Metabolomics (828)
Publication TitleAuthorsJournalPublication DatePage NoPubMedID
Auditory metabolomics, an approach to identify acute molecular effects of noise trauma.Ji, Lingchao; Lee, Ho-Joon; Wan, Guoqiang; Wang, Guo-Peng; Zhang, Li; Sajjakulnukit, Peter; Schacht, Jochen; Lyssiotis, Costas A; Corfas, GabrielScientific reports.2019 Jun 25;31239523
Oxylipins in triglyceride-rich lipoproteins of dyslipidemic subjects promote endothelial inflammation following a high fat meal.Rajamani, Anita; Borkowski, Kamil; Akre, Samir; Fernandez, Andrea; Newman, John W; Simon, Scott I; Passerini, Anthony GScientific reports.2019 Jun 17;31209255
Glutaminase activity of L-asparaginase contributes to durable preclinical activity against acute lymphoblastic leukemia.Chan, Wai Kin; Horvath, Thomas D; Tan, Lin; Link, Todd; Harutyunyan, Karine G; Pontikos, Michael A; Anishkin, Andriy; Du, Di; Martin, Leona A; Yin, Eric; Rempe, Susan B; Sukharev, Sergei; Konopleva, Marina; Weinstein, John N; Lorenzi, Philip LMolecular cancer therapeutics.2019 Jun 17;31209181
Ablation of adipocyte creatine transport impairs thermogenesis and causes diet-induced obesity.Kazak, Lawrence; Rahbani, Janane F; Samborska, Bozena; Lu, Gina Z; Jedrychowski, Mark P; Lajoie, Mathieu; Zhang, Song; Ramsay, LeeAnn C; Dou, Florence Y; Tenen, Danielle; Chouchani, Edward T; Dzeja, Petras; Watson, Ian R; Tsai, Linus; Rosen, Evan D; Spiegelman, Bruce MNature metabolism.2019;31161155
Time varying causal network reconstruction of a mouse cell cycle.Masnadi-Shirazi, Maryam; Maurya, Mano R; Pao, Gerald; Ke, Eugene; Verma, Inder M; Subramaniam, ShankarBMC bioinformatics.2019 May 29;31142274
Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values.Koelmel, Jeremy P; Cochran, Jason A; Ulmer, Candice Z; Levy, Allison J; Patterson, Rainey E; Olsen, Berkley C; Yost, Richard A; Bowden, John A; Garrett, Timothy JBMC bioinformatics.2019 Apr 29;31035918
Walnuts change lipoprotein composition suppressing TNF?-stimulated cytokine production by diabetic adipocyte.Borkowski, Kamil; Yim, Sun J; Holt, Roberta R; Hackman, Robert M; Keen, Carl L; Newman, John W; Shearer, Gregory CThe Journal of nutritional biochemistry.2019 Jun;31030167
Topological and functional comparison of community detection algorithms in biological networks.Rahiminejad, Sara; Maurya, Mano R; Subramaniam, ShankarBMC bioinformatics.2019 Apr 27;31029085
Dataset of growth cone-enriched lipidome and proteome of embryonic to early postnatal mouse brain.Trzeciecka, Anna; Bhattacharya, Sanjoy KData in brief.2019 Jun;31016214
Metabolomic profiles differ among unique genotypes of a threatened Caribbean coral.Lohr, Kathryn E; Khattri, Ram B; Guingab-Cagmat, Joy; Camp, Emma F; Merritt, Matthew E; Garrett, Timothy J; Patterson, Joshua TScientific reports.2019 Apr 15;30988456
Proposing a validation scheme for 13C metabolite tracer studies in high-resolution mass spectrometry.Schwaiger-Haber, Michaela; Hermann, Gerrit; El Abiead, Yasin; Rampler, Evelyn; Wernisch, Stefanie; Sas, Kelli; Pennathur, Subramaniam; Koellensperger, GundaAnalytical and bioanalytical chemistry.2019 May;30972471
Application of Low-Cost, Easy-to-Use, Portable Biosensor Systems for Diagnosing Bladder Dysfunctions.Myung, Nosang V; Jung, Sungyong; Kim, JayoungInternational neurourology journal.2019 Mar;30943698
Reduced mitochondrial lipid oxidation leads to fat accumulation in myosteatosis.Gumucio, Jonathan P; Qasawa, Austin H; Ferrara, Patrick J; Malik, Afshan N; Funai, Katsuhiko; McDonagh, Brian; Mendias, Christopher LFASEB journal : official publication of the Federation of American Societies for Experimental Biology.2019 Apr 02;30939247
Human metapneumovirus infection of airway epithelial cells is associated with changes in core metabolic pathways.Zhao, Yanhua; Chahar, Harendra Singh; Komaravelli, Narayana; Dossumekova, Anar; Casola, AntonellaVirology.2019 Mar 22;30927711
Enhanced oxidative phosphorylation in NKT cells is essential for their survival and function.Kumar, Ajay; Pyaram, Kalyani; Yarosz, Emily L; Hong, Hanna; Lyssiotis, Costas A; Giri, Shailendra; Chang, Cheong-HeeProceedings of the National Academy of Sciences of the United States of America.2019 Apr 09;30910955
Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurvivors.Evans, Charles R; Karnovsky, Alla; Puskarich, Michael A; Michailidis, George; Jones, Alan E; Stringer, Kathleen AJournal of proteome research.2019 Apr 01;30895797
Broad spectrum metabolomics for detection of abnormal metabolic pathways in a mouse model for retinitis pigmentosa.Weiss, Ellen R; Osawa, Shoji; Xiong, Yubin; Dhungana, Suraj; Carlson, James; McRitchie, Susan; Fennell, Timothy RExperimental eye research.2019 Jul;30885711
Glycolysis Is an Intrinsic Factor for Optimal Replication of a Norovirus.Passalacqua, Karla D; Lu, Jia; Goodfellow, Ian; Kolawole, Abimbola O; Arche, Jacob R; Maddox, Robert J; Carnahan, Kelly E; O'Riordan, Mary X D; Wobus, Christiane EmBio.2019 03 12;30862747
New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis.Mitchell, Joshua M; Flight, Robert M; Wang, Qing Jun; Higashi, Richard M; Fan, Teresa W-M; Lane, Andrew N; Moseley, Hunter N BMetabolomics : Official journal of the Metabolomic Society.2018 Sep 17;30830442
Untargeted metabolomic analysis in non-fasted diabetic dogs by UHPLC-HRMS.O'Kell, A L; Garrett, T J; Wasserfall, C; Atkinson, M AMetabolomics : Official journal of the Metabolomic Society.2019 Jan 22;30830416
NIST lipidomics workflow questionnaire: an assessment of community-wide methodologies and perspectives.Bowden, John A; Ulmer, Candice Z; Jones, Christina M; Koelmel, Jeremy P; Yost, Richard AMetabolomics : Official journal of the Metabolomic Society.2018 03 20;30830346
Macrophage-Released Pyrimidines Inhibit Gemcitabine Therapy in Pancreatic Cancer.Halbrook, Christopher J; Pontious, Corbin; Kovalenko, Ilya; Lapienyte, Laura; Dreyer, Stephan; Lee, Ho-Joon; Thurston, Galloway; Zhang, Yaqing; Lazarus, Jenny; Sajjakulnukit, Peter; Hong, Hanna S; Kremer, Daniel M; Nelson, Barbara S; Kemp, Samantha; ZhangCell metabolism.2019 Jun 04;30827862
Altered metabolite levels and correlations in patients with colorectal cancer and polyps detected using seemingly unrelated regression analysis.Chen, Chen; Gowda, G A Nagana; Zhu, Jiangjiang; Deng, Lingli; Gu, Haiwei; Chiorean, E Gabriela; Zaid, Mohammad Abu; Harrison, Marietta; Zhang, Dabao; Zhang, Min; Raftery, DanielMetabolomics : Official journal of the Metabolomic Society.2017 11;30814918
Identification of bioactive metabolites using activity metabolomics.Rinschen, Markus M; Ivanisevic, Julijana; Giera, Martin; Siuzdak, GaryNature reviews. Molecular cell biology.2019 Feb 27;30814649
Rosiglitazone remodels the lipid droplet and britens human visceral and subcutaneous adipocytes ex vivo.Lee, Mi-Jeong; Jash, Sukanta; Jones, Jessica E C; Puri, Vishwajeet; Fried, Susan KJournal of lipid research.2019 Apr;30782959
Metabolic profiling of a chronic kidney disease cohort reveals metabolic phenotype more likely to benefit from a probiotic.Saggi, Subodh J; Mercier, Kelly; Gooding, Jessica R; Friedman, Eli; Vyas, Usha; Ranganathan, Natarajan; Ranganathan, Pari; McRitchie, Susan; Sumner, SusanInternational journal of probiotics & prebiotics.2017;30774576
IDH1-R132H acts as a tumor suppressor in glioma via epigenetic up-regulation of the DNA damage response.Núñez, Felipe J; Mendez, Flor M; Kadiyala, Padma; Alghamri, Mahmoud S; Savelieff, Masha G; Garcia-Fabiani, Maria B; Haase, Santiago; Koschmann, Carl; Calinescu, Anda-Alexandra; Kamran, Neha; Saxena, Meghna; Patel, Rohin; Carney, Stephen; Guo, Marissa Z; Edwards, Marta; Ljungman, Mats; Qin, Tingting; Sartor, Maureen A; Tagett, Rebecca; Venneti, Sriram; Brosnan-Cashman, Jacqueline; Meeker, Alan; Gorbunova, Vera; Zhao, Lili; Kremer, Daniel M; Zhang, Li; Lyssiotis, Costas A; Jones, Lindsey; Herting, Cameron J; Ross, James L; Hambardzumyan, Dolores; Hervey-Jumper, Shawn; Figueroa, Maria E; Lowenstein, Pedro R; Castro, Maria GScience translational medicine.2019 Feb 13;30760578
ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries.Colby, Sean M; Thomas, Dennis G; Nuñez, Jamie R; Baxter, Douglas J; Glaesemann, Kurt R; Brown, Joseph M; Pirrung, Meg A; Govind, Niranjan; Teeguarden, Justin G; Metz, Thomas O; Renslow, Ryan SAnalytical chemistry.2019 Apr 02;30741529
Metabolic Labeling of Cultured Mammalian Cells for Stable Isotope-Resolved Metabolomics: Practical Aspects of Tissue Culture and Sample Extraction.Crooks, Daniel R; Fan, Teresa W-M; Linehan, W MarstonMethods in molecular biology (Clifton, N.J.).2019;30725447
Mitochondrial fusion supports increased oxidative phosphorylation during cell proliferation.Yao, Cong-Hui; Wang, Rencheng; Wang, Yahui; Kung, Che-Pei; Weber, Jason D; Patti, Gary JeLife.2019 Jan 29;30694178
Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids.DeFelice, Brian C; Fiehn, OliverTalanta.2019 May 01;30683386
Insulin deficiency and intranasal insulin alter brain mitochondrial function: a potential factor for dementia in diabetes.Ruegsegger, Gregory N; Manjunatha, Shankarappa; Summer, Priska; Gopala, Srinivas; Zabeilski, Piotr; Dasari, Surendra; Vanderboom, Patrick M; Lanza, Ian R; Klaus, Katherine A; Nair, K SreekumaranFASEB journal : official publication of the Federation of American Societies for Experimental Biology.2019 Mar;30676773
The mitochondrial retrograde signaling regulates Wnt signaling to promote tumorigenesis in colon cancer.Wen, Yang-An; Xiong, Xiaopeng; Scott, Timothy; Li, Austin T; Wang, Chi; Weiss, Heidi L; Tan, Li; Bradford, Emily; Fan, Teresa W M; Chandel, Navdeep S; Barrett, Terrence A; Gao, TianyanCell death and differentiation.2019 Jan 18;30659235
The impact of early-life sub-therapeutic antibiotic treatment (STAT) on excessive weight is robust despite transfer of intestinal microbes.Schulfer, Anjelique F; Schluter, Jonas; Zhang, Yilong; Brown, Quincy; Pathmasiri, Wimal; McRitchie, Susan; Sumner, Susan; Li, Huilin; Xavier, Joao B; Blaser, Martin JThe ISME journal.2019 May;30651608
Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH.Gallagher, Tara; Phan, Joann; Oliver, Andrew; Chase, Alexander B; England, Whitney E; Wandro, Stephen; Hendrickson, Clark; Riedel, Stefan F; Whiteson, KatrineJournal of bacteriology.2019 Apr 01;30642989
Exosomes Derived from Human Primed Mesenchymal Stem Cells Induce Mitosis and Potentiate Growth Factor Secretion.Yuan, Oliver; Lin, Clayton; Wagner, Joseph; Archard, Joehleen A; Deng, Peter; Halmai, Julian; Bauer, Gerhard; Fink, Kyle D; Fury, Brian; Perotti, Nicholas H; Walker, Jon E; Pollock, Kari; Apperson, Michelle; Butters, Janelle; Belafsky, Peter; Farwell, D Gregory; Kuhn, Maggie; Nolta, Jan; Anderson, Johnathon DStem cells and development.2019 Mar 15;30638129
Innovative technologies for the smart E-Healthcare system.Kim, Wun-Jae; Kim, JayoungInvestigative and clinical urology.2019 Jan;30637354
Kinetic Analysis of Hepatic Metabolism Using Hyperpolarized Dihydroxyacetone.Kirpich, Alexander; Ragavan, Mukundan; Bankson, James A; McIntyre, Lauren M; Merritt, Matthew EJournal of chemical information and modeling.2019 Jan 28;30602117
Metabolomics and 16S rRNA sequencing of human colorectal cancers and adjacent mucosa.Loke, Mun Fai; Chua, Eng Guan; Gan, Han Ming; Thulasi, Kumar; Wanyiri, Jane W; Thevambiga, Iyadorai; Goh, Khean Lee; Wong, Won Fen; Vadivelu, JamunaPloS one.2018;30576312
Transport-exclusion pharmacology to localize lactate dehydrogenase activity within cells.Niu, Xiangfeng; Chen, Ying-Jr; Crawford, Peter A; Patti, Gary JCancer & metabolism.2018;30559963
Dual cationic-anionic profiling of metabolites in a single identified cell in a live Xenopus laevis embryo by microprobe CE-ESI-MS.Portero, Erika P; Nemes, PeterThe Analyst.2019 Jan 28;30542678
Gut microbiome structure and metabolic activity in inflammatory bowel disease.Franzosa, Eric A; Sirota-Madi, Alexandra; Avila-Pacheco, Julian; Fornelos, Nadine; Haiser, Henry J; Reinker, Stefan; Vatanen, Tommi; Hall, A Brantley; Mallick, Himel; McIver, Lauren J; Sauk, Jenny S; Wilson, Robin G; Stevens, Betsy W; Scott, Justin M; Pierce, Kerry; Deik, Amy A; Bullock, Kevin; Imhann, Floris; Porter, Jeffrey A; Zhernakova, Alexandra; Fu, Jingyuan; Weersma, Rinse K; Wijmenga, Cisca; Clish, Clary B; Vlamakis, Hera; Huttenhower, Curtis; Xavier, Ramnik JNature microbiology.2019 Feb;30531976
FoxO Transcription Factors Are Critical Regulators of Diabetes-Related Muscle Atrophy.O'Neill, Brian T; Bhardwaj, Gourav; Penniman, Christie M; Krumpoch, Megan T; Suarez Beltran, Pablo A; Klaus, Katherine; Poro, Kennedy; Li, Mengyao; Pan, Hui; Dreyfuss, Jonathan M; Nair, K Sreekumaran; Kahn, C RonaldDiabetes.2019 Mar;30523026
Effects of Gut Bacteria Depletion and High-Na+ and Low-K+ Intake on Circulating Levels of Biogenic Amines.Bla?enovi?, Ivana; Oh, Young Taek; Li, Fan; Ji, Jian; Nguyen, Ahn-Khoi; Wancewicz, Benjamin; Bender, Jeffrey M; Fiehn, Oliver; Youn, Jang HMolecular nutrition & food research.2019 02;30513547
New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells.Couvillion, Sneha P; Zhu, Ying; Nagy, Gabe; Adkins, Joshua N; Ansong, Charles; Renslow, Ryan S; Piehowski, Paul D; Ibrahim, Yehia M; Kelly, Ryan T; Metz, Thomas OThe Analyst.2018 Dec 03;30507980
Asymmetrical flow field-flow fractionation for improved characterization of human plasma lipoproteins.Bria, Carmen R M; Afshinnia, Farsad; Skelly, Patrick W; Rajendiran, Thekkelnaycke M; Kayampilly, Pradeep; Thomas, Thommey P; Andreev, Victor P; Pennathur, Subramaniam; Kim Ratanathanawongs Williams, SAnalytical and bioanalytical chemistry.2018 Nov 23;30470915
Generation and quality control of lipidomics data for the alzheimer's disease neuroimaging initiative cohort.Barupal, Dinesh Kumar; Fan, Sili; Wancewicz, Benjamin; Cajka, Tomas; Sa, Michael; Showalter, Megan R; Baillie, Rebecca; Tenenbaum, Jessica D; Louie, Gregory; Alzheimer?s Disease Neuroimaging Initiative; Alzheimer?s Disease Metabolomics Consortium; Kaddurah-Daouk, Rima; Fiehn, OliverScientific data.2018 Nov 20;30457571
Hepatocyte-Macrophage Acetoacetate Shuttle Protects against Tissue Fibrosis.Puchalska, Patrycja; Martin, Shannon E; Huang, Xiaojing; Lengfeld, Justin E; Daniel, Bence; Graham, Mark J; Han, Xianlin; Nagy, Laszlo; Patti, Gary J; Crawford, Peter ACell metabolism.2018 Nov 12;30449686
Isotope Tracing Untargeted Metabolomics Reveals Macrophage Polarization-State-Specific Metabolic Coordination across Intracellular Compartments.Puchalska, Patrycja; Huang, Xiaojing; Martin, Shannon E; Han, Xianlin; Patti, Gary J; Crawford, Peter AiScience.2018 Nov 02;30448730
Interplay of Nitric Oxide Synthase (NOS) and SrrAB in Modulation of Staphylococcus aureus Metabolism and Virulence.James, Kimberly L; Mogen, Austin B; Brandwein, Jessica N; Orsini, Silvia S; Ridder, Miranda J; Markiewicz, Mary A; Bose, Jeffrey L; Rice, Kelly CInfection and immunity.2019 Feb;30420450
Epidermal growth factor expression as a predictor of chemotherapeutic resistance in muscle-invasive bladder cancer.Mansour, Ahmed M; Abdelrahim, Mona; Laymon, Mahmoud; Elsherbeeny, Mamdouh; Sultan, Mohammed; Shokeir, Ahmed; Mosbah, Ahmed; Abol-Enein, Hassan; Awadalla, Amira; Cho, Eunho; Sairam, Vikram; Park, Taeeun D; Shahid, Muhammad; Kim, JayoungBMC urology.2018 Nov 09;30413194
Human-like hyperplastic prostate with low ZIP1 induced solely by Zn deficiency in rats.Fong, Louise Y; Jing, Ruiyan; Smalley, Karl J; Wang, Zi-Xuan; Taccioli, Cristian; Fan, Sili; Chen, Hongping; Alder, Hansjuerg; Huebner, Kay; Farber, John L; Fiehn, Oliver; Croce, Carlo MProceedings of the National Academy of Sciences of the United States of America.2018 11 20;30397150
Influence of Experimental Conditions on the Ratio of 25-Hydroxyvitamin D3 Conformers for Validating a Liquid Chromatography/Ion Mobility-Mass Spectrometry Method for Routine Quantitation.Oranzi, Nicholas R; Polfer, Nicolas C; Lei, Jiajun; Yost, Richard AAnalytical chemistry.2018 11 20;30379063
Sebaceous gland abnormalities in fatty acyl CoA reductase 2 (Far2) null mice result in primary cicatricial alopecia.Sundberg, John P; Shen, Tong; Fiehn, Oliver; Rice, Robert H; Silva, Kathleen A; Kennedy, Victoria E; Gott, Nicholas E; Dionne, Louise A; Bechtold, Lesley S; Murray, Stephen A; Kuiper, Raoul; Pratt, C HerbertPloS one.2018;30372477
Biochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors.Holt, Melissa C; Assar, Zahra; Beheshti Zavareh, Reza; Lin, Lin; Anglin, Justin; Mashadova, Oksana; Haldar, Daniel; Mullarky, Edouard; Kremer, Daniel M; Cantley, Lewis C; Kimmelman, Alec C; Stein, Adam J; Lairson, Luke L; Lyssiotis, Costas ABiochemistry.2018 Nov 27;30365304
Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicago spp. Revealed by Metabolomic and Gene Expression Profiles.Gifford, Isaac; Battenberg, Kai; Vaniya, Arpana; Wilson, Alex; Tian, Li; Fiehn, Oliver; Berry, Alison MFrontiers in plant science.2018;30364174
Stable Isotope-Resolved Metabolomic Differences between Hormone-Responsive and Triple-Negative Breast Cancer Cell Lines.Winnike, Jason H; Stewart, Delisha A; Pathmasiri, Wimal W; McRitchie, Susan L; Sumner, Susan JInternational journal of breast cancer.2018;30363973
Mitochondrial ATP synthase ?-subunit production rate and ATP synthase specific activity are reduced in skeletal muscle of humans with obesity.Tran, Lee; Langlais, Paul R; Hoffman, Nyssa; Roust, Lori; Katsanos, Christos SExperimental physiology.2019 Jan;30362197
Gut Microbial Product Predicts Cardiovascular Risk in Chronic Kidney Disease Patients.Jadoon, Adil; Mathew, Anna V; Byun, Jaeman; Gadegbeku, Crystal A; Gipson, Debbie S; Afshinnia, Farsad; Pennathur, Subramaniam; for the Michigan Kidney Translational Core CPROBE Investigator GroupAmerican journal of nephrology.2018;30326477
A joint analysis of metabolomic profiles associated with muscle mass and strength in Caucasian women.Zhao, Qi; Shen, Hui; Su, Kuan-Jui; Tian, Qing; Zhao, Lan-Juan; Qiu, Chuan; Garrett, Timothy J; Liu, Jiawang; Kakhniashvili, David; Deng, Hong-WenAging.2018 Oct 14;30318485
A Protocol to Compare Methods for Untargeted Metabolomics.Wang, Lingjue; Naser, Fuad J; Spalding, Jonathan L; Patti, Gary JMethods in molecular biology (Clifton, N.J.).2019;30315456
Multi-omics Approach Reveals Metabolic Changes in the Heart at Birth.Walejko, Jacquelyn M; Koelmel, Jeremy P; Garrett, Timothy J; Edison, Arthur S; Keller-Wood, MaureenAmerican journal of physiology. Endocrinology and metabolism.2018 Oct 09;30300011
Metabolomic profiles and development of metabolic risk during the pubertal transition: a prospective study in the ELEMENT Project.Perng, Wei; Tang, Lu; Song, Peter X K; Tellez-Rojo, Martha Maria; Cantoral, Alejandra; Peterson, Karen EPediatric research.2018 Oct 03;30297880
Optimization of Folch, Bligh-Dyer, and Matyash sample-to-extraction solvent ratios for human plasma-based lipidomics studies.Ulmer, Candice Z; Jones, Christina M; Yost, Richard A; Garrett, Timothy J; Bowden, John AAnalytica chimica acta.2018 Dec 11;30292311
Exosomal lipids for classifying early and late stage non-small cell lung cancer.Fan, Teresa W M; Zhang, Xiaofei; Wang, Chi; Yang, Ye; Kang, Woo-Young; Arnold, Susanne; Higashi, Richard M; Liu, Jinze; Lane, Andrew NAnalytica chimica acta.2018 Dec 11;30292300
Quantitative Proteomic Analysis Reveals Caffeine-Perturbed Proteomic Profiles in Normal Bladder Epithelial Cells.Shahid, Muhammad; Kim, Minhyung; Yeon, Austin; Andres, Allen M; You, Sungyong; Kim, JayoungProteomics.2018 Oct;30232827
Rewiring of cisplatin-resistant bladder cancer cells through epigenetic regulation of genes involved in amino acid metabolism.Yeon, Austin; You, Sungyong; Kim, Minhyung; Gupta, Amit; Park, Myung Hee; Weisenberger, Daniel J; Liang, Gangning; Kim, JayoungTheranostics.;30214636
Glutathione de novo synthesis but not recycling process coordinates with glutamine catabolism to control redox homeostasis and directs murine T cell differentiation.Lian, Gaojian; Gnanaprakasam, Jn Rashida; Wang, Tingting; Wu, Ruohan; Chen, Xuyong; Liu, Lingling; Shen, Yuqing; Yang, Mao; Yang, Jun; Chen, Ying; Vasiliou, Vasilis; Cassel, Teresa A; Green, Douglas R; Liu, Yusen; Fan, Teresa Wm; Wang, RuoningeLife.2018 09 10;30198844
Plasma metabolomics analysis in sickle cell disease patients with albuminuria - an exploratory study.Elsherif, Laila; Pathmasiri, Wimal; McRitchie, Susan; Archer, David R; Ataga, Kenneth IBritish journal of haematology.2019 May;30198565
Glycolytic Stimulation Is Not a Requirement for M2 Macrophage Differentiation.Wang, Feilong; Zhang, Song; Vuckovic, Ivan; Jeon, Ryounghoon; Lerman, Amir; Folmes, Clifford D; Dzeja, Petras P; Herrmann, JoergCell metabolism.2018 09 04;30184486
Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function.Lam, Wing Y; Jash, Arijita; Yao, Cong-Hui; D'Souza, Lucas; Wong, Rachel; Nunley, Ryan M; Meares, Gordon P; Patti, Gary J; Bhattacharya, DeeptaCell reports.2018 Aug 28;30157439
Integrated proteomic and phosphoproteomic analyses of cisplatin-sensitive and resistant bladder cancer cells reveal CDK2 network as a key therapeutic target.Jung, Jae Hun; You, Sungyong; Oh, Jae Won; Yoon, Junhee; Yeon, Austin; Shahid, Muhammad; Cho, Eunho; Sairam, Vikram; Park, Taeeun D; Kim, Kwang Pyo; Kim, JayoungCancer letters.2018 Nov 28;30145203
StAR-related lipid transfer domain 11 (STARD11)-mediated ceramide transport mediates extracellular vesicle biogenesis.Fukushima, Masanori; Dasgupta, Debanjali; Mauer, Amy S; Kakazu, Eiji; Nakao, Kazuhiko; Malhi, HarmeetThe Journal of biological chemistry.2018 Sep 28;30139741
MeCP2 isoform e1 mutant mice recapitulate motor and metabolic phenotypes of Rett syndrome.Vogel Ciernia, Annie; Yasui, Dag H; Pride, Michael C; Durbin-Johnson, Blythe; Noronha, Adriana B; Chang, Alene; Knotts, Trina A; Rutkowsky, Jennifer R; Ramsey, Jon J; Crawley, Jacqueline N; LaSalle, Janine MHuman molecular genetics.2018 12 01;30137367
Metabolomic profiles associated with bone mineral density in US Caucasian women.Zhao, Qi; Shen, Hui; Su, Kuan-Jui; Zhang, Ji-Gang; Tian, Qing; Zhao, Lan-Juan; Qiu, Chuan; Zhang, Qiang; Garrett, Timothy J; Liu, Jiawang; Deng, Hong-WenNutrition & metabolism.2018;30116286
Era of the Fourth Industrial Revolution and the Urologists' Journey to Navigating Big Omics Data.Kim, JayoungInternational neurourology journal.2018 Jul;30068072
Gut microbiota and serum metabolite differences in African Americans and White Americans with high blood pressure.Walejko, Jacquelyn M; Kim, Seungbum; Goel, Ruby; Handberg, Eileen M; Richards, Elaine M; Pepine, Carl J; Raizada, Mohan KInternational journal of cardiology.2018 Jul 23;30049487
Cation-Dependent Conformations in 25-Hydroxyvitamin D3-Cation Adducts Measured by Ion Mobility-Mass Spectrometry and Theoretical Modeling.Chouinard, Christopher D; Cruzeiro, Vinicius Wilian D; Kemperman, Robin H J; Oranzi, Nicholas R; Roitberg, Adrian E; Yost, Richard AInternational journal of mass spectrometry.2018 Sep;30034270
Noninvasive profiling of sweat-derived lipid mediators for cutaneous research.Agrawal, Karan; Sivamani, Raja K; Newman, John WSkin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI).2018 Jul 21;30030941
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism.Zarrinpar, Amir; Chaix, Amandine; Xu, Zhenjiang Z; Chang, Max W; Marotz, Clarisse A; Saghatelian, Alan; Knight, Rob; Panda, SatchidanandaNature communications.2018 Jul 20;30030441
Menthol, a unique urinary volatile compound, is associated with chronic inflammation in interstitial cystitis.Shahid, Muhammad; Lee, Min Young; Yeon, Austin; Cho, Eunho; Sairam, Vikram; Valdiviez, Luis; You, Sungyong; Kim, JayoungScientific reports.2018 Jul 18;30022124
Use of principle component analysis to quantitatively score the equine metabolic syndrome phenotype in an Arabian horse population.Lewis, Samantha L; Holl, Heather M; Long, Maureen T; Mallicote, Martha F; Brooks, Samantha APloS one.2018;30001422
Down-regulation of transient receptor potential melastatin member 7 prevents migration and invasion of renal cell carcinoma cells via inactivation of the Src and Akt pathway.Ha, Yun-Sok; Kim, Yeon-Yong; Yu, Na Hee; Chun, So Young; Choi, Seock Hwan; Lee, Jun Nyung; Kim, Bum Soo; Yoo, Eun Sang; Kwon, Tae GyunInvestigative and clinical urology.2018 Jul;29984342
Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics.Nagy-Szakal, Dorottya; Barupal, Dinesh K; Lee, Bohyun; Che, Xiaoyu; Williams, Brent L; Kahn, Ellie J R; Ukaigwe, Joy E; Bateman, Lucinda; Klimas, Nancy G; Komaroff, Anthony L; Levine, Susan; Montoya, Jose G; Peterson, Daniel L; Levin, Bruce; Hornig, Mady; Fiehn, Oliver; Lipkin, W IanScientific reports.2018 Jul 03;29968805
Elevated Nicotinamide Phosphoribosyl Transferase in Skeletal Muscle Augments Exercise Performance and Mitochondrial Respiratory Capacity Following Exercise Training.Brouwers, Bram; Stephens, Natalie A; Costford, Sheila R; Hopf, Meghan E; Ayala, Julio E; Yi, Fanchao; Xie, Hui; Li, Jian-Liang; Gardell, Stephen J; Sparks, Lauren M; Smith, Steven RFrontiers in physiology.2018;29942262
GLP-2 receptor signaling controls circulating bile acid levels but not glucose homeostasis in Gcgr-/- mice and is dispensable for the metabolic benefits ensuing after vertical sleeve gastrectomy.Patel, Anita; Yusta, Bernardo; Matthews, Dianne; Charron, Maureen J; Seeley, Randy J; Drucker, Daniel JMolecular metabolism.;29937214
Oleocanthal-rich extra virgin olive oil demonstrates acute anti-platelet effects in healthy men in a randomized trial.Agrawal, Karan; Melliou, Eleni; Li, Xueqi; Pedersen, Theresa L; Wang, Selina C; Magiatis, Prokopios; Newman, John W; Holt, Roberta RJournal of functional foods.;29904393
Lower Fasted-State but Greater Increase in Muscle Protein Synthesis in Response to Elevated Plasma Amino Acids in Obesity.Tran, Lee; Kras, Katon A; Hoffman, Nyssa; Ravichandran, Jayachandran; Dickinson, Jared M; D'Lugos, Andrew; Carroll, Chad C; Patel, Shivam H; Mandarino, Lawrence J; Roust, Lori; Katsanos, Christos SObesity (Silver Spring, Md.).2018 Jul;29896930
Chromatin Succinylation Correlates with Active Gene Expression and Is Perturbed by Defective TCA Cycle Metabolism.Smestad, John; Erber, Luke; Chen, Yue; Maher 3rd, L JamesiScience.2018 Apr 27;29888767
Effects of atopic dermatitis and gender on sebum lipid mediator and fatty acid profiles.Agrawal, Karan; Hassoun, Lauren A; Foolad, Negar; Borkowski, Kamil; Pedersen, Theresa L; Sivamani, Raja K; Newman, John WProstaglandins, leukotrienes, and essential fatty acids.2018 07;29886894
The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis.Wandro, Stephen; Osborne, Stephanie; Enriquez, Claudia; Bixby, Christine; Arrieta, Antonio; Whiteson, KatrinemSphere.2018 Jun 27;29875143
Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer.Zaytseva, Yekaterina Y; Rychahou, Piotr G; Le, Anh-Thu; Scott, Timothy L; Flight, Robert M; Kim, Ji Tae; Harris, Jennifer; Liu, Jinpeng; Wang, Chi; Morris, Andrew J; Sivakumaran, Theru A; Fan, Teresa; Moseley, Hunter; Gao, Tianyan; Lee, Eun Y; Weiss, Heidi L; Heuer, Timothy S; Kemble, George; Evers, MarkOncotarget.2018 May 15;29872506
Cancer in the crosshairs: targeting cancer metabolism with hyperpolarized carbon-13 MRI technology.von Morze, Cornelius; Merritt, Matthew ENMR in biomedicine.2018 Jun 05;29870085
Celecoxib Does Not Protect against Fibrosis and Inflammation in a Carbon Tetrachloride-Induced Model of Liver Injury.Harris, Todd R; Kodani, Sean; Rand, Amy A; Yang, Jun; Imai, Denise M; Hwang, Sung Hee; Hammock, Bruce DMolecular pharmacology.;29844231
Male lifespan extension with 17-? estradiol is linked to a sex-specific metabolomic response modulated by gonadal hormones in mice.Garratt, Michael; Lagerborg, Kim A; Tsai, Yi-Miau; Galecki, Andrzej; Jain, Mohit; Miller, Richard AAging cell.2018 May 27;29806096
Oral ibuprofen differentially affects plasma and sweat lipid mediator profiles in healthy adult males.Agrawal, Karan; Bosviel, Rémy; Piccolo, Brian D; Newman, John WProstaglandins & other lipid mediators.2018 May 17;29778785
An inhibitor of soluble epoxide hydrolase ameliorates diabetes-induced learning and memory impairment in rats.Minaz, Nathani; Razdan, Rema; Hammock, Bruce D; Goswami, Sumanta KumarProstaglandins & other lipid mediators.2018 05;29751149
A novel inhibitor of pyruvate dehydrogenase kinase stimulates myocardial carbohydrate oxidation in diet-induced obesity.Wu, Cheng-Yang; Satapati, Santhosh; Gui, Wenjun; Wynn, R Max; Sharma, Gaurav; Lou, Mingliang; Qi, Xiangbing; Burgess, Shawn C; Malloy, Craig; Khemtong, Chalermchai; Sherry, A Dean; Chuang, David T; Merritt, Matthew EThe Journal of biological chemistry.;29739849
Pharmacometabolomic signature links simvastatin therapy and insulin resistance.Elbadawi-Sidhu, Mona; Baillie, Rebecca A; Zhu, Hongjie; Chen, Yii-Der Ida; Goodarzi, Mark O; Rotter, Jerome I; Krauss, Ronald M; Fiehn, Oliver; Kaddurah-Daouk, RimaMetabolomics : open access.2017 Jan;29732238
Atypical Antipsychotic Exposure May Not Differentiate Metabolic Phenotypes of Patients with Schizophrenia.Ward, Kristen M; Yeoman, Larisa; McHugh, Cora; Kraal, A Zarina; Flowers, Stephanie A; Rothberg, Amy E; Karnovsky, Alla; Das, Arun K; Ellingrod, Vicki L; Stringer, Kathleen APharmacotherapy.2018 Jun;29722909
Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer.Hale, Vanessa L; Jeraldo, Patricio; Mundy, Michael; Yao, Janet; Keeney, Gary; Scott, Nancy; Cheek, E Heidi; Davidson, Jennifer; Green, Megan; Martinez, Christine; Lehman, John; Pettry, Chandra; Reed, Erica; Lyke, Kelly; White, Bryan A; Diener, Christian; Resendis-Antonio, Osbaldo; Gransee, Jaime; Dutta, Tumpa; Petterson, Xuan-Mai; Boardman, Lisa; Larson, David; Nelson, Heidi; Chia, NicholasMethods (San Diego, Calif.).2018 Oct 01;29704665
Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites.Gao, Bei; Gallagher, Tara; Zhang, Ying; Elbadawi-Sidhu, Mona; Lai, Zijuan; Fiehn, Oliver; Whiteson, Katrine LmSphere.2018 Apr 25;29695623
SECIMTools: a suite of metabolomics data analysis tools.Kirpich, Alexander S; Ibarra, Miguel; Moskalenko, Oleksandr; Fear, Justin M; Gerken, Joseph; Mi, Xinlei; Ashrafi, Ali; Morse, Alison M; McIntyre, Lauren MBMC bioinformatics.2018 Apr 20;29678131
Menin regulates the serine biosynthetic pathway in Ewing sarcoma.Svoboda, Laurie K; Teh, Selina Shiqing K; Sud, Sudha; Kerk, Samuel; Zebolsky, Aaron; Treichel, Sydney; Thomas, Dafydd; Halbrook, Christopher J; Lee, Ho-Joon; Kremer, Daniel; Zhang, Li; Klossowski, Szymon; Bankhead, Armand R; Magnuson, Brian; Ljungman, Mats; Cierpicki, Tomasz; Grembecka, Jolanta; Lyssiotis, Costas A; Lawlor, Elizabeth RThe Journal of pathology.2018 Jul;29672864
Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue.Sun, Xuezheng; Stewart, Delisha A; Sandhu, Rupninder; Kirk, Erin L; Pathmasiri, Wimal W; McRitchie, Susan L; Clark, Robert F; Troester, Melissa A; Sumner, Susan JPloS one.2018;29668675
Diversity of Neuropeptide Cell-Cell Signaling Molecules Generated by Proteolytic Processing Revealed by Neuropeptidomics Mass Spectrometry.Hook, Vivian; Lietz, Christopher B; Podvin, Sonia; Cajka, Tomas; Fiehn, OliverJournal of the American Society for Mass Spectrometry.2018 May;29667161
Restoration of short chain fatty acid and bile acid metabolism following fecal microbiota transplantation in patients with recurrent Clostridium difficile infection.Seekatz, Anna M; Theriot, Casey M; Rao, Krishna; Chang, Yu-Ming; Freeman, Alison E; Kao, John Y; Young, Vincent BAnaerobe.2018 Apr 12;29654837
Associations of the plasma lipidome with mortality in the acute respiratory distress syndrome: a longitudinal cohort study.Maile, Michael D; Standiford, Theodore J; Engoren, Milo C; Stringer, Kathleen A; Jewell, Elizabeth S; Rajendiran, Thekkelnaycke M; Soni, Tanu; Burant, Charles FRespiratory research.2018 Apr 10;29636049
Pioglitazone improves hepatic mitochondrial function in a mouse model of nonalcoholic steatohepatitis.Kalavalapalli, Srilaxmi; Bril, Fernando; Koelmel, Jeremy P; Abdo, Kaitlyn; Guingab, Joy; Andrews, Paige; Li, Wen-Yi; Jose, Dhanya; Yost, Richard A; Frye, Reginald F; Garrett, Timothy J; Cusi, Kenneth; Sunny, Nishanth EAmerican journal of physiology. Endocrinology and metabolism.2018 08 01;29634314
Lower Concentrations of Circulating Medium and Long-Chain Acylcarnitines Characterize Insulin Resistance in Persons with HIV.Bailin, Samuel S; Jenkins, Cathy A; Petucci, Christopher; Culver, Jeffrey A; Shepherd, Bryan E; Fessel, Joshua P; Hulgan, Todd; Koethe, John RAIDS research and human retroviruses.2018 06;29607651
Shifts in the Gut Metabolome and Clostridium difficile Transcriptome throughout Colonization and Infection in a Mouse Model.Fletcher, Joshua R; Erwin, Samantha; Lanzas, Cristina; Theriot, Casey MmSphere.2018 Mar-Apr;29600278
Development of an Ex-Situ Limb Perfusion System for a Rodent Model.Gok, Emre; Alghanem, Fares; Moon, Ruth; Guy, Erin; Rojas-Pena, Alvaro; Bartlett, Robert H; Ozer, KaganASAIO journal (American Society for Artificial Internal Organs : 1992).2018 Mar 26;29595532
Innovations in asthma therapy: is there a role for inhaled statins?Zeki, Amir A; Elbadawi-Sidhu, MonaExpert review of respiratory medicine.2018 Jun;29575963
A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry.Zheng, Xueyun; Aly, Noor A; Zhou, Yuxuan; Dupuis, Kevin T; Bilbao, Aivett; Paurus, Vanessa L; Orton, Daniel J; Wilson, Ryan; Payne, Samuel H; Smith, Richard D; Baker, Erin SChemical science.2017 Nov 01;29568436
Beyond Structure: Defining the Function of the Gut Using Omic Approaches for Rational Design of Personalized Therapeutics.Theriot, Casey MmSystems.2018 Mar-Apr;29556548
Urinary Metabolites Associated with Blood Pressure on a Low- or High-Sodium Diet.Cheng, Yuan; Song, Haiying; Pan, Xiaoqing; Xue, Hong; Wan, Yifei; Wang, Tao; Tian, Zhongmin; Hou, Entai; Lanza, Ian R; Liu, Pengyuan; Liu, Yong; Laud, Purushottam W; Usa, Kristie; He, Yongcheng; Liang, MingyuTheranostics.2018;29556335
Patatin-like phospholipase domain-containing protein 3 promotes transfers of essential fatty acids from triglycerides to phospholipids in hepatic lipid droplets.Mitsche, Matthew A; Hobbs, Helen H; Cohen, Jonathan CThe Journal of biological chemistry.2018 May 04;29555681
Alpha-oxoglutarate inhibits the proliferation of immortalized normal bladder epithelial cells via an epigenetic switch involving ARID1A.Shahid, Muhammad; Gull, Nicole; Yeon, Austin; Cho, Eunho; Bae, Jooeun; Yoon, Hyun Seok; You, Sungyong; Yoon, Hana; Kim, Minjung; Berman, Benjamin P; Kim, JayoungScientific reports.2018 Mar 14;29540744
Probing the application range and selectivity of a differential mobility spectrometry-mass spectrometry platform for metabolomics.Wernisch, Stefanie; Afshinnia, Farsad; Rajendiran, Thekkelnaycke; Pennathur, SubramaniamAnalytical and bioanalytical chemistry.2018 May;29532192
Lower plasma choline levels are associated with sleepiness symptoms.Pak, Victoria M; Dai, Feng; Keenan, Brendan T; Gooneratne, Nalaka S; Pack, Allan ISleep medicine.2018 Apr;29530375
The aryl hydrocarbon receptor as a moderator of host-microbiota communication.Zhang, Limin; Nichols, Robert G; Patterson, Andrew DCurrent opinion in toxicology.2017 Feb;29527582
Acute loss of iron-sulfur clusters results in metabolic reprogramming and generation of lipid droplets in mammalian cells.Crooks, Daniel R; Maio, Nunziata; Lane, Andrew N; Jarnik, Michal; Higashi, Richard M; Haller, Ronald G; Yang, Ye; Fan, Teresa W-M; Linehan, W Marston; Rouault, Tracey AThe Journal of biological chemistry.;29523684
Blueberry Supplementation Influences the Gut Microbiota, Inflammation, and Insulin Resistance in High-Fat-Diet-Fed Rats.Lee, Sunhye; Keirsey, Katherine I; Kirkland, Rebecca; Grunewald, Zachary I; Fischer, Joan G; de La Serre, Claire BThe Journal of nutrition.2018 02 01;29490092
In vivo hyperpolarization transfer in a clinical MRI scanner.von Morze, Cornelius; Reed, Galen D; Larson, Peder E; Mammoli, Daniele; Chen, Albert P; Tropp, James; Van Criekinge, Mark; Ohliger, Michael A; Kurhanewicz, John; Vigneron, Daniel B; Merritt, Matthew EMagnetic resonance in medicine.2018 08;29488244
RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites.Zhang, Bofei; Hu, Senyang; Baskin, Elizabeth; Patt, Andrew; Siddiqui, Jalal K; Mathé, Ewy AMetabolites.2018 Feb 22;29470400
Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma.Smestad, John; Hamidi, Oksana; Wang, Lin; Holte, Molly Nelson; Khazal, Fatimah Al; Erber, Luke; Chen, Yue; Maher 3rd, L JamesOncotarget.2018 Jan 19;29464059
Lipid metabolism and lipophagy in cancer.Maan, Meenu; Peters, Jeffrey M; Dutta, Mainak; Patterson, Andrew DBiochemical and biophysical research communications.2018 Feb 10;29438712
The Effects of Glaucoma Drainage Devices on Oxygen Tension, Glycolytic Metabolites, and Metabolomics Profile of Aqueous Humor in the Rabbit.Williamson, Blake K; Hawkey, Nathan M; Blake, Diane A; Frenkel, Joshua W; McDaniel, Kevin P; Davis, Justin K; Satija, Celine; Beazer, Alex; Dhungana, Suraj; Carlson, James; McRitchie, Susan; Ayyala, Ramesh STranslational vision science & technology.2018 Feb;29423340
First and second trimester urinary metabolic profiles and fetal growth restriction: an exploratory nested case-control study within the infant development and environment study.Luthra, Gauri; Vuckovic, Ivan; Bangdiwala, A; Gray, H; Redmon, J B; Barrett, E S; Sathyanarayana, S; Nguyen, R H N; Swan, S H; Zhang, S; Dzeja, P; Macura, S I; Nair, K SBMC pregnancy and childbirth.2018 02 08;29422013
Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets.Barupal, Dinesh Kumar; Fan, Sili; Fiehn, OliverCurrent opinion in biotechnology.2018 12;29413745
Abnormal lipoprotein oxylipins in metabolic syndrome and partial correction by omega-3 fatty acids.Shearer, Gregory C; Borkowski, Kamil; Puumala, Susan L; Harris, William S; Pedersen, Theresa L; Newman, John WProstaglandins, leukotrienes, and essential fatty acids.2018 01;29413356
Probing cardiac metabolism by hyperpolarized 13C MR using an exclusively endogenous substrate mixture and photo-induced nonpersistent radicals.Bastiaansen, Jessica A M; Yoshihara, Hikari A I; Capozzi, Andrea; Schwitter, Juerg; Gruetter, Rolf; Merritt, Matthew E; Comment, ArnaudMagnetic resonance in medicine.2018 05;29411415
A role for long-chain acyl-CoA synthetase-4 (ACSL4) in diet-induced phospholipid remodeling and obesity-associated adipocyte dysfunction.Killion, Elizabeth A; Reeves, Andrew R; El Azzouny, Mahmoud A; Yan, Qing-Wu; Surujon, Defne; Griffin, John D; Bowman, Thomas A; Wang, Chunyan; Matthan, Nirupa R; Klett, Eric L; Kong, Dong; Newman, John W; Han, Xianlin; Lee, Mi-Jeong; Coleman, Rosalind A; Greenberg, Andrew SMolecular metabolism.2018 Mar;29398618
Using Metabolomics to Investigate Biomarkers of Drug Addiction.Ghanbari, Reza; Sumner, SusanTrends in molecular medicine.2018 02;29397321
Septic Shock Nonsurvivors Have Persistently Elevated Acylcarnitines Following Carnitine Supplementation.Puskarich, Michael A; Evans, Charles R; Karnovsky, Alla; Das, Arun K; Jones, Alan E; Stringer, Kathleen AShock (Augusta, Ga.).2018 Apr;29384504
l-Carnitine Inhibits Lipopolysaccharide-Induced Nitric Oxide Production of SIM-A9 Microglia Cells.Gill, Emily L; Raman, Shreya; Yost, Richard A; Garrett, Timothy J; Vedam-Mai, VinataACS chemical neuroscience.2018 05 16;29370524
Mutant p53R270H drives altered metabolism and increased invasion in pancreatic ductal adenocarcinoma.Schofield, Heather K; Zeller, Jörg; Espinoza, Carlos; Halbrook, Christopher J; Del Vecchio, Annachiara; Magnuson, Brian; Fabo, Tania; Daylan, Ayse Ece Cali; Kovalenko, Ilya; Lee, Ho-Joon; Yan, Wei; Feng, Ying; Karim, Saadia A; Kremer, Daniel M; Kumar-Sinha, Chandan; Lyssiotis, Costas A; Ljungman, Mats; Morton, Jennifer P; Galbán, Stefanie; Fearon, Eric R; Pasca di Magliano, MarinaJCI insight.2018 Jan 25;29367463
Establishing and Performing Targeted Multi-residue Analysis for Lipid Mediators and Fatty Acids in Small Clinical Plasma Samples.Pedersen, Theresa L; Newman, John WMethods in molecular biology (Clifton, N.J.).2018;29363074
Portable FAIMS: Applications and Future Perspectives.Costanzo, Michael T; Boock, Jared J; Kemperman, Robin H J; Wei, Michael S; Beekman, Christopher R; Yost, Richard AInternational journal of mass spectrometry.2017 Nov;29335669
Glutamine-derived 2-hydroxyglutarate is associated with disease progression in plasma cell malignancies.Gonsalves, Wilson I; Ramakrishnan, Vijay; Hitosugi, Taro; Ghosh, Toshi; Jevremovic, Dragan; Dutta, Tumpa; Sakrikar, Dhananjay; Petterson, Xuan-Mai; Wellik, Linda; Kumar, Shaji K; Nair, K SreekumaranJCI insight.2018 Jan 11;29321378
Human microbiota, blood group antigens, and disease.Ewald, D Rose; Sumner, Susan C JWiley interdisciplinary reviews. Systems biology and medicine.2018 Jan 09;29316320
Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids.Schwertz, Hansjörg; Rowley, Jesse W; Schumann, Gerald G; Thorack, Ulrike; Campbell, Robert A; Manne, Bhanu Kanth; Zimmerman, Guy A; Weyrich, Andrew S; Rondina, Matthew TArteriosclerosis, thrombosis, and vascular biology.2018 Jan 04;29301786
Microprobe Capillary Electrophoresis Mass Spectrometry for Single-cell Metabolomics in Live Frog (Xenopus laevis) Embryos.Onjiko, Rosemary M; Portero, Erika P; Moody, Sally A; Nemes, PeterJournal of visualized experiments : JoVE.2017 Dec 22;29286491
SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids.Zhang, Xing; Romm, Michelle; Zheng, Xueyun; Zink, Erika M; Kim, Young-Mo; Burnum-Johnson, Kristin E; Orton, Daniel J; Apffel, Alex; Ibrahim, Yehia M; Monroe, Matthew E; Moore, Ronald J; Smith, Jordan N; Ma, Jian; Renslow, Ryan S; Thomas, Dennis G; Blackwell, Anne E; Swinford, Glenn; Sausen, John; Kurulugama, Ruwan T; Eno, Nathan; Darland, Ed; Stafford, George; Fjeldsted, John; Metz, Thomas O; Teeguarden, Justin G; Smith, Richard D; Baker, Erin SClinical mass spectrometry (Del Mar, Calif.).2016 Dec;29276770
Pilot Study of Metabolomics and Psychoneurological Symptoms in Women With Early Stage Breast Cancer.Lyon, Debra E; Starkweather, Angela; Yao, Yingwei; Garrett, Timothy; Kelly, Debra Lynch; Menzies, Victoria; Derezi?ski, Pawe?; Datta, Susmita; Kumar, Sreelakshmy; Jackson-Cook, ColleenBiological research for nursing.2018 Mar;29258398
Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection.Chen, Poyin; Reiter, Taylor; Huang, Bihua; Kong, Nguyet; Weimer, Bart CPathogens (Basel, Switzerland).2017 Dec 19;29257110
Two complementary reversed-phase separations for comprehensive coverage of the semipolar and nonpolar metabolome.Naser, Fuad J; Mahieu, Nathaniel G; Wang, Lingjue; Spalding, Jonathan L; Johnson, Stephen L; Patti, Gary JAnalytical and bioanalytical chemistry.2018 Feb;29256075
The effect of Ho3+ doping on 13C dynamic nuclear polarization at 5 T.Sirusi, Ali A; Suh, Eul Hyun; Kovacs, Zoltan; Merritt, Matthew EPhysical chemistry chemical physics : PCCP.2018 Jan 03;29242884
Shared and distinct lipid-lipid interactions in plasma and affected tissues in a diabetic mouse model.Sas, Kelli M; Lin, Jiahe; Rajendiran, Thekkelnaycke M; Soni, Tanu; Nair, Viji; Hinder, Lucy M; Jagadish, Hosagrahar V; Gardner, Thomas W; Abcouwer, Steven F; Brosius 3rd, Frank C; Feldman, Eva L; Kretzler, Matthias; Michailidis, George; Pennathur, SubramaJournal of lipid research.2018 Feb;29237716
Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry.Kind, Tobias; Fiehn, OliverPhytochemistry letters.2017 Sep;29225718
Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches.Zheng, Xueyun; Smith, Richard D; Baker, Erin SCurrent opinion in chemical biology.2017 Dec 06;29223060
Application of Large-Scale Aptamer-Based Proteomic Profiling to Planned Myocardial Infarctions.Jacob, Jaison; Ngo, Debby; Finkel, Nancy; Pitts, Rebecca; Gleim, Scott; Benson, Mark D; Keyes, Michelle J; Farrell, Laurie A; Morgan, Thomas; Jennings, Lori L; Gerszten, Robert ECirculation.2018 Mar 20;29222138
Online Ozonolysis Combined with Ion Mobility-Mass Spectrometry Provides a New Platform for Lipid Isomer Analyses.Poad, Berwyck L J; Zheng, Xueyun; Mitchell, Todd W; Smith, Richard D; Baker, Erin S; Blanksby, Stephen JAnalytical chemistry.;29220163
Metabolomics of tomato xylem sap during bacterial wilt reveals Ralstonia solanacearum produces abundant putrescine, a metabolite that accelerates wilt disease.Lowe-Power, Tiffany M; Hendrich, Connor G; von Roepenack-Lahaye, Edda; Li, Bin; Wu, Dousheng; Mitra, Raka; Dalsing, Beth L; Ricca, Patrizia; Naidoo, Jacinth; Cook, David; Jancewicz, Amy; Masson, Patrick; Thomma, Bart; Lahaye, Thomas; Michael, Anthony J; Allen, CaitilynEnvironmental microbiology.2018 04;29215193
Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients.Wandro, Stephen; Carmody, Lisa; Gallagher, Tara; LiPuma, John J; Whiteson, KatrinemSystems.2017 Nov-Dec;29202048
Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics.Lai, Zijuan; Tsugawa, Hiroshi; Wohlgemuth, Gert; Mehta, Sajjan; Mueller, Matthew; Zheng, Yuxuan; Ogiwara, Atsushi; Meissen, John; Showalter, Megan; Takeuchi, Kohei; Kind, Tobias; Beal, Peter; Arita, Masanori; Fiehn, OliverNature methods.2018 Jan;29176591
Diet-induced obesity and weight loss alter bile acid concentrations and bile acid-sensitive gene expression in insulin target tissues of C57BL/6J mice.La Frano, Michael R; Hernandez-Carretero, Angelina; Weber, Natalie; Borkowski, Kamil; Pedersen, Theresa L; Osborn, Olivia; Newman, John WNutrition research (New York, N.Y.).2017 Oct;29173647
Granzyme A in Human Platelets Regulates the Synthesis of Proinflammatory Cytokines by Monocytes in Aging.Campbell, Robert A; Franks, Zechariah; Bhatnagar, Anish; Rowley, Jesse W; Manne, Bhanu K; Supiano, Mark A; Schwertz, Hansjorg; Weyrich, Andrew S; Rondina, Matthew TJournal of immunology (Baltimore, Md. : 1950).2018 Jan 01;29167233
A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements.Orton, Daniel J; Tfaily, Malak M; Moore, Ronald J; LaMarche, Brian L; Zheng, Xueyun; Fillmore, Thomas L; Chu, Rosalie K; Weitz, Karl K; Monroe, Matthew E; Kelly, Ryan T; Smith, Richard D; Baker, Erin SAnalytical chemistry.2018 Jan 02;29161511
Noninvasive liquid diet delivery of stable isotopes into mouse models for deep metabolic network tracing.Sun, Ramon C; Fan, Teresa W-M; Deng, Pan; Higashi, Richard M; Lane, Andrew N; Le, Anh-Thu; Scott, Timothy L; Sun, Qiushi; Warmoes, Marc O; Yang, YeNature communications.2017 Nov 21;29158483
LipidQC: Method Validation Tool for Visual Comparison to SRM 1950 Using NIST Interlaboratory Comparison Exercise Lipid Consensus Mean Estimate Values.Ulmer, Candice Z; Ragland, Jared M; Koelmel, Jeremy P; Heckert, Alan; Jones, Christina M; Garrett, Timothy J; Yost, Richard A; Bowden, John AAnalytical chemistry.2017 12 19;29148710
Skeletal muscle overexpression of nicotinamide phosphoribosyl transferase in mice coupled with voluntary exercise augments exercise endurance.Costford, Sheila R; Brouwers, Bram; Hopf, Meghan E; Sparks, Lauren M; Dispagna, Mauro; Gomes, Ana P; Cornnell, Heather H; Petucci, Chris; Phelan, Peter; Xie, Hui; Yi, Fanchao; Walter, Glenn A; Osborne, Timothy F; Sinclair, David A; Mynatt, Randall L; Ayala, Julio E; Gardell, Stephen J; Smith, Steven RMolecular metabolism.2018 Jan;29146412
Glycolytic reprogramming through PCK2 regulates tumor initiation of prostate cancer cells.Zhao, Jiangsha; Li, Jieran; Fan, Teresa W M; Hou, Steven XOncotarget.2017 Oct 13;29137367
Integration of metabolomics, transcriptomics, and microRNA expression profiling reveals a miR-143-HK2-glucose network underlying zinc-deficiency-associated esophageal neoplasia.Fong, Louise Y; Jing, Ruiyan; Smalley, Karl J; Taccioli, Cristian; Fahrmann, Johannes; Barupal, Dinesh K; Alder, Hansjuerg; Farber, John L; Fiehn, Oliver; Croce, Carlo MOncotarget.2017 Oct 10;29137232
Significance estimation for large scale metabolomics annotations by spectral matching.Scheubert, Kerstin; Hufsky, Franziska; Petras, Daniel; Wang, Mingxun; Nothias, Louis-Félix; Dührkop, Kai; Bandeira, Nuno; Dorrestein, Pieter C; Böcker, SebastianNature communications.2017 Nov 14;29133785
Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets.Barupal, Dinesh Kumar; Fiehn, OliverScientific reports.2017 Nov 06;29109515
Targeted Metabolomic Profiling of Plasma and Survival in Heart Failure Patients.Lanfear, David E; Gibbs, Joseph J; Li, Jia; She, Ruicong; Petucci, Christopher; Culver, Jeffrey A; Tang, W H Wilson; Pinto, Yigal M; Williams, L Keoki; Sabbah, Hani N; Gardell, Stephen JJACC. Heart failure.2017 Nov;29096792
Obesity-induced changes in lipid mediators persist after weight loss.Hernandez-Carretero, A; Weber, N; La Frano, M R; Ying, W; Lantero Rodriguez, J; Sears, D D; Wallenius, V; Börgeson, E; Newman, J W; Osborn, OInternational journal of obesity (2005).2017 Nov 01;29089614
Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy.Bla?enovi?, Ivana; Kind, Tobias; Torba?inovi?, Hrvoje; Obrenovi?, Slobodan; Mehta, Sajjan S; Tsugawa, Hiroshi; Wermuth, Tobias; Schauer, Nicolas; Jahn, Martina; Biedendieck, Rebekka; Jahn, Dieter; Fiehn, OliverJournal of cheminformatics.2017 May 25;29086039
Meta-mass shift chemical profiling of metabolomes from coral reefs.Hartmann, Aaron C; Petras, Daniel; Quinn, Robert A; Protsyuk, Ivan; Archer, Frederick I; Ransome, Emma; Williams, Gareth J; Bailey, Barbara A; Vermeij, Mark J A; Alexandrov, Theodore; Dorrestein, Pieter C; Rohwer, Forest LProceedings of the National Academy of Sciences of the United States of America.2017 Oct 31;29078340
Increased Brain Glucose Uptake After 12 Weeks of Aerobic High-Intensity Interval Training in Young and Older Adults.Robinson, Matthew M; Lowe, Val J; Nair, K SreekumaranThe Journal of clinical endocrinology and metabolism.2018 Jan 01;29077855
Validating Quantitative Untargeted Lipidomics Across Nine Liquid Chromatography-High-Resolution Mass Spectrometry Platforms.Cajka, Tomas; Smilowitz, Jennifer T; Fiehn, OliverAnalytical chemistry.2017 11 21;29064229
Metabolic Comparison of Dorsal versus Ventral Cells Directly in the Live 8-cell Frog Embryo by Microprobe Single-cell CE-ESI-MS.Onjiko, Rosemary M; Plotnick, David O; Moody, Sally A; Nemes, PeterAnalytical methods : advancing methods and applications.2017 Sep 14;29062391
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.Garg, Neha; Wang, Mingxun; Hyde, Embriette; da Silva, Ricardo R; Melnik, Alexey V; Protsyuk, Ivan; Bouslimani, Amina; Lim, Yan Wei; Wong, Richard; Humphrey, Greg; Ackermann, Gail; Spivey, Timothy; Brouha, Sharon S; Bandeira, Nuno; Lin, Grace Y; Rohwer, Forest; Conrad, Douglas J; Alexandrov, Theodore; Knight, Rob; Dorrestein, Pieter CCell host & microbe.2017 Nov 08;29056429
Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion.Verhoeven, Koen J F; Verbon, Eline H; van Gurp, Thomas P; Oplaat, Carla; Ferreira de Carvalho, Julie; Morse, Alison M; Stahl, Mark; Macel, Mirka; McIntyre, Lauren MThe New phytologist.2017 Oct 16;29034954
Impaired ?-Oxidation and Altered Complex Lipid Fatty Acid Partitioning with Advancing CKD.Afshinnia, Farsad; Rajendiran, Thekkelnaycke M; Soni, Tanu; Byun, Jaeman; Wernisch, Stefanie; Sas, Kelli M; Hawkins, Jennifer; Bellovich, Keith; Gipson, Debbie; Michailidis, George; Pennathur, Subramaniam; Michigan Kidney Translational Core CPROBE Investigator GroupJournal of the American Society of Nephrology : JASN.2018 Jan;29021384
(13)C/(31)P MRS Metabolic Biomarkers of Disease Progression and Response to AAV Delivery of hGAA in a Mouse Model of Pompe Disease.Baligand, Celine; Todd, Adrian G; Lee-McMullen, Brittany; Vohra, Ravneet S; Byrne, Barry J; Falk, Darin J; Walter, Glenn AMolecular therapy. Methods & clinical development.2017 Dec 15;29018835
Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.Bowden, John A; Heckert, Alan; Ulmer, Candice Z; Jones, Christina M; Koelmel, Jeremy P; Abdullah, Laila; Ahonen, Linda; Alnouti, Yazen; Armando, Aaron M; Asara, John M; Bamba, Takeshi; Barr, John R; Bergquist, Jonas; Borchers, Christoph H; Brandsma, Joost; Breitkopf, Susanne B; Cajka, Tomas; Cazenave-Gassiot, Amaury; Checa, Antonio; Cinel, Michelle A; Colas, Romain A; Cremers, Serge; Dennis, Edward A; Evans, James E; Fauland, Alexander; Fiehn, Oliver; Gardner, Michael S; Garrett, Timothy J; Gotlinger, Katherine H; Han, Jun; Huang, Yingying; Neo, Aveline Huipeng; Hyötyläinen, Tuulia; Izumi, Yoshihiro; Jiang, Hongfeng; Jiang, Houli; Jiang, Jiang; Kachman, Maureen; Kiyonami, Reiko; Klavins, Kristaps; Klose, Christian; Köfeler, Harald C; Kolmert, Johan; Koal, Therese; Koster, Grielof; Kuklenyik, Zsuzsanna; Kurland, Irwin J; Leadley, Michael; Lin, Karen; Maddipati, Krishna Rao; McDougall, Danielle; Meikle, Peter J; Mellett, Natalie A; Monnin, Cian; Moseley, M Arthur; Nandakumar, Renu; Oresic, Matej; Patterson, Rainey; Peake, David; Pierce, Jason S; Post, Martin; Postle, Anthony D; Pugh, Rebecca; Qiu, Yunping; Quehenberger, Oswald; Ramrup, Parsram; Rees, Jon; Rembiesa, Barbara; Reynaud, Denis; Roth, Mary R; Sales, Susanne; Schuhmann, Kai; Schwartzman, Michal Laniado; Serhan, Charles N; Shevchenko, Andrej; Somerville, Stephen E; St John-Williams, Lisa; Surma, Michal A; Takeda, Hiroaki; Thakare, Rhishikesh; Thompson, J Will; Torta, Federico; Triebl, Alexander; Trötzmüller, Martin; Ubhayasekera, S J Kumari; Vuckovic, Dajana; Weir, Jacquelyn M; Welti, Ruth; Wenk, Markus R; Wheelock, Craig E; Yao, Libin; Yuan, Min; Zhao, Xueqing Heather; Zhou, SenlinJournal of lipid research.2017 Dec;28986437
Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice.Deol, Poonamjot; Fahrmann, Johannes; Yang, Jun; Evans, Jane R; Rizo, Antonia; Grapov, Dmitry; Salemi, Michelle; Wanichthanarak, Kwanjeera; Fiehn, Oliver; Phinney, Brett; Hammock, Bruce D; Sladek, Frances MScientific reports.2017 Oct 02;28970503
Effects of stimulation technique, anatomical region, and time on human sweat lipid mediator profiles.Agrawal, Karan; Waller, Justin D; Pedersen, Theresa L; Newman, John WProstaglandins & other lipid mediators.2017 Sep 21;28942325
Evaluation of intensity drift correction strategies using MetaboDrift, a normalization tool for multi-batch metabolomics data.Thonusin, Chanisa; IglayReger, Heidi B; Soni, Tanu; Rothberg, Amy E; Burant, Charles F; Evans, Charles RJournal of chromatography. A.2017 Nov 10;28927937
Effect of endotoxin and alum adjuvant vaccine on peanut allergy.Johnson-Weaver, Brandi T; McRitchie, Susan; Mercier, Kelly A; Pathmasiri, Wimal; Sumner, Susan J; Chan, Cliburn; Germolec, Dori; Kulis, Michael; Burks, A Wesley; Staats, Herman FThe Journal of allergy and clinical immunology.2017 Sep 16;28927819
Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota.Li, Guolin; Xie, Cen; Lu, Siyu; Nichols, Robert G; Tian, Yuan; Li, Licen; Patel, Daxeshkumar; Ma, Yinyan; Brocker, Chad N; Yan, Tingting; Krausz, Kristopher W; Xiang, Rong; Gavrilova, Oksana; Patterson, Andrew D; Gonzalez, Frank JCell metabolism.2017 Oct 03;28918936
The NQO1 bioactivatable drug, ?-lapachone, alters the redox state of NQO1+ pancreatic cancer cells, causing perturbation in central carbon metabolism.Silvers, Molly A; Deja, Stanislaw; Singh, Naveen; Egnatchik, Robert A; Sudderth, Jessica; Luo, Xiuquan; Beg, Muhammad S; Burgess, Shawn C; DeBerardinis, Ralph J; Boothman, David A; Merritt, Matthew EThe Journal of biological chemistry.2017 11 03;28916726
Eosinophilic and Noneosinophilic Asthma.Carr, Tara F; Zeki, Amir A; Kraft, MonicaAmerican journal of respiratory and critical care medicine.2018 Jan 01;28910134
Two Cooperative Glycosyltransferases Are Responsible for the Sugar Diversity of Saquayamycins Isolated from Streptomyces sp. KY 40-1.Salem, Shaimaa M; Weidenbach, Stevi; Rohr, JürgenACS chemical biology.2017 10 20;28892347
Personalized polyunsaturated fatty acids as a potential adjunctive treatment for anorexia nervosa.Shih, P Betty; Morisseau, Christophe; Le, Thu; Woodside, Blake; German, J BruceProstaglandins & other lipid mediators.2017 Nov;28873340
Postprandial effect to decrease soluble epoxide hydrolase activity: roles of insulin and gut microbiota.Yang, Jun; Oh, Young Taek; Wan, Debin; Watanabe, Richard M; Hammock, Bruce D; Youn, Jang HThe Journal of nutritional biochemistry.2017 Nov;28863368
Genetic Depletion of Adipocyte Creatine Metabolism Inhibits Diet-Induced Thermogenesis and Drives Obesity.Kazak, Lawrence; Chouchani, Edward T; Lu, Gina Z; Jedrychowski, Mark P; Bare, Curtis J; Mina, Amir I; Kumari, Manju; Zhang, Song; Vuckovic, Ivan; Laznik-Bogoslavski, Dina; Dzeja, Petras; Banks, Alexander S; Rosen, Evan D; Spiegelman, Bruce MCell metabolism.2017 Oct 03;28844881
Comparison of global metabolite extraction strategies for soybeans using UHPLC-HRMS.Mahmud, Iqbal; Sternberg, Sandi; Williams, Michael; Garrett, Timothy JAnalytical and bioanalytical chemistry.2017 Aug 26;28844081
Metabolic tracing analysis reveals substrate-specific metabolic deficits in platelet storage lesion.Sims, Carrie; Salliant, Noelle; Worth, Andrew J; Parry, Robert; Mesaros, Clementina; Blair, Ian A; Snyder, Nathaniel WTransfusion.2017 11;28836286
Dose-related liver injury of Geniposide associated with the alteration in bile acid synthesis and transportation.Tian, Jingzhuo; Zhu, Jingjing; Yi, Yan; Li, Chunying; Zhang, Yushi; Zhao, Yong; Pan, Chen; Xiang, Shixie; Li, Xiaolong; Li, Guiqin; Newman, John W; Feng, Xiaoyi; Liu, Jing; Han, Jiayin; Wang, Lianmei; Gao, Yue; La Frano, Michael R; Liang, AihuaScientific reports.2017 08 21;28827769
Cytochrome P450 monooxygenase lipid metabolites are significant second messengers in the resolution of choroidal neovascularization.Hasegawa, Eiichi; Inafuku, Saori; Mulki, Lama; Okunuki, Yoko; Yanai, Ryoji; Smith, Kaylee E; Kim, Clifford B; Klokman, Garrett; Bielenberg, Diane R; Puli, Narender; Falck, John R; Husain, Deeba; Miller, Joan W; Edin, Matthew L; Zeldin, Darryl C; Lee, Kin Sing Stephen; Hammock, Bruce D; Schunck, Wolf-Hagen; Connor, Kip MProceedings of the National Academy of Sciences of the United States of America.2017 Sep 05;28827330
Accurate Identification of Unknown and Known Metabolic Mixture Components by Combining 3D NMR with Fourier Transform Ion Cyclotron Resonance Tandem Mass Spectrometry.Wang, Cheng; He, Lidong; Li, Da-Wei; Bruschweiler-Li, Lei; Marshall, Alan G; Brüschweiler, RafaelJournal of proteome research.2017 Oct 06;28795575
Metabolomic Evaluation of the Consequences of Plasma Cystathionine Elevation in Adults with Stable Angina Pectoris.DeRatt, Barbara N; Ralat, Maria A; Lysne, Vegard; Tayyari, Fariba; Dhar, Indu; Edison, Arthur S; Garrett, Timothy J; Midttun, Øivind; Ueland, Per Magne; Nygård, Ottar Kjell; Gregory 3rd, Jesse FThe Journal of nutrition.2017 09;28794210
Draft Genome Sequences of Salmonella enterica Serovar Typhimurium LT2 with Deleted Chitinases That Are Emerging Virulence Factors.Arabyan, Narine; Huang, Bihua C; Weimer, Bart CGenome announcements.2017 Aug 03;28774970
Superoxide Dismutase 2 is dispensable for platelet function.Fidler, Trevor P; Rowley, Jesse W; Araujo, Claudia; Boudreau, Luc H; Marti, Alex; Souvenir, Rhonda; Dale, Kali; Boilard, Eric; Weyrich, Andrew S; Abel, E DaleThrombosis and haemostasis.2017 Oct 05;28771279
Addressing metabolic heterogeneity in clear cell renal cell carcinoma with quantitative Dixon MRI.Zhang, Yue; Udayakumar, Durga; Cai, Ling; Hu, Zeping; Kapur, Payal; Kho, Eun-Young; Pavía-Jiménez, Andrea; Fulkerson, Michael; de Leon, Alberto Diaz; Yuan, Qing; Dimitrov, Ivan E; Yokoo, Takeshi; Ye, Jin; Mitsche, Matthew A; Kim, Hyeonwoo; McDonald, Jeffrey G; Xi, Yin; Madhuranthakam, Ananth J; Dwivedi, Durgesh K; Lenkinski, Robert E; Cadeddu, Jeffrey A; Margulis, Vitaly; Brugarolas, James; DeBerardinis, Ralph J; Pedrosa, IvanJCI insight.2017 Aug 03;28768909
An Interlaboratory Evaluation of Drift Tube Ion Mobility-Mass Spectrometry Collision Cross Section Measurements.Stow, Sarah M; Causon, Tim J; Zheng, Xueyun; Kurulugama, Ruwan T; Mairinger, Teresa; May, Jody C; Rennie, Emma E; Baker, Erin S; Smith, Richard D; McLean, John A; Hann, Stephan; Fjeldsted, John CAnalytical chemistry.2017 Sep 05;28763190
Metabolomic Determinants of Metabolic Risk in Mexican Adolescents.Perng, Wei; Hector, Emily C; Song, Peter X K; Tellez Rojo, Martha Maria; Raskind, Sasha; Kachman, Maureen; Cantoral, Alejandra; Burant, Charles F; Peterson, Karen EObesity (Silver Spring, Md.).2017 Sep;28758362
Insulin induces a shift in lipid and primary carbon metabolites in a model of fasting-induced insulin resistance.Olmstead, Keedrian I; La Frano, Michael R; Fahrmann, Johannes; Grapov, Dmitry; Viscarra, Jose A; Newman, John W; Fiehn, Oliver; Crocker, Daniel E; Filipp, Fabian V; Ortiz, Rudy MMetabolomics : Official journal of the Metabolomic Society.2017 May;28757815
Distinct Lipidomic Landscapes Associated with Clinical Stages of Urothelial Cancer of the Bladder.Piyarathna, Danthasinghe Waduge Badrajee; Rajendiran, Thekkelnaycke M; Putluri, Vasanta; Vantaku, Venkatrao; Soni, Tanu; von Rundstedt, Friedrich-Carl; Donepudi, Sri Ramya; Jin, Feng; Maity, Suman; Ambati, Chandrashekar R; Dong, Jianrong; Gödde, Daniel; REuropean urology focus.2018 12;28753886
Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress.Jin, Meiyan; Fuller, Gregory G; Han, Ting; Yao, Yao; Alessi, Amelia F; Freeberg, Mallory A; Roach, Nathan P; Moresco, James J; Karnovsky, Alla; Baba, Misuzu; Yates 3rd, John R; Gitler, Aaron D; Inoki, Ken; Klionsky, Daniel J; Kim, John KCell reports.2017 Jul 25;28746874
Alternatives to Nuclear Overhauser Enhancement Spectroscopy Presat and Carr-Purcell-Meiboom-Gill Presat for NMR-Based Metabolomics.Le Guennec, Adrien; Tayyari, Fariba; Edison, Arthur SAnalytical chemistry.2017 Sep 05;28737383
Metabolomic characteristics of cholesterol-induced non-obese nonalcoholic fatty liver disease in mice.Tu, Lan N; Showalter, Megan R; Cajka, Tomas; Fan, Sili; Pillai, Viju V; Fiehn, Oliver; Selvaraj, VimalScientific reports.2017 Jul 21;28733574
Metabolomics reveal physiological changes in mayfly larvae (Neocloeon triangulifer) at ecological upper thermal limits.Chou, Hsuan; Pathmasiri, Wimal; Deese-Spruill, Jocelin; Sumner, Susan; Buchwalter, David BJournal of insect physiology.2017 Aug;28733240
Fatty acid and lipidomic data in normal and tumor colon tissues of rats fed diets with and without fish oil.Djuric, Zora; Aslam, Muhammad Nadeem; Simon, Becky R; Sen, Ananda; Jiang, Yan; Ren, Jianwei; Chan, Rena; Soni, Tanu; Rajendiran, Thekkelnaycke M; Smith, William L; Brenner, Dean EData in brief.2017 Aug;28725670
NMR Metabolomics in Ionizing Radiation.Hu, Jian Zhi; Xiao, Xiongjie; Hu, Mary YClinics in oncology (Belmont, Calif.).2016;28707005
Proteomics and metabolomics in ageing research: from biomarkers to systems biology.Hoffman, Jessica M; Lyu, Yang; Pletcher, Scott D; Promislow, Daniel E LEssays in biochemistry.2017 Jul 15;28698311
LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data.Koelmel, Jeremy P; Kroeger, Nicholas M; Ulmer, Candice Z; Bowden, John A; Patterson, Rainey E; Cochran, Jason A; Beecher, Christopher W W; Garrett, Timothy J; Yost, Richard ABMC bioinformatics.2017 Jul 10;28693421
Myeloperoxidase Levels and Its Product 3-Chlorotyrosine Predict Chronic Kidney Disease Severity and Associated Coronary Artery Disease.Afshinnia, Farsad; Zeng, Lixia; Byun, Jaeman; Gadegbeku, Crystal A; Magnone, Maria Chiara; Whatling, Carl; Valastro, Barbara; Kretzler, Matthias; Pennathur, Subramaniam; Michigan Kidney Translational Core CPROBE Investigator GroupAmerican journal of nephrology.2017;28668952
LC-MS-Based Lipidomics and Automated Identification of Lipids Using the LipidBlast In-Silico MS/MS Library.Cajka, Tomas; Fiehn, OliverMethods in molecular biology (Clifton, N.J.).2017;28660581
A Robust Lipidomics Workflow for Mammalian Cells, Plasma, and Tissue Using Liquid-Chromatography High-Resolution Tandem Mass Spectrometry.Ulmer, Candice Z; Patterson, Rainey E; Koelmel, Jeremy P; Garrett, Timothy J; Yost, Richard AMethods in molecular biology (Clifton, N.J.).2017;28660577
Metabolite Measurement: Pitfalls to Avoid and Practices to Follow.Lu, Wenyun; Su, Xiaoyang; Klein, Matthias S; Lewis, Ian A; Fiehn, Oliver; Rabinowitz, Joshua DAnnual review of biochemistry.2017 Jun 20;28654323
Distinguishing d- and l-aspartic and isoaspartic acids in amyloid ? peptides with ultrahigh resolution ion mobility spectrometry.Zheng, Xueyun; Deng, Liulin; Baker, Erin S; Ibrahim, Yehia M; Petyuk, Vladislav A; Smith, Richard DChemical communications (Cambridge, England).2017 Jul 11;28654112
Draft Genome Sequences of Salmonella Lysozyme Gene Knockout Mutants.Arabyan, Narine; Huang, Bihua C; Weimer, Bart CGenome announcements.2017 Jun 08;28596411
Exploring cancer metabolism using stable isotope-resolved metabolomics (SIRM).Bruntz, Ronald C; Lane, Andrew N; Higashi, Richard M; Fan, Teresa W-MThe Journal of biological chemistry.2017 Jul 14;28592486
Chloroformate derivatization for tracing the fate of Amino acids in cells and tissues by multiple stable isotope resolved metabolomics (mSIRM).Yang, Ye; Fan, Teresa W-M; Lane, Andrew N; Higashi, Richard MAnalytica chimica acta.2017 Jul 11;28576319
Biological determinants of health: Genes, microbes, and metabolism exemplars of nursing science.Ferranti, Erin P; Grossmann, Ruth; Starkweather, Angela; Heitkemper, MargaretNursing outlook.2017 Sep - Oct;28576296
Metabolomics biomarkers to predict acamprosate treatment response in alcohol-dependent subjects.Hinton, David J; Vázquez, Marely Santiago; Geske, Jennifer R; Hitschfeld, Mario J; Ho, Ada M C; Karpyak, Victor M; Biernacka, Joanna M; Choi, Doo-SupScientific reports.2017 May 31;28566752
Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation.Calvert, Andrea E; Chalastanis, Alexandra; Wu, Yongfei; Hurley, Lisa A; Kouri, Fotini M; Bi, Yingtao; Kachman, Maureen; May, Jasmine L; Bartom, Elizabeth; Hua, Youjia; Mishra, Rama K; Schiltz, Gary E; Dubrovskyi, Oleksii; Mazar, Andrew P; Peter, Marcus E;Cell reports.2017 May 30;28564604
Overexpression of the human DEK oncogene reprograms cellular metabolism and promotes glycolysis.Matrka, Marie C; Watanabe, Miki; Muraleedharan, Ranjithmenon; Lambert, Paul F; Lane, Andrew N; Romick-Rosendale, Lindsey E; Wells, Susanne IPloS one.2017;28558019
Local cryotherapy minimally impacts the metabolome and transcriptome of human skeletal muscle.Sarver, Dylan C; Sugg, Kristoffer B; Disser, Nathaniel P; Enselman, Elizabeth R Sibilsky; Awan, Tariq M; Mendias, Christopher LScientific reports.2017 May 25;28546635
Lipoxygenase Activity Accelerates Programmed Spore Germination in Aspergillus fumigatus.Fischer, Gregory J; Bacon, William; Yang, Jun; Palmer, Jonathan M; Dagenais, Taylor; Hammock, Bruce D; Keller, Nancy PFrontiers in microbiology.2017;28536571
Comparison of statistical methods for detection of serum lipid biomarkers for mesothelioma and asbestos exposure.Xu, Rengyi; Mesaros, Clementina; Weng, Liwei; Snyder, Nathaniel W; Vachani, Anil; Blair, Ian A; Hwang, Wei-TingBiomarkers in medicine.2017 Jul;28534416
Amylases and Their Importance during Glycan Degradation: Genome Sequence Release of Salmonella Amylase Knockout Strains.Arabyan, Narine; Huang, Bihua C; Weimer, Bart CGenome announcements.2017 May 18;28522713
Pharmacological inhibition of soluble epoxide hydrolase or genetic deletion reduces diclofenac-induced gastric ulcers.Goswami, Sumanta Kumar; Rand, Amelia Ann; Wan, Debin; Yang, Jun; Inceoglu, Bora; Thomas, Melany; Morisseau, Christophe; Yang, Guang-Yu; Hammock, Bruce DLife sciences.2017 Jul 01;28522175
Combining a nontargeted and targeted metabolomics approach to identify metabolic pathways significantly altered in polycystic ovary syndrome.Chang, Alice Y; Lalia, Antigoni Z; Jenkins, Gregory D; Dutta, Tumpa; Carter, Rickey E; Singh, Ravinder J; Nair, K SreekumaranMetabolism: clinical and experimental.2017 Jun;28521878
Cancer progression by reprogrammed BCAA metabolism in myeloid leukaemia.Hattori, Ayuna; Tsunoda, Makoto; Konuma, Takaaki; Kobayashi, Masayuki; Nagy, Tamas; Glushka, John; Tayyari, Fariba; McSkimming, Daniel; Kannan, Natarajan; Tojo, Arinobu; Edison, Arthur S; Ito, TakahiroNature.2017 05 25;28514443
Bed morphological features associated with an optimal slurry concentration for reproducible preparation of efficient capillary ultrahigh pressure liquid chromatography columns.Reising, Arved E; Godinho, Justin M; Jorgenson, James W; Tallarek, UlrichJournal of chromatography. A.2017 Jun 30;28511930
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.Ma, Jian; Casey, Cameron P; Zheng, Xueyun; Ibrahim, Yehia M; Wilkins, Christopher S; Renslow, Ryan S; Thomas, Dennis G; Payne, Samuel H; Monroe, Matthew E; Smith, Richard D; Teeguarden, Justin G; Baker, Erin S; Metz, Thomas OBioinformatics (Oxford, England).2017 Sep 01;28505286
Platelet microparticles infiltrating solid tumors transfer miRNAs that suppress tumor growth.Michael, James V; Wurtzel, Jeremy G T; Mao, Guang Fen; Rao, A Koneti; Kolpakov, Mikhail A; Sabri, Abdelkarim; Hoffman, Nicholas E; Rajan, Sudarsan; Tomar, Dhanendra; Madesh, Muniswamy; Nieman, Marvin T; Yu, Johnny; Edelstein, Leonard C; Rowley, Jesse W; Weyrich, Andrew S; Goldfinger, Lawrence EBlood.2017 08 03;28500171
Discovering and linking public omics data sets using the Omics Discovery Index.Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; Hermjakob, HenningNature biotechnology.2017 05 09;28486464
Effects of fish oil supplementation on prostaglandins in normal and tumor colon tissue: modulation by the lipogenic phenotype of colon tumors.Djuric, Zora; Aslam, Muhammad Nadeem; Simon, Becky R; Sen, Ananda; Jiang, Yan; Ren, Jianwei; Chan, Rena; Soni, Tanu; Rajendiran, T M; Smith, William L; Brenner, Dean EThe Journal of nutritional biochemistry.2017 Apr 25;28486173
Synthesis of cyclooxygenase metabolites of 8,9-epoxyeicosatrienoic acid (EET): 11- and 15-hydroxy 8,9-EETs.Barnych, Bogdan; Rand, Amy A; Cajka, Tomas; Lee, Kin Sing Stephen; Hammock, Bruce DOrganic & biomolecular chemistry.2017 May 23;28470279
NMR-based Metabolomics Analysis of Liver from C57BL/6 Mouse Exposed to Ionizing Radiation.Xiao, Xiongjie; Hu, Mary; Zhang, Xu; Hu, Jian ZhiRadiation research.2017 07;28463589
Lipidomic Signature of Progression of Chronic Kidney Disease in the Chronic Renal Insufficiency Cohort.Afshinnia, Farsad; Rajendiran, Thekkelnaycke M; Karnovsky, Alla; Soni, Tanu; Wang, Xue; Xie, Dawei; Yang, Wei; Shafi, Tariq; Weir, Matthew R; He, Jiang; Brecklin, Carolyn S; Rhee, Eugene P; Schelling, Jeffrey R; Ojo, Akinlolu; Feldman, Harold; MichailidisKidney international reports.2016 Nov;28451650
Identification of small molecules using accurate mass MS/MS search.Kind, Tobias; Tsugawa, Hiroshi; Cajka, Tomas; Ma, Yan; Lai, Zijuan; Mehta, Sajjan S; Wohlgemuth, Gert; Barupal, Dinesh Kumar; Showalter, Megan R; Arita, Masanori; Fiehn, OliverMass spectrometry reviews.2018 07;28436590
In Situ Microprobe Single-Cell Capillary Electrophoresis Mass Spectrometry: Metabolic Reorganization in Single Differentiating Cells in the Live Vertebrate (Xenopus laevis) Embryo.Onjiko, Rosemary M; Portero, Erika P; Moody, Sally A; Nemes, PeterAnalytical chemistry.2017 Jul 05;28434226
UHPLC-Q-Orbitrap-HRMS-based global metabolomics reveal metabolome modifications in plasma of young women after cranberry juice consumption.Liu, Haiyan; Garrett, Timothy J; Su, Zhihua; Khoo, Christina; Gu, LiweiThe Journal of nutritional biochemistry.2017 Jul;28433923
Staphylococcus aureus nitric oxide synthase (saNOS) modulates aerobic respiratory metabolism and cell physiology.Mogen, Austin B; Carroll, Ronan K; James, Kimberly L; Lima, Genevy; Silva, Dona; Culver, Jeffrey A; Petucci, Christopher; Shaw, Lindsey N; Rice, Kelly CMolecular microbiology.2017 Apr 21;28431199
Very-long-chain ?-3 fatty acid supplements and adipose tissue functions: a randomized controlled trial.Hames, Kazanna C; Morgan-Bathke, Maria; Harteneck, Debra A; Zhou, Lendia; Port, John D; Lanza, Ian R; Jensen, Michael DThe American journal of clinical nutrition.2017 Jun;28424185
Kidney triglyceride accumulation in the fasted mouse is dependent upon serum free fatty acids.Scerbo, Diego; Son, Ni-Huiping; Sirwi, Alaa; Zeng, Lixia; Sas, Kelli M; Cifarelli, Vincenza; Schoiswohl, Gabriele; Huggins, Lesley-Ann; Gumaste, Namrata; Hu, Yunying; Pennathur, Subramaniam; Abumrad, Nada A; Kershaw, Erin E; Hussain, M Mahmood; Susztak, KJournal of lipid research.2017 Jun;28404638
Plasma metabolomics in adults with cystic fibrosis during a pulmonary exacerbation: A pilot randomized study of high-dose vitamin D3 administration.Alvarez, Jessica A; Chong, Elizabeth Y; Walker, Douglas I; Chandler, Joshua D; Michalski, Ellen S; Grossmann, Ruth E; Uppal, Karan; Li, Shuzhao; Frediani, Jennifer K; Tirouvanziam, Rabindra; Tran, ViLinh T; Tangpricha, Vin; Jones, Dean P; Ziegler, Thomas Metabolism: clinical and experimental.2017 May;28403943
Cyclooxygenase-derived proangiogenic metabolites of epoxyeicosatrienoic acids.Rand, Amy A; Barnych, Bogdan; Morisseau, Christophe; Cajka, Tomas; Lee, Kin Sing Stephen; Panigrahy, Dipak; Hammock, Bruce DProceedings of the National Academy of Sciences of the United States of America.2017 Apr 25;28396419
Active-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase.Hvorecny, Kelli L; Bahl, Christopher D; Kitamura, Seiya; Lee, Kin Sing Stephen; Hammock, Bruce D; Morisseau, Christophe; Madden, Dean RStructure (London, England : 1993).2017 May 02;28392259
Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging.Burnum-Johnson, Kristin E; Baker, Erin S; Metz, Thomas OPlacenta.2017 Dec;28392013
Influence of omega-3 fatty acids on skeletal muscle protein metabolism and mitochondrial bioenergetics in older adults.Lalia, Antigoni Z; Dasari, Surendra; Robinson, Matthew M; Abid, Hinnah; Morse, Dawn M; Klaus, Katherine A; Lanza, Ian RAging.2017 Apr;28379838
Anaerobic Bacterial Fermentation Products Increase Tuberculosis Risk in Antiretroviral-Drug-Treated HIV Patients.Segal, Leopoldo N; Clemente, Jose C; Li, Yonghua; Ruan, Chunhai; Cao, Jane; Danckers, Mauricio; Morris, Alison; Tapyrik, Sarah; Wu, Benjamin G; Diaz, Philip; Calligaro, Gregory; Dawson, Rodney; van Zyl-Smit, Richard N; Dheda, Keertan; Rom, William N; Weiden, Michael DCell host & microbe.2017 Apr 12;28366509
Randomized Controlled Trial of a MUFA or Fiber-Rich Diet on Hepatic Fat in Prediabetes.Errazuriz, Isabel; Dube, Simmi; Slama, Michael; Visentin, Roberto; Nayar, Sunita; O'Connor, Helen; Cobelli, Claudio; Das, Swapan Kumar; Basu, Ananda; Kremers, Walter Karl; Port, John; Basu, RitaThe Journal of clinical endocrinology and metabolism.2017 May 01;28323952
Preclinical Evaluation of11C-Sarcosine as a Substrate of Proton-Coupled Amino Acid Transporters and First Human Application in Prostate Cancer.Piert, Morand; Shao, Xia; Raffel, David; Davenport, Mathew S; Montgomery, Jeffrey; Kunju, Lakshmi Priya; Hockley, Brian G; Siddiqui, Javed; Scott, Peter J H; Chinnaiyan, Arul M; Rajendiran, ThekkelnayckeJournal of nuclear medicine : official publication, Society of Nuclear Medicine.2017 Aug;28302759
Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.Zheng, Xueyun; Wojcik, Roza; Zhang, Xing; Ibrahim, Yehia M; Burnum-Johnson, Kristin E; Orton, Daniel J; Monroe, Matthew E; Moore, Ronald J; Smith, Richard D; Baker, Erin SAnnual review of analytical chemistry (Palo Alto, Calif.).2017 Jun 12;28301728
Inhibition of spore germination, growth, and toxin activity of clinically relevant C. difficile strains by gut microbiota derived secondary bile acids.Thanissery, Rajani; Winston, Jenessa A; Theriot, Casey MAnaerobe.2017 Mar 06;28279860
Enhanced Protein Translation Underlies Improved Metabolic and Physical Adaptations to Different Exercise Training Modes in Young and Old Humans.Robinson, Matthew M; Dasari, Surendra; Konopka, Adam R; Johnson, Matthew L; Manjunatha, S; Esponda, Raul Ruiz; Carter, Rickey E; Lanza, Ian R; Nair, K SreekumaranCell metabolism.2017 Mar 07;28273480
Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry.Zheng, Xueyun; Renslow, Ryan S; Makola, Mpho M; Webb, Ian K; Deng, Liulin; Thomas, Dennis G; Govind, Niranjan; Ibrahim, Yehia M; Kabanda, Mwadham M; Dubery, Ian A; Heyman, Heino M; Smith, Richard D; Madala, Ntakadzeni E; Baker, Erin SThe journal of physical chemistry letters.2017 Apr 06;28267339
Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation.Koelmel, Jeremy P; Kroeger, Nicholas M; Gill, Emily L; Ulmer, Candice Z; Bowden, John A; Patterson, Rainey E; Yost, Richard A; Garrett, Timothy JJournal of the American Society for Mass Spectrometry.2017 May;28265968
Cytosolic malate dehydrogenase activity helps support glycolysis in actively proliferating cells and cancer.Hanse, E A; Ruan, C; Kachman, M; Wang, D; Lowman, X H; Kelekar, AOncogene.2017 Jul 06;28263970
Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation.Koelmel, Jeremy P; Ulmer, Candice Z; Jones, Christina M; Yost, Richard A; Bowden, John ABiochimica et biophysica acta.2017 Mar 02;28263877
NMR-based Stable Isotope Resolved Metabolomics in systems biochemistry.Lane, Andrew N; Fan, Teresa W-MArchives of biochemistry and biophysics.2017 Mar 02;28263717
Endogenous Glucocorticoid Deficiency in Psoriasis Promotes Inflammation and Abnormal Differentiation.Sarkar, Mrinal K; Kaplan, Nihal; Tsoi, Lam C; Xing, Xianying; Liang, Yun; Swindell, William R; Hoover, Paul; Aravind, Maya; Baida, Gleb; Clark, Matthew; Voorhees, John J; Nair, Rajan P; Elder, James T; Budunova, Irina; Getsios, Spiro; Gudjonsson, Johann EThe Journal of investigative dermatology.2017 Jul;28259685
Altered soluble epoxide hydrolase-derived oxylipins in patients with seasonal major depression: An exploratory study.Hennebelle, Marie; Otoki, Yurika; Yang, Jun; Hammock, Bruce D; Levitt, Anthony J; Taha, Ameer Y; Swardfager, WalterPsychiatry research.2017 Jun;28259037
Inhibition of soluble epoxide hydrolase as a novel approach to high dose diazepam induced hypotension.Ulu, Arzu; Inceoglu, Bora; Yang, Jun; Singh, Vikrant; Vito, Stephen; Wulff, Heike; Hammock, Bruce DJournal of clinical toxicology.2016 Jun;28255523
Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future.Barnes, Stephen; Benton, H Paul; Casazza, Krista; Cooper, Sara J; Cui, Xiangqin; Du, Xiuxia; Engler, Jeffrey; Kabarowski, Janusz H; Li, Shuzhao; Pathmasiri, Wimal; Prasain, Jeevan K; Renfrow, Matthew B; Tiwari, Hemant KJournal of mass spectrometry : JMS.2016 Aug;28239968
Coenzyme A thioester formation of 11- and 15-oxo-eicosatetraenoic acid.Mesaros, Clementina; Arroyo, Alejandro D; Blair, Ian A; Snyder, Nathaniel WProstaglandins & other lipid mediators.2017 Feb 24;28238887
Mass Spectral Feature List Optimizer (MS-FLO): A Tool To Minimize False Positive Peak Reports in Untargeted Liquid Chromatography-Mass Spectroscopy (LC-MS) Data Processing.DeFelice, Brian C; Mehta, Sajjan Singh; Samra, Stephanie; ?ajka, Tomá?; Wancewicz, Benjamin; Fahrmann, Johannes F; Fiehn, OliverAnalytical chemistry.2017 03 21;28225594
An Intestinal Farnesoid X Receptor-Ceramide Signaling Axis Modulates Hepatic Gluconeogenesis in Mice.Xie, Cen; Jiang, Changtao; Shi, Jingmin; Gao, Xiaoxia; Sun, Dongxue; Sun, Lulu; Wang, Ting; Takahashi, Shogo; Anitha, Mallappa; Krausz, Kristopher W; Patterson, Andrew D; Gonzalez, Frank JDiabetes.2017 Mar;28223344
Effects of Metformin and a Mammalian Target of Rapamycin (mTOR) ATP-Competitive Inhibitor on Targeted Metabolomics in Pancreatic Cancer Cell Line.Soliman, Ghada A; Steenson, Sharalyn M; Etekpo, Asserewou HMetabolomics : open access.2016;28217402
Presence of arachidonoyl-carnitine is associated with adverse cardiometabolic responses in hypertensive patients treated with atenolol.Weng, Liming; Gong, Yan; Culver, Jeffrey; Gardell, Stephen J; Petucci, Christopher; Morse, Alison M; Frye, Reginald F; Turner, Stephen T; Chapman, Arlene; Boerwinkle, Eric; Gums, John; Beitelshees, Amber L; Borum, Peggy R; Johnson, Julie A; Garrett, TimotMetabolomics : Official journal of the Metabolomic Society.2016 10;28217401
Performance comparison of three trypsin columns used in liquid chromatography.?lechtová, Tereza; Gilar, Martin; Kalíková, Kv?ta; Moore, Stephanie M; Jorgenson, James W; Tesa?ová, EvaJournal of chromatography. A.2017 Mar 24;28215403
Epimetabolites: discovering metabolism beyond building and burning.Showalter, Megan R; Cajka, Tomas; Fiehn, OliverCurrent opinion in chemical biology.2017 Feb;28213207
Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses.Mach, Núria; Ramayo-Caldas, Yuliaxis; Clark, Allison; Moroldo, Marco; Robert, Céline; Barrey, Eric; López, Jesús Maria; Le Moyec, LaurenceBMC genomics.2017 02 17;28212624
Differential responses of human dendritic cells to metabolites from the oral/airway microbiome.Whiteson, K; Agrawal, S; Agrawal, AClinical and experimental immunology.2017 Jun;28194750
Comprehensive Metabolite Identification Strategy Using Multiple Two-Dimensional NMR Spectra of a Complex Mixture Implemented in the COLMARm Web Server.Bingol, Kerem; Li, Da-Wei; Zhang, Bo; Brüschweiler, RafaelAnalytical chemistry.2016 Dec 20;28193069
Dimethyl Itaconate Is Not Metabolized into Itaconate Intracellularly.ElAzzouny, Mahmoud; Tom, Christopher T M B; Evans, Charles R; Olson, Lori L; Tanga, Mary J; Gallagher, Katherine A; Martin, Brent R; Burant, Charles FThe Journal of biological chemistry.2017 Mar 24;28188288
Metabolites as biomarkers of adverse reactions following vaccination: A pilot study using nuclear magnetic resonance metabolomics.McClenathan, Bruce M; Stewart, Delisha A; Spooner, Christina E; Pathmasiri, Wimal W; Burgess, Jason P; McRitchie, Susan L; Choi, Y Sammy; Sumner, Susan C JVaccine.2017 Mar 01;28169076
Head and Neck Squamous Cell Carcinoma Metabolism Draws on Glutaminolysis, and Stemness Is Specifically Regulated by Glutaminolysis via Aldehyde Dehydrogenase.Kamarajan, Pachiyappan; Rajendiran, Thekkelnaycke M; Kinchen, Jason; Bermúdez, Mercedes; Danciu, Theodora; Kapila, Yvonne LJournal of proteome research.2017 Mar 03;28168879
Perspectives and Expectations in Structural Bioinformatics of Metalloproteins.Yao, Sen; Flight, Robert M; Rouchka, Eric C; Moseley, Hunter N BProteins.2017 Feb 07;28168746
Probing the metabolic phenotype of breast cancer cells by multiple tracer Stable Isotope Resolved Metabolomics.Lane, Andrew N; Tan, Julie; Wang, Yali; Yan, Jun; Higashi, Richard M; Fan, Teresa W-MMetabolic engineering.2017 Feb 02;28163219
Lipidomic Analysis of Oxidized Fatty Acids in Plant and Algae Oils.Richardson, Christine E; Hennebelle, Marie; Otoki, Yurika; Zamora, Daisy; Yang, Jun; Hammock, Bruce D; Taha, Ameer YJournal of agricultural and food chemistry.2017 Mar 08;28157307
2-Hydroxyglutarate produced by neomorphic IDH mutations suppresses homologous recombination and induces PARP inhibitor sensitivity.Sulkowski, Parker L; Corso, Christopher D; Robinson, Nathaniel D; Scanlon, Susan E; Purshouse, Karin R; Bai, Hanwen; Liu, Yanfeng; Sundaram, Ranjini K; Hegan, Denise C; Fons, Nathan R; Breuer, Gregory A; Song, Yuanbin; Mishra-Gorur, Ketu; De Feyter, Henk Science translational medicine.2017 Feb 01;28148839
A new sensitive LC/MS/MS analysis of vitamin D metabolites using a click derivatization reagent, 2-nitrosopyridine.Wan, Debin; Yang, Jun; Barnych, Bogdan; Hwang, Sung Hee; Lee, Kin Sing Stephen; Cui, Yongliang; Niu, Jun; Watsky, Mitchell A; Hammock, Bruce DJournal of lipid research.2017 Apr;28148721
Aberrant coordination geometries discovered in the most abundant metalloproteins.Yao, Sen; Flight, Robert M; Rouchka, Eric C; Moseley, Hunter N BProteins.2017 Jan 31;28142195
Combined Effects of Gestational Phthalate Exposure and Zinc Deficiency on Steroid Metabolism and Growth.Nuttall, Johnathan R; Kucera, Heidi R; Supasai, Suangsuda; Gaikwad, Nilesh W; Oteiza, Patricia IToxicological sciences : an official journal of the Society of Toxicology.2017 04 01;28115639
Inference of cancer mechanisms through computational systems analysis.Qi, Zhen; Voit, Eberhard OMolecular bioSystems.2017 Feb 28;28112324
Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase.Mafu, Sibongile; Karunanithi, Prema Sambandaswami; Palazzo, Teresa Ann; Harrod, Bronwyn Lee; Rodriguez, Selina Marakana; Mollhoff, Iris Natalie; O'Brien, Terrence Edward; Tong, Shen; Fiehn, Oliver; Tantillo, Dean J; Bohlmann, Jörg; Zerbe, PhilippProceedings of the National Academy of Sciences of the United States of America.2017 Jan 31;28096378
New-generation mass spectrometry expands the toolbox of cell and developmental biology.Lombard-Banek, Camille; Portero, Erika P; Onjiko, Rosemary M; Nemes, PeterGenesis (New York, N.Y. : 2000).2017 Jan;28095647
LipidPioneer : A Comprehensive User-Generated Exact Mass Template for Lipidomics.Ulmer, Candice Z; Koelmel, Jeremy P; Ragland, Jared M; Garrett, Timothy J; Bowden, John AJournal of the American Society for Mass Spectrometry.2017 Mar;28074328
The Changing Epidemiology of Autism Spectrum Disorders.Lyall, Kristen; Croen, Lisa; Daniels, Julie; Fallin, M Daniele; Ladd-Acosta, Christine; Lee, Brian K; Park, Bo Y; Snyder, Nathaniel W; Schendel, Diana; Volk, Heather; Windham, Gayle C; Newschaffer, CraigAnnual review of public health.2017 03 20;28068486
Correction: Calcium Reduces Liver Injury in Mice on a High-Fat Diet: Alterations in Microbial and Bile Acid Profiles.Aslam, Muhammad Nadeem; Bassis, Christine M; Zhang, Li; Zaidi, Sameer; Varani, James; Bergin, Ingrid LPloS one.2017;28068422
Effect of a Soluble Epoxide Hydrolase Inhibitor, UC1728, on LPS-Induced Uveitis in the Rabbit.McLellan, Gillian J; Aktas, Zeynep; Hennes-Beean, Elizabeth; Kolb, Aaron W; Larsen, Inna V; Schmitz, Emily J; Clausius, Hilary R; Yang, Jun; Hwang, Sung Hee; Morisseau, Christophe; Inceoglu, Bora; Hammock, Bruce D; Brandt, Curtis RJournal of ocular biology.2016 Jan;28066796
Cefoperazone-treated Mouse Model of Clinically-relevant Clostridium difficile Strain R20291.Winston, Jenessa A; Thanissery, Rajani; Montgomery, Stephanie A; Theriot, Casey MJournal of visualized experiments : JoVE.2016 12 10;28060346
Glycosylation Signatures of Inflammation Identify Cardiovascular Risk: Some Glyc It Hot.Lawler, Patrick R; Mora, SamiaCirculation research.2016 Nov 11;28051777
Magic Angle Spinning NMR Metabolomics.Hu, Jian ZhiMetabolomics : open access.2016 Jun;28042496
Considerations when choosing a genetic model organism for metabolomics studies.Reed, Laura K; Baer, Charles F; Edison, Arthur SCurrent opinion in chemical biology.2017 Feb;28025166
Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET).Sumner, Lloyd W; Styczynski, Mark; McLean, John; Fiehn, Oliver; Jander, Georg; Liao, James; Sumner, Susan; Britz-McKibbin, Philip; Welti, Ruth; Jones, A Daniel; Dorrestein, Pieter C; Bearden, Dan; Kaddurah-Daouk, RimaMetabolomics : Official journal of the Metabolomic Society.2015 Feb;28018159
1,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathway.Vences-Guzmán, Miguel Ángel; Paula Goetting-Minesky, M; Guan, Ziqiang; Castillo-Ramirez, Santiago; Córdoba-Castro, Luz América; López-Lara, Isabel M; Geiger, Otto; Sohlenkamp, Christian; Christopher Fenno, JMolecular microbiology.2017 Mar;28009086
Early PQQ supplementation has persistent long-term protective effects on developmental programming of hepatic lipotoxicity and inflammation in obese mice.Jonscher, Karen R; Stewart, Michael S; Alfonso-Garcia, Alba; DeFelice, Brian C; Wang, Xiaoxin X; Luo, Yuhuan; Levi, Moshe; Heerwagen, Margaret J R; Janssen, Rachel C; de la Houssaye, Becky A; Wiitala, Ellen; Florey, Garrett; Jonscher, Raleigh L; Potma, Eric O; Fiehn, Oliver; Friedman, Jacob EFASEB journal : official publication of the Federation of American Societies for Experimental Biology.2017 Apr;28007783
Neonatal Metabolomic Profiles Related to Prenatal Arsenic Exposure.Laine, Jessica E; Bailey, Kathryn A; Olshan, Andrew F; Smeester, Lisa; Drobná, Zuzana; Stýblo, Miroslav; Douillet, Christelle; García-Vargas, Gonzalo; Rubio-Andrade, Marisela; Pathmasiri, Wimal; McRitchie, Susan; Sumner, Susan J; Fry, Rebecca CEnvironmental science & technology.2017 Jan 03;27997141
The importance of accurately correcting for the natural abundance of stable isotopes.Midani, Firas S; Wynn, Michelle L; Schnell, SantiagoAnalytical biochemistry.2017 Mar 01;27989585
Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators.Flitter, Becca A; Hvorecny, Kelli L; Ono, Emiko; Eddens, Taylor; Yang, Jun; Kwak, Daniel H; Bahl, Christopher D; Hampton, Thomas H; Morisseau, Christophe; Hammock, Bruce D; Liu, Xinyu; Lee, Janet S; Kolls, Jay K; Levy, Bruce D; Madden, Dean R; Bomberger, Jennifer MProceedings of the National Academy of Sciences of the United States of America.2017 Jan 03;27980032
Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis.Kind, Tobias; Cho, Eunho; Park, Taeeun D; Deng, Nan; Liu, Zhenqiu; Lee, Tack; Fiehn, Oliver; Kim, JayoungScientific reports.2016 Dec 15;27976711
Tandem Mass Spectrometry in Combination with Product Ion Mobility for the Identification of Phospholipids.Berry, Karin A Zemski; Barkley, Robert M; Berry, Joseph J; Hankin, Joseph A; Hoyes, Emmy; Brown, Jeffery M; Murphy, Robert CAnalytical chemistry.2017 Jan 03;27958700
Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.Kyle, Jennifer E; Casey, Cameron P; Stratton, Kelly G; Zink, Erika M; Kim, Young-Mo; Zheng, Xueyun; Monroe, Matthew E; Weitz, Karl K; Bloodsworth, Kent J; Orton, Daniel J; Ibrahim, Yehia M; Moore, Ronald J; Lee, Christine G; Pedersen, Catherine; Orwoll, Eric; Smith, Richard D; Burnum-Johnson, Kristin E; Baker, Erin SRapid communications in mass spectrometry : RCM.2017 Mar 15;27958645
Ketogenesis contributes to intestinal cell differentiation.Wang, Qingding; Zhou, Yuning; Rychahou, Piotr; Fan, Teresa W-M; Lane, Andrew N; Weiss, Heidi L; Evers, B MarkCell death and differentiation.2017 Mar;27935584
Precast Gelatin-Based Molds for Tissue Embedding Compatible with Mass Spectrometry Imaging.Gill, Emily L; Yost, Richard A; Vedam-Mai, Vinata; Garrett, Timothy JAnalytical chemistry.2017 01 03;27935272
Glioblastoma therapy can be augmented by targeting IDH1-mediated NADPH biosynthesis.Wahl, Daniel R; Dresser, Joseph; Wilder-Romans, Kari; Parsels, Joshua D; Zhao, Shuang G; Davis, Mary; Zhao, Lili; Kachman, Maureen; Wernisch, Stefanie; Burant, Charles F; Morgan, Meredith A; Feng, Felix Y; Speers, Corey; Lyssiotis, Costas A; Lawrence, TheCancer research.;27923831
Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go?Metz, Thomas O; Baker, Erin S; Schymanski, Emma L; Renslow, Ryan S; Thomas, Dennis G; Causon, Tim J; Webb, Ian K; Hann, Stephan; Smith, Richard D; Teeguarden, Justin GBioanalysis.2017 Jan;27921453
Adipose Fatty Acid Binding Protein Promotes Saturated Fatty Acid-Induced Macrophage Cell Death through Enhancing Ceramide Production.Zhang, Yuwen; Rao, Enyu; Zeng, Jun; Hao, Jiaqing; Sun, Yanwen; Liu, Shujun; Sauter, Edward R; Bernlohr, David A; Cleary, Margot P; Suttles, Jill; Li, BingJournal of immunology (Baltimore, Md. : 1950).2017 Jan 15;27920274
Are We Ready to Use the Omics Strategies for Precision Medicine?Kim, JayoungInternational neurourology journal.2016 Nov;27915470
Experimental and Theoretical Investigation of Sodiated Multimers of Steroid Epimers with Ion Mobility-Mass Spectrometry.Chouinard, Christopher D; Cruzeiro, Vinícius Wilian D; Roitberg, Adrian E; Yost, Richard AJournal of the American Society for Mass Spectrometry.2017 Feb;27914014
A Targeted Metabolomics Assay to Measure Eight Purines in the Diet of Common Bottlenose Dolphins, Tursiops truncatus.Ardente, A J; Garrett, T J; Wells, R S; Walsh, M; Smith, C R; Colee, J; Hill, R CJournal of chromatography & separation techniques.;27904786
Mass spectrometry analysis shows the biosynthetic pathways supported by pyruvate carboxylase in highly invasive breast cancer cells.Phannasil, Phatchariya; Ansari, Israr-Ul H; El Azzouny, Mahmoud; Longacre, Melissa J; Rattanapornsompong, Khanti; Burant, Charles F; MacDonald, Michael J; Jitrapakdee, SarawutBiochimica et biophysica acta.2017 Feb;27890529
Characterization of an immobilized enzyme reactor for on-line protein digestion.Moore, Stephanie; Hess, Stephanie; Jorgenson, JamesJournal of chromatography. A.2016 Dec 09;27876348
Sweat lipid mediator profiling: a noninvasive approach for cutaneous research.Agrawal, Karan; Hassoun, Lauren A; Foolad, Negar; Pedersen, Theresa L; Sivamani, Raja K; Newman, John WJournal of lipid research.2017 Jan;27875258
Natural products as mediators of disease.Garg, Neha; Luzzatto-Knaan, Tal; Melnik, Alexey V; Caraballo-Rodríguez, Andrés Mauricio; Floros, Dimitrios J; Petras, Daniel; Gregor, Rachel; Dorrestein, Pieter C; Phelan, Vanessa VNatural product reports.2017 Feb 01;27874907
Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity.Ma, Siming; Upneja, Akhil; Galecki, Andrzej; Tsai, Yi-Miau; Burant, Charles F; Raskind, Sasha; Zhang, Quanwei; Zhang, Zhengdong D; Seluanov, Andrei; Gorbunova, Vera; Clish, Clary B; Miller, Richard A; Gladyshev, Vadim NeLife.2016 Nov 22;27874830
Differences in testosterone and its precursors by sex of the offspring in meconium.Frey, Alexander J; Park, Bo Y; Schriver, Emily R; Feldman, Daniel R; Parry, Samuel; Croen, Lisa A; Fallin, Daniele M; Hertz-Picciotto, Irva; Newschaffer, Craig J; Snyder, Nathaniel WThe Journal of steroid biochemistry and molecular biology.;27871978
Calcium Reduces Liver Injury in Mice on a High-Fat Diet: Alterations in Microbial and Bile Acid Profiles.Nadeem Aslam, Muhammad; Bassis, Christine M; Zhang, Li; Zaidi, Sameer; Varani, James; Bergin, Ingrid LPloS one.2016;27851786
Differential Regulation of Macrophage Glucose Metabolism by Macrophage Colony-stimulating Factor and Granulocyte-Macrophage Colony-stimulating Factor: Implications for (18)F FDG PET Imaging of Vessel Wall Inflammation.Tavakoli, Sina; Short, John D; Downs, Kevin; Nguyen, Huynh Nga; Lai, Yanlai; Zhang, Wei; Jerabek, Paul; Goins, Beth; Sadeghi, Mehran M; Asmis, RetoRadiology.2017 Apr;27849433
Confounding factors in identification of disease-resilient individuals.Rosenblatt, David S; Watkins, David; Rajabi, Farrah; Levy, Harvey LNature biotechnology.2016 11 08;27824855
SPLASH, a hashed identifier for mass spectra.Wohlgemuth, Gert; Mehta, Sajjan S; Mejia, Ramon F; Neumann, Steffen; Pedrosa, Diego; Pluskal, Tomá?; Schymanski, Emma L; Willighagen, Egon L; Wilson, Michael; Wishart, David S; Arita, Masanori; Dorrestein, Pieter C; Bandeira, Nuno; Wang, Mingxun; Schulze, Tobias; Salek, Reza M; Steinbeck, Christoph; Nainala, Venkata Chandrasekhar; Mistrik, Robert; Nishioka, Takaaki; Fiehn, OliverNature biotechnology.2016 Nov 08;27824832
Bipolar disorder moderates associations between linoleic acid and markers of inflammation.Chang, Ya-Wen; Assari, Shervin; Prossin, Alan R; Stertz, Laura; McInnis, Melvin G; Evans, Simon JJournal of psychiatric research.2017 Feb;27821270
Dual Inhibition of MEK and PI3K/Akt Rescues Cancer Cachexia through both Tumor-Extrinsic and -Intrinsic Activities.Talbert, Erin E; Yang, Jennifer; Mace, Thomas A; Farren, Matthew R; Farris, Alton B; Young, Gregory S; Elnaggar, Omar; Che, Zheng; Timmers, Cynthia D; Rajasekera, Priyani; Maskarinec, Jennifer M; Bloomston, Mark; Bekaii-Saab, Tanios; Guttridge, Denis C; LMolecular cancer therapeutics.2017 Feb;27811010
The Modulating Effects of Cardiac Resynchronization Therapy on Myocardial Metabolism in Heart Failure.Xu, Yi-Zhou; Chen, Chao-Feng; Chen, Bin; Gao, Xiao-Fei; Hua, Wei; Cha, Yong-Mei; Dzeja, Petras PPacing and clinical electrophysiology : PACE.2016 Dec;27807872
Nutrient Transporter Expression in the Jejunum in Relation to Body Mass Index in Patients Undergoing Bariatric Surgery.Irving, Brian A; Wood, G Craig; Bennotti, Peter N; Babu, Ellappan; Deshpande, Abhishek; Lent, Michelle R; Petrick, Anthony; Gabrielsen, Jon; Strodel, William; Gerhard, Glenn S; Still, Christopher D; Ganapathy, Vadivel; Rolston, David D KNutrients.2016 Oct 29;27801863
Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival.Fahrmann, Johannes F; Grapov, Dmitry; Phinney, Brett S; Stroble, Carol; DeFelice, Brian C; Rom, William; Gandara, David R; Zhang, Yanhong; Fiehn, Oliver; Pass, Harvey; Miyamoto, SuzanneClinical proteomics.2016;27799870
Interleukin 10 Restores Gastric Emptying, Electrical Activity, and Interstitial Cells of Cajal Networks in Diabetic Mice.Choi, Kyoung Moo; Gibbons, Simon J; Sha, Lei; Beyder, Arthur; Verhulst, Pieter-Jan; Cipriani, Gianluca; Phillips, Jessica E; Bauer, Anthony J; Ordog, Tamas; Camp, Jon J; Ge, Xin; Bharucha, Adil E; Linden, David R; Szurszewski, Joseph H; Kashyap, Purna C; Farrugia, GianricoCellular and molecular gastroenterology and hepatology.2016 Jul;27795979
Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats.Barupal, Dinesh K; Pinkerton, Kent E; Hood, Carol; Kind, Tobias; Fiehn, OliverChemical research in toxicology.2016 11 21;27788581
Use of Ion Chromatography/Mass Spectrometry for Targeted Metabolite Profiling of Polar Organic Acids.Analytical chemistry.2016 12 06;27782384
Monitoring cell secretions on microfluidic chips using solid-phase extraction with mass spectrometry.Dugan, Colleen E; Grinias, James P; Parlee, Sebastian D; El-Azzouny, Mahmoud; Evans, Charles R; Kennedy, Robert TAnalytical and bioanalytical chemistry.2016 Oct 19;27761614
Transcription Factor ZBP-89 Drives a Feedforward Loop of ?-Catenin Expression in Colorectal Cancer.Essien, Bryan E; Sundaresan, Sinju; Ocadiz-Ruiz, Ramon; Chavis, Aaron; Tsao, Amy C; Tessier, Arthur J; Hayes, Michael M; Photenhauer, Amanda; Saqui-Salces, Milena; Kang, Anthony J; Shah, Yatrik M; Gy?rffy, Balazs; Merchant, Juanita LCancer research.2016 Dec 01;27758879
Validation of highly sensitive simultaneous targeted and untargeted analysis of keto-steroids by Girard P derivatization and stable isotope dilution-liquid chromatography-high resolution mass spectrometry.Frey, Alexander J; Wang, Qingqing; Busch, Christine; Feldman, Daniel; Bottalico, Lisa; Mesaros, Clementina A; Blair, Ian A; Vachani, Anil; Snyder, Nathaniel WSteroids.2016 Oct 13;27743906
An ?-3-enriched diet alone does not attenuate CCl4-induced hepatic fibrosis.Harris, Todd R; Kodani, Sean; Yang, Jun; Imai, Denise M; Hammock, Bruce DThe Journal of nutritional biochemistry.2016 Dec;27732914
Acylcarnitines as markers of exercise-associated fuel partitioning, xenometabolism, and potential signals to muscle afferent neurons.Zhang, Jie; Light, Alan R; Hoppel, Charles L; Campbell, Caitlin; Chandler, Carol J; Burnett, Dustin J; Souza, Elaine C; Casazza, Gretchen A; Hughen, Ronald W; Keim, Nancy L; Newman, John W; Hunter, Gary R; Fernandez, Jose R; Garvey, W Timothy; Harper, Mary-Ellen; Fiehn, Oliver; Adams, Sean HExperimental physiology.2017 Jan 01;27730694
Inaccurate quantitation of palmitate in metabolomics and isotope tracer studies due to plastics.Yao, Cong-Hui; Liu, Gao-Yuan; Yang, Kui; Gross, Richard W; Patti, Gary JMetabolomics : Official journal of the Metabolomic Society.2016 Sep;27721678
Lipid metabolism is associated with developmental epigenetic programming.Marchlewicz, Elizabeth H; Dolinoy, Dana C; Tang, Lu; Milewski, Samantha; Jones, Tamara R; Goodrich, Jaclyn M; Soni, Tanu; Domino, Steven E; Song, Peter X K; F Burant, Charles; Padmanabhan, VasanthaScientific reports.2016 Oct 07;27713555
MyoD Regulates Skeletal Muscle Oxidative Metabolism Cooperatively with Alternative NF-?B.Shintaku, Jonathan; Peterson, Jennifer M; Talbert, Erin E; Gu, Jin-Mo; Ladner, Katherine J; Williams, Dustin R; Mousavi, Kambiz; Wang, Ruoning; Sartorelli, Vittorio; Guttridge, Denis CCell reports.2016 Oct 04;27705798
Development of a 45kpsi ultrahigh pressure liquid chromatography instrument for gradient separations of peptides using long microcapillary columns and sub-2?m particles.Grinias, Kaitlin M; Godinho, Justin M; Franklin, Edward G; Stobaugh, Jordan T; Jorgenson, James WJournal of chromatography. A.2016 Oct 21;27702615
Tissue-specific metabolic reprogramming drives nutrient flux in diabetic complications.Sas, Kelli M; Kayampilly, Pradeep; Byun, Jaeman; Nair, Viji; Hinder, Lucy M; Hur, Junguk; Zhang, Hongyu; Lin, Chengmao; Qi, Nathan R; Michailidis, George; Groop, Per-Henrik; Nelson, Robert G; Darshi, Manjula; Sharma, Kumar; Schelling, Jeffrey R; Sedor, JoJCI insight.2016 Sep 22;27699244
The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates.Khadempour, Lily; Burnum-Johnson, Kristin E; Baker, Erin S; Nicora, Carrie D; Webb-Robertson, Bobbie-Jo M; White 3rd, Richard A; Monroe, Matthew E; Huang, Eric L; Smith, Richard D; Currie, Cameron RMolecular ecology.2016 Nov;27696597
Disposition of intravenously or orally administered silver nanoparticles in pregnant rats and the effect on the biochemical profile in urine.Fennell, Timothy R; Mortensen, Ninell P; Black, Sherry R; Snyder, Rodney W; Levine, Keith E; Poitras, Eric; Harrington, James M; Wingard, Christopher J; Holland, Nathan A; Pathmasiri, Wimal; Sumner, Susan C JJournal of applied toxicology : JAT.2017 May;27696470
Tandem Mass Spectrometry of Novel Ether-Linked Phospholipid Analogs of Anionic Pulmonary Surfactant Phospholipids.Fickes, Rachel; Voelker, Dennis R; Berry, Karin Zemski; Murphy, Robert CRapid communications in mass spectrometry : RCM.2016 Sep 30;27689848
Knockdown of ATP citrate lyase in pancreatic beta cells does not inhibit insulin secretion or glucose flux and implicates the acetoacetate pathway in insulin secretion.El Azzouny, Mahmoud; Longacre, Melissa J; Ansari, Israr-Ul H; Kennedy, Robert T; Burant, Charles F; MacDonald, Michael JMolecular metabolism.2016 Oct;27689010
Rescue of Metabolic Alterations in AR113Q Skeletal Muscle by Peripheral Androgen Receptor Gene Silencing.Giorgetti, Elisa; Yu, Zhigang; Chua, Jason P; Shimamura, Ryosuke; Zhao, Lili; Zhu, Fan; Venneti, Sriram; Pennuto, Maria; Guan, Yuanfang; Hung, Gene; Lieberman, Andrew PCell reports.;27681426
Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.Burnum-Johnson, Kristin E; Nie, Song; Casey, Cameron P; Monroe, Matthew E; Orton, Daniel J; Ibrahim, Yehia M; Gritsenko, Marina A; Clauss, Therese R W; Shukla, Anil K; Moore, Ronald J; Purvine, Samuel O; Shi, Tujin; Qian, Weijun; Liu, Tao; Baker, Erin S; Smith, Richard DMolecular & cellular proteomics : MCP.;27670688
Expression of the aryl hydrocarbon receptor contributes to the establishment of intestinal microbial community structure in mice.Murray, Iain A; Nichols, Robert G; Zhang, Limin; Patterson, Andrew D; Perdew, Gary HScientific reports.2016 Sep 23;27659481
Eulogy for the Metabolic Clinical Investigator?Vella, Adrian; Jensen, Michael D; Nair, K SreekumaranDiabetes.2016 Oct;27659223
Metabolomics enables precision medicine: ''A White Paper, Community Perspective''.Beger, Richard D; Dunn, Warwick; Schmidt, Michael A; Gross, Steven S; Kirwan, Jennifer A; Cascante, Marta; Brennan, Lorraine; Wishart, David S; Oresic, Matej; Hankemeier, Thomas; Broadhurst, David I; Lane, Andrew N; Suhre, Karsten; Kastenmüller, Gabi; Sumner, Susan J; Thiele, Ines; Fiehn, Oliver; Kaddurah-Daouk, Rima; for ?Precision Medicine and Pharmacometabolomics Task Group?-Metabolomics Society InitiativeMetabolomics : Official journal of the Metabolomic Society.2016;27642271
An Intestinal Microbiota-Farnesoid X Receptor Axis Modulates Metabolic Disease.Gonzalez, Frank J; Jiang, Changtao; Patterson, Andrew DGastroenterology.2016 Nov;27639801
Lactate metabolism is associated with mammalian mitochondria.Chen, Ying-Jr; Mahieu, Nathaniel G; Huang, Xiaojing; Singh, Manmilan; Crawford, Peter A; Johnson, Stephen L; Gross, Richard W; Schaefer, Jacob; Patti, Gary JNature chemical biology.2016 Sep 12;27618187
Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses.Zheng, Xueyun; Zhang, Xing; Schocker, Nathaniel S; Renslow, Ryan S; Orton, Daniel J; Khamsi, Jamal; Ashmus, Roger A; Almeida, Igor C; Tang, Keqi; Costello, Catherine E; Smith, Richard D; Michael, Katja; Baker, Erin SAnalytical and bioanalytical chemistry.2017 Jan;27604268
Blood type biochemistry and human disease.Ewald, D Rose; Sumner, Susan C JWiley interdisciplinary reviews. Systems biology and medicine.2016 Sep 7;27599872
Neonatal NET-inhibitory factor and related peptides inhibit neutrophil extracellular trap formation.Yost, Christian C; Schwertz, Hansjörg; Cody, Mark J; Wallace, Jared A; Campbell, Robert A; Vieira-de-Abreu, Adriana; Araujo, Claudia V; Schubert, Sebastian; Harris, Estelle S; Rowley, Jesse W; Rondina, Matthew T; Fulcher, James M; Koening, Curry L; WeyricThe Journal of clinical investigation.2016 Oct 03;27599294
Bacterial nutrient foraging in a mouse model of enteral nutrient deprivation: insight into the gut origin of sepsis.Ralls, Matthew W; Demehri, Farokh R; Feng, Yongjia; Raskind, Sasha; Ruan, Chunhai; Schintlmeister, Arno; Loy, Alexander; Hanson, Buck; Berry, David; Burant, Charles F; Teitelbaum, Daniel HAmerican journal of physiology. Gastrointestinal and liver physiology.2016 10 01;27586649
Metabolic profiling of cholesterol and sex steroid hormones to monitor urological diseases.Moon, Ju-Yeun; Choi, Man Ho; Kim, JayoungEndocrine-related cancer.2016 10;27580660
The future of NMR-based metabolomics.Markley, John L; Brüschweiler, Rafael; Edison, Arthur S; Eghbalnia, Hamid R; Powers, Robert; Raftery, Daniel; Wishart, David SCurrent opinion in biotechnology.2016 Aug 27;27580257
Mass spectral fragmentation of trimethylsilylated small molecules.Lai, Zijuan; Fiehn, OliverMass spectrometry reviews.2018 05;27580014
Knowns and unknowns in metabolomics identified by multidimensional NMR and hybrid MS/NMR methods.Bingol, Kerem; Brüschweiler, RafaelCurrent opinion in biotechnology.2017 Feb;27552705
Distinctly perturbed metabolic networks underlie differential tumor tissue damages induced by immune modulator ?-glucan in a two-case ex vivo non-small-cell lung cancer study.Fan, Teresa W-M; Warmoes, Marc O; Sun, Qiushi; Song, Huan; Turchan-Cholewo, Jadwiga; Martin, Jeremiah T; Mahan, Angela; Higashi, Richard M; Lane, Andrew NCold Spring Harbor molecular case studies.2016 Jul;27551682
Insulin does not stimulate muscle protein synthesis during increased plasma branched-chain amino acids alone but still decreases whole body proteolysis in humans.Everman, Sarah; Meyer, Christian; Tran, Lee; Hoffman, Nyssa; Carroll, Chad C; Dedmon, William L; Katsanos, Christos SAmerican journal of physiology. Endocrinology and metabolism.2016 10 01;27530230
Insulin and IGF-1 receptors regulate FoxO-mediated signaling in muscle proteostasis.O'Neill, Brian T; Lee, Kevin Y; Klaus, Katherine; Softic, Samir; Krumpoch, Megan T; Fentz, Joachim; Stanford, Kristin I; Robinson, Matthew M; Cai, Weikang; Kleinridders, Andre; Pereira, Renata O; Hirshman, Michael F; Abel, E Dale; Accili, Domenico; Goodyear, Laurie J; Nair, K Sreekumaran; Kahn, C RonaldThe Journal of clinical investigation.2016 Sep 1;27525440
Systems Analysis of the Complement-Induced Priming Phase of Liver Regeneration.Min, Jun S; DeAngelis, Robert A; Reis, Edimara S; Gupta, Shakti; Maurya, Mano R; Evans, Charles; Das, Arun; Burant, Charles; Lambris, John D; Subramaniam, ShankarJournal of immunology (Baltimore, Md. : 1950).2016 Sep 15;27511733
Pancreatic stellate cells support tumour metabolism through autophagic alanine secretion.Sousa, Cristovão M; Biancur, Douglas E; Wang, Xiaoxu; Halbrook, Christopher J; Sherman, Mara H; Zhang, Li; Kremer, Daniel; Hwang, Rosa F; Witkiewicz, Agnes K; Ying, Haoqiang; Asara, John M; Evans, Ronald M; Cantley, Lewis C; Lyssiotis, Costas A; Kimmelman, Alec CNature.2016 Aug 25;27509858
Functional and proteomic alterations of plasma high density lipoproteins in type 1 diabetes mellitus.Manjunatha, Shankarappa; Distelmaier, Klaus; Dasari, Surendra; Carter, Rickey E; Kudva, Yogish C; Nair, K SreekumaranMetabolism: clinical and experimental.2016 09;27506748
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.Wang, Mingxun; Carver, Jeremy J; Phelan, Vanessa V; Sanchez, Laura M; Garg, Neha; Peng, Yao; Nguyen, Don Duy; Watrous, Jeramie; Kapono, Clifford A; Luzzatto-Knaan, Tal; Porto, Carla; Bouslimani, Amina; Melnik, Alexey V; Meehan, Michael J; Liu, Wei-Ting; Crüsemann, Max; Boudreau, Paul D; Esquenazi, Eduardo; Sandoval-Calderón, Mario; Kersten, Roland D; Pace, Laura A; Quinn, Robert A; Duncan, Katherine R; Hsu, Cheng-Chih; Floros, Dimitrios J; Gavilan, Ronnie G; Kleigrewe, Karin; Northen, Trent; Dutton, Rachel J; Parrot, Delphine; Carlson, Erin E; Aigle, Bertrand; Michelsen, Charlotte F; Jelsbak, Lars; Sohlenkamp, Christian; Pevzner, Pavel; Edlund, Anna; McLean, Jeffrey; Piel, Jörn; Murphy, Brian T; Gerwick, Lena; Liaw, Chih-Chuang; Yang, Yu-Liang; Humpf, Hans-Ulrich; Maansson, Maria; Keyzers, Robert A; Sims, Amy C; Johnson, Andrew R; Sidebottom, Ashley M; Sedio, Brian E; Klitgaard, Andreas; Larson, Charles B; Boya P, Cristopher A; Torres-Mendoza, Daniel; Gonzalez, David J; Silva, Denise B; Marques, Lucas M; Demarque, Daniel P; Pociute, Egle; O'Neill, Ellis C; Briand, Enora; Helfrich, Eric J N; Granatosky, Eve A; Glukhov, Evgenia; Ryffel, Florian; Houson, Hailey; Mohimani, Hosein; Kharbush, Jenan J; Zeng, Yi; Vorholt, Julia A; Kurita, Kenji L; Charusanti, Pep; McPhail, Kerry L; Nielsen, Kristian Fog; Vuong, Lisa; Elfeki, Maryam; Traxler, Matthew F; Engene, Niclas; Koyama, Nobuhiro; Vining, Oliver B; Baric, Ralph; Silva, Ricardo R; Mascuch, Samantha J; Tomasi, Sophie; Jenkins, Stefan; Macherla, Venkat; Hoffman, Thomas; Agarwal, Vinayak; Williams, Philip G; Dai, Jingqui; Neupane, Ram; Gurr, Joshua; Rodríguez, Andrés M C; Lamsa, Anne; Zhang, Chen; Dorrestein, Kathleen; Duggan, Brendan M; Almaliti, Jehad; Allard, Pierre-Marie; Phapale, Prasad; Nothias, Louis-Felix; Alexandrov, Theodore; Litaudon, Marc; Wolfender, Jean-Luc; Kyle, Jennifer E; Metz, Thomas O; Peryea, Tyler; Nguyen, Dac-Trung; VanLeer, Danielle; Shinn, Paul; Jadhav, Ajit; Müller, Rolf; Waters, Katrina M; Shi, Wenyuan; Liu, Xueting; Zhang, Lixin; Knight, Rob; Jensen, Paul R; Palsson, Bernhard Ø; Pogliano, Kit; Linington, Roger G; Gutiérrez, Marcelino; Lopes, Norberto P; Gerwick, William H; Moore, Bradley S; Dorrestein, Pieter C; Bandeira, NunoNature biotechnology.2016 Aug 09;27504778
Implementation of high slurry concentration and sonication to pack high-efficiency, meter-long capillary ultrahigh pressure liquid chromatography columns.Godinho, Justin M; Reising, Arved E; Tallarek, Ulrich; Jorgenson, James WJournal of chromatography. A.2016 Sep 02;27499108
Analysis of Aerobic Respiration in Intact Skeletal Muscle Tissue by Microplate-Based Respirometry.Shintaku, Jonathan; Guttridge, Denis CMethods in molecular biology (Clifton, N.J.).2016;27492183
Preclinical models for interrogating drug action in human cancers using Stable Isotope Resolved Metabolomics (SIRM).Lane, Andrew N; Higashi, Richard M; Fan, Teresa W-MMetabolomics : Official journal of the Metabolomic Society.2016 Jul;27489532
Muscle-specific loss of Bmal1 leads to disrupted tissue glucose metabolism and systemic glucose homeostasis.Harfmann, Brianna D; Schroder, Elizabeth A; Kachman, Maureen T; Hodge, Brian A; Zhang, Xiping; Esser, Karyn ASkeletal muscle.2016;27486508
Fatty Acid Oxidation Mediated by Acyl-CoA Synthetase Long Chain 3 Is Required for Mutant KRAS Lung Tumorigenesis.Padanad, Mahesh S; Konstantinidou, Georgia; Venkateswaran, Niranjan; Melegari, Margherita; Rindhe, Smita; Mitsche, Matthew; Yang, Chendong; Batten, Kimberly; Huffman, Kenneth E; Liu, Jingwen; Tang, Ximing; Rodriguez-Canales, Jaime; Kalhor, Neda; Shay, Jerry W; Minna, John D; McDonald, Jeffrey; Wistuba, Ignacio I; DeBerardinis, Ralph J; Scaglioni, Pier PaoloCell reports.2016 Aug 9;27477280
Circulating levels of endocannabinoids and oxylipins altered by dietary lipids in older women are likely associated with previously identified gene targets.Watkins, Bruce A; Kim, Jeffrey; Kenny, Anne; Pedersen, Theresa L; Pappan, Kirk L; Newman, John WBiochimica et biophysica acta.2016 11;27452639
Metabolomics Analysis of Hormone-Responsive and Triple-Negative Breast Cancer Cell Responses to Paclitaxel Identify Key Metabolic Differences.Stewart, Delisha A; Winnike, Jason H; McRitchie, Susan L; Clark, Robert F; Pathmasiri, Wimal W; Sumner, Susan JJournal of proteome research.2016 Sep 2;27447733
Aptamer-Based Proteomic Profiling Reveals Novel Candidate Biomarkers and Pathways in Cardiovascular Disease.Ngo, Debby; Sinha, Sumita; Shen, Dongxiao; Kuhn, Eric W; Keyes, Michelle J; Shi, Xu; Benson, Mark D; O'Sullivan, John F; Keshishian, Hasmik; Farrell, Laurie A; Fifer, Michael A; Vasan, Ramachandran S; Sabatine, Marc S; Larson, Martin G; Carr, Steven A; Wang, Thomas J; Gerszten, Robert ECirculation.2016 Jul 26;27444932
Release of skeletal muscle peptide fragments identifies individual proteins degraded during insulin deprivation in type 1 diabetic humans and mice.Robinson, Matthew M; Dasari, Surendra; Karakelides, Helen; Bergen 3rd, H Robert; Nair, K SreekumaranAmerican journal of physiology. Endocrinology and metabolism.2016 Sep 01;27436610
Preterm neonatal urinary renal developmental and acute kidney injury metabolomic profiling: an exploratory study.Mercier, Kelly; McRitchie, Susan; Pathmasiri, Wimal; Novokhatny, Andrew; Koralkar, Rajesh; Askenazi, David; Brophy, Patrick D; Sumner, SusanPediatric nephrology (Berlin, Germany).2016 Jul 19;27435284
Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.Barnes, Stephen; Benton, H Paul; Casazza, Krista; Cooper, Sara J; Cui, Xiangqin; Du, Xiuxia; Engler, Jeffrey; Kabarowski, Janusz H; Li, Shuzhao; Pathmasiri, Wimal; Prasain, Jeevan K; Renfrow, Matthew B; Tiwari, Hemant KJournal of mass spectrometry : JMS.2016 Jul;27434804
Perinatal triphenyl phosphate exposure accelerates type 2 diabetes onset and increases adipose accumulation in UCD-type 2 diabetes mellitus rats.Green, Adrian J; Graham, James L; Gonzalez, Eduardo A; La Frano, Michael R; Petropoulou, Syrago-Styliani E; Park, June-Soo; Newman, John W; Stanhope, Kimber L; Havel, Peter J; La Merrill, Michele AReproductive toxicology (Elmsford, N.Y.).2016 Jul 12;27421578
Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software.Tsugawa, Hiroshi; Kind, Tobias; Nakabayashi, Ryo; Yukihira, Daichi; Tanaka, Wataru; Cajka, Tomas; Saito, Kazuki; Fiehn, Oliver; Arita, MasanoriAnalytical chemistry.2016 Aug 16;27419259
Mitochondrial Pyruvate Import Promotes Long-Term Survival of Antibody-Secreting Plasma Cells.Lam, Wing Y; Becker, Amy M; Kennerly, Krista M; Wong, Rachel; Curtis, Jonathan D; Llufrio, Elizabeth M; McCommis, Kyle S; Fahrmann, Johannes; Pizzato, Hannah A; Nunley, Ryan M; Lee, Jieun; Wolfgang, Michael J; Patti, Gary J; Finck, Brian N; Pearce, Erika L; Bhattacharya, DeeptaImmunity.2016 Jul 19;27396958
Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling.Arabyan, Narine; Park, Dayoung; Foutouhi, Soraya; Weis, Allison M; Huang, Bihua C; Williams, Cynthia C; Desai, Prerak; Shah, Jigna; Jeannotte, Richard; Kong, Nguyet; Lebrilla, Carlito B; Weimer, Bart CScientific reports.2016 Jul 08;27389966
A Genetic Response Score for Hydrochlorothiazide Use: Insights From Genomics and Metabolomics Integration.Shahin, Mohamed H; Gong, Yan; McDonough, Caitrin W; Rotroff, Daniel M; Beitelshees, Amber L; Garrett, Timothy J; Gums, John G; Motsinger-Reif, Alison; Chapman, Arlene B; Turner, Stephen T; Boerwinkle, Eric; Frye, Reginald F; Fiehn, Oliver; Cooper-DeHoff, Rhonda M; Kaddurah-Daouk, Rima; Johnson, Julie AHypertension.2016 Jul 5;27381900
Evaluation of coverage, retention patterns, and selectivity of seven liquid chromatographic methods for metabolomics.Wernisch, Stefanie; Pennathur, SubramaniamAnalytical and bioanalytical chemistry.2016 Jul 1;27370688
Ingestion of the epoxide hydrolase inhibitor AUDA modulates immune responses of the mosquito, Culex quinquefasciatus during blood feeding.Xu, Jiawen; Morisseau, Christophe; Yang, Jun; Lee, Kin Sing Stephen; Kamita, Shizuo G; Hammock, Bruce DInsect biochemistry and molecular biology.2016 Jun 28;27369469
Network-based pathway enrichment analysis with incomplete network information.Ma, Jing; Shojaie, Ali; Michailidis, GeorgeBioinformatics (Oxford, England).2016 Oct 15;27357170
Association between plasma endocannabinoids and appetite in hemodialysis patients: A pilot study.Friedman, Allon N; Kim, Jeffrey; Kaiser, Shaun; Pedersen, Theresa L; Newman, John W; Watkins, Bruce ANutrition research (New York, N.Y.).2016 Jul;27333956
Metabolomics dataset of PPAR-pan treated rat liver.Ament, Zsuzsanna; West, James A; Stanley, Elizabeth; Li, Xuefei; Ashmore, Tom; Roberts, Lee D; Wright, Jayne; Nicholls, Andrew W; Griffin, Julian LData in brief.2016 Sep;27331087
Immune checkpoint blockade therapy for bladder cancer treatment.Kim, JayoungInvestigative and clinical urology.2016 Jun;27326412
Precision medicine of aneurysmal subarachnoid hemorrhage, vasospasm and delayed cerebral ischemia.Burrell, Christian; Avalon, Nicole E; Siegel, Jason; Pizzi, Michael; Dutta, Tumpa; Charlesworth, M Cristine; Freeman, William DExpert review of neurotherapeutics.2016 Nov;27314601
Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion.Faber, Franziska; Tran, Lisa; Byndloss, Mariana X; Lopez, Christopher A; Velazquez, Eric M; Kerrinnes, Tobias; Nuccio, Sean-Paul; Wangdi, Tamding; Fiehn, Oliver; Tsolis, Renée M; Bäumler, Andreas JNature.2016 Jun 30;27309805
NMR-based metabolomics reveals urinary metabolome modifications in female Sprague-Dawley rats by cranberry procyanidins.Liu, Haiyan; Tayyari, Fariba; Edison, Arthur S; Su, Zhihua; Gu, LiweiThe Journal of nutritional biochemistry.2016 Aug;27309592
BatMass: a Java Software Platform for LC-MS Data Visualization in Proteomics and Metabolomics.Avtonomov, Dmitry M; Raskind, Alexander; Nesvizhskii, Alexey IJournal of proteome research.2016 Aug 05;27306858
Maternal Early Pregnancy Serum Metabolomics Profile and Abnormal Vaginal Bleeding as Predictors of Placental Abruption: A Prospective Study.Gelaye, Bizu; Sumner, Susan J; McRitchie, Susan; Carlson, James E; Ananth, Cande V; Enquobahrie, Daniel A; Qiu, Chunfang; Sorensen, Tanya K; Williams, Michelle APloS one.2016;27300725
The Importance of the Biological Impact of Exposure to the Concept of the Exposome.Dennis, Kristine K; Auerbach, Scott S; Balshaw, David M; Cui, Yuxia; Fallin, Margaret Daniele; Smith, Martyn T; Spira, Avrum; Sumner, Susan; Miller, Gary WEnvironmental health perspectives.2016 Jun 3;27258438
Knockdown of triglyceride synthesis does not enhance palmitate lipotoxicity or prevent oleate-mediated rescue in rat hepatocytes.Leamy, Alexandra K; Hasenour, Clinton M; Egnatchik, Robert A; Trenary, Irina A; Yao, Cong-Hui; Patti, Gary J; Shiota, Masakazu; Young, Jamey DBiochimica et biophysica acta.2016 Sep;27249207
Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation.Noecker, Cecilia; Eng, Alexander; Srinivasan, Sujatha; Theriot, Casey M; Young, Vincent B; Jansson, Janet K; Fredricks, David N; Borenstein, ElhananmSystems.2016 Jan-Feb;27239563
Antibiotic-Induced Alterations of the Gut Microbiota Alter Secondary Bile Acid Production and Allow for Clostridium difficile Spore Germination and Outgrowth in the Large IntesTheriot, Casey M; Bowman, Alison A; Young, Vincent BmSphere.2016 Jan-Feb;27239562
Microfluidics meets metabolomics to reveal the impact of Campylobacter jejuni infection on biochemical pathways.Mortensen, Ninell P; Mercier, Kelly A; McRitchie, Susan; Cavallo, Tammy B; Pathmasiri, Wimal; Stewart, Delisha; Sumner, Susan JBiomedical microdevices.2016 Jun;27231016
Mass Spectrometric Collisional Activation and Product Ion Mobility of Human Serum Neutral Lipid Extracts.Hankin, Joseph A; Barkley, Robert M; Zemski-Berry, Karin; Deng, Yiming; Murphy, Robert CAnalytical chemistry.2016 Jun 21;27213895
Purinergic dysregulation in pulmonary hypertension.Visovatti, Scott H; Hyman, Matthew C; Goonewardena, Sascha N; Anyanwu, Anuli C; Kanthi, Yogendra; Robichaud, Patrick; Wang, Jintao; Petrovic-Djergovic, Danica; Rattan, Rahul; Burant, Charles F; Pinsky, David JAmerican journal of physiology. Heart and circulatory physiology.2016 Jul 1;27208163
Skeletal muscle fiber analysis by atmospheric pressure scanning microprobe matrix-assisted laser desorption/ionization mass spectrometric imaging at high mass and high spatial resolution.Tsai, Yu-Hsuan; Bhandari, Dhaka Ram; Garrett, Timothy J; Carter, Christy S; Spengler, Bernhard; Yost, Richard AProteomics.2016 Jun;27198224
Serum Cortisol-to-Cortisone Ratio and Blood Pressure in Severe Obesity before and after Weight Loss.Byrd, James B; Rothberg, Amy E; Chomic, Robert; Burant, Charles F; Brook, Robert D; Auchus, Richard JCardiorenal medicine.2015 Dec;27194991
An obligatory role for neurotensin in high-fat-diet-induced obesity.Li, Jing; Song, Jun; Zaytseva, Yekaterina Y; Liu, Yajuan; Rychahou, Piotr; Jiang, Kai; Starr, Marlene E; Kim, Ji Tae; Harris, Jennifer W; Yiannikouris, Frederique B; Katz, Wendy S; Nilsson, Peter M; Orho-Melander, Marju; Chen, Jing; Zhu, Haining; Fahrenholz, Timothy; Higashi, Richard M; Gao, Tianyan; Morris, Andrew J; Cassis, Lisa A; Fan, Teresa W-M; Weiss, Heidi L; Dobner, Paul R; Melander, Olle; Jia, Jianhang; Evers, B MarkNature2016 May 1927193687
Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.Kochen, Michael A; Chambers, Matthew C; Holman, Jay D; Nesvizhskii, Alexey I; Weintraub, Susan T; Belisle, John T; Islam, M Nurul; Griss, Johannes; Tabb, David LAnalytical chemistry2016 May 2427186799
Superior Glucose Tolerance and Metabolomic Profiles, Independent of Adiposity, in HIV-Infected Women Compared With Men on Antiretroviral Therapy.Koethe, John R; Jenkins, Cathy A; Petucci, Christopher; Culver, Jeffrey; Shepherd, Bryan E; Sterling, Timothy RMedicine.2016 May;27175676
Impact of microbial derived secondary bile acids on colonization resistance against Clostridium difficile in the gastrointestinal tract.Winston, Jenessa A; Theriot, Casey MAnaerobe2016 May 727163871
Molecular Mechanisms and New Treatment Paradigm for Atrial Fibrillation.Sirish, Padmini; Li, Ning; Timofeyev, Valeriy; Zhang, Xiao-Dong; Wang, Lianguo; Yang, Jun; Lee, Kin Sing Stephen; Bettaieb, Ahmed; Ma, Sin Mei; Lee, Jeong Han; Su, Demetria; Lau, Victor C; Myers, Richard E; Lieu, Deborah K; López, Javier E; Young, J Nilas; Yamoah, Ebenezer N; Haj, Fawaz; Ripplinger, Crystal M; Hammock, Bruce D; Chiamvimonvat, NipavanCirculation. Arrhythmia and electrophysiology.2016 May;27162031
Hyperglucagonemia Mitigates the Effect of Metformin on Glucose Production in Prediabetes.Konopka, Adam R; Esponda, Raul Ruiz; Robinson, Matthew M; Johnson, Matthew L; Carter, Rickey E; Schiavon, Michele; Cobelli, Claudio; Wondisford, Fredric E; Lanza, Ian R; Nair, K SreekumaranCell reports2016 May 1727160898
Stable Isotope Resolved Metabolomics Studies in Ex Vivo TIssue Slices.Fan, Teresa W-M; Lane, Andrew N; Higashi, Richard MBio-protocol2016 Feb 527158639
Plasma sphingolipid changes with autopsy-confirmed Lewy Body or Alzheimer's pathology.Savica, Rodolfo; Murray, Melissa E; Persson, Xuan-Mai; Kantarci, Kejal; Parisi, Joseph E; Dickson, Dennis W; Petersen, Ronald C; Ferman, Tanis J; Boeve, Bradley F; Mielke, Michelle MAlzheimer's & dementia (Amsterdam, Netherlands).2016;27152320
Bile acids promote diethylnitrosamine-induced hepatocellular carcinoma via increased inflammatory signaling.Sun, Lina; Beggs, Kevin; Borude, Prachi; Edwards, Genea; Bhushan, Bharat; Walesky, Chad; Roy, Nairita; Manley Jr, Michael W; Gunewardena, Sumedha; O'Neil, Maura; Li, Hua; Apte, UdayanAmerican journal of physiology. Gastrointestinal and liver physiology.2016 07 01;27151938
Differential Neuroproteomic and Systems Biology Analysis of Spinal Cord Injury.Moghieb, Ahmed; Bramlett, Helen M; Das, Jyotirmoy H; Yang, Zhihui; Selig, Tyler; Yost, Richard A; Wang, Michael S; Dietrich, W Dalton; Wang, Kevin K WMolecular & cellular proteomics : MCP.;27150525
Metabolic changes associated with methionine stress sensitivity in MDA-MB-468 breast cancer cells.Borrego, Stacey L; Fahrmann, Johannes; Datta, Rupsa; Stringari, Chiara; Grapov, Dmitry; Zeller, Michael; Chen, Yumay; Wang, Ping; Baldi, Pierre; Gratton, Enrico; Fiehn, Oliver; Kaiser, PeterCancer & metabolism.2016;27141305
Effector T Cells Abrogate Stroma-Mediated Chemoresistance in Ovarian Cancer.Wang, Weimin; Kryczek, Ilona; Dost�l, Lubom�r; Lin, Heng; Tan, Lijun; Zhao, Lili; Lu, Fujia; Wei, Shuang; Maj, Tomasz; Peng, Dongjun; He, Gong; Vatan, Linda; Szeliga, Wojciech; Kuick, Rork; Kotarski, Jan; Tarkowski, Rafa?; Dou, Yali; Rattan, Ramandeep; Munkarah, Adnan; Liu, J Rebecca; Zou, WeipingCell2016 May 1927133165
RhoC GTPase Is a Potent Regulator of Glutamine Metabolism and N-Acetylaspartate Production in Inflammatory Breast Cancer Cells.Wynn, Michelle L; Yates, Joel A; Evans, Charles R; Van Wassenhove, Lauren D; Wu, Zhi Fen; Bridges, Sydney; Bao, Liwei; Fournier, Chelsea; Ashrafzadeh, Sepideh; Merrins, Matthew J; Satin, Leslie S; Schnell, Santiago; Burant, Charles F; Merajver, Sofia DThe Journal of biological chemistry.2016 Jun 24;27129239
An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis.Chen, Jun; Wright, Kerry; Davis, John M; Jeraldo, Patricio; Marietta, Eric V; Murray, Joseph; Nelson, Heidi; Matteson, Eric L; Taneja, VeenaGenome medicine.2016;27102666
Plasma amino acid and metabolite signatures tracking diabetes progression in the UCD-T2DM rat model.Piccolo, Brian D; Graham, James L; Stanhope, Kimber L; Fiehn, Oliver; Havel, Peter J; Adams, Sean HAmerican journal of physiology. Endocrinology and metabolism.2016 06 01;27094034
Bioactive lipid profiling reveals drug target engagement of a soluble epoxide hydrolase inhibitor in a murine model of tobacco smoke exposure.Nording, Malin L; Yang, Jun; Hoang, Laura; Zamora, Vanessa; Uyeminami, Dale; Espiritu, Imelda; Pinkerton, Kent E; Hammock, Bruce D; Luria, AyalaJournal of metabolomics2015 Apr27076918
Computational Modeling of Competitive Metabolism between ?3- and ?6-Polyunsaturated Fatty Acids in Inflammatory Macrophages.Gupta, Shakti; Kihara, Yasuyuki; Maurya, Mano R; Norris, Paul C; Dennis, Edward A; Subramaniam, ShankarThe journal of physical chemistry. B.2016 Aug 25;27063350
Exogenous Fatty Acids Are the Preferred Source of Membrane Lipids in Proliferating Fibroblasts.Yao, Cong-Hui; Fowle-Grider, Ronald; Mahieu, Nathanial G; Liu, Gao-Yuan; Chen, Ying-Jr; Wang, Rencheng; Singh, Manmilan; Potter, Gregory S; Gross, Richard W; Schaefer, Jacob; Johnson, Stephen L; Patti, Gary JCell chemical biology.2016 Apr 21;27049668
Metabolomics by Gas Chromatography-Mass Spectrometry: Combined Targeted and Untargeted Profiling.Fiehn, OliverCurrent protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]27038389
(1)H NMR Metabolomics Study of Spleen from C57BL/6 Mice Exposed to Gamma Radiation.Xiao, X; Hu, M; Liu, M; Hu, J ZMetabolomics : open access27019763
Metabolomics Reveals New Mechanisms for Pathogenesis in Barth Syndrome and Introduces Novel Roles for Cardiolipin in Cellular Function.Sandlers, Yana; Mercier, Kelly; Pathmasiri, Wimal; Carlson, Jim; McRitchie, Susan; Sumner, Susan; Vernon, Hilary JPloS one.2016;27015085
Association of urinary metabolites with radiographic progression of knee osteoarthritis in overweight and obese adults: an exploratory study.Loeser, R F; Pathmasiri, W; Sumner, S J; McRitchie, S; Beavers, D; Saxena, P; Nicklas, B J; Jordan, J; Guermazi, A; Hunter, D J; Messier, S POsteoarthritis and cartilage / OARS, Osteoarthritis Research Society2016 Mar 2127012755
Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform.Cong, Yongzheng; Katipamula, Shanta; Trader, Cameron D; Orton, Daniel J; Geng, Tao; Baker, Erin S; Kelly, Ryan TLab on a chip2016 Apr 2627009517
Acute Female Hypogonadism Alters Adipose Tissue Fatty Acid Storage Factors and Chylomicronemia.Santosa, Sylvia; Bonnes, Sara L; Jensen, Michael DThe Journal of clinical endocrinology and metabolism.2016 May;27003301
Serum phosphatidylethanolamine levels distinguish benign from malignant solitary pulmonary nodules and represent a potential diagnostic biomarker for lung cancer.Fahrmann, Johannes F; Grapov, Dmitry; DeFelice, Brian C; Taylor, Sandra; Kim, Kyoungmi; Kelly, Karen; Wikoff, William R; Pass, Harvey; Rom, William N; Fiehn, Oliver; Miyamoto, SuzanneCancer biomarkers : section A of Disease markers.2016 Mar 11;27002763
Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases.Chen, Zhaohui; Kim, JayoungBMC urology27000794
Gut microbiome-derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease.Mathewson, Nathan D; Jenq, Robert; Mathew, Anna V; Koenigsknecht, Mark; Hanash, Alan; Toubai, Tomomi; Oravecz-Wilson, Katherine; Wu, Shin-Rong; Sun, Yaping; Rossi, Corinne; Fujiwara, Hideaki; Byun, Jaeman; Shono, Yusuke; Lindemans, Caroline; Calafiore, Marco; Schmidt, Thomas C; Honda, Kenya; Young, Vincent B; Pennathur, Subramaniam; van den Brink, Marcel; Reddy, PavanNature immunology.2016 May;26998764
1D-¹H-nuclear magnetic resonance metabolomics reveals age-related changes in metabolites associated with experimental venous thrombosis.Obi, Andrea T; Stringer, Kathleen A; Diaz, Jose A; Finkel, Michael A; Farris, Diana M; Yeomans, Larisa; Wakefield, Thomas; Myers Jr, Daniel DJournal of vascular surgery. Venous and lymphatic disorders.2016 Apr;26993871
Anti-Ulcer Efficacy of Soluble Epoxide Hydrolase Inhibitor TPPU on Diclofenac-Induced Intestinal Ulcers.Goswami, Sumanta Kumar; Wan, Debin; Yang, Jun; Trindade da Silva, Carlos A; Morisseau, Christophe; Kodani, Sean D; Yang, Guang-Yu; Inceoglu, Bora; Hammock, Bruce DThe Journal of pharmacology and experimental therapeutics.2016 Jun;26989141
18F-Choline PET/MRI: The Additional Value of PET for MRI-Guided Transrectal Prostate Biopsies.Piert, Morand; Montgomery, Jeffrey; Kunju, Lakshmi Priya; Siddiqui, Javed; Rogers, Virginia; Rajendiran, Thekkelnaycke; Johnson, Timothy D; Shao, Xia; Davenport, Matthew SJournal of nuclear medicine : official publication, Society of Nuclear Medicine.2016 Jul;26985061
Exercise Prevents Diet-Induced Cellular Senescence in Adipose Tissue.Schafer, Marissa J; White, Thomas A; Evans, Glenda; Tonne, Jason M; Verzosa, Grace C; Stout, Michael B; Mazula, Daniel L; Palmer, Allyson K; Baker, Darren J; Jensen, Michael D; Torbenson, Michael S; Miller, Jordan D; Ikeda, Yasuhiro; Tchkonia, Tamara; vanDiabetes.2016 Jun;26983960
Extraction, Enrichment, Solubilization, and Digestion Techniques for Membrane Proteomics.Moore, Stephanie M; Hess, Stephanie M; Jorgenson, James WJournal of proteome research.2016 Apr 1;26979493
Gene deficiency and pharmacological inhibition of soluble epoxide hydrolase confers resilience to repeated social defeat stress.Ren, Qian; Ma, Min; Ishima, Tamaki; Morisseau, Christophe; Yang, Jun; Wagner, Karen M; Zhang, Ji-Chun; Yang, Chun; Yao, Wei; Dong, Chao; Han, Mei; Hammock, Bruce D; Hashimoto, KenjiProceedings of the National Academy of Sciences of the United States of America.2016 Mar 29;26976569
Impaired 17,20-Lyase Activity in Male Mice Lacking Cytochrome b5 in Leydig Cells.Sondhi, Varun; Owen, Bryn M; Liu, Jiayan; Chomic, Robert; Kliewer, Steven A; Hughes, Beverly A; Arlt, Wiebke; Mangelsdorf, David J; Auchus, Richard JMolecular endocrinology (Baltimore, Md.).2016 Apr;26974035
Applications of NMR spectroscopy to systems biochemistry.Fan, Teresa W-M; Lane, Andrew NProgress in nuclear magnetic resonance spectroscopy2016 Feb26952191
Contemporary views on the genetics of anorexia nervosa.Shih, Pei-an Betty; Woodside, D BlakeEuropean neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology.2016 Apr;26944296
Catalytic Activities of Tumor-Specific Human Cytochrome P450 CYP2W1 Toward Endogenous Substrates.Zhao, Yan; Wan, Debin; Yang, Jun; Hammock, Bruce D; Ortiz de Montellano, Paul RDrug metabolism and disposition: the biological fate of chemicals.2016 May;26936974
Short chain acyl-CoA dehydrogenase deficiency and short-term high-fat diet perturb mitochondrial energy metabolism and transcriptional control of lipid-handling in liver.Ghosh, Sujoy; Kruger, Claudia; Wicks, Shawna; Simon, Jacob; Kumar, K Ganesh; Johnson, William D; Mynatt, Randall L; Noland, Robert C; Richards, Brenda KNutrition & metabolism.2016;26933443
Effect of Pramlintide on Postprandial Glucose Fluxes in Type 1 Diabetes.Hinshaw, Ling; Schiavon, Michele; Dadlani, Vikash; Mallad, Ashwini; Dalla Man, Chiara; Bharucha, Adil; Basu, Rita; Geske, Jennifer R; Carter, Rickey E; Cobelli, Claudio; Basu, Ananda; Kudva, Yogish CThe Journal of clinical endocrinology and metabolism.2016 May;26930181
Emerging new strategies for successful metabolite identification in metabolomics.Bingol, Kerem; Bruschweiler-Li, Lei; Li, Dawei; Zhang, Bo; Xie, Mouzhe; Brüschweiler, RafaelBioanalysis.2016 Mar;26915807
Unique plasma metabolomic signatures of individuals with inherited disorders of long-chain fatty acid oxidation.McCoin, Colin S; Piccolo, Brian D; Knotts, Trina A; Matern, Dietrich; Vockley, Jerry; Gillingham, Melanie B; Adams, Sean HJournal of inherited metabolic disease.2016 May;26907176
An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection.Antharam, Vijay C; McEwen, Daniel C; Garrett, Timothy J; Dossey, Aaron T; Li, Eric C; Kozlov, Andrew N; Mesbah, Zhubene; Wang, Gary PPloS one.2016;26871580
Risperidone-induced weight gain is mediated through shifts in the gut microbiome and suppression of energy expenditure.Bahra, Sarah M; Weidemann, Benjamin J; Castro, Ana N; Walsh, John W; deLeon, Orlando; Burnett, Colin M L; Pearson, Nicole A; Murry, Daryl J; Grobe, Justin L; Kirby, John REBioMedicine.2015 Nov;26870798
Adrenal-derived 11-oxygenated 19-carbon steroids are the dominant androgens in classic 21-hydroxylase deficiency.Turcu, Adina F; Nanba, Aya T; Chomic, Robert; Upadhyay, Sunil K; Giordano, Thomas J; Shields, James J; Merke, Deborah P; Rainey, William E; Auchus, Richard JEuropean journal of endocrinology / European Federation of Endocrine Societies.2016 May;26865584
Non-genomic activities of retinoic acid receptor alpha control actin cytoskeletal events in human platelets.Rondina, M T; Freitag, M; Pluthero, F G; Kahr, W H A; Rowley, J W; Kraiss, L W; Franks, Z; Zimmerman, G A; Weyrich, A S; Schwertz, HJournal of thrombosis and haemostasis : JTH.2016 May;26848712
White Matter Lipids as a Ketogenic Fuel Supply in Aging Female Brain: Implications for Alzheimer's Disease.Klosinski, Lauren P; Yao, Jia; Yin, Fei; Fonteh, Alfred N; Harrington, Michael G; Christensen, Trace A; Trushina, Eugenia; Brinton, Roberta DiazEBioMedicine.2015 Dec;26844268
Microbial metabolomics in open microscale platforms.Barkal, Layla J; Theberge, Ashleigh B; Guo, Chun-Jun; Spraker, Joe; Rappert, Lucas; Berthier, Jean; Brakke, Kenneth A; Wang, Clay C C; Beebe, David J; Keller, Nancy P; Berthier, ErwinNature communications.2016;26842393
Bar Coding MS(2) Spectra for Metabolite Identification.Spalding, Jonathan L; Cho, Kevin; Mahieu, Nathaniel G; Nikolskiy, Igor; Llufrio, Elizabeth M; Johnson, Stephen L; Patti, Gary JAnalytical chemistry2016 Mar 126837423
Surprising impact of remote groups on the folding--unfolding and dimer-chain equilibria of bifunctional H-bonding unimers.Liu, Rui; Cheng, Shuang; Baker, Erin S; Smith, Richard D; Zeng, Xiao Cheng; Gong, BingChemical communications (Cambridge, England).2016 Mar 7;26830456
Isotopic Ratio Outlier Analysis of the S. cerevisiae Metabolome Using Accurate Mass Gas Chromatography/Time-of-Flight Mass Spectrometry: A New Method for Discovery.Qiu, Yunping; Moir, Robyn; Willis, Ian; Beecher, Chris; Tsai, Yu-Hsuan; Garrett, Timothy J; Yost, Richard A; Kurland, Irwin JAnalytical chemistry.2016 Mar 1;26820234
Lipotoxicity in steatohepatitis occurs despite an increase in tricarboxylic acid cycle activity.Patterson, Rainey E; Kalavalapalli, Srilaxmi; Williams, Caroline M; Nautiyal, Manisha; Mathew, Justin T; Martinez, Janie; Reinhard, Mary K; McDougall, Danielle J; Rocca, James R; Yost, Richard A; Cusi, Kenneth; Garrett, Timothy J; Sunny, Nishanth EAmerican journal of physiology. Endocrinology and metabolism.2016 Apr 1;26814015
Impact of Long-Term Poor and Good Glycemic Control on Metabolomics Alterations in Type 1 Diabetic People.Dutta, Tumpa; Kudva, Yogish C; Persson, Xuan-Mai T; Schenck, Louis A; Ford, G Charles; Singh, Ravinder J; Carter, Rickey; Nair, K SreekumaranThe Journal of clinical endocrinology and metabolism2016 Mar26796761
ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts.Cavalcante, Raymond G; Patil, Snehal; Weymouth, Terry E; Bendinskas, Kestutis G; Karnovsky, Alla; Sartor, Maureen ABioinformatics (Oxford, England).2016 05 15;26794319
Metabolic Profiling of Right Ventricular-Pulmonary Vascular Function Reveals Circulating Biomarkers of Pulmonary Hypertension.Lewis, Gregory D; Ngo, Debby; Hemnes, Anna R; Farrell, Laurie; Domos, Carly; Pappagianopoulos, Paul P; Dhakal, Bishnu P; Souza, Amanda; Shi, Xu; Pugh, Meredith E; Beloiartsev, Arkadi; Sinha, Sumita; Clish, Clary B; Gerszten, Robert EJournal of the American College of Cardiology.2016 Jan 19;26791065
Direct Evidence of Acetaminophen Interference with Subcutaneous Glucose Sensing in Humans: A Pilot Study.Basu, Ananda; Veettil, Sona; Dyer, Roy; Peyser, Thomas; Basu, RitaDiabetes technology & therapeutics.2016 Feb;26784129
A chemical proteomic atlas of brain serine hydrolases identifies cell type-specific pathways regulating neuroinflammation.Viader, Andreu; Ogasawara, Daisuke; Joslyn, Christopher M; Sanchez-Alavez, Manuel; Mori, Simone; Nguyen, William; Conti, Bruno; Cravatt, Benjamin FeLife.2016;26779719
Metabolomic Profiling of Arginine Metabolome Links Altered Methylation to Chronic Kidney Disease Accelerated Atherosclerosis.Mathew, Anna V; Zeng, Lixia; Byun, Jaeman; Pennathur, SubramaniamJournal of proteomics & bioinformatics.2015 Oct;26778898
Targeted Lipidomic and Transcriptomic Analysis Identifies Dysregulated Renal Ceramide Metabolism in a Mouse Model of Diabetic Kidney Disease.Sas, Kelli M; Nair, Viji; Byun, Jaeman; Kayampilly, Pradeep; Zhang, Hongyu; Saha, Jharna; Brosius 3rd, Frank C; Kretzler, Matthias; Pennathur, SubramaniamJournal of proteomics & bioinformatics.2015 Oct;26778897
Dicer1 mediated miRNA processing shapes the mRNA profile and function of murine platelets.Rowley, Jesse W; Chappaz, Stéphane; Corduan, Aurélie; Chong, Mark M W; Campbell, Robert; Khoury, Amanda; Manne, Bhanu Kanth; Wurtzel, Jeremy G T; Michael, James V; Goldfinger, Lawrence E; Mumaw, Michele M; Nieman, Marvin T; Kile, Benjamin T; Provost, Patrick; Weyrich, Andrew SBlood.2016 Jan 14;26773046
Effect of fish oil on monoepoxides derived from fatty acids during cardiac surgery.Akintoye, Emmanuel; Wu, Jason H Y; Hou, Tao; Song, Xiaoling; Yang, Jun; Hammock, Bruce; Mozaffarian, DariushJournal of lipid research.2016 Mar;26749073
Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry.Kyle, Jennifer E; Zhang, Xing; Weitz, Karl K; Monroe, Matthew E; Ibrahim, Yehia M; Moore, Ronald J; Cha, Jeeyeon; Sun, Xiaofei; Lovelace, Erica S; Wagoner, Jessica; Polyak, Stephen J; Metz, Thomas O; Dey, Sudhansu K; Smith, Richard D; Burnum-Johnson, Kristin E; Baker, Erin SThe Analyst2016 Feb 1526734689
SDHB-Deficient Cancers: The Role of Mutations That Impair Iron Sulfur Cluster Delivery.Saxena, Neetu; Maio, Nunziata; Crooks, Daniel R; Ricketts, Christopher J; Yang, Youfeng; Wei, Ming-Hui; Fan, Teresa W-M; Lane, Andrew N; Sourbier, Carole; Singh, Anamika; Killian, J Keith; Meltzer, Paul S; Vocke, Cathy D; Rouault, Tracey A; Linehan, W MarstonJournal of the National Cancer Institute.2016 Jan;26719882
Altered Skeletal Muscle Mitochondrial Proteome As the Basis of Disruption of Mitochondrial Function in Diabetic Mice.Zabielski, Piotr; Lanza, Ian R; Gopala, Srinivas; Holtz Heppelmann, Carrie J; Bergen 3rd, H Robert; Dasari, Surendra; Nair, K SreekumaranDiabetes2016 Mar26718503
Predictors of Whole-Body Insulin Sensitivity Across Ages and Adiposity in Adult Humans.Lalia, Antigoni Z; Dasari, Surendra; Johnson, Matthew L; Robinson, Matthew M; Konopka, Adam R; Distelmaier, Klaus; Port, John D; Glavin, Maria T; Esponda, Raul Ruiz; Nair, K Sreekumaran; Lanza, Ian RThe Journal of clinical endocrinology and metabolism2016 Feb26709968
Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS.Ma, Yan; Tanaka, Nobuo; Vaniya, Arpana; Kind, Tobias; Fiehn, OliverJournal of agricultural and food chemistry2016 Jan 2026698107
Antioxidant Drug Tempol Promotes Functional Metabolic Changes in the Gut Microbiota.Cai, Jingwei; Zhang, Limin; Jones, Richard A; Correll, Jared B; Hatzakis, Emmanuel; Smith, Philip B; Gonzalez, Frank J; Patterson, Andrew DJournal of proteome research2016 Feb 526696396
(13)C Tracer Studies of Metabolism in Mouse Tumor Xenografts.Lane, Andrew N; Yan, Jun; Fan, Teresa W-MBio-protocol.2015 Nov 20;26693168
A roadmap for the XCMS family of software solutions in metabolomics.Mahieu, Nathaniel G; Genenbacher, Jessica Lloyd; Patti, Gary JCurrent opinion in chemical biology.2016 Feb;87-9326673825
Intestine-selective farnesoid X receptor inhibition improves obesity-related metabolic dysfunction.Jiang, Changtao; Xie, Cen; Lv, Ying; Li, Jing; Krausz, Kristopher W; Shi, Jingmin; Brocker, Chad N; Desai, Dhimant; Amin, Shantu G; Bisson, William H; Liu, Yulan; Gavrilova, Oksana; Patterson, Andrew D; Gonzalez, Frank JNature communications26670557
Rapid and profound rewiring of brain lipid signaling networks by acute diacylglycerol lipase inhibition.Ogasawara, Daisuke; Deng, Hui; Viader, Andreu; Baggelaar, Marc P; Breman, Arjen; den Dulk, Hans; van den Nieuwendijk, Adriann M C H; Soethoudt, Marjolein; van der Wel, Tom; Zhou, Juan; Overkleeft, Herman S; Sanchez-Alavez, Manuel; Mo, Simone; Nguyen, William; Conti, Bruno; Liu, Xiaojie; Chen, Yao; Liu, Qing-Song; Cravatt, Benjamin F; van der Stelt, MarioProceedings of the National Academy of Sciences of the United States of America2016 Jan 526668358
PPAR-pan activation induces hepatic oxidative stress and lipidomic remodelling.Ament, Zsuzsanna; West, James A; Stanley, Elizabeth; Ashmore, Tom; Roberts, Lee D; Wright, Jayne; Nicholls, Andrew W; Griffin, Julian LFree radical biology & medicine.2016 Jun;26654758
Toward Merging Untargeted and Targeted Methods in Mass Spectrometry-Based Metabolomics and Lipidomics.Cajka, Tomas; Fiehn, OliverAnalytical chemistry2016 Jan 526637011
Chronic Zinc Deficiency Alters Chick Gut Microbiota Composition and Function.Reed, Spenser; Neuman, Hadar; Moscovich, Sharon; Glahn, Raymond P; Koren, Omry; Tako, EladNutrients.2015 Dec;26633470
Evidence that 2-hydroxyglutarate is not readily metabolized in colorectal carcinoma cells.Gelman, Susan J; Mahieu, Nathaniel G; Cho, Kevin; Llufrio, Elizabeth M; Wencewicz, Timothy A; Patti, Gary JCancer & metabolism.2015;26629338
Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome.Quinn, Robert A; Phelan, Vanessa V; Whiteson, Katrine L; Garg, Neha; Bailey, Barbara A; Lim, Yan Wei; Conrad, Douglas J; Dorrestein, Pieter C; Rohwer, Forest LThe ISME journal.2016 Jun;26623545
Hepatocytes release ceramide-enriched pro-inflammatory extracellular vesicles in an IRE1?-dependent manner.Kakazu, Eiji; Mauer, Amy S; Yin, Meng; Malhi, HarmeetJournal of lipid research2016 Feb26621917
Insulin:Carbohydrate Ratio--Part of the Story.Basu, Ananda; Basu, RitaDiabetes technology & therapeutics.2015 Dec;26618719
Virus encoded circulatory miRNAs for early detection of prostate cancer.Kim, Jayoung; Yun, Seok Joong; Kim, Wun-JaeBMC urology.2015;11626612689
Metabolite Signatures in Hydrophilic Extracts of Mouse Lungs Exposed to Cigarette Smoke Revealed by (1)H NMR Metabolomics Investigation.Jz, Hu; X, Wang; J, Feng; Bj, Robertson; Km, Waters; Sc, Tilton; Jg, Pounds; Ra, Corley; M, Liu; M, HuMetabolomics : open access.2015 Jun;26609465
Nanoparticle-Assisted Removal of Protein in Human Serum for Metabolomics Studies.Zhang, Bo; Xie, Mouzhe; Bruschweiler-Li, Lei; Br�schweiler, RafaelAnalytical chemistry2016 Jan 526605638
Quantitative H2S-mediated protein sulfhydration reveals metabolic reprogramming during the integrated stress response.Gao, Xing-Huang; Krokowski, Dawid; Guan, Bo-Jhih; Bederman, Ilya; Majumder, Mithu; Parisien, Marc; Diatchenko, Luda; Kabil, Omer; Willard, Belinda; Banerjee, Ruma; Wang, Benlian; Bebek, Gurkan; Evans, Charles R; Fox, Paul L; Gerson, Stanton L; Hoppel, Charles L; Liu, Ming; Arvan, Peter; Hatzoglou, MariaeLife.2015;26595448
Dose-Dependent Response of Personal Glucose Meters to Nicotinamide Coenzymes: Applications to Point-of-Care Diagnostics of Many Non-Glucose Targets in a Single Step.Zhang, Jingjing; Xiang, Yu; Wang, Miao; Basu, Ananda; Lu, YiAngewandte Chemie (International ed. in English).2016 Jan 11;26593219
A Diet-Sensitive BAF60a-Mediated Pathway Links Hepatic Bile Acid Metabolism to Cholesterol Absorption and Atherosclerosis.Meng, Zhuo-Xian; Wang, Lin; Chang, Lin; Sun, Jingxia; Bao, Jiangyin; Li, Yaqiang; Chen, Y Eugene; Lin, Jiandie DCell reports.2015 Nov 24;26586440
Ion Mobility in Clinical Analysis: Current Progress and Future Perspectives.Chouinard, Christopher D; Wei, Michael S; Beekman, Christopher R; Kemperman, Robin H J; Yost, Richard AClinical chemistry2016 Jan26585928
An in silico MS/MS library for automatic annotation of novel FAHFA lipids.Ma, Yan; Kind, Tobias; Vaniya, Arpana; Gennity, Ingrid; Fahrmann, Johannes F; Fiehn, OliverJournal of cheminformatics.2015;26579213
Oxidative Modifications of Protein Tyrosyl Residues Are Increased in Plasma of Human Subjects with Interstitial Lung Disease.Pennathur, Subramaniam; Vivekanandan-Giri, Anuradha; Locy, Morgan L; Kulkarni, Tejaswini; Zhi, Degui; Zeng, Lixia; Byun, Jaeman; de Andrade, Joao A; Thannickal, Victor JAmerican journal of respiratory and critical care medicine.2016 Apr 15;26575972
The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition.Sperber, Henrik; Mathieu, Julie; Wang, Yuliang; Ferreccio, Amy; Hesson, Jennifer; Xu, Zhuojin; Fischer, Karin A; Devi, Arikketh; Detraux, Damien; Gu, Haiwei; Battle, Stephanie L; Showalter, Megan; Valensisi, Cristina; Bielas, Jason H; Ericson, Nolan G; Margaretha, Lilyana; Robitaille, Aaron M; Margineantu, Daciana; Fiehn, Oliver; Hockenbery, David; Blau, C Anthony; Raftery, Daniel; Margolin, Adam A; Hawkins, R David; Moon, Randall T; Ware, Carol B; Ruohola-Baker, HanneleNature cell biology2015 Dec26571212
Altered fecal short chain fatty acid composition in children with a history of Hirschsprung-associated enterocolitis.Demehri, Farokh R; Frykman, Philip K; Cheng, Zhi; Ruan, Chunhai; Wester, Tomas; Nordenskj�ld, Agneta; Kawaguchi, Akemi; Hui, Thomas T; Granstr�m, Anna L; Funari, Vince; Teitelbaum, Daniel H; HAEC Collaborative Research GroupJournal of pediatric surgery2016 Jan26561246
Organization of the Mammalian Ionome According to Organ Origin, Lineage Specialization, and Longevity.Ma, Siming; Lee, Sang-Goo; Kim, Eun Bae; Park, Thomas J; Seluanov, Andrei; Gorbunova, Vera; Buffenstein, Rochelle; Seravalli, Javier; Gladyshev, Vadim NCell reports.2015 Nov 17;1319-2626549444
Microbiota-Dependent Hepatic Lipogenesis Mediated by Stearoyl CoA Desaturase 1 (SCD1) Promotes Metabolic Syndrome in TLR5-Deficient Mice.Singh, Vishal; Chassaing, Benoit; Zhang, Limin; San Yeoh, Beng; Xiao, Xia; Kumar, Manish; Baker, Mark T; Cai, Jingwei; Walker, Rachel; Borkowski, Kamil; Harvatine, Kevin J; Singh, Nagendra; Shearer, Gregory C; Ntambi, James M; Joe, Bina; Patterson, Andrew D; Gewirtz, Andrew T; Vijay-Kumar, MatamCell metabolism2015 Dec 126525535
Altered Metabolic Profile With Sodium-Restricted Dietary Approaches to Stop Hypertension Diet in Hypertensive Heart Failure With Preserved Ejection Fraction.Mathew, Anna V; Seymour, E Mitchell; Byun, Jaeman; Pennathur, Subramaniam; Hummel, Scott LJournal of cardiac failure2015 Dec26497755
Interactions Between the Gastrointestinal Microbiome and Clostridium difficile.Theriot, Casey M; Young, Vincent BAnnual review of microbiology.2015;445-6126488281
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools.Sud M1, Fahy E1, Cotter D1, Azam K1, Vadivelu I1, Burant C2, Edison A3, Fiehn O4, Higashi R5, Nair KS6, Sumner S7, Subramaniam S8.Nucleic Acids Research2015 Oct 1326467476
Dectin-1 Activation by a Natural Product ?-Glucan Converts Immunosuppressive Macrophages into an M1-like Phenotype.Liu, Min; Luo, Fengling; Ding, Chuanlin; Albeituni, Sabrin; Hu, Xiaoling; Ma, Yunfeng; Cai, Yihua; McNally, Lacey; Sanders, Mary Ann; Jain, Dharamvir; Kloecker, Goetz; Bousamra 2nd, Michael; Zhang, Huang-ge; Higashi, Richard M; Lane, Andrew N; Fan, Teresa W-M; Yan, JunJournal of immunology (Baltimore, Md. : 1950)2015 Nov 1526453753
The balance of powers: Redox regulation of fibrogenic pathways in kidney injury.Okamura, Daryl M; Pennathur, SubramaniamRedox biology.2015 Dec;495-50426448394
Use of the second-generation antipsychotic, risperidone, and secondary weight gain are associated with an altered gut microbiota in children.Bahr, S M; Tyler, B C; Wooldridge, N; Butcher, B D; Burns, T L; Teesch, L M; Oltman, C L; Azcarate-Peril, M A; Kirby, J R; Calarge, C ATranslational psychiatry.2015;26440540
AMPK Protects Leukemia-Initiating Cells in Myeloid Leukemias from Metabolic Stress in the Bone Marrow.Saito, Yusuke; Chapple, Richard H; Lin, Angelique; Kitano, Ayumi; Nakada, DaisukeCell stem cell.2015 Nov 5;585-9626440282
Warpgroup: increased precision of metabolomic data processing by consensus integration bound analysis.Mahieu, Nathaniel G; Spalding, Jonathan L; Patti, Gary JBioinformatics (Oxford, England)2016 Jan 1526424859
Adenylosuccinate Is an Insulin Secretagogue Derived from Glucose-Induced Purine Metabolism.Gooding, Jessica R; Jensen, Mette V; Dai, Xiaoqing; Wenner, Brett R; Lu, Danhong; Arumugam, Ramamani; Ferdaoussi, Mourad; MacDonald, Patrick E; Newgard, Christopher BCell reports.2015 Oct 6;157-6726411681
Liquid Chromatography-Mass Spectrometry Metabolic and Lipidomic Sample Preparation Workflow for Suspension-Cultured Mammalian Cells using Jurkat T lymphocyte Cells.Ulmer, Candice Z; Yost, Richard A; Chen, Jing; Mathews, Clayton E; Garrett, Timothy JJournal of proteomics & bioinformatics.2015 Jun;126-13226401069
Genomic, Proteomic, and Metabolomic Data Integration Strategies.Wanichthanarak, Kwanjeera; Fahrmann, Johannes F; Grapov, DmitryBiomarker insights.2015;26396492
Potential serum biomarkers from a metabolomics study of autism.Wang, Han; Liang, Shuang; Wang, Maoqing; Gao, Jingquan; Sun, Caihong; Wang, Jia; Xia, Wei; Wu, Shiying; Sumner, Susan J; Zhang, Fengyu; Sun, Changhao; Wu, LijieJournal of psychiatry & neuroscience : JPN.2016 Jan;26395811
The ubiquitin ligase Siah2 regulates obesity-induced adipose tissue inflammation.Kilroy, Gail; Carter, Lauren E; Newman, Susan; Burk, David H; Manuel, Justin; Möller, Andreas; Bowtell, David D; Mynatt, Randall L; Ghosh, Sujoy; Floyd, Z ElizabethObesity (Silver Spring, Md.).2015 Sep 18;26380945
An overview of methods using (13)C for improved compound identification in metabolomics and natural products.Clendinen, Chaevien S; Stupp, Gregory S; Ajredini, Ramadan; Lee-McMullen, Brittany; Beecher, Chris; Edison, Arthur SFrontiers in plant science.2015;26379677
Decline of Phosphotransfer and Substrate Supply Metabolic Circuits Hinders ATP Cycling in Aging Myocardium.Nemutlu, Emirhan; Gupta, Anu; Zhang, Song; Viqar, Maria; Holmuhamedov, Ekhson; Terzic, Andre; Jahangir, Arshad; Dzeja, PetrasPloS one.2015;e013655626378442
Methylseleninic acid promotes antitumour effects via nuclear FOXO3a translocation through Akt inhibition.Tarrado-Castellarnau, Míriam; Cortés, Roldán; Zanuy, Miriam; Tarragó-Celada, Josep; Polat, Ibrahim H; Hill, Richard; Fan, Teresa W M; Link, Wolfgang; Cascante, MartaPharmacological research.2015 Dec;26375988
Perhexiline activates KLF14 and reduces atherosclerosis by modulating ApoA-I production.Guo, Yanhong; Fan, Yanbo; Zhang, Jifeng; Lomberk, Gwen A; Zhou, Zhou; Sun, Lijie; Mathison, Angela J; Garcia-Barrio, Minerva T; Zhang, Ji; Zeng, Lixia; Li, Lei; Pennathur, Subramaniam; Willer, Cristen J; Rader, Daniel J; Urrutia, Raul; Chen, Y EugeneThe Journal of clinical investigation.2015 Oct 1;3819-3026368306
Vitamin D in Tear Fluid.Lu, Xiaowen; Elizondo, Rodolfo A; Nielsen, Rikke; Christensen, Erik I; Yang, Jun; Hammock, Bruce D; Watsky, Mitchell AInvestigative ophthalmology & visual science.2015 Sep;5880-726348637
Comparison of blood plasma sample preparation methods for combined LC-MS lipidomics and metabolomics.Patterson, Rainey E; Ducrocq, Antoine J; McDougall, Danielle J; Garrett, Timothy J; Yost, Richard AJournal of chromatography. B, Analytical technologies in the biomedical and life sciences.2015 Oct 1;260-626343017
Mechanism by Which Caloric Restriction Improves Insulin Sensitivity in Sedentary Obese Adults.Johnson, Matthew L; Distelmaier, Klaus; Lanza, Ian R; Irving, Brian A; Robinson, Matthew M; Konopka, Adam R; Shulman, Gerald I; Nair, K SreekumaranDiabetes.2016 Jan;74-8426324180
Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue.Ruhaak, L Renee; Taylor, Sandra L; Stroble, Carol; Nguyen, Uyen Thao; Parker, Evan A; Song, Ting; Lebrilla, Carlito B; Rom, William N; Pass, Harvey; Kim, Kyoungmi; Kelly, Karen; Miyamoto, SuzanneJournal of proteome research.2015 Nov 6;4538-4926322380
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics.Jeffryes, James G; Colastani, Ricardo L; Elbadawi-Sidhu, Mona; Kind, Tobias; Niehaus, Thomas D; Broadbelt, Linda J; Hanson, Andrew D; Fiehn, Oliver; Tyo, Keith E J; Henry, Christopher SJournal of cheminformatics.2015;26322134
Modeling Plasma-to-Interstitium Glucose Kinetics from Multitracer Plasma and Microdialysis Data.Schiavon, Michele; Dalla Man, Chiara; Dube, Simmi; Slama, Michael; Kudva, Yogish C; Peyser, Thomas; Basu, Ananda; Basu, Rita; Cobelli, ClaudioDiabetes technology & therapeutics.2015 Nov;26313215
Glucocorticoid Excess Increases Hepatic 11?-HSD-1 Activity in Humans: Implications in Steroid-Induced Diabetes.Dube, Simmi; Slama, Michael Q; Basu, Ananda; Rizza, Robert A; Basu, RitaThe Journal of clinical endocrinology and metabolism.2015 Nov;26308294
Mitochondrial Aging and Physical Decline: Insights From Three Generations of Women.Hebert, Sadie L; Marquet-de Rougé, Perrine; Lanza, Ian R; McCrady-Spitzer, Shelly K; Levine, James A; Middha, Sumit; Carter, Rickey E; Klaus, Katherine A; Therneau, Terry M; Highsmith, Edward W; Nair, K SreekumaranThe journals of gerontology. Series A, Biological sciences and medical sciences.2015 Nov;1409-1726297939
Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods.Abate-Pella, Daniel; Freund, Dana M; Ma, Yan; Simón-Manso, Yamil; Hollender, Juliane; Broeckling, Corey D; Huhman, David V; Krokhin, Oleg V; Stoll, Dwight R; Hegeman, Adrian D; Kind, Tobias; Fiehn, Oliver; Schymanski, Emma L; Prenni, Jessica E; Sumner, Lloyd W; Boswell, Paul GJournal of chromatography. A.2015 Sep 18;43-5126292625
Monoacylglycerol Lipase Regulates Fever Response.Sanchez-Alavez, Manuel; Nguyen, William; Mori, Simone; Moroncini, Gianluca; Viader, Andreu; Nomura, Daniel K; Cravatt, Benjamin F; Conti, BrunoPloS one.2015;e013443726287872
Elevated baseline serum glutamate as a pharmacometabolomic biomarker for acamprosate treatment outcome in alcohol-dependent subjects.Nam, H W; Karpyak, V M; Hinton, D J; Geske, J R; Ho, A M C; Prieto, M L; Biernacka, J M; Frye, M A; Weinshilboum, R M; Choi, D-STranslational psychiatry.2015;26285131
Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences.Todor, Horia; Gooding, Jessica; Ilkayeva, Olga R; Schmid, Amy KPloS one.2015;e013569326284786
Diacetylspermine Is a Novel Prediagnostic Serum Biomarker for Non-Small-Cell Lung Cancer and Has Additive Performance With Pro-Surfactant Protein B.Wikoff, William R; Hanash, Samir; DeFelice, Brian; Miyamoto, Suzanne; Barnett, Matt; Zhao, Yang; Goodman, Gary; Feng, Ziding; Gandara, David; Fiehn, Oliver; Taguchi, AyumuJournal of clinical oncology : official journal of the American Society of Clinical Oncology.2015 Nov 20;3880-626282655
Investigation of metabolomic blood biomarkers for detection of adenocarcinoma lung cancer.Fahrmann, Johannes F; Kim, Kyoungmi; DeFelice, Brian C; Taylor, Sandra L; Gandara, David R; Yoneda, Ken Y; Cooke, David T; Fiehn, Oliver; Kelly, Karen; Miyamoto, SuzanneCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.2015 Nov;1716-2326282632
Profiling the metabolome changes caused by cranberry procyanidins in plasma of female rats using (1) H NMR and UHPLC-Q-Orbitrap-HRMS global metabolomics approaches.Liu, Haiyan; Garrett, Timothy J; Tayyari, Fariba; Gu, LiweiMolecular nutrition & food research.2015 Nov;2107-1826264887
Assess the expression of ubiquitin specific protease USP2a for bladder cancer diagnosis.Jeong, Pildu; Ha, Yun-Sok; Yun, Seok-Joong; Yoon, Hyung Yoon; Freeman, Michael R; Kim, Jayoung; Kim, Wun-JaeBMC urology.2015 Aug 7;8026250800
Metastatic Melanoma Induced Metabolic Changes in C57BL/6J Mouse Stomach Measured by 1H NMR Spectroscopy.Wang, X; Hu, M; Liu, M; Hu, J ZMetabolomics : open access.2014;26246958
Organization of the Mammalian Metabolome according to Organ Function, Lineage Specialization, and Longevity.Ma, Siming; Yim, Sun Hee; Lee, Sang-Goo; Kim, Eun Bae; Lee, Sang-Rae; Chang, Kyu-Tae; Buffenstein, Rochelle; Lewis, Kaitlyn N; Park, Thomas J; Miller, Richard A; Clish, Clary B; Gladyshev, Vadim NCell metabolism.2015 Aug 4;332-4326244935
A new method to measure muscle protein synthesis in humans by endogenously introduced d9-leucine and using blood for precursor enrichment determination.Tran, Lee; Masters, Haley; Roust, Lori R; Katsanos, Christos SPhysiological reports.2015 Aug;26243214
Plasma linoleic acid partially mediates the association of bipolar disorder on self-reported mental health scales.Evans, Simon J; Assari, Shervin; Harrington, Gloria J; Chang, Ya-Wen; Burant, Charles F; McInnis, Melvin GJournal of psychiatric research.2015 Sep;61-726228402
The c-MET Network as Novel Prognostic Marker for Predicting Bladder Cancer Patients with an Increased Risk of Developing Aggressive Disease.Kim, Young-Won; Yun, Seok Joong; Jeong, Phildu; Kim, Seon-Kyu; Kim, Seon-Young; Yan, Chunri; Seo, Sung Phil; Lee, Sang Keun; Kim, Jayoung; Kim, Wun-JaePloS one.2015 Jul 30;e013455226225770
Left-Biased Spermatogenic Failure in 129/SvJ Dnd1Ter/+ Mice Correlates with Differences in Vascular Architecture, Oxygen Availability, and Metabolites.Bustamante-Marin, Ximena M; Cook, Matthew S; Gooding, Jessica; Newgard, Christopher; Capel, BlancheBiology of reproduction.2015 Sep;26224005
Inflammatory regulation of steroid sulfatase: A novel mechanism to control estrogen homeostasis and inflammation in chronic liver disease.Jiang, Mengxi; Klein, Marcus; Zanger, Ulrich M; Mohammad, Mohammad K; Cave, Matthew C; Gaikwad, Nilesh W; Dias, Natasha J; Selcer, Kyle W; Guo, Yan; He, Jinhan; Zhang, Xiuhui; Shen, Qiujin; Qin, Wenxin; Li, Jiang; Li, Song; Xie, WenJournal of hepatology.2016 Jan;26220752
Dietary DHA reduces downstream endocannabinoid and inflammatory gene expression and epididymal fat mass while improving aspects of glucose use in muscle in C57BL/6J mice.Kim, J; Carlson, M E; Kuchel, G A; Newman, J W; Watkins, B AInternational journal of obesity (2005)2016 Jan26219414
Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics.Vaniya, Arpana; Fiehn, OliverTrends in analytical chemistry : TRAC.2015 Jun 1;52-6126213431
Metabolic Interplay between Astrocytes and Neurons Regulates Endocannabinoid Action.Viader, Andreu; Blankman, Jacqueline L; Zhong, Peng; Liu, Xiaojie; Schlosburg, Joel E; Joslyn, Christopher M; Liu, Qing-Song; Tomarchio, Aaron J; Lichtman, Aron H; Selley, Dana E; Sim-Selley, Laura J; Cravatt, Benjamin FCell reports.2015 Aug 4;798-80826212325
Adjustment of Open-Loop Settings to Improve Closed-Loop Results in Type 1 Diabetes: A Multicenter Randomized Trial.Dassau, Eyal; Brown, Sue A; Basu, Ananda; Pinsker, Jordan E; Kudva, Yogish C; Gondhalekar, Ravi; Patek, Steve; Lv, Dayu; Schiavon, Michele; Lee, Joon Bok; Dalla Man, Chiara; Hinshaw, Ling; Castorino, Kristin; Mallad, Ashwini; Dadlani, Vikash; McCrady-Spitzer, Shelly K; McElwee-Malloy, Molly; Wakeman, Christian A; Bevier, Wendy C; Bradley, Paige K; Kovatchev, Boris; Cobelli, Claudio; Zisser, Howard C; Doyle 3rd, Francis JThe Journal of clinical endocrinology and metabolism.2015 Oct;26204135
Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization.Mariotti, Marco; Santesmasses, Didac; Capella-Gutierrez, Salvador; Mateo, Andrea; Arnan, Carme; Johnson, Rory; D'Aniello, Salvatore; Yim, Sun Hee; Gladyshev, Vadim N; Serras, Florenci; Corominas, Montserrat; Gabaldón, Toni; Guigó, RodericGenome research.2015 Sep;26194102
Temporal metabolomic responses of cultured HepG2 liver cells to high fructose and high glucose exposures.Meissen, John K; Hirahatake, Kristin M; Adams, Sean H; Fiehn, OliverMetabolomics : Official journal of the Metabolomic Society.2015 Jun 1;707-72126190955
Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer.Ibrahim, Yehia M; Baker, Erin S; Danielson 3rd, William F; Norheim, Randolph V; Prior, David C; Anderson, Gordon A; Belov, Mikhail E; Smith, Richard DInternational journal of mass spectrometry.2015 Feb 1;655-66226185483
Sealed rotors for in situ high temperature high pressure MAS NMR.Hu, Jian Zhi; Hu, Mary Y; Zhao, Zhenchao; Xu, Suochang; Vjunov, Aleksei; Shi, Hui; Camaioni, Donald M; Peden, Charles H F; Lercher, Johannes AChemical communications (Cambridge, England).2015 Aug 18;13458-6126171928
Fecal Microbiota Transplantation Eliminates Clostridium difficile in a Murine Model of Relapsing Disease.Seekatz, Anna M; Theriot, Casey M; Molloy, Caitlyn T; Wozniak, Katherine L; Bergin, Ingrid L; Young, Vincent BInfection and immunity2015 Oct26169276
Metabolomics and transcriptomics identify pathway differences between visceral and subcutaneous adipose tissue in colorectal cancer patients: the ColoCare study.Liesenfeld, David B; Grapov, Dmitry; Fahrmann, Johannes F; Salou, Mariam; Scherer, Dominique; Toth, Reka; Habermann, Nina; Böhm, Jürgen; Schrotz-King, Petra; Gigic, Biljana; Schneider, Martin; Ulrich, Alexis; Herpel, Esther; Schirmacher, Peter; Fiehn, Oliver; Lampe, Johanna W; Ulrich, Cornelia MThe American journal of clinical nutrition.2015 Aug;433-4326156741
Validation of a Metallomics Analysis of Placenta Tissue by Inductively-Coupled Plasma Mass Spectrometry.Harrington, James M; Young, Daniel J; Fry, Rebecca C; Weber, Frank X; Sumner, Susan S; Levine, Keith EBiological trace element research.2016 Feb;26155965
Two elephants in the room: new hybrid nuclear magnetic resonance and mass spectrometry approaches for metabolomics.Bingol, Kerem; Brüschweiler, RafaelCurrent opinion in clinical nutrition and metabolic care.2015 Sep;471-726154280
Carnitine Acetyltransferase Mitigates Metabolic Inertia and Muscle Fatigue during Exercise.Seiler, Sarah E; Koves, Timothy R; Gooding, Jessica R; Wong, Kari E; Stevens, Robert D; Ilkayeva, Olga R; Wittmann, April H; DeBalsi, Karen L; Davies, Michael N; Lindeboom, Lucas; Schrauwen, Patrick; Schrauwen-Hinderling, Vera B; Muoio, Deborah MCell metabolism2015 Jul 726154055
Glucagon sensitivity and clearance in type 1 diabetes: insights from in vivo and in silico experiments.Hinshaw, Ling; Mallad, Ashwini; Dalla Man, Chiara; Basu, Rita; Cobelli, Claudio; Carter, Rickey E; Kudva, Yogish C; Basu, AnandaAmerican journal of physiology. Endocrinology and metabolism.2015 Sep 1;26152766
Gene expression changes in subcutaneous adipose tissue due to Cushing's disease.Hochberg, Irit; Harvey, Innocence; Tran, Quynh T; Stephenson, Erin J; Barkan, Ariel L; Saltiel, Alan R; Chandler, William F; Bridges, DaveJournal of molecular endocrinology.2015 Oct;81-9426150553
Metabolomics and Natural-Products Strategies to Study Chemical Ecology in Nematodes.Edison, Arthur S; Clendinen, Chaevien S; Ajredini, Ramadan; Beecher, Chris; Ponce, Francesca V; Stupp, Gregory SIntegrative and comparative biology.2015 Sep;478-8526141866
Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (?FAIMS/IMS-MS) separations.Zhang, Xing; Ibrahim, Yehia M; Chen, Tsung-Chi; Kyle, Jennifer E; Norheim, Randolph V; Monroe, Matthew E; Smith, Richard D; Baker, Erin SThe Analyst.2015 Sep 28;6955-6326140287
Technology Use for Problem Solving in Adolescent Type 1 Diabetes.Hinshaw, Ling; Basu, AnandaDiabetes technology & therapeutics.2015 Jul;26132765
Nocturnal Glucose Metabolism in Type 1 Diabetes: A Study Comparing Single Versus Dual Tracer Approaches.Mallad, Ashwini; Hinshaw, Ling; Dalla Man, Chiara; Cobelli, Claudio; Basu, Rita; Lingineni, Ravi; Carter, Rickey E; Kudva, Yogish C; Basu, AnandaDiabetes technology & therapeutics.2015 Aug;587-9526121060
Metabolomics applied to the pancreatic islet.Gooding, Jessica R; Jensen, Mette V; Newgard, Christopher BArchives of biochemistry and biophysics.2015 Jun 25;26116790
Flux analysis of cholesterol biosynthesis in vivo reveals multiple tissue and cell-type specific pathways.Mitsche, Matthew A; McDonald, Jeffrey G; Hobbs, Helen H; Cohen, Jonathan CeLife.2015 Jun 26;e0799926114596
Metabolomics Analysis Reveals that AICAR Affects Glycerolipid, Ceramide and Nucleotide Synthesis Pathways in INS-1 Cells.ElAzzouny, Mahmoud A; Evans, Charles R; Burant, Charles F; Kennedy, Robert TPloS one.2015;26107620
Steroid receptor coactivators 1 and 2 mediate fetal-to-maternal signaling that initiates parturition.Gao, Lu; Rabbitt, Elizabeth H; Condon, Jennifer C; Renthal, Nora E; Johnston, John M; Mitsche, Matthew A; Chambon, Pierre; Xu, Jianming; O'Malley, Bert W; Mendelson, Carole RThe Journal of clinical investigation.2015 Jul 1;2808-2426098214
The macrophage phagocytic receptor CD36 promotes fibrogenic pathways on removal of apoptotic cells during chronic kidney injury.Pennathur, Subramaniam; Pasichnyk, Katie; Bahrami, Nadia M; Zeng, Lixia; Febbraio, Maria; Yamaguchi, Ikuyo; Okamura, Daryl MThe American journal of pathology.2015 Aug;26092500
Gene Expression Signature in Adipose Tissue of Acromegaly Patients.Hochberg, Irit; Tran, Quynh T; Barkan, Ariel L; Saltiel, Alan R; Chandler, William F; Bridges, DavePloS one.2015 Jun 18;e012935926087292
Use of Charged Nanoparticles in NMR-Based Metabolomics for Spectral Simplification and Improved Metabolite Identification.Zhang, Bo; Xie, Mouzhe; Bruschweiler-Li, Lei; Bingol, Kerem; Brüschweiler, RafaelAnalytical chemistry.2015 Jul 21;7211-726087125
Modulation of mitochondrial complex I activity averts cognitive decline in multiple animal models of familial Alzheimer's Disease.Zhang, Liang; Zhang, Song; Maezawa, Izumi; Trushin, Sergey; Minhas, Paras; Pinto, Matthew; Jin, Lee-Way; Prasain, Keshar; Nguyen, Thi D T; Yamazaki, Yu; Kanekiyo, Takahisa; Bu, Guojun; Gateno, Benjamin; Chang, Kyeong-Ok; Nath, Karl A; Nemutlu, Emirhan; Dzeja, Petras; Pang, Yuan-Ping; Hua, Duy H; Trushina, EugeniaEBioMedicine.2015 Apr 1;294-30526086035
Distribution and biomarker of carbon-14 labeled fullerene C60 ([(14) C(U)]C60 ) in pregnant and lactating rats and their offspring after maternal intravenous exposure.Snyder, Rodney W; Fennell, Timothy R; Wingard, Christopher J; Mortensen, Ninell P; Holland, Nathan A; Shannahan, Jonathan H; Pathmasiri, Wimal; Lewin, Anita H; Sumner, Susan C JJournal of applied toxicology : JAT.2015 Dec;1438-5126081520
Changes in Mineral Micronutrient Status During and After Pulmonary Exacerbation in Adults With Cystic Fibrosis.Lee, Moon Jeong; Alvarez, Jessica A; Smith, Ellen M; Killilea, David W; Chmiel, James F; Joseph, Patricia M; Grossmann, Ruth E; Gaggar, Amit; Ziegler, Thomas R; Tangpricha, Vin; Vitamin D for Enhancing the Immune System in Cystic Fibrosis InvestigatorsNutrition in clinical practice : official publication of the American Society for Parenteral and Enteral Nutrition.2015 Dec;26078287
Cross-talk between branched-chain amino acids and hepatic mitochondria is compromised in nonalcoholic fatty liver disease.Sunny, Nishanth E; Kalavalapalli, Srilaxmi; Bril, Fernando; Garrett, Timothy J; Nautiyal, Manisha; Mathew, Justin T; Williams, Caroline M; Cusi, KennethAmerican journal of physiology. Endocrinology and metabolism.2015 Aug 15;E311-926058864
Inhibition of soluble epoxide hydrolase does not improve the course of congestive heart failure and the development of renal dysfunction in rats with volume overload induced by aorto-caval fistula.?ervenka, L; Melenovsk�, V; Huskov�, Z; Sporkov�, A; B�rgelov�, M; ?karoupkov�, P; Hwang, S H; Hammock, B D; Imig, J D; Sadowski, JPhysiological research / Academia Scientiarum Bohemoslovaca26047375
Enhancing bottom-up and top-down proteomic measurements with ion mobility separations.Baker, Erin Shammel; Burnum-Johnson, Kristin E; Ibrahim, Yehia M; Orton, Daniel J; Monroe, Matthew E; Kelly, Ryan T; Moore, Ronald J; Zhang, Xing; Théberge, Roger; Costello, Catherine E; Smith, Richard DProteomics.2015 Aug;2766-7626046661
PQBP1 Is a Proximal Sensor of the cGAS-Dependent Innate Response to HIV-1.Yoh, Sunnie M; Schneider, Monika; Seifried, Janna; Soonthornvacharin, Stephen; Akleh, Rana E; Olivieri, Kevin C; De Jesus, Paul D; Ruan, Chunhai; de Castro, Elisa; Ruiz, Pedro A; Germanaud, David; des Portes, Vincent; García-Sastre, Adolfo; König, Renate; Chanda, Sumit KCell.2015 Jun 4;1293-30526046437
Infant Maturity at Birth Reveals Minor Differences in the Maternal Milk Metabolome in the First Month of Lactation.Spevacek, Ann R; Smilowitz, Jennifer T; Chin, Elizabeth L; Underwood, Mark A; German, J Bruce; Slupsky, Carolyn MThe Journal of nutrition.2015 Aug;1698-70826041675
Metabolomics Reveals that Aryl Hydrocarbon Receptor Activation by Environmental Chemicals Induces Systemic Metabolic Dysfunction in Mice.Zhang, Limin; Hatzakis, Emmanuel; Nichols, Robert G; Hao, Ruixin; Correll, Jared; Smith, Philip B; Chiaro, Christopher R; Perdew, Gary H; Patterson, Andrew DEnvironmental science & technology.2015 Jul 7;8067-7726023891
Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism.Edlund, Anna; Yang, Youngik; Yooseph, Shibu; Hall, Adam P; Nguyen, Don D; Dorrestein, Pieter C; Nelson, Karen E; He, Xuesong; Lux, Renate; Shi, Wenyuan; McLean, Jeffrey SThe ISME journal2015 Dec26023872
Eicosapentaenoic acid but not docosahexaenoic acid restores skeletal muscle mitochondrial oxidative capacity in old mice.Johnson, Matthew L; Lalia, Antigoni Z; Dasari, Surendra; Pallauf, Maximilian; Fitch, Mark; Hellerstein, Marc K; Lanza, Ian RAging cell.2015 Oct;734-4326010060
A less-biased analysis of metalloproteins reveals novel zinc coordination geometries.Yao, Sen; Flight, Robert M; Rouchka, Eric C; Moseley, Hunter N BProteins.2015 Aug;1470-8726009987
Defining the metabolome: size, flux, and regulation.Zamboni, Nicola; Saghatelian, Alan; Patti, Gary JMolecular cell.2015 May 21;699-70626000853
Epidermal Fatty Acid binding protein promotes skin inflammation induced by high-fat diet.Zhang, Yuwen; Li, Qiang; Rao, Enyu; Sun, Yanwen; Grossmann, Michael E; Morris, Rebecca J; Cleary, Margot P; Li, BingImmunity.2015 May 19;953-6425992864
Hepatic insulin sensitivity in healthy and prediabetic subjects: from a dual- to a single-tracer oral minimal model.Visentin, Roberto; Dalla Man, Chiara; Basu, Rita; Basu, Ananda; Rizza, Robert A; Cobelli, ClaudioAmerican journal of physiology. Endocrinology and metabolism.2015 Jul 15;E161-725991649
Oxygen concentration controls epigenetic effects in models of familial paraganglioma.Her, Yeng F; Nelson-Holte, Molly; Maher 3rd, Louis JamesPloS one.2015;25985299
Differential Role of Insulin/IGF-1 Receptor Signaling in Muscle Growth and Glucose Homeostasis.O'Neill, Brian T; Lauritzen, Hans P M M; Hirshman, Michael F; Smyth, Graham; Goodyear, Laurie J; Kahn, C RonaldCell reports.2015 May 26;1220-3525981038
Biochemical association of metabolic profile and microbiome in chronic pressure ulcer wounds.Ammons, Mary Cloud B; Morrissey, Kathryn; Tripet, Brian P; Van Leuven, James T; Han, Anne; Lazarus, Gerald S; Zenilman, Jonathan M; Stewart, Philip S; James, Garth A; Copié, ValériePloS one.2015 May 15;e012673525978400
Genomic and experimental evidence for multiple metabolic functions in the RidA/YjgF/YER057c/UK114 (Rid) protein family.Niehaus, Thomas D; Gerdes, Svetlana; Hodge-Hanson, Kelsey; Zhukov, Aleksey; Cooper, Arthur J L; ElBadawi-Sidhu, Mona; Fiehn, Oliver; Downs, Diana M; Hanson, Andrew DBMC genomics.2015 May 15;38225975565
Utilizing magnetization transfer imaging to investigate tissue remodeling in a murine model of autosomal dominant polycystic kidney disease.Kline, Timothy L; Irazabal, Maria V; Ebrahimi, Behzad; Hopp, Katharina; Udoji, Kelly N; Warner, Joshua D; Korfiatis, Panagiotis; Mishra, Prasanna K; Macura, Slobodan I; Venkatesh, Sudhakar K; Lerman, Lilach O; Harris, Peter C; Torres, Vicente E; King, Bernard F; Erickson, Bradley JMagnetic resonance in medicine.2016 Apr;25974140
FoxO1 integrates direct and indirect effects of insulin on hepatic glucose production and glucose utilization.O-Sullivan, InSug; Zhang, Wenwei; Wasserman, David H; Liew, Chong Wee; Liu, Jonathan; Paik, Jihye; DePinho, Ronald A; Stolz, Donna Beer; Kahn, C Ronald; Schwartz, Michael W; Unterman, Terry GNature communications.2015 May 12;707925963540
MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis.Tsugawa, Hiroshi; Cajka, Tomas; Kind, Tobias; Ma, Yan; Higgins, Brendan; Ikeda, Kazutaka; Kanazawa, Mitsuhiro; VanderGheynst, Jean; Fiehn, Oliver; Arita, MasanoriNature methods.2015 Jun;523-625938372
(13)C NMR Metabolomics: INADEQUATE Network Analysis.Clendinen, Chaevien S; Pasquel, Christian; Ajredini, Ramadan; Edison, Arthur SAnalytical chemistry.2015 Jun 2;5698-70625932900
Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus.Cha, Jeeyeon; Burnum-Johnson, Kristin E; Bartos, Amanda; Li, Yingju; Baker, Erin S; Tilton, Susan C; Webb-Robertson, Bobbie-Jo M; Piehowski, Paul D; Monroe, Matthew E; Jegga, Anil G; Murata, Shigeo; Hirota, Yasushi; Dey, Sudhansu KThe Journal of biological chemistry.2015 Jun 12;15337-4925931120
Cybersecurity in Artificial Pancreas Experiments.O'Keeffe, Derek T; Maraka, Spyridoula; Basu, Ananda; Keith-Hynes, Patrick; Kudva, Yogish CDiabetes technology & therapeutics.2015 Sep;25923544
Cardiac resynchronization therapy induces adaptive metabolic transitions in the metabolomic profile of heart failure.Nemutlu, Emirhan; Zhang, Song; Xu, Yi-Zhou; Terzic, Andre; Zhong, Li; Dzeja, Petras D; Cha, Yong-MeiJournal of cardiac failure.2015 Jun;460-925911126
Exercise effects on postprandial glucose metabolism in type 1 diabetes: a triple-tracer approach.Mallad, Ashwini; Hinshaw, Ling; Schiavon, Michele; Dalla Man, Chiara; Dadlani, Vikash; Basu, Rita; Lingineni, Ravi; Cobelli, Claudio; Johnson, Matthew L; Carter, Rickey; Kudva, Yogish C; Basu, AnandaAmerican journal of physiology. Endocrinology and metabolism.2015 Jun 15;E1106-1525898950
Metabolomic Analysis of Oxidative and Glycolytic Skeletal Muscles by Matrix-Assisted Laser Desorption/IonizationMass Spectrometric Imaging (MALDI MSI).Tsai, Yu-Hsuan; Garrett, Timothy J; Carter, Christy S; Yost, Richard AJournal of the American Society for Mass Spectrometry.2015 Jun;915-2325893271
Applications of Multiple Reaction Monitoring to Clinical Glycomics.Ruhaak, L Renee; Lebrilla, Carlito BChromatographia.2015 Mar 1;335-34225892741
Kernel approaches for differential expression analysis of mass spectrometry-based metabolomics data.Zhan, Xiang; Patterson, Andrew D; Ghosh, DebashisBMC bioinformatics.2015 Mar 11;7725887233
Ion Mobility and Tandem Mass Spectrometry of Phosphatidylglycerol and Bis(monoacylglycerol)phosphate (BMP).Hankin, Joseph A; Murphy, Robert C; Barkley, Robert M; Gijón, Miguel AInternational journal of mass spectrometry.2015 Feb 15;255-26325883529
Adipose Tissue Free Fatty Acid Storage In Vivo: Effects of Insulin Versus Niacin as a Control for Suppression of Lipolysis.Ali, Asem H; Mundi, Manpreet; Koutsari, Christina; Bernlohr, David A; Jensen, Michael DDiabetes.2015 Aug;2828-3525883112
NMR/MS Translator for the Enhanced Simultaneous Analysis of Metabolomics Mixtures by NMR Spectroscopy and Mass Spectrometry: Application to Human Urine.Bingol, Kerem; Brüschweiler, RafaelJournal of proteome research.2015 Jun 5;2642-825881480
Obesity Increases Mortality and Modulates the Lung Metabolome during Pandemic H1N1 Influenza Virus Infection in Mice.Milner, J Justin; Rebeles, Jenny; Dhungana, Suraj; Stewart, Delisha A; Sumner, Susan C J; Meyers, Matthew H; Mancuso, Peter; Beck, Melinda AJournal of immunology (Baltimore, Md. : 1950).2015 May 15;4846-5925862817
Effects of Dietary n-3 Fatty Acids on Hepatic and Peripheral Insulin Sensitivity in Insulin-Resistant Humans.Lalia, Antigoni Z; Johnson, Matthew L; Jensen, Michael D; Hames, Kazanna C; Port, John D; Lanza, Ian RDiabetes care.2015 Jul;1228-3725852206
Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia.Fahrmann, Johannes; Grapov, Dmitry; Yang, Jun; Hammock, Bruce; Fiehn, Oliver; Bell, Graeme I; Hara, ManamiAmerican journal of physiology. Endocrinology and metabolism.2015 Jun 1;E978-8925852003
Profiles of 21-Carbon Steroids in 21-hydroxylase Deficiency.Turcu, Adina F; Rege, Juilee; Chomic, Robert; Liu, Jiayan; Nishimoto, Hiromi K; Else, Tobias; Moraitis, Andreas G; Palapattu, Ganesh S; Rainey, William E; Auchus, Richard JThe Journal of clinical endocrinology and metabolism.2015 Jun;2283-9025850025
MetaMapR: pathway independent metabolomic network analysis incorporating unknowns.Grapov, Dmitry; Wanichthanarak, Kwanjeera; Fiehn, OliverBioinformatics (Oxford, England).2015 Aug 15;2757-6025847005
Melatonin prevents myeloperoxidase heme destruction and the generation of free iron mediated by self-generated hypochlorous acid.Shaeib, Faten; Khan, Sana N; Ali, Iyad; Najafi, Tohid; Maitra, Dhiman; Abdulhamid, Ibrahim; Saed, Ghassan M; Pennathur, Subramaniam; Abu-Soud, Husam MPloS one.2015 Apr 2;e012073725835505
Habitual physical activity and plasma metabolomic patterns distinguish individuals with low vs. high weight loss during controlled energy restriction.Piccolo, Brian D; Keim, Nancy L; Fiehn, Oliver; Adams, Sean H; Van Loan, Marta D; Newman, John WThe Journal of nutrition.2015 Apr;681-9025833772
Application of high-resolution mass spectrometry to measure low abundance isotope enrichment in individual muscle proteins.Hines, Kelly M; Ford, G Charles; Klaus, Katherine A; Irving, Brian A; Ford, Beverly L; Johnson, Kenneth L; Lanza, Ian R; Nair, K SreekumaranAnalytical and bioanalytical chemistry.2015 May;4045-5225832482
Evidence for a link between gut microbiota and hypertension in the Dahl rat.Mell, Blair; Jala, Venkatakrishna R; Mathew, Anna V; Byun, Jaeman; Waghulde, Harshal; Zhang, Youjie; Haribabu, Bodduluri; Vijay-Kumar, Matam; Pennathur, Subramaniam; Joe, BinaPhysiological genomics.2015 Jun;187-9725829393
Inhibition of soluble epoxide hydrolase attenuates hepatic fibrosis and endoplasmic reticulum stress induced by carbon tetrachloride in mice.Harris, Todd R; Bettaieb, Ahmed; Kodani, Sean; Dong, Hua; Myers, Richard; Chiamvimonvat, Nipavan; Haj, Fawaz G; Hammock, Bruce DToxicology and applied pharmacology.2015 Jul 15;102-1125827057
Dysregulation of soluble epoxide hydrolase and lipidomic profiles in anorexia nervosa.Shih, P B; Yang, J; Morisseau, C; German, J B; Zeeland, A A Scott-Van; Armando, A M; Quehenberger, O; Bergen, A W; Magistretti, P; Berrettini, W; Halmi, K A; Schork, N; Hammock, B D; Kaye, WMolecular psychiatry.2015 Mar 31;25824304
Germline mutations in ETV6 are associated with thrombocytopenia, red cell macrocytosis and predisposition to lymphoblastic leukemia.Noetzli, Leila; Lo, Richard W; Lee-Sherick, Alisa B; Callaghan, Michael; Noris, Patrizia; Savoia, Anna; Rajpurkar, Madhvi; Jones, Kenneth; Gowan, Katherine; Balduini, Carlo L; Pecci, Alessandro; Gnan, Chiara; De Rocco, Daniela; Doubek, Michael; Li, Ling; Lu, Lily; Leung, Richard; Landolt-Marticorena, Carolina; Hunger, Stephen; Heller, Paula; Gutierrez-Hartmann, Arthur; Xiayuan, Liang; Pluthero, Fred G; Rowley, Jesse W; Weyrich, Andrew S; Kahr, Walter H A; Porter, Christopher C; Di Paola, JorgeNature genetics.2015 May;535-825807284
Mass Spectrometry Analysis of Pseudomonas aeruginosa Treated with Azithromycin.Phelan, Vanessa V; Fang, Jinshu; Dorrestein, Pieter CJournal of the American Society for Mass Spectrometry.2015 Jun;873-725801585
Effects of acute exposure to increased plasma branched-chain amino acid concentrations on insulin-mediated plasma glucose turnover in healthy young subjects.Everman, Sarah; Mandarino, Lawrence J; Carroll, Chad C; Katsanos, Christos SPloS one.2015;25781654
Intake of farmed Atlantic salmon fed soybean oil increases hepatic levels of arachidonic acid-derived oxylipins and ceramides in mice.Midtbø, Lisa Kolden; Borkowska, Alison G; Bernhard, Annette; Rønnevik, Alexander Krokedal; Lock, Erik-Jan; Fitzgerald, Michael L; Torstensen, Bente E; Liaset, Bjørn; Brattelid, Trond; Pedersen, Theresa L; Newman, John W; Kristiansen, Karsten; Madsen, LiseThe Journal of nutritional biochemistry.2015 Jun;585-9525776459
Persistent Organic Pollutants Modify Gut Microbiota-Host Metabolic Homeostasis in Mice Through Aryl Hydrocarbon Receptor Activation.Zhang, Limin; Nichols, Robert G; Correll, Jared; Murray, Iain A; Tanaka, Naoki; Smith, Philip B; Hubbard, Troy D; Sebastian, Aswathy; Albert, Istvan; Hatzakis, Emmanuel; Gonzalez, Frank J; Perdew, Gary H; Patterson, Andrew DEnvironmental health perspectives.2015 Jul;679-8825768209
Developmental programming: exposure to testosterone excess disrupts steroidal and metabolic environment in pregnant sheep.Abi Salloum, B; Veiga-Lopez, A; Abbott, D H; Burant, C F; Padmanabhan, VEndocrinology.2015 Jun;2323-3725763641
Deficiency of AMPK in CD8+ T cells suppresses their anti-tumor function by inducing protein phosphatase-mediated cell death.Rao, Enyu; Zhang, Yuwen; Zhu, Ganqian; Hao, Jiaqing; Persson, Xuan-Mai T; Egilmez, Nejat K; Suttles, Jill; Li, BingOncotarget.2015 Apr 10;7944-5825760243
Diabetes Associated Metabolomic Perturbations in NOD Mice.Grapov, Dmitry; Fahrmann, Johannes; Hwang, Jessica; Poudel, Ananta; Jo, Junghyo; Periwal, Vipul; Fiehn, Oliver; Hara, ManamiMetabolomics : Official journal of the Metabolomic Society.2015 Apr;25755629
Association of UCP-3 rs1626521 with obesity and stomach functions in humans.Acosta, Andres; Camilleri, Michael; Shin, Andrea; Vazquez-Roque, Maria I; Iturrino, Johanna; Lanza, Ian R; Nair, K Sreekumaran; Burton, Duane; O'Neill, Jessica; Eckert, Deborah; Carlson, Paula; Vella, Adrian; Zinsmeister, Alan RObesity (Silver Spring, Md.).2015 Apr;898-90625755013
Maximal oxidative capacity during exercise is associated with skeletal muscle fuel selection and dynamic changes in mitochondrial protein acetylation.Overmyer, Katherine A; Evans, Charles R; Qi, Nathan R; Minogue, Catherine E; Carson, Joshua J; Chermside-Scabbo, Christopher J; Koch, Lauren G; Britton, Steven L; Pagliarini, David J; Coon, Joshua J; Burant, Charles FCell metabolism.2015 Mar 3;468-7825738461
Will the 40-gene expression classifier predict responders to EGFR targeted chemotherapy for the invasive bladder cancer patients?Kim, Jayoung; Kim, Wun-JaeAnnals of translational medicine.2015 Feb;25738138
Role of fibroblast growth factor 21 in the early stage of NASH induced by methionine- and choline-deficient diet.Tanaka, Naoki; Takahashi, Shogo; Zhang, Yuan; Krausz, Kristopher W; Smith, Philip B; Patterson, Andrew D; Gonzalez, Frank JBiochimica et biophysica acta.2015 Jul;1242-5225736301
Effect of insulin sensitizer therapy on amino acids and their metabolites.Irving, Brian A; Carter, Rickey E; Soop, Mattias; Weymiller, Audrey; Syed, Husnain; Karakelides, Helen; Bhagra, Sumit; Short, Kevin R; Tatpati, Laura; Barazzoni, Rocco; Nair, K SreekumaranMetabolism: clinical and experimental.2015 Jun;720-825733201
Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome.Chassaing, Benoit; Koren, Omry; Goodrich, Julia K; Poole, Angela C; Srinivasan, Shanthi; Ley, Ruth E; Gewirtz, Andrew TNature.2015 Mar 5;25731162
Distribution and biomarkers of carbon-14-labeled fullerene C60 ([(14) C(U)]C60 ) in female rats and mice for up to 30 days after intravenous exposure.Sumner, Susan C J; Snyder, Rodney W; Wingard, Christopher; Mortensen, Ninell P; Holland, Nathan A; Shannahan, Jonathan H; Dhungana, Suraj; Pathmasiri, Wimal; Han, Li; Lewin, Anita H; Fennell, Timothy RJournal of applied toxicology : JAT.2015 Dec;25727383
Impact of storage conditions on metabolite profiles of sputum samples from persons with cystic fibrosis.Zhao, Jiangchao; Evans, Charles R; Carmody, Lisa A; LiPuma, John JJournal of cystic fibrosis : official journal of the European Cystic Fibrosis Society.2015 Jul;468-7325725986
Metabolomics and diabetes: analytical and computational approaches.Sas, Kelli M; Karnovsky, Alla; Michailidis, George; Pennathur, SubramaniamDiabetes.2015 Mar;718-3225713200
Does our gut microbiome predict cardiovascular risk? A review of the evidence from metabolomics.Griffin, Julian L; Wang, Xinzhu; Stanley, ElizabethCirculation. Cardiovascular genetics.2015 Feb;187-9125691688
Discriminating precursors of common fragments for large-scale metabolite profiling by triple quadrupole mass spectrometry.Nikolskiy, Igor; Siuzdak, Gary; Patti, Gary JBioinformatics (Oxford, England).2015 Jun 15;2017-2325691443
Epoxide hydrolase activities and epoxy fatty acids in the mosquito Culex quinquefasciatus.Xu, Jiawen; Morisseau, Christophe; Yang, Jun; Mamatha, Dadala M; Hammock, Bruce DInsect biochemistry and molecular biology.2015 Apr;41-925686802
Association of branched and aromatic amino acids levels with metabolic syndrome and impaired fasting glucose in hypertensive patients.Weng, Liming; Quinlivan, Eoin; Gong, Yan; Beitelshees, Amber L; Shahin, Mohamed H; Turner, Stephen T; Chapman, Arlene B; Gums, John G; Johnson, Julie A; Frye, Reginald F; Garrett, Timothy J; Cooper-DeHoff, Rhonda MMetabolic syndrome and related disorders.2015 Jun;25664967
Impact of anesthesia and euthanasia on metabolomics of mammalian tissues: studies in a C57BL/6J mouse model.Overmyer, Katherine A; Thonusin, Chanisa; Qi, Nathan R; Burant, Charles F; Evans, Charles RPloS one.2015 Feb 6;e011723225658945
Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma.Wikoff, William R; Grapov, Dmitry; Fahrmann, Johannes F; DeFelice, Brian; Rom, William N; Pass, Harvey I; Kim, Kyoungmi; Nguyen, UyenThao; Taylor, Sandra L; Gandara, David R; Kelly, Karen; Fiehn, Oliver; Miyamoto, SuzanneCancer prevention research (Philadelphia, Pa.).2015 May;410-825657018
Gene expression profiling in pachyonychia congenita skin.Cao, Yu-An; Hickerson, Robyn P; Seegmiller, Brandon L; Grapov, Dmitry; Gross, Maren M; Bessette, Marc R; Phinney, Brett S; Flores, Manuel A; Speaker, Tycho J; Vermeulen, Annaleen; Bravo, Albert A; Bruckner, Anna L; Milstone, Leonard M; Schwartz, Mary E; Rice, Robert H; Kaspar, Roger LJournal of dermatological science.2015 Mar;156-6525656049
Isofunctional enzymes PAD1 and UbiX catalyze formation of a novel cofactor required by ferulic acid decarboxylase and 4-hydroxy-3-polyprenylbenzoic acid decarboxylase.Lin, Fengming; Ferguson, Kyle L; Boyer, David R; Lin, Xiaoxia Nina; Marsh, E Neil GACS chemical biology.2015 Apr 17;1137-4425647642
Site-specific glycosylation of secretory immunoglobulin A from human colostrum.Huang, Jincui; Guerrero, Andres; Parker, Evan; Strum, John S; Smilowitz, Jennifer T; German, J Bruce; Lebrilla, Carlito BJournal of proteome research.2015 Mar 6;1335-4925629924
Acute and chronic plasma metabolomic and liver transcriptomic stress effects in a mouse model with features of post-traumatic stress disorder.Gautam, Aarti; D'Arpa, Peter; Donohue, Duncan E; Muhie, Seid; Chakraborty, Nabarun; Luke, Brian T; Grapov, Dmitry; Carroll, Erica E; Meyerhoff, James L; Hammamieh, Rasha; Jett, MartiPloS one.2015 Jan 28;e011709225629821
Regulation of mammalian nucleotide metabolism and biosynthesis.Lane, Andrew N; Fan, Teresa W-MNucleic acids research.2015 Feb 27;2466-8525628363
Chemoselective detection and discrimination of carbonyl-containing compounds in metabolite mixtures by 1H-detected 15N nuclear magnetic resonance.Lane, Andrew N; Arumugam, Sengodagounder; Lorkiewicz, Pawel K; Higashi, Richard M; Laulhe, Sebastien; Nantz, Michael H; Moseley, Hunter N B; Fan, Teresa W-MMagnetic resonance in chemistry : MRC.2015 May;337-4325616249
Pyruvate carboxylase is critical for non-small-cell lung cancer proliferation.Sellers, Katherine; Fox, Matthew P; Bousamra 2nd, Michael; Slone, Stephen P; Higashi, Richard M; Miller, Donald M; Wang, Yali; Yan, Jun; Yuneva, Mariia O; Deshpande, Rahul; Lane, Andrew N; Fan, Teresa W-MThe Journal of clinical investigation.2015 Feb;687-9825607840
Defects in Mitochondrial Efficiency and H2O2 Emissions in Obese Women Are Restored to a Lean Phenotype With Aerobic Exercise Training.Konopka, Adam R; Asante, Albert; Lanza, Ian R; Robinson, Matthew M; Johnson, Matthew L; Dalla Man, Chiara; Cobelli, Claudio; Amols, Mark H; Irving, Brian A; Nair, K SDiabetes.2015 Jun;2104-1525605809
Quantitative analysis of purine nucleotides indicates that purinosomes increase de novo purine biosynthesis.Zhao, Hong; Chiaro, Christopher R; Zhang, Limin; Smith, Philip B; Chan, Chung Yu; Pedley, Anthony M; Pugh, Raymond J; French, Jarrod B; Patterson, Andrew D; Benkovic, Stephen JThe Journal of biological chemistry.2015 Mar 13;6705-1325605736
Impact of gestational bisphenol A on oxidative stress and free fatty acids: Human association and interspecies animal testing studies.Veiga-Lopez, Almudena; Pennathur, Subramaniam; Kannan, Kurunthachalam; Patisaul, Heather B; Dolinoy, Dana C; Zeng, Lixia; Padmanabhan, VasanthaEndocrinology.2015 Mar;911-2225603046
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics.Tsou, Chih-Chiang; Avtonomov, Dmitry; Larsen, Brett; Tucholska, Monika; Choi, Hyungwon; Gingras, Anne-Claude; Nesvizhskii, Alexey INature methods.2015 Mar;258-64, 7 p following 26425599550
Adipose fatty acid oxidation is required for thermogenesis and potentiates oxidative stress-induced inflammation.Lee, Jieun; Ellis, Jessica M; Wolfgang, Michael JCell reports.2015 Jan 13;266-7925578732
Aryl hydrocarbon receptor ligands in cancer: friend and foe.Murray, Iain A; Patterson, Andrew D; Perdew, Gary HNature reviews. Cancer.2014 Dec;801-1425568920
Effects of tigecycline and vancomycin administration on established Clostridium difficile infection.Theriot, Casey M; Schumacher, Cassie A; Bassis, Christine M; Seekatz, Anna M; Young, Vincent BAntimicrobial agents and chemotherapy.2015 Mar;1596-60425547352
Dynamics and establishment of Clostridium difficile infection in the murine gastrointestinal tract.Koenigsknecht, Mark J; Theriot, Casey M; Bergin, Ingrid L; Schumacher, Cassie A; Schloss, Patrick D; Young, Vincent BInfection and immunity.2015 Mar;934-4125534943
Circadian variability of insulin sensitivity: physiological input for in silico artificial pancreas.Visentin, Roberto; Dalla Man, Chiara; Kudva, Yogish C; Basu, Ananda; Cobelli, ClaudioDiabetes technology & therapeutics.2015 Jan;4201125531427
High-dose simvastatin exhibits enhanced lipid-lowering effects relative to simvastatin/ezetimibe combination therapy.Snowden, Stuart G; Grapov, Dmitry; Settergren, Magnus; D'Alexandri, Fabio Luiz; Haeggstrom, Jesper Z; Fiehn, Oliver; Hyotylainen, Tuulia; Pedersen, Theresa L; Newman, John W; Oresic, Matej; Pernow, John; Wheelock, Craig ECirculation. Cardiovascular genetics.2014 Dec;955-6425516625
Differential Effect of Endurance Training on Mitochondrial Protein Damage, Degradation, and Acetylation in the Context of Aging.Johnson, Matthew L; Irving, Brian A; Lanza, Ian R; Vendelbo, Mikkel H; Konopka, Adam R; Robinson, Matthew M; Henderson, Gregory C; Klaus, Katherine A; Morse, Dawn M; Heppelmann, Carrie; Bergen 3rd, H Robert; Dasari, Surendra; Schimke, Jill M; Jakaitis, Daniel R; Nair, K SreekumaranThe journals of gerontology. Series A, Biological sciences and medical sciences.2014 Dec 10;25504576
Intestinal farnesoid X receptor signaling promotes nonalcoholic fatty liver disease.Jiang, Changtao; Xie, Cen; Li, Fei; Zhang, Limin; Nichols, Robert G; Krausz, Kristopher W; Cai, Jingwei; Qi, Yunpeng; Fang, Zhong-Ze; Takahashi, Shogo; Tanaka, Naoki; Desai, Dhimant; Amin, Shantu G; Albert, Istvan; Patterson, Andrew D; Gonzalez, Frank JThe Journal of clinical investigation.2015 Jan;386-40225500885
Pharmacometabolomics of l-carnitine treatment response phenotypes in patients with septic shock.Puskarich, Michael A; Finkel, Michael A; Karnovsky, Alla; Jones, Alan E; Trexel, Julie; Harris, Brooke N; Stringer, Kathleen AAnnals of the American Thoracic Society.2015 Jan;46-5625496487
Autonomous metabolomics for rapid metabolite identification in global profiling.Benton, H Paul; Ivanisevic, Julijana; Mahieu, Nathaniel G; Kurczy, Michael E; Johnson, Caroline H; Franco, Lauren; Rinehart, Duane; Valentine, Elizabeth; Gowda, Harsha; Ubhi, Baljit K; Tautenhahn, Ralf; Gieschen, Andrew; Fields, Matthew W; Patti, Gary J; Siuzdak, GaryAnalytical chemistry.2015 Jan 20;884-9125496351
Cardiac steatosis potentiates angiotensin II effects in the heart.Glenn, Denis J; Cardema, Michelle C; Ni, Wei; Zhang, Yan; Yeghiazarians, Yerem; Grapov, Dmitry; Fiehn, Oliver; Gardner, David GAmerican journal of physiology. Heart and circulatory physiology.2015 Feb 15;H339-5025485904
Diet and feeding pattern affect the diurnal dynamics of the gut microbiome.Zarrinpar, Amir; Chaix, Amandine; Yooseph, Shibu; Panda, SatchidanandaCell metabolism.2014 Dec 2;1006-1725470548
Commensal microbiota is hepatoprotective and prevents liver fibrosis in mice.Mazagova, Magdalena; Wang, Lirui; Anfora, Andrew T; Wissmueller, Max; Lesley, Scott A; Miyamoto, Yukiko; Eckmann, Lars; Dhungana, Suraj; Pathmasiri, Wimal; Sumner, Susan; Westwater, Caroline; Brenner, David A; Schnabl, BerndFASEB journal : official publication of the Federation of American Societies for Experimental Biology.2015 Mar;1043-5525466902
Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study.Shellman, Erin R; Chen, Yu; Lin, Xiaoxia; Burant, Charles F; Schnell, SantiagoComputational biology and chemistry.2014 Sep 21;242-25025462333
Glutamine oxidation maintains the TCA cycle and cell survival during impaired mitochondrial pyruvate transport.Yang, Chendong; Ko, Bookyung; Hensley, Christopher T; Jiang, Lei; Wasti, Ajla T; Kim, Jiyeon; Sudderth, Jessica; Calvaruso, Maria Antonietta; Lumata, Lloyd; Mitsche, Matthew; Rutter, Jared; Merritt, Matthew E; DeBerardinis, Ralph JMolecular cell.2014 Nov 6;414-2425458842
A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis.Frelin, Oceane; Huang, Lili; Hasnain, Ghulam; Jeffryes, James G; Ziemak, Michael J; Rocca, James R; Wang, Bing; Rice, Jennifer; Roje, Sanja; Yurgel, Svetlana N; Gregory 3rd, Jesse F; Edison, Arthur S; Henry, Christopher S; de Crecy-Lagard, Valerie; Hanson, Andrew DThe Biochemical journal.2015 Feb 15;137-4525431972
The need for reflective consideration of an integrative understanding of cardiovascular consequences to PVP formulated C60 exposure.Wingard, Christopher J; Holland, Nathan A; Thompson, Leslie C; Brown, Jared M; Lewin, Anita H; Sumner, Susan J; Fennell, Timothy R; Vidanapathirana, Achini KToxicological sciences : an official journal of the Society of Toxicology.2014 Oct;327-825422842
Top-down analysis of highly post-translationally modified peptides by fourier transform ion cyclotron resonance mass spectrometry.Guerrero, Andres; Lerno, Larry; Barile, Daniela; Lebrilla, Carlito BJournal of the American Society for Mass Spectrometry.2015 Mar;453-925404158
Effects of soluble epoxide hydrolase deficiency on acute pancreatitis in mice.Bettaieb, Ahmed; Chahed, Samah; Tabet, George; Yang, Jun; Morisseau, Christophe; Griffey, Stephen; Hammock, Bruce D; Haj, Fawaz GPloS one.2014;e11301925402489
The use of metabolomics in population-based research.Su, L Joseph; Fiehn, Oliver; Maruvada, Padma; Moore, Steven C; O'Keefe, Stephen J; Wishart, David S; Zanetti, Krista AAdvances in nutrition (Bethesda, Md.).2014 Nov;785-825398741
(1)H NMR Metabolomics Study of Metastatic Melanoma in C57BL/6J Mouse Spleen.Wang, Xuan; Hu, Mary; Feng, Ju; Liu, Maili; Hu, Jian ZhiMetabolomics : Official journal of the Metabolomic Society.2014 Dec;1129-114425383071
Relative roles of ABCG5/ABCG8 in liver and intestine.Wang, Jin; Mitsche, Matthew A; Lutjohann, Dieter; Cohen, Jonathan C; Xie, Xiao-Song; Hobbs, Helen HJournal of lipid research.2015 Feb;319-3025378657
Identifying individual differences of fluoxetine response in juvenile rhesus monkeys by metabolite profiling.He, Y; Hogrefe, C E; Grapov, D; Palazoglu, M; Fiehn, O; Turck, C W; Golub, M STranslational psychiatry.2014;e47825369145
LC-MS metabolomics of psoriasis patients reveals disease severity-dependent increases in circulating amino acids that are ameliorated by anti-TNF* treatment.Kamleh, Muhammad Anas; Snowden, Stuart G; Grapov, Dmitry; Blackburn, Gavin J; Watson, David G; Xu, Ning; Stahle, Mona; Wheelock, Craig EJournal of proteome research.2015 Jan 2;557-6625361234
Rapid-throughput glycomics applied to human milk oligosaccharide profiling for large human studies.Totten, Sarah M; Wu, Lauren D; Parker, Evan A; Davis, Jasmine C C; Hua, Serenus; Stroble, Carol; Ruhaak, L Renee; Smilowitz, Jennifer T; German, J Bruce; Lebrilla, Carlito BAnalytical and bioanalytical chemistry.2014 Dec;7925-3525358913
Urinary metabolite profiling combined with computational analysis predicts interstitial cystitis-associated candidate biomarkers.Wen, He; Lee, Tack; You, Sungyong; Park, Soo-Hwan; Song, Hosook; Eilber, Karyn S; Anger, Jennifer T; Freeman, Michael R; Park, Sunghyouk; Kim, JayoungJournal of proteome research.2015 Jan 2;541-825353990
LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries.Kind, Tobias; Okazaki, Yozo; Saito, Kazuki; Fiehn, OliverAnalytical chemistry.2014 Nov 18;11024-725340521
The human colostrum whey proteome is altered in gestational diabetes mellitus.Grapov, Dmitry; Lemay, Danielle G; Weber, Darren; Phinney, Brett S; Azulay Chertok, Ilana R; Gho, Deborah S; German, J Bruce; Smilowitz, Jennifer TJournal of proteome research.2015 Jan 2;512-2025338220
Unified and isomer-specific NMR metabolomics database for the accurate analysis of (13)C-(1)H HSQC spectra.Bingol, Kerem; Li, Da-Wei; Bruschweiler-Li, Lei; Cabrera, Oscar A; Megraw, Timothy; Zhang, Fengli; Bruschweiler, RafaelACS chemical biology.2015 Feb 20;452-925333826
Decreased bacterial diversity characterizes the altered gut microbiota in patients with psoriatic arthritis, resembling dysbiosis in inflammatory bowel disease.Scher, Jose U; Ubeda, Carles; Artacho, Alejandro; Attur, Mukundan; Isaac, Sandrine; Reddy, Soumya M; Marmon, Shoshana; Neimann, Andrea; Brusca, Samuel; Patel, Tejas; Manasson, Julia; Pamer, Eric G; Littman, Dan R; Abramson, Steven BArthritis & rheumatology (Hoboken, N.J.).2015 Jan;25319745
Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry.Cajka, Tomas; Fiehn, OliverTrends in analytical chemistry : TRAC.2014 Oct 1;192-20625309011
Development of an analytical method for assessment of silver nanoparticle content in biological matrices by inductively coupled plasma mass spectrometry.Poitras, Eric P; Levine, Michael A; Harrington, James M; Essader, Amal S; Fennell, Timothy R; Snyder, Rodney W; Black, Sherry L; Sumner, Susan S; Levine, Keith EBiological trace element research.2015 Feb;184-9225308764
Cold adaptation shapes the robustness of metabolic networks in Drosophila melanogaster.Williams, Caroline M; Watanabe, Miki; Guarracino, Mario R; Ferraro, Maria B; Edison, Arthur S; Morgan, Theodore J; Boroujerdi, Arezue F B; Hahn, Daniel AEvolution; international journal of organic evolution.2014 Dec;3505-2325308124
Time lag of glucose from intravascular to interstitial compartment in type 1 diabetes.Basu, Ananda; Dube, Simmi; Veettil, Sona; Slama, Michael; Kudva, Yogish C; Peyser, Thomas; Carter, Rickey E; Cobelli, Claudio; Basu, RitaJournal of diabetes science and technology.2015 Jan;63-825305282
11*-hydroxysteroid dehydrogenase types 1 and 2 activity in subcutaneous adipose tissue in humans: implications in obesity and diabetes.Dube, Simmi; Norby, Barbara J; Pattan, Vishwanath; Carter, Rickey E; Basu, Ananda; Basu, RitaThe Journal of clinical endocrinology and metabolism.2015 Jan;E70-625303491
Bifidobacterium longum subspecies infantis: champion colonizer of the infant gut.Underwood, Mark A; German, J Bruce; Lebrilla, Carlito B; Mills, David APediatric research.2015 Jan;229-3525303277
The urinary metabolomics profile of an Italian autistic children population and their unaffected siblings.Noto, Antonio; Fanos, Vassilios; Barberini, Luigi; Grapov, Dmitry; Fattuoni, Claudia; Zaffanello, Marco; Casanova, Andrea; Fenu, Gianni; De Giacomo, Andrea; De Angelis, Maria; Moretti, Corrado; Papoff, Paola; Ditonno, Raffaella; Francavilla, RuggieroThe journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians.2014 Oct;46-5225284177
Urinary metabolomics (GC-MS) reveals that low and high birth weight infants share elevated inositol concentrations at birth.Barberini, Luigi; Noto, Antonio; Fattuoni, Claudia; Grapov, Dmitry; Casanova, Andrea; Fenu, Gianni; Gaviano, Mauro; Carboni, Roberta; Ottonello, Giovanni; Crisafulli, Maurizio; Fanos, Vassilios; Dessi, AngelicaThe journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians.2014 Oct;20-625284173
Deletion of ELOVL6 blocks the synthesis of oleic acid but does not prevent the development of fatty liver or insulin resistance.Moon, Young-Ah; Ochoa, Courtney R; Mitsche, Matthew A; Hammer, Robert E; Horton, Jay DJournal of lipid research.2014 Dec;2597-60525281760
Metabolomics insights into pathophysiological mechanisms of interstitial cystitis.Fiehn, Oliver; Kim, JayoungInternational neurourology journal.2014 Sep;25279237
Stable isotope-labeled tracers for metabolic pathway elucidation by GC-MS and FT-MS.Higashi, Richard M; Fan, Teresa W-M; Lorkiewicz, Pawel K; Moseley, Hunter N B; Lane, Andrew NMethods in molecular biology (Clifton, N.J.).2014;147-6725270929
The hereditary spastic paraplegia-related enzyme DDHD2 is a principal brain triglyceride lipase.Inloes, Jordon M; Hsu, Ku-Lung; Dix, Melissa M; Viader, Andreu; Masuda, Kim; Takei, Thais; Wood, Malcolm R; Cravatt, Benjamin FProceedings of the National Academy of Sciences of the United States of America.2014 Oct 14;14924-925267624
MS2Analyzer: A software for small molecule substructure annotations from accurate tandem mass spectra.Ma, Yan; Kind, Tobias; Yang, Dawei; Leon, Carlos; Fiehn, OliverAnalytical chemistry.2014 Nov 4;10724-3125263576
Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice.Chen, Peng; Torralba, Manolito; Tan, Justin; Embree, Mallory; Zengler, Karsten; Stärkel, Peter; van Pijkeren, Jan-Peter; DePew, Jessica; Loomba, Rohit; Ho, Samuel B; Bajaj, Jasmohan S; Mutlu, Ece A; Keshavarzian, Ali; Tsukamoto, Hidekazu; Nelson, Karen E; Fouts, Derrick E; Schnabl, BerndGastroenterology.2015 Jan;25239591
Different mechanisms of acute versus long-term antihypertensive effects of soluble epoxide hydrolase inhibition: studies in Cyp1a1-Ren-2 transgenic rats.Sporkova, Alexandra; Jichova, Sarka; Huskova, Zuzana; Kopkan, Libor; Nishiyama, Akira; Hwang, Sung H; Hammock, Bruce D; Imig, John D; Kompanowska-Jezierska, Elzbieta; Sadowski, Janusz; Kramer, Herbert J; Cervenka, LudekClinical and experimental pharmacology & physiology.2014 Dec;1003-1325224811
High insulin combined with essential amino acids stimulates skeletal muscle mitochondrial protein synthesis while decreasing insulin sensitivity in healthy humans.Robinson, Matthew M; Soop, Mattias; Sohn, Tae Seo; Morse, Dawn M; Schimke, Jill M; Klaus, Katherine A; Nair, K SreekumaranThe Journal of clinical endocrinology and metabolism.2014 Dec;E2574-8325222757
Disruption of heme-peptide covalent cross-linking in mammalian peroxidases by hypochlorous acid.Abu-Soud, Husam M; Maitra, Dhiman; Shaeib, Faten; Khan, Sana N; Byun, Jaeman; Abdulhamid, Ibrahim; Yang, Zhe; Saed, Ghassan M; Diamond, Michael P; Andreana, Peter R; Pennathur, SubramaniamJournal of inorganic biochemistry.2014 Nov;245-5425193127
Effects of increased free fatty acid availability on adipose tissue fatty acid storage in men.Mundi, Manpreet S; Koutsari, Chistina; Jensen, Michael DThe Journal of clinical endocrinology and metabolism.2014 Dec;E2635-4225192251
Crucial role of macrophage selenoproteins in experimental colitis.Kaushal, Naveen; Kudva, Avinash K; Patterson, Andrew D; Chiaro, Christopher; Kennett, Mary J; Desai, Dhimant; Amin, Shantu; Carlson, Bradley A; Cantorna, Margherita T; Prabhu, K SandeepJournal of immunology (Baltimore, Md. : 1950).2014 Oct 1;3683-9225187657
Role of white adipose lipolysis in the development of NASH induced by methionine- and choline-deficient diet.Tanaka, Naoki; Takahashi, Shogo; Fang, Zhong-Ze; Matsubara, Tsutomu; Krausz, Kristopher W; Qu, Aijuan; Gonzalez, Frank JBiochimica et biophysica acta.2014 Nov;25178843
Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma.Lee, Do Yup; Kind, Tobias; Yoon, Young-Ran; Fiehn, Oliver; Liu, Kwang-HyeonAnalytical and bioanalytical chemistry.2014 Nov;7275-8625171832
Lipoxin generation is related to soluble epoxide hydrolase activity in severe asthma.Ono, Emiko; Dutile, Stefanie; Kazani, Shamsah; Wechsler, Michael E; Yang, Jun; Hammock, Bruce D; Douda, David Nobuhiro; Tabet, Yacine; Khaddaj-Mallat, Rayan; Sirois, Marco; Sirois, Chantal; Rizcallah, Edmond; Rousseau, Eric; Martin, Richard; Sutherland, E Rand; Castro, Mario; Jarjour, Nizar N; Israel, Elliot; Levy, Bruce D; National Heart, Lung, and Blood Institute's Asthma Clinical Research NetworkAmerican journal of respiratory and critical care medicine.2014 Oct 15;886-9725162465
Credentialing features: a platform to benchmark and optimize untargeted metabolomic methods.Mahieu, Nathaniel Guy; Huang, Xiaojing; Chen, Ying-Jr; Patti, Gary JAnalytical chemistry.2014 Oct 7;9583-925160088
Microbial Determinants of Biochemical Individuality and Their Impact on Toxicology and Pharmacology.Patterson, Andrew D; Turnbaugh, Peter JCell metabolism2014 Aug 20NULL25156450
Glutamate enrichment as new diagnostic opportunity in breast cancer.Budczies, Jan; Pfitzner, Berit M; Gyorffy, Balazs; Winzer, Klaus-Jurgen; Radke, Cornelia; Dietel, Manfred; Fiehn, Oliver; Denkert, CarstenInternational journal of cancer. Journal international du cancer.2015 Apr 1;1619-2825155347
Inflammation triggers production of dimethylsphingosine from oligodendrocytes.Chen, Y-J; Hill, S; Huang, H; Taraboletti, A; Cho, K; Gallo, R; Manchester, M; Shriver, L P; Patti, G JNeuroscience.2014 Oct 24;113-2125151189
Cardioprotection by controlling hyperamylinemia in a "humanized" diabetic rat model.Despa, Sanda; Sharma, Savita; Harris, Todd R; Dong, Hua; Li, Ning; Chiamvimonvat, Nipavan; Taegtmeyer, Heinrich; Margulies, Kenneth B; Hammock, Bruce D; Despa, FlorinJournal of the American Heart Association2014 AugNULL25146704
Reemergence of hedgehog mediates epithelial-mesenchymal crosstalk in pulmonary fibrosis.Hu, Biao; Liu, Jianhua; Wu, Zhe; Liu, Tianju; Ullenbruch, Matthew R; Ding, Lin; Henke, Craig A; Bitterman, Peter B; Phan, Sem HAmerican journal of respiratory cell and molecular biology.2015 Apr;418-2825140582
¹³C NMR metabolomics: applications at natural abundance.Clendinen, Chaevien S; Lee-McMullen, Brittany; Williams, Caroline M; Stupp, Gregory S; Vandenborne, Krista; Hahn, Daniel A; Walter, Glenn A; Edison, Arthur SAnalytical chemistry.2014 Sep 16;9242-5025140385
Development and in silico evaluation of large-scale metabolite identification methods using functional group detection for metabolomics.Mitchell, Joshua M; Fan, Teresa W-M; Lane, Andrew N; Moseley, Hunter N BFrontiers in genetics.2014;23725120557
Catecholamine-resistant hypotension and myocardial performance following patent ductus arteriosus ligation.Noori, S; McNamara, P; Jain, A; Lavoie, P M; Wickremasinghe, A; Merritt, T A; Solomon, T; Sekar, K; Attridge, J T; Swanson, J R; Gillam-Krakauer, M; Reese, J; Poindexter, B B; Brook, M; Auchus, R J; Clyman, R I; PDA Ligation/Hypotension Trial InvestigatorsJournal of perinatology : official journal of the California Perinatal Association.2015 Feb;123-725118721
Structural analysis of N- and O-glycans using ZIC-HILIC/dialysis coupled to NMR detection.Qu, Yi; Feng, Ju; Deng, Shuang; Cao, Li; Zhang, Qibin; Zhao, Rui; Zhang, Zhaorui; Jiang, Yuxuan; Zink, Erika M; Baker, Scott E; Lipton, Mary S; Pasa-Tolic, Ljiljana; Hu, Jian Zhi; Wu, SiFungal genetics and biology : FG & B.2014 Nov;207-1525117693
Frataxin deficiency increases cyclooxygenase 2 and prostaglandins in cell and animal models of Friedreich's ataxia.Hayashi, Genki; Shen, Yan; Pedersen, Theresa L; Newman, John W; Pook, Mark; Cortopassi, GinoHuman molecular genetics.2014 Dec 20;6838-4725104852
Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry.Crowell, Kevin L; Baker, Erin S; Payne, Samuel H; Ibrahim, Yehia M; Monroe, Matthew E; Slysz, Gordon W; LaMarche, Brian L; Petyuk, Vladislav A; Piehowski, Paul D; Danielson 3rd, William F; Anderson, Gordon A; Smith, Richard DInternational journal of mass spectrometry.2013 Nov 15;312-31725089116
PVP formulated fullerene (C60) increases Rho-kinase dependent vascular tissue contractility in pregnant Sprague Dawley rats.Vidanapathirana, Achini K; Thompson, Leslie C; Mann, Erin E; Odom, Jillian T; Holland, Nathan A; Sumner, Susan J; Han, Li; Lewin, Anita H; Fennell, Timothy R; Brown, Jared M; Wingard, Christopher JReproductive toxicology (Elmsford, N.Y.).2014 Nov;86-10025088243
Perinatal exposure of mice to the pesticide DDT impairs energy expenditure and metabolism in adult female offspring.La Merrill, Michele; Karey, Emma; Moshier, Erin; Lindtner, Claudia; La Frano, Michael R; Newman, John W; Buettner, ChristophPloS one.2014;e10333725076055
Effects of delayed gastric emptying on postprandial glucose kinetics, insulin sensitivity, and ?-cell function.Hinshaw, Ling; Schiavon, Michele; Mallad, Ashwini; Man, Chiara Dalla; Basu, Rita; Bharucha, Adil E; Cobelli, Claudio; Carter, Rickey E; Basu, Ananda; Kudva, Yogish CAmerican journal of physiology. Endocrinology and metabolism.2014 Sep 15;E494-50225074985
Proteasome function is required for platelet production.Shi, Dallas S; Smith, Matthew C P; Campbell, Robert A; Zimmerman, Patrick W; Franks, Zechariah B; Kraemer, Bjorn F; Machlus, Kellie R; Ling, Jing; Kamba, Patrick; Schwertz, Hansjorg; Rowley, Jesse W; Miles, Rodney R; Liu, Zhi-Jian; Sola-Visner, Martha; Italiano Jr, Joseph E; Christensen, Hilary; Kahr, Walter H A; Li, Dean Y; Weyrich, Andrew SThe Journal of clinical investigation.2014 Sep;3757-6625061876
Thermally-Induced Substrate Release Via Intramolecular Cyclizations of Amino Esters and Amino Carbonates.Knipp, Ralph J; Estrada, Rosendo; Sethu, Palaniappan; Nantz, Michael HTetrahedron2014 May 13422-342925061237
Tracing flavonoid degradation in grapes by MS filtering with stable isotopes.Chassy, Alexander W; Bueschl, Christoph; Lee, Hyeyoung; Lerno, Larry; Oberholster, Anita; Barile, Daniela; Schuhmacher, Rainer; Waterhouse, Andrew LFood chemistry2015 Jan 1448-5525053079
The effect of vagal nerve blockade using electrical impulses on glucose metabolism in nondiabetic subjects.Sathananthan, Matheni; Ikramuddin, Sayeed; Swain, James M; Shah, Meera; Piccinini, Francesca; Dalla Man, Chiara; Cobelli, Claudio; Rizza, Robert A; Camilleri, Michael; Vella, AdrianDiabetes, metabolic syndrome and obesity : targets and therapy.2014;305-1225050073
Fasting increases human skeletal muscle net phenylalanine release and this is associated with decreased mTOR signaling.Vendelbo, Mikkel Holm; Moller, Andreas Buch; Christensen, Britt; Nellemann, Birgitte; Clasen, Berthil Frederik Forrest; Nair, K Sreekumaran; Jorgensen, Jens Otto Lunde; Jessen, Niels; Moller, NielsPloS one.2014;e10203125020061
Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine.Zallot, Remi; Yazdani, Mohammad; Goyer, Aymeric; Ziemak, Michael J; Guan, Jiahn-Chou; McCarty, Donald R; de Crecy-Lagard, Valerie; Gerdes, Svetlana; Garrett, Timothy J; Benach, Jordi; Hunt, John F; Shintani, David K; Hanson, Andrew DThe Biochemical journal.2014 Oct 1;145-5525014715
Differential incorporation of glucose into biomass during Warburg metabolism.Chen, Ying-Jr; Huang, Xiaojing; Mahieu, Nathaniel G; Cho, Kevin; Schaefer, Jacob; Patti, Gary JBiochemistry.2014 Jul 29;4755-725010499
Enhanced detection and identification in metabolomics by use of LC-MS/MS untargeted analysis in combination with gas-phase fractionation.Calder�n-Santiago, M�nica; Priego-Capote, Feliciano; Luque de Castro, Mar�a DAnalytical chemistry2014 Aug 524992377
Citrulline stimulates muscle protein synthesis in the post-absorptive state in healthy people fed a low-protein diet - A pilot study.Jourdan, Marion; Nair, K Sreekumaran; Carter, Rickey E; Schimke, Jill; Ford, G Charles; Marc, Julie; Aussel, Christian; Cynober, LucClinical nutrition (Edinburgh, Scotland).2015 Jun;449-5624972455
Studies of Secondary Melanoma on C57BL/6J Mouse Liver Using 1H NMR Metabolomics.Feng, Ju; Isern, Nancy G; Burton, Sarah D; Hu, Jian ZhiMetabolites.2013;1011-3524958263
Tryptophan catabolism restricts IFN-ýý-expressing neutrophils and Clostridium difficile immunopathology.El-Zaatari, Mohamad; Chang, Yu-Ming; Zhang, Min; Franz, Matthew; Shreiner, Andrew; McDermott, Andrew J; van der Sluijs, Koenraad F; Lutter, Rene; Grasberger, Helmut; Kamada, Nobuhiko; Young, Vincent B; Huffnagle, Gary B; Kao, John YJournal of immunology (Baltimore, Md. : 1950)2014 Jul 15807-1624935925
Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses.Gowda, Harsha; Ivanisevic, Julijana; Johnson, Caroline H; Kurczy, Michael E; Benton, H Paul; Rinehart, Duane; Nguyen, Thomas; Ray, Jayashree; Kuehl, Jennifer; Arevalo, Bernardo; Westenskow, Peter D; Wang, Junhua; Arkin, Adam P; Deutschbauer, Adam M; Patti, Gary J; Siuzdak, GaryAnalytical chemistry.2014 Jul 15;6931-924934772
Soluble epoxide hydrolase inhibitor attenuates inflammation and airway hyperresponsiveness in mice.Yang, Jun; Bratt, Jennifer; Franzi, Lisa; Liu, Jun-Yan; Zhang, Guodong; Zeki, Amir A; Vogel, Christoph F A; Williams, Keisha; Dong, Hua; Lin, Yanping; Hwang, Sung Hee; Kenyon, Nicholas J; Hammock, Bruce DAmerican journal of respiratory cell and molecular biology.2015 Jan;46-5524922186
Analysis of Human Serum and Whole Blood for Mineral Content by ICP-MS and ICP-OES: Development of a Mineralomics Method.Harrington, James M; Young, Daniel J; Essader, Amal S; Sumner, Susan J; Levine, Keith EBiological trace element research2014 Jun 11NULL24917052
Metabolomic data streaming for biology-dependent data acquisition.Rinehart, Duane; Johnson, Caroline H; Nguyen, Thomas; Ivanisevic, Julijana; Benton, H Paul; Lloyd, Jessica; Arkin, Adam P; Deutschbauer, Adam M; Patti, Gary J; Siuzdak, GaryNature biotechnology2014 Jun524-724911492
A tour through the transcriptional landscape of platelets.Schubert, Sebastian; Weyrich, Andrew S; Rowley, Jesse WBlood2014 Jul 24493-50224904119
Comparison of the effects of long-chain omega-3 fatty acid supplementation on plasma levels of free and esterified oxylipins.Schebb, Nils Helge; Ostermann, Annika I; Yang, Jun; Hammock, Bruce D; Hahn, Andreas; Schuchardt, Jan PhilippProstaglandins & other lipid mediators2014 May 29NULL24880049
Profiling thiol metabolites and quantification of cellular glutathione using FT-ICR-MS spectrometry.Gori, Sadakatali S; Lorkiewicz, Pawel; Ehringer, Daniel S; Belshoff, Alex C; Higashi, Richard M; Fan, Teresa W-M; Nantz, Michael HAnalytical and bioanalytical chemistry2014 Jul4371-924858467
Microbiota, oral microbiome, and pancreatic cancer.Michaud, Dominique S; Izard, JacquesCancer journal (Sudbury, Mass.)2014 May-Jun203-624855008
A systems biology approach utilizing a mouse diversity panel identifies genetic differences influencing isoniazid-induced microvesicular steatosis.Church, Rachel J; Wu, Hong; Mosedale, Merrie; Sumner, Susan J; Pathmasiri, Wimal; Kurtz, Catherine L; Pletcher, Mathew T; Eaddy, John S; Pandher, Karamjeet; Singer, Monica; Batheja, Ameesha; Watkins, Paul B; Adkins, Karissa; Harrill, Alison HToxicological sciences : an official journal of the Society of Toxicology2014 Aug 1481-9224848797
Protection from hypertension in mice by the Mediterranean diet is mediated by nitro fatty acid inhibition of soluble epoxide hydrolase.Charles, Rebecca L; Rudyk, Olena; Prysyazhna, Oleksandra; Kamynina, Alisa; Yang, Jun; Morisseau, Christophe; Hammock, Bruce D; Freeman, Bruce A; Eaton, PhilipProceedings of the National Academy of Sciences of the United States of America2014 Jun 38167-7224843165
Age- and diet-associated metabolome remodeling characterizes the aging process driven by damage accumulation.Avanesov, Andrei S; Ma, Siming; Pierce, Kerry A; Yim, Sun Hee; Lee, Byung Cheon; Clish, Clary B; Gladyshev, Vadim NeLife2014e0207724843015
Neutrophil extracellular trap-derived enzymes oxidize high-density lipoprotein: An additional proatherogenic mechanism in systemic lupus erythematosus.Smith, Carolyne K; Vivekanandan-Giri, Anuradha; Tang, Chongren; Knight, Jason S; Mathew, Anna; Padilla, Robin L; Gillespie, Brenda W; Carmona-Rivera, Carmelo; Liu, Xiaodan; Subramanian, Venkataraman; Hasni, Sarfaraz; Thompson, Paul R; Heinecke, Jay W; SarArthritis & rheumatology (Hoboken, N.J.)2014 May 16NULL24838349
Targeted metabolomics and mathematical modeling demonstrate that vitamin B-6 restriction alters one-carbon metabolism in cultured HepG2 cells.da Silva, Vanessa R; Ralat, Maria A; Quinlivan, Eoin P; DeRatt, Barbara N; Garrett, Timothy J; Chi, Yueh-Yun; Frederik Nijhout, H; Reed, Michael C; Gregory 3rd, Jesse FAmerican journal of physiology. Endocrinology and metabolism.2014 Jul 1;24824655
After the feature presentation: technologies bridging untargeted metabolomics and biology.Cho, Kevin; Mahieu, Nathaniel G; Johnson, Stephen L; Patti, Gary JCurrent opinion in biotechnology2014 May 5143-14824816495
Protein intake and exercise for optimal muscle function with aging: recommendations from the ESPEN Expert Group.Deutz, Nicolaas E P; Bauer, Jurgen M; Barazzoni, Rocco; Biolo, Gianni; Boirie, Yves; Bosy-Westphal, Anja; Cederholm, Tommy; Cruz-Jentoft, Alfonso; Krznaric, Zeljko; Nair, K Sreekumaran; Singer, Pierre; Teta, Daniel; Tipton, Kevin; Calder, Philip CClinical nutrition (Edinburgh, Scotland).2014 Dec;929-3624814383
Quantitative NMR Metabolite Profiling of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus Discriminates between Biofilm and Planktonic Phenotypes.Ammons, Mary Cloud B; Tripet, Brian P; Carlson, Ross P; Kirker, Kelly R; Gross, Michael A; Stanisich, Jessica J; Copie, ValerieJournal of proteome research2014 Jun 62973-8524809402
Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions.Kol, Amir; Foutouhi, Soraya; Walker, Naomi J; Kong, Nguyet T; Weimer, Bart C; Borjesson, Dori LStem cells and development.2014 Aug 15;1831-4324803072
Detecting and Removing Data Artifacts in Hadamard Transform Ion Mobility-Mass Spectrometry Measurements.Prost, Spencer A; Crowell, Kevin L; Baker, Erin S; Ibrahim, Yehia M; Clowers, Brian H; Monroe, Matthew E; Anderson, Gordon A; Smith, Richard D; Payne, Samuel HJournal of the American Society for Mass Spectrometry2014 May 6NULL24796262
Improving Ion Mobility Measurement Sensitivity by Utilizing Helium in an Ion Funnel Trap.Ibrahim, Yehia M; Garimella, Sandilya V B; Tolmachev, Aleksey V; Baker, Erin S; Smith, Richard DAnalytical chemistry2014 May 13NULL24786390
Customized Metabolomics Database for the Analysis of NMR (1)H-(1)H TOCSY and (13)C-(1)H HSQC-TOCSY Spectra of Complex Mixtures.Bingol, Kerem; Bruschweiler-Li, Lei; Li, Da-Wei; Bruschweiler, RafaelAnalytical chemistry2014 May 20NULL24773139
A mitochondrial RNAi screen defines cellular bioenergetic determinants and identifies an adenylate kinase as a key regulator of ATP levels.Lanning, Nathan J; Looyenga, Brendan D; Kauffman, Audra L; Niemi, Natalie M; Sudderth, Jessica; DeBerardinis, Ralph J; MacKeigan, Jeffrey PCell reports2014 May 8907-1724767988
mTORC1-independent reduction of retinal protein synthesis in type 1 diabetes.Fort, Patrice E; Losiewicz, Mandy K; Pennathur, Subramaniam; Jefferson, Leonard S; Kimball, Scot R; Abcouwer, Steven F; Gardner, Thomas WDiabetes.2014 Sep;3077-9024740573
Noninvasive urinary metabolomic profiling identifies diagnostic and prognostic markers in lung cancer.Mathe, Ewy A; Patterson, Andrew D; Haznadar, Majda; Manna, Soumen K; Krausz, Kristopher W; Bowman, Elise D; Shields, Peter G; Idle, Jeffrey R; Smith, Philip B; Anami, Katsuhiro; Kazandjian, Dickran G; Hatzakis, Emmanuel; Gonzalez, Frank J; Harris, Curtis Cancer research2014 Jun 153259-7024736543
Targeting lactate dehydrogenase--a inhibits tumorigenesis and tumor progression in mouse models of lung cancer and impacts tumor-initiating cells.Xie, Han; Hanai, Jun-Ichi; Ren, Jian-Guo; Kats, Lev; Burgess, Kerri; Bhargava, Parul; Signoretti, Sabina; Billiard, Julia; Duffy, Kevin J; Grant, Aaron; Wang, Xiaoen; Lorkiewicz, Pawel K; Schatzman, Sabrina; Bousamra 2nd, Michael; Lane, Andrew N; Higashi,Cell metabolism2014 May 6795-80924726384
Testing the role of myeloid cell glucose flux in inflammation and atherosclerosis.Nishizawa, Tomohiro; Kanter, Jenny E; Kramer, Farah; Barnhart, Shelley; Shen, Xia; Vivekanandan-Giri, Anuradha; Wall, Valerie Z; Kowitz, Jason; Devaraj, Sridevi; O'Brien, Kevin D; Pennathur, Subramaniam; Tang, Jingjing; Miyaoka, Robert S; Raines, Elaine WCell reports2014 Apr 24356-6524726364
MR microscopy of formalin fixed paraffin embedded histology specimens.Macura, Slobodan; Mishra, Prasanna K; Gamez, Jeffrey D; Pirko, IstvanMagnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine2014 Jun1989-9424715442
MetDisease--connecting metabolites to diseases via literature.Duren, William; Weymouth, Terry; Hull, Tim; Omenn, Gilbert S; Athey, Brian; Burant, Charles; Karnovsky, AllaBioinformatics (Oxford, England)2014 Apr 23NULL24713438
LC-MS-based metabolomics: an update.Fang, Zhong-Ze; Gonzalez, Frank JArchives of toxicology.2014 Aug;1491-50224710571
Role in tumor growth of a glycogen debranching enzyme lost in glycogen storage disease.Guin, Sunny; Pollard, Courtney; Ru, Yuanbin; Ritterson Lew, Carolyn; Duex, Jason E; Dancik, Garrett; Owens, Charles; Spencer, Andrea; Knight, Scott; Holemon, Heather; Gupta, Sounak; Hansel, Donna; Hellerstein, Marc; Lorkiewicz, Pawel; Lane, Andrew N; Fan,Journal of the National Cancer Institute2014 MayNULL24700805
An Omega-3 Epoxide of Docosahexaenoic Acid Lowers Blood Pressure in Angiotensin-II Dependent Hypertension.Ulu, Arzu; Stephen Lee, Kin Sing; Miyabe, Christina; Yang, Jun; Hammock, Bruce G; Dong, Hua; Hammock, Bruce DJournal of cardiovascular pharmacology2014 Mar 31NULL24691274
Platelet lipidomics: modern day perspective on lipid discovery and characterization in platelets.O'Donnell, Valerie B; Murphy, Robert C; Watson, Steve PCirculation research2014 Mar 281185-20324677238
Increased glucose metabolism and glycerolipid formation by fatty acids and GPR40 receptor signaling underlies the fatty acid potentiation of insulin secretion.El-Azzouny, Mahmoud; Evans, Charles R; Treutelaar, Mary K; Kennedy, Robert T; Burant, Charles FThe Journal of biological chemistry2014 May 913575-8824675078
Continuous 24-Hour Leptin, Proopiomelanocortin and Amino Acid Measurements in Human Cerebrospinal Fluid: Correlations with Plasma Leptin, Soluble Leptin Receptor and Amino Acid Levels.Wardlaw, Sharon L; Burant, Charles F; Klein, Samuel; Meece, Kana; White, Anne; Kasten, Tom; Lucey, Brendan P; Bateman, Randall JThe Journal of clinical endocrinology and metabolism2014 Mar 26jc2013408724670082
Increase of EPA-derived hydroxy, epoxy and dihydroxy fatty acid levels in human plasma after a single dose of long-chain omega-3 PUFA.Schuchardt, Jan Philipp; Schneider, Inga; Willenberg, Ina; Yang, Jun; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils HelgeProstaglandins & other lipid mediators2014 Jun23-3124667634
Modular organization of cardiac energy metabolism: energy conversion, transfer and feedback regulation.Guzun, R; Kaambre, T; Bagur, R; Grichine, A; Usson, Y; Varikmaa, M; Anmann, T; Tepp, K; Timohhina, N; Shevchuk, I; Chekulayev, V; Boucher, F; Dos Santos, P; Schlattner, U; Wallimann, T; Kuznetsov, A V; Dzeja, P; Aliev, M; Saks, VActa physiologica (Oxford, England)2014 Mar 26NULL24666671
Leucine modulates dynamic phosphorylation events in insulin signaling pathway and enhances insulin-dependent glycogen synthesis in human skeletal muscle cells.Di Camillo, Barbara; Eduati, Federica; Nair, Sreekumaran K; Avogaro, Angelo; Toffolo, Gianna MBMC cell biology.2014;924646332
Hypotension following patent ductus arteriosus ligation: the role of adrenal hormones.Clyman, Ronald I; Wickremasinghe, Andrea; Merritt, T Allen; Solomon, Tabitha; McNamara, Patrick; Jain, Amish; Singh, Jaideep; Chu, Alison; Noori, Shahab; Sekar, Krishnamurthy; Lavoie, Pascal M; Attridge, Joshua T; Swanson, Jonathan R; Gillam-Krakauer, MarThe Journal of pediatrics2014 Jun1449-55.e124636853
Accumulation of high-value lipids in single-cell microorganisms: a mechanistic approach and future perspectives.Garay, Luis A; Boundy-Mills, Kyria L; German, J BruceJournal of agricultural and food chemistry2014 Apr 22709-2724628496
Towards metabolic biomarkers of insulin resistance and type 2 diabetes: progress from the metabolome.Roberts, Lee D; Koulman, Albert; Griffin, Julian LThe lancet. Diabetes & endocrinology2014 Jan65-7524622670
Tracing phenolic metabolism in Vitis vinifera berries with 13C6-phenylalanine: implication of an unidentified intermediate reservoir.Chassy, Alexander W; Adams, Douglas O; Waterhouse, Andrew LJournal of agricultural and food chemistry2014 Mar 192321-624611798
Alteration of the murine gastrointestinal microbiota by tigecycline leads to increased susceptibility to Clostridium difficile infection.Bassis, Christine M; Theriot, Casey M; Young, Vincent BAntimicrobial agents and chemotherapy2014 May2767-7424590475
Relationship of muscle sympathetic nerve activity to insulin sensitivity.Curry, Timothy B; Hines, Casey N; Barnes, Jill N; Somaraju, Madhuri; Basu, Rita; Miles, John M; Joyner, Michael J; Charkoudian, NishaClinical autonomic research : official journal of the Clinical Autonomic Research Society.2014 Apr;77-8524577625
Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdom interactions of Pseudomonas aeruginosa.Phelan, Vanessa V; Moree, Wilna J; Aguilar, Julieta; Cornett, Dale S; Koumoutsi, Alexandra; Noble, Suzanne M; Pogliano, Kit; Guerrero, Carlos A; Dorrestein, Pieter CJournal of bacteriology2014 May1683-9324532776
A multimodal intervention for patients with secondary progressive multiple sclerosis: feasibility and effect on fatigue.Bisht, Babita; Darling, Warren G; Grossmann, Ruth E; Shivapour, E Torage; Lutgendorf, Susan K; Snetselaar, Linda G; Hall, Michael J; Zimmerman, M Bridget; Wahls, Terry LJournal of alternative and complementary medicine (New York, N.Y.).2014 May;347-5524476345
Administration of saccharin to neonatal mice influences body composition of adult males and reduces body weight of females.Parlee, Sebastian D; Simon, Becky R; Scheller, Erica L; Alejandro, Emilyn U; Learman, Brian S; Krishnan, Venkatesh; Bernal-Mizrachi, Ernesto; MacDougald, Ormond AEndocrinology2014 Apr1313-2624456165
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection.Theriot, Casey M; Koenigsknecht, Mark J; Carlson Jr, Paul E; Hatton, Gabrielle E; Nelson, Adam M; Li, Bo; Huffnagle, Gary B; Z Li, Jun; Young, Vincent BNature communications2014311424445449
Cýýýýýý exposure augments cardiac ischemia/reperfusion injury and coronary artery contraction in Sprague Dawley rats.Thompson, Leslie C; Urankar, Rakhee N; Holland, Nathan A; Vidanapathirana, Achini K; Pitzer, Joshua E; Han, Li; Sumner, Susan J; Lewin, Anita H; Fennell, Timothy R; Lust, Robert M; Brown, Jared M; Wingard, Christopher JToxicological sciences : an official journal of the Society of Toxicology.2014 Apr;365-7824431213
Uremic solutes and risk of end-stage renal disease in type 2 diabetes: metabolomic study.Niewczas, Monika A; Sirich, Tammy L; Mathew, Anna V; Skupien, Jan; Mohney, Robert P; Warram, James H; Smiles, Adam; Huang, Xiaoping; Walker, Walker; Byun, Jaeman; Karoly, Edward D; Kensicki, Elizabeth M; Berry, Gerard T; Bonventre, Joseph V; Pennathur, SuKidney international2014 Jan 15NULL24429397
Improved metabolic health alters host metabolism in parallel with changes in systemic xeno-metabolites of gut origin.Campbell, Caitlin; Grapov, Dmitry; Fiehn, Oliver; Chandler, Carol J; Burnett, Dustin J; Souza, Elaine C; Casazza, Gretchen A; Gustafson, Mary B; Keim, Nancy L; Newman, John W; Hunter, Gary R; Fernandez, Jose R; Garvey, W Timothy; Harper, Mary-Ellen; HoppePloS one2014e8426024416208
Modulation of blood oxylipin levels by long-chain omega-3 fatty acid supplementation in hyper- and normolipidemic men.Schuchardt, Jan Philipp; Schmidt, Simone; Kressel, Gaby; Willenberg, Ina; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils HelgeProstaglandins, leukotrienes, and essential fatty acids2014 Feb-Mar27-3724411718
A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets.Carreer, William J; Flight, Robert M; Moseley, Hunter N BMetabolites2013 Sep 25NULL24404440
Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry.Baker, Erin Shammel; Burnum-Johnson, Kristin E; Jacobs, Jon M; Diamond, Deborah L; Brown, Roslyn N; Ibrahim, Yehia M; Orton, Daniel J; Piehowski, Paul D; Purdy, David E; Moore, Ronald J; Danielson 3rd, William F; Monroe, Matthew E; Crowell, Kevin L; SlyszMolecular & cellular proteomics : MCP2014 Apr1119-2724403597
Establishing 3-nitrotyrosine as a biomarker for the vasculopathy of Fabry disease.Shu, Liming; Vivekanandan-Giri, Anuradha; Pennathur, Subramaniam; Smid, Bouwien E; Aerts, Johannes M F G; Hollak, Carla E M; Shayman, James AKidney international.2014 Jul;58-6624402087
X13CMS: global tracking of isotopic labels in untargeted metabolomics.Huang, Xiaojing; Chen, Ying-Jr; Cho, Kevin; Nikolskiy, Igor; Crawford, Peter A; Patti, Gary JAnalytical chemistry2014 Feb 41632-924397582
Key role of microRNA in the regulation of granulocyte macrophage colony-stimulating factor expression in murine alveolar epithelial cells during oxidative stress.Sturrock, Anne; Mir-Kasimov, Mustafa; Baker, Jessica; Rowley, Jesse; Paine 3rd, RobertThe Journal of biological chemistry2014 Feb 144095-10524371146
Microbial and metabolic interactions between the gastrointestinal tract and Clostridium difficile infection.Theriot, Casey M; Young, Vincent BGut microbes.2014 Jan-Feb;86-9524335555
Soluble epoxide hydrolase deficiency inhibits dextran sulfate sodium-induced colitis and carcinogenesis in mice.Zhang, Wanying; Li, Haonan; Dong, Hua; Liao, Jie; Hammock, Bruce D; Yang, Guang-YuAnticancer research2013 Dec5261-7124324059
Untargeted LC-MS metabolomics of bronchoalveolar lavage fluid differentiates acute respiratory distress syndrome from health.Evans, Charles R; Karnovsky, Alla; Kovach, Melissa A; Standiford, Theodore J; Burant, Charles F; Stringer, Kathleen AJournal of proteome research2014 Feb 7640-924289193
Monitoring metabolic responses to chemotherapy in single cells and tumors using nanostructure-initiator mass spectrometry (NIMS) imaging.O'Brien, Peter J; Lee, Michelle; Spilker, Mary E; Zhang, Cathy C; Yan, Zhengming; Nichols, Timothy C; Li, Wenlin; Johnson, Caroline H; Patti, Gary J; Siuzdak, GaryCancer & metabolism2013424280026
Isotopic Ratio Outlier Analysis Global Metabolomics of Caenorhabditis elegans.Stupp, Gregory S; Clendinen, Chaevien S; Ajredini, Ramadan; Szewc, Mark A; Garrett, Timothy; Menger, Robert F; Yost, Richard A; Beecher, Chris; Edison, Arthur SAnalytical chemistry2013 Dec 1711858-6524274725
Treatment of mice with 2,3,7,8-Tetrachlorodibenzo-p-dioxin markedly increases the levels of a number of cytochrome P450 metabolites of omega-3 polyunsaturated fatty acids in the liver and lung.Yang, Jun; Solaimani, Parrisa; Dong, Hua; Hammock, Bruce; Hankinson, OliverThe Journal of toxicological sciences2013833-624213002
Individual variation in lipidomic profiles of healthy subjects in response to omega-3 Fatty acids.Nording, Malin L; Yang, Jun; Georgi, Katrin; Hegedus Karbowski, Christine; German, J Bruce; Weiss, Robert H; Hogg, Ronald J; Trygg, Johan; Hammock, Bruce D; Zivkovic, Angela MPloS one2013e7657524204640
A Metabolomics Investigation of Non-genotoxic Carcinogenicity in the Rat.Ament, Zsuzsanna; Waterman, Claire L; West, James A; Waterfield, Catherine; Currie, Richard A; Wright, Jayne; Griffin, Julian LJournal of proteome research2013 Dec 65775-9024161236
Dietary long-chain omega-3 fatty acids do not diminish eosinophilic pulmonary inflammation in mice.Schuster, Gertrud U; Bratt, Jennifer M; Jiang, Xiaowen; Pedersen, Theresa L; Grapov, Dmitry; Adkins, Yuriko; Kelley, Darshan S; Newman, John W; Kenyon, Nicholas J; Stephensen, Charles BAmerican journal of respiratory cell and molecular biology2014 Mar626-3624134486
Tilapia (Oreochromis mossambicus) brain cells respond to hyperosmotic challenge by inducing myo-inositol biosynthesis.Gardell, Alison M; Yang, Jun; Sacchi, Romina; Fangue, Nann A; Hammock, Bruce D; Kultz, DietmarThe Journal of experimental biology2013 Dec 154615-2524072790
Artificial sweeteners stimulate adipogenesis and suppress lipolysis independently of sweet taste receptors.Simon, Becky R; Parlee, Sebastian D; Learman, Brian S; Mori, Hiroyuki; Scheller, Erica L; Cawthorn, William P; Ning, Xiaomin; Gallagher, Katherine; Tyrberg, Björn; Assadi-Porter, Fariba M; Evans, Charles R; MacDougald, Ormond AThe Journal of biological chemistry.2013 Nov 8;24068707
Anti-inflammatory properties of prostaglandin E2: deletion of microsomal prostaglandin E synthase-1 exacerbates non-immune inflammatory arthritis in mice.Frolov, Andrey; Yang, Lihua; Dong, Hua; Hammock, Bruce D; Crofford, Leslie JProstaglandins, leukotrienes, and essential fatty acids2013 Oct351-824055573
Mitochondrial protein acetylation as a cell-intrinsic, evolutionary driver of fat storage: chemical and metabolic logic of acetyl-lysine modifications.Ghanta, Sirisha; Grossmann, Ruth E; Brenner, CharlesCritical reviews in biochemistry and molecular biology2013 Nov-Dec561-7424050258
Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus.Smilowitz, Jennifer T; Totten, Sarah M; Huang, Jincui; Grapov, Dmitry; Durham, Holiday A; Lammi-Keefe, Carol J; Lebrilla, Carlito; German, J BruceThe Journal of nutrition2013 Dec1906-1224047700
LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets.Crowell, Kevin L; Slysz, Gordon W; Baker, Erin S; LaMarche, Brian L; Monroe, Matthew E; Ibrahim, Yehia M; Payne, Samuel H; Anderson, Gordon A; Smith, Richard DBioinformatics (Oxford, England)2013 Nov 12804-524008421
Long-Chain Acyl Coenzyme A Synthetase 1 Overexpression in Primary Cultured Schwann Cells Prevents Long Chain Fatty Acid-Induced Oxidative Stress and Mitochondrial Dysfunction.Hinder, Lucy M; Figueroa-Romero, Claudia; Pacut, Crystal; Hong, Yu; Vivekanandan-Giri, Anuradha; Pennathur, Subramaniam; Feldman, Eva LAntioxidants & redox signaling2013 Oct 5NULL23991914
Preparation of 20-HETE using multifunctional enzyme type 2-negative Starmerella bombicola.Van Bogaert, Inge; Zhang, Guodong; Yang, Jun; Liu, Jun-Yan; Ye, Yonghao; Soetaert, Wim; Hammock, Bruce DJournal of lipid research2013 Nov3215-923966667
Metabolite profile analysis reveals functional effects of 28-day vitamin B-6 restriction on one-carbon metabolism and tryptophan catabolic pathways in healthy men and women.da Silva, Vanessa R; Rios-Avila, Luisa; Lamers, Yvonne; Ralat, Maria A; Midttun, Øivind; Quinlivan, Eoin P; Garrett, Timothy J; Coats, Bonnie; Shankar, Meena N; Percival, Susan S; Chi, Yueh-Yun; Muller, Keith E; Ueland, Per Magne; Stacpoole, Peter W; Gregory 3rd, Jesse FThe Journal of nutrition.2013 Nov;23966327
Mechanism of formation of the major estradiol product ions following collisional activation of the molecular anion in a tandem quadrupole mass spectrometer.Wooding, Kerry M; Barkley, Robert M; Hankin, Joseph A; Johnson, Christopher A; Bradford, Andrew P; Santoro, Nanette; Murphy, Robert CJournal of the American Society for Mass Spectrometry2013 Oct1451-523955001
Pharmacometabolomic signature of ataxia SCA1 mouse model and lithium effects.Perroud, Bertrand; Jafar-Nejad, Paymaan; Wikoff, William R; Gatchel, Jennifer R; Wang, Lu; Barupal, Dinesh K; Crespo-Barreto, Juan; Fiehn, Oliver; Zoghbi, Huda Y; Kaddurah-Daouk, RimaPloS one2013e7061023936457
Cortisol response to operative stress with anesthesia in healthy children.Taylor, Lisa K; Auchus, Richard J; Baskin, Laurence S; Miller, Walter LThe Journal of clinical endocrinology and metabolism2013 Sep3687-9323861461
Profiling targets of the irreversible palmitoylation inhibitor 2-bromopalmitate.Davda, Dahvid; El Azzouny, Mahmoud A; Tom, Christopher T M B; Hernandez, Jeannie L; Majmudar, Jaimeen D; Kennedy, Robert T; Martin, Brent RACS chemical biology2013 Sep 201912-723844586
An untargeted metabolomic workflow to improve structural characterization of metabolites.Nikolskiy, Igor; Mahieu, Nathaniel G; Chen, Ying-Jr; Tautenhahn, Ralf; Patti, Gary JAnalytical chemistry2013 Aug 207713-923829391
Nutritional lipidomics: molecular metabolism, analytics, and diagnostics.Smilowitz, Jennifer T; Zivkovic, Angela M; Wan, Yu-Jui Yvonne; Watkins, Steve M; Nording, Malin L; Hammock, Bruce D; German, J BruceMolecular nutrition & food research2013 Aug1319-3523818328
LipidBlast in silico tandem mass spectrometry database for lipid identification.Kind, Tobias; Liu, Kwang-Hyeon; Lee, Do Yup; Defelice, Brian; Meissen, John K; Fiehn, OliverNature methods2013 Aug755-823817071
Niemann-pick type C2 deficiency in human fibroblasts confers robust and selective activation of prostaglandin E2 biosynthesis.Frolov, Andrey; Dong, Hua; Jiang, Min; Yang, Lihua; Cook, Erik C; Matnani, Rahul; Hammock, Bruce D; Crofford, Leslie JThe Journal of biological chemistry2013 Aug 1623696-70323814065
Integrated phosphoproteomic and metabolomic profiling reveals NPM-ALK-mediated phosphorylation of PKM2 and metabolic reprogramming in anaplastic large cell lymphoma.McDonnell, Scott R P; Hwang, Steven R; Rolland, Delphine; Murga-Zamalloa, Carlos; Basrur, Venkatesha; Conlon, Kevin P; Fermin, Damian; Wolfe, Thomas; Raskind, Alexander; Ruan, Chunhai; Jiang, Jian-Kang; Thomas, Craig J; Hogaboam, Cory M; Burant, Charles FBlood2013 Jun 27NULL23814019
Coordinate expression of transcripts and proteins in platelets.Rowley, Jesse W; Weyrich, Andrew SBlood2013 Jun 275255-623813941
MS/MS networking guided analysis of molecule and gene cluster families.Nguyen, Don Duy; Wu, Cheng-Hsuan; Moree, Wilna J; Lamsa, Anne; Medema, Marnix H; Zhao, Xiling; Gavilan, Ronnie G; Aparicio, Marystella; Atencio, Librada; Jackson, Chanaye; Ballesteros, Javier; Sanchez, Joel; Watrous, Jeramie D; Phelan, Vanessa V; van de WProceedings of the National Academy of Sciences of the United States of America2013 Jul 9E2611-2023798442
Toward 'omic scale metabolite profiling: a dual separation-mass spectrometry approach for coverage of lipid and central carbon metabolism.Ivanisevic, Julijana; Zhu, Zheng-Jiang; Plate, Lars; Tautenhahn, Ralf; Chen, Stephen; O'Brien, Peter J; Johnson, Caroline H; Marletta, Michael A; Patti, Gary J; Siuzdak, GaryAnalytical chemistry2013 Jul 166876-8423781873
HR-MAS NMR Tissue Metabolomic Signatures Cross-validated by Mass Spectrometry Distinguish Bladder Cancer from Benign Disease.Tripathi, Pratima; Somashekar, Bagganahalli S; Ponnusamy, M; Gursky, Amy; Dailey, Stephen; Kunju, Priya; Lee, Cheryl T; Chinnaiyan, Arul M; Rajendiran, Thekkelnaycke M; Ramamoorthy, AyyalusamyJournal of proteome research2013 Jul 53519-2823731241
Comparison of free serum oxylipin concentrations in hyper- vs. normolipidemic men.Schuchardt, Jan Philipp; Schmidt, Simone; Kressel, Gaby; Dong, Hua; Willenberg, Ina; Hammock, Bruce D; Hahn, Andreas; Schebb, Nils HelgeProstaglandins, leukotrienes, and essential fatty acids2013 Jul19-2923694766
Anti-inflammatory Effects of Omega-3 Polyunsaturated Fatty Acids and Soluble Epoxide Hydrolase Inhibitors in Angiotensin-II Dependent Hypertension.Ulu, Arzu; Harris, Todd R; Morisseau, Christophe; Miyabe, Christina; Inoue, Hiromi; Schuster, Gertrud; Dong, Hua; Iosif, Ana-Maria; Liu, Jun-Yan; Weiss, Robert H; Chiamvimonvat, Nipavan; Imig, John D; Hammock, Bruce DJournal of cardiovascular pharmacology2013 May 14NULL23676336
Error Analysis and Propagation in Metabolomics Data Analysis.Moseley, Hunter N BComputational and structural biotechnology journal2013 Jan 123667718
Optimization of harvesting, extraction, and analytical protocols for UPLC-ESI-MS-based metabolomic analysis of adherent mammalian cancer cells.Bi, Huichang; Krausz, Kristopher W; Manna, Soumen K; Li, Fei; Johnson, Caroline H; Gonzalez, Frank JAnalytical and bioanalytical chemistry2013 Jun5279-8923604415
Mini-review: Lactoferrin: a bioinspired, anti-biofilm therapeutic.Ammons, M C; Copie, VBiofouling2013443-5523574002
Loss of FBP1 by Snail-mediated repression provides metabolic advantages in basal-like breast cancer.Dong, Chenfang; Yuan, Tingting; Wu, Yadi; Wang, Yifan; Fan, Teresa W M; Miriyala, Sumitra; Lin, Yiwei; Yao, Jun; Shi, Jian; Kang, Tiebang; Lorkiewicz, Pawel; St Clair, Daret; Hung, Mien-Chie; Evers, B Mark; Zhou, Binhua PCancer cell2013 Mar 18316-3123453623
Metabolome response to glucose in the ýý-cell line INS-1 832/13.Lorenz, Matthew A; El Azzouny, Mahmoud A; Kennedy, Robert T; Burant, Charles FThe Journal of biological chemistry2013 Apr 1210923-3523426361
The isotridecanyl side chain of plusbacin-A3 is essential for the transglycosylase inhibition of peptidoglycan biosynthesis.Kim, Sung Joon; Singh, Manmilan; Wohlrab, Aaron; Yu, Tsyr-Yan; Patti, Gary J; O'Connor, Robert D; VanNieuwenhze, Michael; Schaefer, JacobBiochemistry2013 Mar 1923421534
The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors.Dougherty, Joseph D; Maloney, Susan E; Wozniak, David F; Rieger, Michael A; Sonnenblick, Lisa; Coppola, Giovanni; Mahieu, Nathaniel G; Zhang, Juliet; Cai, Jinlu; Patti, Gary J; Abrahams, Brett S; Geschwind, Daniel H; Heintz, NathanielThe Journal of neuroscience : the official journal of the Society for Neuroscience.2013 Feb 13;2732-5323407934
ZBP-89 regulates expression of tryptophan hydroxylase I and mucosal defense against Salmonella typhimurium in mice.Essien, Bryan E; Grasberger, Helmut; Romain, Rachael D; Law, David J; Veniaminova, Natalia A; Saqui-Salces, Milena; El-Zaatari, Mohamad; Tessier, Arthur; Hayes, Michael M; Yang, Alexander C; Merchant, Juanita LGastroenterology2013 Jun1466-77, 1477.e1-923395646
Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database.Zhu, Zheng-Jiang; Schultz, Andrew W; Wang, Junhua; Johnson, Caroline H; Yannone, Steven M; Patti, Gary J; Siuzdak, GaryNature protocols2013 Mar451-6023391889
Perinatal bisphenol A exposure promotes hyperactivity, lean body composition, and hormonal responses across the murine life course.Anderson, Olivia S; Peterson, Karen E; Sanchez, Brisa N; Zhang, Zhenzhen; Mancuso, Peter; Dolinoy, Dana CFASEB journal : official publication of the Federation of American Societies for Experimental Biology2013 Apr1784-9223345456
Mass spectrometry theory and application to adrenal diseases.Wooding, Kerry M; Auchus, Richard JMolecular and cellular endocrinology2013 May 22201-723333773
High density lipoprotein is targeted for oxidation by myeloperoxidase in rheumatoid arthritis.Vivekanandan-Giri, Anuradha; Slocum, Jessica L; Byun, Jaeman; Tang, Chongren; Sands, Robin L; Gillespie, Brenda W; Heinecke, Jay W; Saran, Rajiv; Kaplan, Mariana J; Pennathur, SubramaniamAnnals of the rheumatic diseases2013 Jan 12NULL23313808
Stable isotope- and mass spectrometry-based metabolomics as tools in drug metabolism: a study expanding tempol pharmacology.Li, Fei; Pang, Xiaoyan; Krausz, Kristopher W; Jiang, Changtao; Chen, Chi; Cook, John A; Krishna, Murali C; Mitchell, James B; Gonzalez, Frank J; Patterson, Andrew DJournal of proteome research2013 Mar 11369-7623301521
Network motifs provide signatures that characterize metabolism.Shellman, Erin R; Burant, Charles F; Schnell, SantiagoMolecular bioSystems2013 Mar352-6023287894
Microbial metabolic exchange in 3D.Watrous, Jeramie D; Phelan, Vanessa V; Hsu, Cheng-Chih; Moree, Wilna J; Duggan, Brendan M; Alexandrov, Theodore; Dorrestein, Pieter CThe ISME journal2013 Apr770-8023283018
A view from above: cloud plots to visualize global metabolomic data.Patti, Gary J; Tautenhahn, Ralf; Rinehart, Duane; Cho, Kevin; Shriver, Leah P; Manchester, Marianne; Nikolskiy, Igor; Johnson, Caroline H; Mahieu, Nathaniel G; Siuzdak, GaryAnalytical chemistry.2013 Jan 15;798-80423206250
Metabolomics: an essential tool to understand the function of peroxisome proliferator-activated receptor alpha.Montanez, Jessica E; Peters, Jeffrey M; Correll, Jared B; Gonzalez, Frank J; Patterson, Andrew DToxicologic pathology2013 Feb410-823197196
A Carbonyl Capture Approach for Profiling Oxidized Metabolites in Cell Extracts.Mattingly, Stephanie J; Xu, Tao; Nantz, Michael H; Higashi, Richard M; Fan, Teresa W-MMetabolomics : Official journal of the Metabolomic Society.2012;989-99623175637
Pulmonary instillation of multi-walled carbon nanotubes promotes coronary vasoconstriction and exacerbates injury in isolated hearts.Thompson, Leslie C; Frasier, Chad R; Sloan, Ruben C; Mann, Erin E; Harrison, Benjamin S; Brown, Jared M; Brown, David A; Wingard, Christopher JNanotoxicology.2014 Feb;38-4923102262
Decreased glycolytic and tricarboxylic acid cycle intermediates coincide with peripheral nervous system oxidative stress in a murine model of type 2 diabetes.Hinder, Lucy M; Vivekanandan-Giri, Anuradha; McLean, Lisa L; Pennathur, Subramaniam; Feldman, Eva LThe Journal of endocrinology2013 Jan4165023086140
Addressing the current bottlenecks of metabolomics: Isotopic Ratio Outlier Analysisýýý, an isotopic-labeling technique for accurate biochemical Jong, Felice A; Beecher, ChrisBioanalysis.2012 Sep;2303-1423046270
An accelerated workflow for untargeted metabolomics using the METLIN database.Tautenhahn, Ralf; Cho, Kevin; Uritboonthai, Winnie; Zhu, Zhengjiang; Patti, Gary J; Siuzdak, GaryNature biotechnology.2012 Sep;826-822965049
Mammalian target of rapamycin regulates neutrophil extracellular trap formation via induction of hypoxia-inducible factor 1 ýý.McInturff, Alison M; Cody, Mark J; Elliott, Elizabeth A; Glenn, Jared W; Rowley, Jesse W; Rondina, Matthew T; Yost, Christian CBlood2012 Oct 113118-2522919032
Association of plasma ýý-3 and ýý-6 lipids with burden of disease measures in bipolar subjects.Evans, Simon J; Kamali, Masoud; Prossin, Alan R; Harrington, Gloria J; Ellingrod, Vicki L; McInnis, Melvin G; Burant, Charles FJournal of psychiatric research.2012 Nov;1435-4122884424
Platelet mRNA: the meaning behind the message.Rowley, Jesse W; Schwertz, Hansjorg; Weyrich, Andrew SCurrent opinion in hematology2012 Sep385-9122814651
A short-term diet and exercise intervention ameliorates inflammation and markers of metabolic health in overweight/obese children.Izadpanah, Ali; Barnard, R James; Almeda, Anna Jane E; Baldwin, Gayle C; Bridges, Sydney A; Shellman, Erin R; Burant, Charles F; Roberts, Christian KAmerican journal of physiology. Endocrinology and metabolism.2012 Aug 15;E542-5022713506
XCMS Online: a web-based platform to process untargeted metabolomic data.Tautenhahn, Ralf; Patti, Gary J; Rinehart, Duane; Siuzdak, GaryAnalytical chemistry.2012 Jun 5;5035-922533540