clarissa S; Choi, Jae-Hoon; Sorci-Thomas, Mary G; Zinselmeyer, Bernd H; Brestoff, Jonathan | Circulation research. | 2017 Jul 10; | 28696252 | |
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| Structure and Dynamics of RNA Repeat Expansions That Cause Huntington's Disease and Myotonic Dystrophy Type 1. | Chen, Jonathan L; VanEtten, Damian M; Fountain, Matthew A; Yildirim, Ilyas; Disney, Matthew D | Biochemistry. | 2017 07 11; | 28617590 | |
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| Key Features of Structural and Functional Organization of Zebrafish Facial Motor Neurons Are Resilient to Disruption of Neuronal Migration. | McArthur, Kimberly L; Fetcho, Joseph R | Current biology : CB. | 2017 Jun 19; | 28602649 | |
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| YY1 Expression Is Sufficient for the Maintenance of Cardiac Progenitor Cell State. | Gregoire, Serge; Li, Guang; Sturzu, Anthony C; Schwartz, Robert J; Wu, Sean M | Stem cells (Dayton, Ohio). | 2017 08; | 28580685 | |
| Unravelling and Exploiting Astrocyte Dysfunction in Huntington's Disease. | Khakh, Baljit S; Beaumont, Vahri; Cachope, Roger; Munoz-Sanjuan, Ignacio; Goldman, Steven A; Grantyn, Rosemarie | Trends in neurosciences. | 2017 Jul; | 28578789 | |
| Noninvasive Deep Brain Stimulation via Temporally Interfering Electric Fields. | Grossman, Nir; Bono, David; Dedic, Nina; Kodandaramaiah, Suhasa B; Rudenko, Andrii; Suk, Ho-Jun; Cassara, Antonino M; Neufeld, Esra; Kuster, Niels; Tsai, Li-Huei; Pascual-Leone, Alvaro; Boyden, Edward S | Cell. | 2017 Jun 01; | 28575667 | |
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| Fast label-free multilayered histology-like imaging of human breast cancer by photoacoustic microscopy. | Wong, Terence T W; Zhang, Ruiying; Hai, Pengfei; Zhang, Chi; Pleitez, Miguel A; Aft, Rebecca L; Novack, Deborah V; Wang, Lihong V | Science advances. | 2017 May; | 28560329 | |
| The autism-linked UBE3A T485A mutant E3 ubiquitin ligase activates the Wnt/?-catenin pathway by inhibiting the proteasome. | Yi, Jason J; Paranjape, Smita R; Walker, Matthew P; Choudhury, Rajarshi; Wolter, Justin M; Fragola, Giulia; Emanuele, Michael J; Major, Michael B; Zylka, Mark J | The Journal of biological chemistry. | 2017 May 30; | 28559284 | |
| A Series of Suppressive Signals within the Drosophila Circadian Neural Circuit Generates Sequential Daily Outputs. | Liang, Xitong; Holy, Timothy E; Taghert, Paul H | Neuron. | 2017 Jun 21; | 28552314 | |
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| Inference and Evolutionary Analysis of Genome-Scale Regulatory Networks in Large Phylogenies. | Koch, Christopher; Konieczka, Jay; Delorey, Toni; Lyons, Ana; Socha, Amanda; Davis, Kathleen; Knaack, Sara A; Thompson, Dawn; O'Shea, Erin K; Regev, Aviv; Roy, Sushmita | Cell systems. | 2017 May 24; | 28544882 | |
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| An American Crisis: the Lack of Black Men in Medicine. | Laurencin, Cato T; Murray, Marsha | Journal of racial and ethnic health disparities. | 2017 Jun; | 28534304 | |
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| CaMKII Autophosphorylation Is Necessary for Optimal Integration of Ca(2+) Signals during LTP Induction, but Not Maintenance. | Chang, Jui-Yun; Parra-Bueno, Paula; Laviv, Tal; Szatmari, Erzsebet M; Lee, Seok-Jin R; Yasuda, Ryohei | Neuron. | 2017 May 17; | 28521133 | |
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| BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks. | Yan, Winston X; Mirzazadeh, Reza; Garnerone, Silvano; Scott, David; Schneider, Martin W; Kallas, Tomasz; Custodio, Joaquin; Wernersson, Erik; Li, Yinqing; Gao, Linyi; Federova, Yana; Zetsche, Bernd; Zhang, Feng; Bienko, Magda; Crosetto, Nicola | Nature communications. | 2017 May 12; | 28497783 | |
| Whole-brain serial-section electron microscopy in larval zebrafish. | Hildebrand, David Grant Colburn; Cicconet, Marcelo; Torres, Russel Miguel; Choi, Woohyuk; Quan, Tran Minh; Moon, Jungmin; Wetzel, Arthur Willis; Scott Champion, Andrew; Graham, Brett Jesse; Randlett, Owen; Plummer, George Scott; Portugues, Ruben; Bianco, Isaac Henry; Saalfeld, Stephan; Baden, Alexander David; Lillaney, Kunal; Burns, Randal; Vogelstein, Joshua Tzvi; Schier, Alexander Franz; Lee, Wei-Chung Allen; Jeong, Won-Ki; Lichtman, Jeff William; Engert, Florian | Nature. | 2017 05 18; | 28489821 | |
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| Cholesterol Accumulation in Dendritic Cells Links the Inflammasome to Acquired Immunity. | Westerterp, Marit; Gautier, Emmanuel L; Ganda, Anjali; Molusky, Matthew M; Wang, Wei; Fotakis, Panagiotis; Wang, Nan; Randolph, Gwendalyn J; D'Agati, Vivette D; Yvan-Charvet, Laurent; Tall, Alan R | Cell metabolism. | 2017 Jun 06; | 28479366 | |
| Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses. | Lavin, Yonit; Kobayashi, Soma; Leader, Andrew; Amir, El-Ad David; Elefant, Naama; Bigenwald, Camille; Remark, Romain; Sweeney, Robert; Becker, Christian D; Levine, Jacob H; Meinhof, Klaus; Chow, Andrew; Kim-Shulze, Seunghee; Wolf, Andrea; Medaglia, Chiara | Cell. | 2017 May 04; | 28475900 | |
| An Immune Atlas of Clear Cell Renal Cell Carcinoma. | Chevrier, Stéphane; Levine, Jacob Harrison; Zanotelli, Vito Riccardo Tomaso; Silina, Karina; Schulz, Daniel; Bacac, Marina; Ries, Carola Hermine; Ailles, Laurie; Jewett, Michael Alexander Spencer; Moch, Holger; van den Broek, Maries; Beisel, Christian; St | Cell. | 2017 May 04; | 28475899 | |
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| Spatially Adaptive Multi-Scale Optimization for Local Parameter Estimation in Cardiac Electrophysiology. | Dhamala, Jwala; Arevalo, Hermenegild J; Sapp, John; Horacek, Milan; Wu, Katherine C; Trayanova, Natalia A; Wang, Linwei | IEEE transactions on medical imaging. | 2017 09; | 28459685 | |
| CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR-Cas9 nuclease off-targets. | Tsai, Shengdar Q; Nguyen, Nhu T; Malagon-Lopez, Jose; Topkar, Ved V; Aryee, Martin J; Joung, J Keith | Nature methods. | 2017 Jun; | 28459458 | |
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| Human CTP synthase filament structure reveals the active enzyme conformation. | Lynch, Eric M; Hicks, Derrick R; Shepherd, Matthew; Endrizzi, James A; Maker, Allison; Hansen, Jesse M; Barry, Rachael M; Gitai, Zemer; Baldwin, Enoch P; Kollman, Justin M | Nature structural & molecular biology. | 2017 Jun; | 28459447 | |
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| Cell diversity and network dynamics in photosensitive human brain organoids. | Quadrato, Giorgia; Nguyen, Tuan; Macosko, Evan Z; Sherwood, John L; Min Yang, Sung; Berger, Daniel R; Maria, Natalie; Scholvin, Jorg; Goldman, Melissa; Kinney, Justin P; Boyden, Edward S; Lichtman, Jeff W; Williams, Ziv M; McCarroll, Steven A; Arlotta, Paola | Nature. | 2017 May 04; | 28445462 | |
| Microbial metabolites regulate host lipid metabolism through NR5A-Hedgehog signalling. | Lin, Chih-Chun Janet; Wang, Meng C | Nature cell biology. | 2017 May; | 28436966 | |
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| Epithelial-to-Mesenchymal Transition Contributes to Immunosuppression in Breast Carcinomas. | Dongre, Anushka; Rashidian, Mohammad; Reinhardt, Ferenc; Bagnato, Aaron; Keckesova, Zuzana; Ploegh, Hidde L; Weinberg, Robert A | Cancer research. | 2017 Aug 01; | 28428275 | |
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| In Vivo Measurement of Glycine Receptor Turnover and Synaptic Size Reveals Differences between Functional Classes of Motoneurons in Zebrafish. | Chow, Dawnis M; Zuchowski, Kathryn A; Fetcho, Joseph R | Current biology : CB. | 2017 Apr 24; | 28416115 | |
| Blood-Brain Barrier Permeability Is Regulated by Lipid Transport-Dependent Suppression of Caveolae-Mediated Transcytosis. | Andreone, Benjamin J; Chow, Brian Wai; Tata, Aleksandra; Lacoste, Baptiste; Ben-Zvi, Ayal; Bullock, Kevin; Deik, Amy A; Ginty, David D; Clish, Clary B; Gu, Chenghua | Neuron. | 2017 Apr 11; | 28416077 | |
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| Adaptive Chromatin Remodeling Drives Glioblastoma Stem Cell Plasticity and Drug Tolerance. | Liau, Brian B; Sievers, Cem; Donohue, Laura K; Gillespie, Shawn M; Flavahan, William A; Miller, Tyler E; Venteicher, Andrew S; Hebert, Christine H; Carey, Christopher D; Rodig, Scott J; Shareef, Sarah J; Najm, Fadi J; van Galen, Peter; Wakimoto, Hiroaki; Cahill, Daniel P; Rich, Jeremy N; Aster, Jon C; Suvà, Mario L; Patel, Anoop P; Bernstein, Bradley E | Cell stem cell. | 2017 Feb 02; | 27989769 | |
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| Capturing and Manipulating Activated Neuronal Ensembles with CANE Delineates a Hypothalamic Social-Fear Circuit. | Sakurai, Katsuyasu; Zhao, Shengli; Takatoh, Jun; Rodriguez, Erica; Lu, Jinghao; Leavitt, Andrew D; Fu, Min; Han, Bao-Xia; Wang, Fan | Neuron. | 2016 Nov 23; | 27974160 | |
| The Antiviral Mechanism of an Influenza A Virus Nucleoprotein-Specific Single-Domain Antibody Fragment. | Hanke, Leo; Knockenhauer, Kevin E; Brewer, R Camille; van Diest, Eline; Schmidt, Florian I; Schwartz, Thomas U; Ploegh, Hidde L | mBio. | 2016 12 13; | 27965447 | |
| Biochemical Characterization of a Eukaryotic Decalin-Forming Diels-Alderase. | Li, Li; Yu, Peiyuan; Tang, Man-Cheng; Zou, Yi; Gao, Shu-Shan; Hung, Yiu-Sun; Zhao, Muxun; Watanabe, Kenji; Houk, K N; Tang, Yi | Journal of the American Chemical Society. | 2016 Dec 14; | 27960349 | |
| Droplet Microfluidic Flow Cytometer For Sorting On Transient Cellular Responses Of Genetically-Encoded Sensors. | Fiedler, Brett L; Van Buskirk, Steven; Carter, Kyle P; Qin, Yan; Carpenter, Margaret C; Palmer, Amy E; Jimenez, Ralph | Analytical chemistry. | 2017 Jan 03; | 27959493 | |
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| New Transgenic Mouse Lines for Selectively Targeting Astrocytes and Studying Calcium Signals in Astrocyte Processes In Situ and In Vivo. | Srinivasan, Rahul; Lu, Tsai-Yi; Chai, Hua; Xu, Ji; Huang, Ben S; Golshani, Peyman; Coppola, Giovanni; Khakh, Baljit S | Neuron. | 2016 Dec 21; | 27939582 | |
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| Neurodegenerative disorders: Neural synchronization in Alzheimer's disease. | Aron, Liviu; Yankner, Bruce A | Nature. | 2016 12 07; | 27929001 | |
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| Tracking the Activity of mTORC1 in Living Cells Using Genetically Encoded FRET-based Biosensor TORCAR. | Zhou, Xin; Li, Simin; Zhang, Jin | Current protocols in chemical biology. | 2016 Dec 07; | 27925667 | |
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| Cortical Control of Spatial Resolution by VIP+ Interneurons. | Ayzenshtat, Inbal; Karnani, Mahesh Miikael; Jackson, Jesse; Yuste, Rafael | The Journal of neuroscience : the official journal of the Society for Neuroscience. | 2016 Nov 09; | 27911754 | |
| CD98-Mediated Adhesive Signaling Enables the Establishment and Propagation of Acute Myelogenous Leukemia. | Bajaj, Jeevisha; Konuma, Takaaki; Lytle, Nikki K; Kwon, Hyog Young; Ablack, Jailal N; Cantor, Joseph M; Rizzieri, David; Chuah, Charles; Oehler, Vivian G; Broome, Elizabeth H; Ball, Edward D; van der Horst, Edward H; Ginsberg, Mark H; Reya, Tannishtha | Cancer cell. | 2016 Nov 14; | 27908736 | |
| Biomimicry Promotes the Efficiency of a 10-Step Sequential Enzymatic Reaction on Nanoparticles, Converting Glucose to Lactate. | Mukai, Chinatsu; Gao, Lizeng; Nelson, Jacquelyn L; Lata, James P; Cohen, Roy; Wu, Lauren; Hinchman, Meleana M; Bergkvist, Magnus; Sherwood, Robert W; Zhang, Sheng; Travis, Alexander J | Angewandte Chemie (International ed. in English). | 2017 01 02; | 27901298 | |
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| An Unexpected Regulatory Cascade Governs a Core Function of the Drosophila PRC1 Chromatin Protein Su(z)2. | Nguyen, Son C; Yu, Stephanie; Oberlick, Elaine; Wu, Chao-Ting | Genetics. | 2017 Feb; | 27881472 | |
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| Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity. | Ma, Siming; Upneja, Akhil; Galecki, Andrzej; Tsai, Yi-Miau; Burant, Charles F; Raskind, Sasha; Zhang, Quanwei; Zhang, Zhengdong D; Seluanov, Andrei; Gorbunova, Vera; Clish, Clary B; Miller, Richard A; Gladyshev, Vadim N | eLife. | 2016 Nov 22; | 27874830 | |
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| Transcriptomic analysis of instinctive and learned reward-related behaviors in honey bees. | Naeger, Nicholas L; Robinson, Gene E | The Journal of experimental biology. | 2016 11 15; | 27852762 | |
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| From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response. | Naumann, Eva A; Fitzgerald, James E; Dunn, Timothy W; Rihel, Jason; Sompolinsky, Haim; Engert, Florian | Cell. | 2016 Nov 3; | 27814522 | |
| Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. | Seely, Jeffrey S; Kaufman, Matthew T; Ryu, Stephen I; Shenoy, Krishna V; Cunningham, John P; Churchland, Mark M | PLoS computational biology. | 2016 Nov; | 27814353 | |
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