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The search results on this publication page are automated on a monthly schedule based on acknowledgment of NIH Common Fund award numbers and intramural awards. Therefore, this list is not an exhaustive or error-free account of the program’s publications.
Bioinformatics and Computational Biology (2560)
| Publication Title | Authors | Journal | Publication Date | Page No | PubMedID |
|---|---|---|---|---|---|
| Trajectories from Distribution-valued Functional Curves: A Unified Wasserstein Framework★. | Sharma, Anuja; Gerig, Guido | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2020 Oct | 36108328 | |
| The GA4GH Phenopacket schema defines a computable representation of clinical data. | Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; Callahan, Tiffany J; Chute, Christopher G; Courtot, Mélanie; Danis, Daniel; Elemento, Olivier; Essenwanger, Andrea; Freimuth, Robert R; Gargano, Michael A; Groza, Tudor; Hamosh, Ada; Harris, Nomi L; Kaliyaperumal, Rajaram; Lloyd, Kevin C Kent; Khalifa, Aly; Krawitz, Peter M; Köhler, Sebastian; Laraway, Brian J; Lehväslaiho, Heikki; Matalonga, Leslie; McMurry, Julie A; Metke-Jimenez, Alejandro; Mungall, Christopher J; Munoz-Torres, Monica C; Ogishima, Soichi; Papakonstantinou, Anastasios; Piscia, Davide; Pontikos, Nikolas; Queralt-Rosinach, Núria; Roos, Marco; Sass, Julian; Schofield, Paul N; Seelow, Dominik; Siapos, Anastasios; Smedley, Damian; Smith, Lindsay D; Steinhaus, Robin; Sundaramurthi, Jagadish Chandrabose; Swietlik, Emilia M; Thun, Sylvia; Vasilevsky, Nicole A; Wagner, Alex H; Warner, Jeremy L; Weiland, Claus; GAGH Phenopacket Modeling Consortium; Haendel, Melissa A; Robinson, Peter N | Nature biotechnology | 2022 Jun | 35705716 | |
| An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease. | Ghosh, Pradipta; Katkar, Gajanan D; Shimizu, Chisato; Kim, Jihoon; Khandelwal, Soni; Tremoulet, Adriana H; Kanegaye, John T; Pediatric Emergency Medicine Kawasaki Disease Research Group | Nature communications | 2022 05 16 | 35577777 | |
| Mutational and functional genetics mapping of chemotherapy resistance mechanisms in relapsed acute lymphoblastic leukemia. | Oshima, Koichi; Zhao, Junfei; Pérez-Durán, Pablo; Brown, Jessie A; Patiño-Galindo, Juan Angel; Chu, Timothy; Quinn, Aidan; Gunning, Thomas; Belver, Laura; Ambesi-Impiombato, Alberto; Tosello, Valeria; Wang, Zhengqiang; Sulis, Maria Luisa; Kato, Motohiro; Koh, Katsuyoshi; Paganin, Maddalena; Basso, Giuseppe; Balbin, Milagros; Nicolas, Concepcion; Gastier-Foster, Julie M; Devidas, Meenakshi; Loh, Mignon L; Paietta, Elisabeth; Tallman, Martin S; Rowe, Jacob M; Litzow, Mark; Minden, Mark D; Meijerink, Jules; Rabadan, Raul; Ferrando, Adolfo | Nature cancer | 2020 Nov | 33796864 | |
| Novel ultra-rare exonic variants identified in a founder population implicate cadherins in schizophrenia. | Lencz, Todd; Yu, Jin; Khan, Raiyan Rashid; Flaherty, Erin; Carmi, Shai; Lam, Max; Ben-Avraham, Danny; Barzilai, Nir; Bressman, Susan; Darvasi, Ariel; Cho, Judy H; Clark, Lorraine N; Gümüş, Zeynep H; Vijai, Joseph; Klein, Robert J; Lipkin, Steven; Offit, Kenneth; Ostrer, Harry; Ozelius, Laurie J; Peter, Inga; Malhotra, Anil K; Maniatis, Tom; Atzmon, Gil; Pe'er, Itsik | Neuron | 2021 05 05 | 33756103 | |
| General anaesthesia during infancy reduces white matter micro-organisation in developing rhesus monkeys. | Young, Jeffrey T; Vlasova, Roza M; Howell, Brittany R; Knickmeyer, Rebecca C; Morin, Elyse; Kuitchoua, Kaela I; Lubach, Gabriele R; Noel, Jean; Hu, Xiaoping; Shi, Yundi; Caudill, Gibson; Alexander, Andrew L; Niethammer, Marc; Paule, Merle G; Coe, Christopher L; Sanchez, Mar; Styner, Martin | British journal of anaesthesia | 2021 04 | 33549320 | |
| An empirical meta-analysis of the life sciences linked open data on the web. | Kamdar, Maulik R; Musen, Mark A | Scientific data | 2021 01 21 | 33479214 | |
| Comprehensive characterization of hepatocyte-derived extracellular vesicles identifies direct miRNA-based regulation of hepatic stellate cells and DAMP-based hepatic macrophage IL-1β and IL-17 upregulation in alcoholic hepatitis mice. | Eguchi, Akiko; Yan, Rui; Pan, Stephanie Q; Wu, Raymond; Kim, Jihoon; Chen, Yibu; Ansong, Charles; Smith, Richard D; Tempaku, Mina; Ohno-Machado, Lucila; Takei, Yoshiyuki; Feldstein, Ariel E; Tsukamoto, Hidekazu | Journal of molecular medicine (Berlin, Germany) | 2020 07 | 32556367 | |
| Big Data Privacy in Biomedical Research. | Wang, Shuang; Bonomi, Luca; Dai, Wenrui; Chen, Feng; Cheung, Cynthia; Bloss, Cinnamon S; Cheng, Samuel; Jiang, Xiaoqian | IEEE transactions on big data. | 2020 Jun; | 32478127 | |
| Unleashing the value of Common Data Elements through the CEDAR Workbench. | O'Connor, Martin J; Warzel, Denise B; Martínez-Romero, Marcos; Hardi, Josef; Willrett, Debra; Egyedi, Attila L; Eftekhari, Aras; Graybeal, John; Musen, Mark A | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2019; | 32308863 | |
| Active Surveillance of the Implantable Cardioverter-Defibrillator Registry for Defibrillator Lead Failures. | Resnic, Frederic S; Majithia, Arjun; Dhruva, Sanket S; Ssemaganda, Henry; Robbins, Susan; Marinac-Dabic, Danica; Hewitt, Kathleen; Ohno-Machado, Lucila; Reynolds, Matthew R; Matheny, Michael E | Circulation. Cardiovascular quality and outcomes. | 2020 Apr; | 32283971 | |
| Sex differences associated with corpus callosum development in human infants: A longitudinal multimodal imaging study. | Schmied, Astrid; Soda, Takahiro; Gerig, Guido; Styner, Martin; Swanson, Meghan R; Elison, Jed T; Shen, Mark D; McKinstry, Robert C; Pruett Jr, John R; Botteron, Kelly N; Estes, Annette M; Dager, Stephen R; Hazlett, Heather C; Schultz, Robert T; Piven, Joseph; Wolff, Jason J; IBIS Network | NeuroImage. | 2020 Jul 15; | 32276067 | |
| SlicerDMRI: Diffusion MRI and Tractography Research Software for Brain Cancer Surgery Planning and Visualization. | Zhang, Fan; Noh, Thomas; Juvekar, Parikshit; Frisken, Sarah F; Rigolo, Laura; Norton, Isaiah; Kapur, Tina; Pujol, Sonia; Wells 3rd, William; Yarmarkovich, Alex; Kindlmann, Gordon; Wassermann, Demian; San Jose Estepar, Raul; Rathi, Yogesh; Kikinis, Ron; Johnson, Hans J; Westin, Carl-Fredrik; Pieper, Steve; Golby, Alexandra J; O'Donnell, Lauren J | JCO clinical cancer informatics. | 2020 Mar; | 32216636 | |
| A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies. | Degasperi, Andrea; Amarante, Tauanne Dias; Czarnecki, Jan; Shooter, Scott; Zou, Xueqing; Glodzik, Dominik; Morganella, Sandro; Nanda, Arjun S; Badja, Cherif; Koh, Gene; Momen, Sophie E; Georgakopoulos-Soares, Ilias; Dias, João M L; Young, Jamie; Memari, Yasin; Davies, Helen; Nik-Zainal, Serena | Nature cancer | 2020 Feb | 32118208 | |
| Social subordination alters estradiol-induced changes in cortico-limbic brain volumes in adult female rhesus monkeys. | Reding, Katherine M; Styner, Martin M; Wilson, Mark E; Toufexis, Donna; Sanchez, Mar M | Psychoneuroendocrinology. | 2020 04; | 32023501 | |
| High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP). | Zhang, Yichi; Cai, Tianrun; Yu, Sheng; Cho, Kelly; Hong, Chuan; Sun, Jiehuan; Huang, Jie; Ho, Yuk-Lam; Ananthakrishnan, Ashwin N; Xia, Zongqi; Shaw, Stanley Y; Gainer, Vivian; Castro, Victor; Link, Nicholas; Honerlaw, Jacqueline; Huang, Sicong; Gagnon, David; Karlson, Elizabeth W; Plenge, Robert M; Szolovits, Peter; Savova, Guergana; Churchill, Susanne; O'Donnell, Christopher; Murphy, Shawn N; Gaziano, J Michael; Kohane, Isaac; Cai, Tianxi; Liao, Katherine P | Nature protocols. | 2019 Dec; | 31748751 | |
| Enabling Web-scale data integration in biomedicine through Linked Open Data. | Kamdar, Maulik R; Fernández, Javier D; Polleres, Axel; Tudorache, Tania; Musen, Mark A | NPJ digital medicine. | 2019; | 31531395 | |
| Building a tobacco user registry by extracting multiple smoking behaviors from clinical notes. | Palmer, Ellen L; Hassanpour, Saeed; Higgins, John; Doherty, Jennifer A; Onega, Tracy | BMC medical informatics and decision making. | 2019 Jul 25; | 31340796 | |
| Machine Learning-Based Predictive Modeling of Surgical Intervention in Glaucoma Using Systemic Data From Electronic Health Records. | Baxter, Sally L; Marks, Charles; Kuo, Tsung-Ting; Ohno-Machado, Lucila; Weinreb, Robert N | American journal of ophthalmology. | 2019 Dec; | 31323204 | |
| Precursor-induced conditional random fields: connecting separate entities by induction for improved clinical named entity recognition. | Lee, Wangjin; Choi, Jinwook | BMC medical informatics and decision making. | 2019 07 15; | 31307440 | |
| Early language exposure supports later language skills in infants with and without autism. | Swanson, Meghan R; Donovan, Kevin; Paterson, Sarah; Wolff, Jason J; Parish-Morris, Julia; Meera, Shoba S; Watson, Linda R; Estes, Annette M; Marrus, Natasha; Elison, Jed T; Shen, Mark D; McNeilly, Heidi B; MacIntyre, Leigh; Zwaigenbaum, Lonnie; St John, Tanya; Botteron, Kelly; Dager, Stephen; Piven, Joseph; IBIS Network | Autism research : official journal of the International Society for Autism Research. | 2019 Dec; | 31254329 | |
| Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. | Martínez-Romero, Marcos; O'Connor, Martin J; Egyedi, Attila L; Willrett, Debra; Hardi, Josef; Graybeal, John; Musen, Mark A | Database : the journal of biological databases and curation. | 2019 01 01; | 31210270 | |
| Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis. | Neri, Tui; Hiriart, Emilye; van Vliet, Patrick P; Faure, Emilie; Norris, Russell A; Farhat, Batoul; Jagla, Bernd; Lefrancois, Julie; Sugi, Yukiko; Moore-Morris, Thomas; Zaffran, Stéphane; Faustino, Randolph S; Zambon, Alexander C; Desvignes, Jean-Pierre; | Nature communications. | 2019 04 26; | 31028265 | |
| Developing a portable natural language processing based phenotyping system. | Sharma, Himanshu; Mao, Chengsheng; Zhang, Yizhen; Vatani, Haleh; Yao, Liang; Zhong, Yizhen; Rasmussen, Luke; Jiang, Guoqian; Pathak, Jyotishman; Luo, Yuan | BMC medical informatics and decision making. | 2019 Apr 04; | 30943974 | |
| Clinical text classification with rule-based features and knowledge-guided convolutional neural networks. | Yao, Liang; Mao, Chengsheng; Luo, Yuan | BMC medical informatics and decision making. | 2019 Apr 04; | 30943960 | |
| Activation of hedgehog signaling associates with early disease progression in chronic lymphocytic leukemia. | Ghia, Emanuela M; Rassenti, Laura Z; Neuberg, Donna S; Blanco, Alejandro; Yousif, Fouad; Smith, Erin N; McPherson, John D; Hudson, Thomas J; HALT Pan-Leukemia Gene Panel Consortium; Harismendy, Olivier; Frazer, Kelly A; Kipps, Thomas J | Blood. | 2019 Jun 20; | 30923040 | |
| ACTIVE LEARNING GUIDED INTERACTIONS FOR CONSISTENT IMAGE SEGMENTATION WITH REDUCED USER INTERACTIONS. | Veeraraghavan, Harini; Miller, James V | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2011 Mar-Apr; | 30881602 | |
| Distributed learning from multiple EHR databases: Contextual embedding models for medical events. | Li, Ziyi; Roberts, Kirk; Jiang, Xiaoqian; Long, Qi | Journal of biomedical informatics. | 2019 Apr; | 30825539 | |
| A Preliminary Study of Clinical Concept Detection Using Syntactic Relations. | Torii, Manabu; Yang, Elly W; Doan, Son | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2018; | 30815146 | |
| Ensemble-based Methods to Improve De-identification of Electronic Health Record Narratives. | Kim, Youngjun; Heider, Paul; Meystre, Stéphane | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2018; | 30815108 | |
| Negative Regulation of Cytosolic Sensing of DNA. | Abe, Takayuki; Shapira, Sagi D | International review of cell and molecular biology. | 2019; | 30798991 | |
| The variable quality of metadata about biological samples used in biomedical experiments. | Gonçalves, Rafael S; Musen, Mark A | Scientific data. | 2019 Feb 19; | 30778255 | |
| Impact of aeration change and beam arrangement on the robustness of proton plans. | Shusharina, Nadya; Fullerton, Barbara; Adams, Judy A; Sharp, Gregory C; Chan, Annie W | Journal of applied clinical medical physics. | 2019 Mar; | 30756466 | |
| Unsupervised concept extraction from clinical text through semantic composition. | Tulkens, Stéphan; ?uster, Simon; Daelemans, Walter | Journal of biomedical informatics. | 2019 03; | 30753949 | |
| Classifying relations in clinical narratives using segment graph convolutional and recurrent neural networks (Seg-GCRNs). | Li, Yifu; Jin, Ran; Luo, Yuan | Journal of the American Medical Informatics Association : JAMIA. | 2019 Mar 01; | 30590613 | |
| Qualitative analysis of manual annotations of clinical text with SNOMED CT. | Miñarro-Giménez, Jose Antonio; Martínez-Costa, Catalina; Karlsson, Daniel; Schulz, Stefan; Gøeg, Kirstine Rosenbeck | PloS one. | 2018; | 30589855 | |
| Group-wise Shape Correspondence of Variable and Complex Objects. | Lyu, Ilwoo; Perdomo, Jonathan; Yapuncich, Gabriel S; Paniagua, Beatriz; Boyer, Doug M; Styner, Martin A | Proceedings of SPIE--the International Society for Optical Engineering. | 2018 Mar; | 30381780 | |
| Quantitative tract-based white matter heritability in 1- and 2-year-old twins. | Lee, Seung Jae; Zhang, Jingwen; Neale, Michael C; Styner, Martin; Zhu, Hongtu; Gilmore, John H | Human brain mapping. | 2019 03; | 30368980 | |
| Secure large-scale genome data storage and query. | Chen, Luyao; Aziz, Md Momin; Mohammed, Noman; Jiang, Xiaoqian | Computer methods and programs in biomedicine. | 2018 Oct; | 30337067 | |
| OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. | Seth, Ajay; Hicks, Jennifer L; Uchida, Thomas K; Habib, Ayman; Dembia, Christopher L; Dunne, James J; Ong, Carmichael F; DeMers, Matthew S; Rajagopal, Apoorva; Millard, Matthew; Hamner, Samuel R; Arnold, Edith M; Yong, Jennifer R; Lakshmikanth, Shrinidhi | PLoS computational biology. | 2018 07; | 30048444 | |
| Keypoint Transfer for Fast Whole-Body Segmentation. | Wachinger, Christian; Toews, Matthew; Langs, Georg; Wells, William; Golland, Polina | IEEE transactions on medical imaging. | 2018 Jun 27; | 29994670 | |
| 4D CONTINUOUS MEDIAL REPRESENTATION BY GEODESIC SHAPE REGRESSION. | Hong, Sungmin; Fishbaugh, James; Gerig, Guido | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2018 Apr; | 29973975 | |
| Duodenal-Jejunal Flexure GI Stromal Tumor Frequently Heralds Somatic NF1 and Notch Pathway Mutations. | Burgoyne, Adam M; De Siena, Martina; Alkhuziem, Maha; Tang, Chih-Min; Medina, Benjamin; Fanta, Paul T; Belinsky, Martin G; von Mehren, Margaret; Thorson, John A; Madlensky, Lisa; Bowler, Timothy; D'Angelo, Francesco; Stupack, Dwayne G; Harismendy, Olivier | JCO precision oncology. | 2017; | 29938249 | |
| Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. | Chen, Feng; Jiang, Xiaoqian; Wang, Shuang; Schilling, Lisa M; Meeker, Daniella; Ong, Toan; Matheny, Michael E; Doctor, Jason N; Ohno-Machado, Lucila; Vaidya, Jaideep | IEEE internet computing. | 2018 Mar-Apr; | 29867290 | |
| Association between inflammation and systolic blood pressure in RA compared to patients without RA. | Yu, Zhi; Kim, Seoyoung C; Vanni, Kathleen; Huang, Jie; Desai, Rishi; Murphy, Shawn N; Solomon, Daniel H; Liao, Katherine P | Arthritis research & therapy. | 2018 Jun 01; | 29855349 | |
| A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. | Vaidya, Jaideep; Shafiq, Basit; Asani, Muazzam; Adam, Nabil; Jiang, Xiaoqian; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854240 | |
| Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. | Martínez-Romero, Marcos; O'Connor, Martin J; Shankar, Ravi D; Panahiazar, Maryam; Willrett, Debra; Egyedi, Attila L; Gevaert, Olivier; Graybeal, John; Musen, Mark A | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854196 | |
| Exploiting Unlabeled Texts with Clustering-based Instance Selection for Medical Relation Classification. | Kim, Youngjun; Riloff, Ellen; Meystre, Stéphane M | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854174 | |
| Mechanism-based Pharmacovigilance over the Life Sciences Linked Open Data Cloud. | Kamdar, Maulik R; Musen, Mark A | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2017; | 29854169 | |
| PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. | Sinnott, Jennifer A; Cai, Fiona; Yu, Sheng; Hejblum, Boris P; Hong, Chuan; Kohane, Isaac S; Liao, Katherine P | Journal of the American Medical Informatics Association : JAMIA. | 2018 10 01; | 29788308 | |
| Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. | Agniel, Denis; Kohane, Isaac S; Weber, Griffin M | BMJ (Clinical research ed.). | 2018 04 30; | 29712648 | |
| High-depth whole genome sequencing of an Ashkenazi Jewish reference panel: enhancing sensitivity, accuracy, and imputation. | Lencz, Todd; Yu, Jin; Palmer, Cameron; Carmi, Shai; Ben-Avraham, Danny; Barzilai, Nir; Bressman, Susan; Darvasi, Ariel; Cho, Judy H; Clark, Lorraine N; Gümü?, Zeynep H; Joseph, Vijai; Klein, Robert; Lipkin, Steven; Offit, Kenneth; Ostrer, Harry; Ozelius, | Human genetics. | 2018 Apr; | 29705978 | |
| Analyzing user interactions with biomedical ontologies: A visual perspective. | Kamdar, Maulik R; Walk, Simon; Tudorache, Tania; Musen, Mark A | Web semantics (Online). | 2018 Mar; | 29657560 | |
| Privacy-Preserving Patient Similarity Learning in a Federated Environment: Development and Analysis. | Lee, Junghye; Sun, Jimeng; Wang, Fei; Wang, Shuang; Jun, Chi-Hyuck; Jiang, Xiaoqian | JMIR medical informatics. | 2018 Apr 13; | 29653917 | |
| BiOnIC: A Catalog of User Interactions with Biomedical Ontologies. | Kamdar, Maulik R; Walk, Simon; Tudorache, Tania; Musen, Mark A | The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference. | 2017 Oct; | 29637199 | |
| Development of White Matter Circuitry in Infants With Fragile X Syndrome. | Swanson, Meghan R; Wolff, Jason J; Shen, Mark D; Styner, Martin; Estes, Annette; Gerig, Guido; McKinstry, Robert C; Botteron, Kelly N; Piven, Joseph; Hazlett, Heather C; Infant Brain Imaging Study (IBIS) Network | JAMA psychiatry. | 2018 05 01; | 29617515 | |
| Subcortical Brain and Behavior Phenotypes Differentiate Infants With Autism Versus Language Delay. | Swanson, Meghan R; Shen, Mark D; Wolff, Jason J; Elison, Jed T; Emerson, Robert W; Styner, Martin A; Hazlett, Heather C; Truong, Kinh; Watson, Linda R; Paterson, Sarah; Marrus, Natasha; Botteron, Kelly N; Pandey, Juhi; Schultz, Robert T; Dager, Stephen R; | Biological psychiatry. Cognitive neuroscience and neuroimaging. | 2017 11; | 29560900 | |
| Compressive Sensing Based Q-Space Resampling for Handling Fast Bulk Motion in Hardi Acquisitions. | Elhabian, Shireen; Vachet, Clement; Piven, Joseph; for IBIS; Styner, Martin; Gerig, Guido | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2016; | 29492184 | |
| PhLeGrA: Graph Analytics in Pharmacology over the Web of Life Sciences Linked Open Data. | Kamdar, Maulik R; Musen, Mark A | Proceedings of the ... International World-Wide Web Conference. International WWW Conference. | 2017 Apr; | 29479581 | |
| Annual Burden and Costs of Hospitalization for High-Need, High-Cost Patients with Chronic Gastrointestinal and Liver Diseases. | Nguyen, Nghia H; Khera, Rohan; Ohno-Machado, Lucila; Sandborn, William J; Singh, Siddharth | Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. | 2018 Feb 20; | 29474966 | |
| Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations. | Azad, Robert N; Zafiropoulos, Dana; Ober, Douglas; Jiang, Yining; Chiu, Tsu-Pei; Sagendorf, Jared M; Rohs, Remo; Tullius, Thomas D | Nucleic acids research. | 2018 Jan 30; | 29390080 | |
| Functional variants in the LRRK2 gene confer shared effects on risk for Crohn's disease and Parkinson's disease. | Hui, Ken Y; Fernandez-Hernandez, Heriberto; Hu, Jianzhong; Schaffner, Adam; Pankratz, Nathan; Hsu, Nai-Yun; Chuang, Ling-Shiang; Carmi, Shai; Villaverde, Nicole; Li, Xianting; Rivas, Manual; Levine, Adam P; Bao, Xiuliang; Labrias, Philippe R; Haritunians, | Science translational medicine. | 2018 01 10; | 29321258 | |
| Investigating the association between parity and the maternal neural response to infant cues. | Maupin, Angela N; Rutherford, Helena J V; Landi, Nicole; Potenza, Marc N; Mayes, Linda C | Social neuroscience. | 2019 04; | 29291661 | |
| Homeostatic Cell Growth Is Accomplished Mechanically through Membrane Tension Inhibition of Cell-Wall Synthesis. | Rojas, Enrique R; Huang, Kerwyn Casey; Theriot, Julie A | Cell systems. | 2017 Dec 27; | 29203279 | |
| Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach. | Weng, Wei-Hung; Wagholikar, Kavishwar B; McCray, Alexa T; Szolovits, Peter; Chueh, Henry C | BMC medical informatics and decision making. | 2017 Dec 01; | 29191207 | |
| PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens. | Spahn, Philipp N; Bath, Tyler; Weiss, Ryan J; Kim, Jihoon; Esko, Jeffrey D; Lewis, Nathan E; Harismendy, Olivier | Scientific reports. | 2017 Nov 20; | 29158538 | |
| Asymmetric and Symmetric Unbiased Image Registration: Statistical Assessment of Performance. | Yanovsky, Igor; Thompson, Paul M; Osher, Stanley; Leow, Alex D | Conference on Computer Vision and Pattern Recognition Workshops. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops. | 2008 Jun; | 29152411 | |
| A Likelihood-Free Approach for Characterizing Heterogeneous Diseases in Large-Scale Studies. | Schabdach, Jenna; Wells 3rd, William M; Cho, Michael; Batmanghelich, Kayhan N | Information processing in medical imaging : proceedings of the ... conference. | 2017 Jun; | 29129964 | |
| Enabling phenotypic big data with PheNorm. | Yu, Sheng; Ma, Yumeng; Gronsbell, Jessica; Cai, Tianrun; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Liao, Katherine P; Cai, Tianxi | Journal of the American Medical Informatics Association : JAMIA. | 2018 01 01; | 29126253 | |
| SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research. | Norton, Isaiah; Essayed, Walid Ibn; Zhang, Fan; Pujol, Sonia; Yarmarkovich, Alex; Golby, Alexandra J; Kindlmann, Gordon; Wassermann, Demian; Estepar, Raul San Jose; Rathi, Yogesh; Pieper, Steve; Kikinis, Ron; Johnson, Hans J; Westin, Carl-Fredrik; O'Donnell, Lauren J | Cancer research. | 2017 11 01; | 29092950 | |
| Temporal Annotation in the Clinical Domain. | Styler 4th, William F; Bethard, Steven; Finan, Sean; Palmer, Martha; Pradhan, Sameer; de Groen, Piet C; Erickson, Brad; Miller, Timothy; Lin, Chen; Savova, Guergana; Pustejovsky, James | Transactions of the Association for Computational Linguistics. | 2014 Apr; | 29082229 | |
| The MELD-Plus: A generalizable prediction risk score in cirrhosis. | Kartoun, Uri; Corey, Kathleen E; Simon, Tracey G; Zheng, Hui; Aggarwal, Rahul; Ng, Kenney; Shaw, Stanley Y | PloS one. | 2017; | 29069090 | |
| Semantic Modeling for Exposomics with Exploratory Evaluation in Clinical Context. | Fan, Jung-Wei; Li, Jianrong; Lussier, Yves A | Journal of healthcare engineering. | 2017; | 29065591 | |
| Traumatic Brain Injury Severity, Neuropathophysiology, and Clinical Outcome: Insights from Multimodal Neuroimaging. | Irimia, Andrei; Goh, Sheng-Yang Matthew; Wade, Adam C; Patel, Kavi; Vespa, Paul M; Van Horn, John D | Frontiers in neurology. | 2017; | 29051745 | |
| Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies. | Wang, Meng; Ji, Zhanglong; Wang, Shuang; Kim, Jihoon; Yang, Hai; Jiang, Xiaoqian; Ohno-Machado, Lucila | Bioinformatics (Oxford, England). | 2017 Dec 01; | 29036461 | |
| Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. | Luo, Yuan; Cheng, Yu; Uzuner, Özlem; Szolovits, Peter; Starren, Justin | Journal of the American Medical Informatics Association : JAMIA. | 2018 01 01; | 29025149 | |
| Biological and functional relevance of CASP predictions. | Liu, Tianyun; Ish-Shalom, Shirbi; Torng, Wen; Lafita, Aleix; Bock, Christian; Mort, Matthew; Cooper, David N; Bliven, Spencer; Capitani, Guido; Mooney, Sean D; Altman, Russ B | Proteins. | 2018 Mar; | 28975675 | |
| Subject-Specific Longitudinal Shape Analysis by Coupling Spatiotemporal Shape Modeling with Medial Analysis. | Hong, Sungmin; Fishbaugh, James; Rezanejad, Morteza; Siddiqi, Kaleem; Johnson, Hans; Paulsen, Jane; Kim, Eun Young; Gerig, Guido | Proceedings of SPIE--the International Society for Optical Engineering. | 2017 Apr; | 28966430 | |
| Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation. | van der Weyden, Louise; Karp, Natasha A; Swiatkowska, Agnieszka; Adams, David J; Speak, Anneliese O | Scientific data. | 2017 09 12; | 28895944 | |
| On the Role of Mechanics in Chronic Lung Disease. | Eskandari, Mona; Pfaller, Martin R; Kuhl, Ellen | Materials (Basel, Switzerland). | 2013 Dec 04; | 28788414 | |
| Genome-wide association analysis identifies common variants influencing infant brain volumes. | Xia, K; Zhang, J; Ahn, M; Jha, S; Crowley, J J; Szatkiewicz, J; Li, T; Zou, F; Zhu, H; Hibar, D; Thompson, P; ENIGMA Consortium; Sullivan, P F; Styner, M; Gilmore, J H; Knickmeyer, R C | Translational psychiatry. | 2017 Aug 01; | 28763065 | |
| A Mortality Study for ICU Patients using Bursty Medical Events. | Bonomi, Luca; Jiang, Xiaoqian | Proceedings. International Conference on Data Engineering. | 2017 Apr; | 28757793 | |
| OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. | Eastman, Peter; Swails, Jason; Chodera, John D; McGibbon, Robert T; Zhao, Yutong; Beauchamp, Kyle A; Wang, Lee-Ping; Simmonett, Andrew C; Harrigan, Matthew P; Stern, Chaya D; Wiewiora, Rafal P; Brooks, Bernard R; Pande, Vijay S | PLoS computational biology. | 2017 Jul; | 28746339 | |
| Simulating ideal assistive devices to reduce the metabolic cost of walking with heavy loads. | Dembia, Christopher L; Silder, Amy; Uchida, Thomas K; Hicks, Jennifer L; Delp, Scott L | PloS one. | 2017; | 28700630 | |
| Recurrent neural networks for classifying relations in clinical notes. | Luo, Yuan | Journal of biomedical informatics. | 2017 08; | 28694119 | |
| Self-Reported Compensation Techniques for Carbohydrate, Exercise, and Alcohol Behaviors in Patients With Type 1 Diabetes on Insulin Pump Therapy. | Groat, Danielle; Soni, Hiral; Grando, Maria Adela; Thompson, Bithika; Cook, Curtiss B | Journal of diabetes science and technology. | 2018 03; | 28677414 | |
| Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images. | Pohl, Kilian M; Fisher, John; Kikinis, Ron; Grimson, W Eric L; Wells, William M | Computer vision for biomedical image applications : first international workshop, CVBIA 2005, Beijing, China, October 21, 2005 : proceedings. CVBIA 2005 (2005 : Beijing, China). | 2005 Oct; | 28664197 | |
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| WaveformECG: A Platform for Visualizing, Annotating, and Analyzing ECG Data. | Winslow, Raimond L; Granite, Stephen; Jurado, Christian | Computing in science & engineering. | 2016 Sep-Oct; | 28642673 | |
| Multimodal Registration of White Matter Brain Data via Optimal Mass Transport. | Rehman, Tauseefur; Haber, Eldad; Pohl, Kilian M; Haker, Steven; Halle, Mike; Talos, Florin; Wald, Lawrence L; Kikinis, Ron; Tannenbaum, Allen | MIDAS journal. | 2008 Sep; | 28626844 | |
| How Do You #relax When You're #stressed? A Content Analysis and Infodemiology Study of Stress-Related Tweets. | Doan, Son; Ritchart, Amanda; Perry, Nicholas; Chaparro, Juan D; Conway, Mike | JMIR public health and surveillance. | 2017 Jun 13; | 28611016 | |
| MONITORING SLOWLY EVOLVING TUMORS. | Konukoglu, E; Wells, W M; Novellas, S; Ayache, N; Kikinis, R; Black, P M; Pohl, K M | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2008 May; | 28593030 | |
| NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. | Martínez-Romero, Marcos; Jonquet, Clement; O'Connor, Martin J; Graybeal, John; Pazos, Alejandro; Musen, Mark A | Journal of biomedical semantics. | 2017 Jun 07; | 28592275 | |
| An empirical analysis of ontology reuse in BioPortal. | Ochs, Christopher; Perl, Yehoshua; Geller, James; Arabandi, Sivaram; Tudorache, Tania; Musen, Mark A | Journal of biomedical informatics. | 2017 Jul; | 28583809 | |
| ShapeCut: Bayesian surface estimation using shape-driven graph. | Veni, Gopalkrishna; Elhabian, Shireen Y; Whitaker, Ross T | Medical image analysis. | 2017 Aug; | 28582702 | |
| Age-Related Autonomous Aldosteronism. | Nanba, Kazutaka; Vaidya, Anand; Williams, Gordon H; Zheng, Isabel; Else, Tobias; Rainey, William E | Circulation. | 2017 Jul 25; | 28566337 | |
| Germ-Cell-Specific Inflammasome Component NLRP14 Negatively Regulates Cytosolic Nucleic Acid Sensing to Promote Fertilization. | Abe, Takayuki; Lee, Albert; Sitharam, Ramaswami; Kesner, Jordan; Rabadan, Raul; Shapira, Sagi D | Immunity. | 2017 04 18; | 28423339 | |
| A Methodology to Compare Insulin Dosing Recommendations in Real-Life Settings. | Groat, Danielle; Grando, Maria A; Thompson, Bithika; Neto, Pedro; Soni, Hiral; Boyle, Mary E; Bailey, Marilyn; Cook, Curtiss B | Journal of diabetes science and technology. | 2017 Nov; | 28406039 | |
| Geodesic shape regression with multiple geometries and sparse parameters. | Fishbaugh, James; Durrleman, Stanley; Prastawa, Marcel; Gerig, Guido | Medical image analysis. | 2017 Jul; | 28399476 | |
| Robust automated constellation-based landmark detection in human brain imaging. | Ghayoor, Ali; Vaidya, Jatin G; Johnson, Hans J | NeuroImage. | 2017 Apr 06; | 28392490 | |
| Combining clinical and genomics queries using i2b2 - Three methods. | Murphy, Shawn N; Avillach, Paul; Bellazzi, Riccardo; Phillips, Lori; Gabetta, Matteo; Eran, Alal; McDuffie, Michael T; Kohane, Isaac S | PloS one. | 2017; | 28388645 | |
| Genetic effects influencing risk for major depressive disorder in China and Europe. | Bigdeli, T B; Ripke, S; Peterson, R E; Trzaskowski, M; Bacanu, S-A; Abdellaoui, A; Andlauer, T F M; Beekman, A T F; Berger, K; Blackwood, D H R; Boomsma, D I; Breen, G; Buttenschøn, H N; Byrne, E M; Cichon, S; Clarke, T-K; Couvy-Duchesne, B; Craddock, N; de Geus, E J C; Degenhardt, F; Dunn, E C; Edwards, A C; Fanous, A H; Forstner, A J; Frank, J; Gill, M; Gordon, S D; Grabe, H J; Hamilton, S P; Hardiman, O; Hayward, C; Heath, A C; Henders, A K; Herms, S; Hickie, I B; Hoffmann, P; Homuth, G; Hottenga, J-J; Ising, M; Jansen, R; Kloiber, S; Knowles, J A; Lang, M; Li, Q S; Lucae, S; MacIntyre, D J; Madden, P A F; Martin, N G; McGrath, P J; McGuffin, P; McIntosh, A M; Medland, S E; Mehta, D; Middeldorp, C M; Milaneschi, Y; Montgomery, G W; Mors, O; Müller-Myhsok, B; Nauck, M; Nyholt, D R; Nöthen, M M; Owen, M J; Penninx, B W J H; Pergadia, M L; Perlis, R H; Peyrot, W J; Porteous, D J; Potash, J B; Rice, J P; Rietschel, M; Riley, B P; Rivera, M; Schoevers, R; Schulze, T G; Shi, J; Shyn, S I; Smit, J H; Smoller, J W; Streit, F; Strohmaier, J; Teumer, A; Treutlein, J; Van der Auwera, S; van Grootheest, G; van Hemert, A M; Völzke, H; Webb, B T; Weissman, M M; Wellmann, J; Willemsen, G; Witt, S H; Levinson, D F; Lewis, C M; Wray, N R; Flint, J; Sullivan, P F; Kendler, K S | Translational psychiatry. | 2017 03 28; | 28350396 | |
| Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. | Raisaro, Jean Louis; Tramèr, Florian; Ji, Zhanglong; Bu, Diyue; Zhao, Yongan; Carey, Knox; Lloyd, David; Sofia, Heidi; Baker, Dixie; Flicek, Paul; Shringarpure, Suyash; Bustamante, Carlos; Wang, Shuang; Jiang, Xiaoqian; Ohno-Machado, Lucila; Tang, Haixu; Wang, XiaoFeng; Hubaux, Jean-Pierre | Journal of the American Medical Informatics Association : JAMIA. | 2017 Jul 01; | 28339683 | |
| Renin Phenotypes Characterize Vascular Disease, Autonomous Aldosteronism, and Mineralocorticoid Receptor Activity. | Hundemer, Gregory L; Baudrand, Rene; Brown, Jenifer M; Curhan, Gary; Williams, Gordon H; Vaidya, Anand | The Journal of clinical endocrinology and metabolism. | 2017 Jun 01; | 28323995 | |
| Neural circuitry at age 6 months associated with later repetitive behavior and sensory responsiveness in autism. | Wolff, Jason J; Swanson, Meghan R; Elison, Jed T; Gerig, Guido; Pruett Jr, John R; Styner, Martin A; Vachet, Clement; Botteron, Kelly N; Dager, Stephen R; Estes, Annette M; Hazlett, Heather C; Schultz, Robert T; Shen, Mark D; Zwaigenbaum, Lonnie; Piven, Joseph; IBIS Network | Molecular autism. | 2017; | 28316772 | |
| Naturalistic Language Recordings Reveal ''Hypervocal'' Infants at High Familial Risk for Autism. | Swanson, Meghan R; Shen, Mark D; Wolff, Jason J; Boyd, Brian; Clements, Mark; Rehg, James; Elison, Jed T; Paterson, Sarah; Parish-Morris, Julia; Chappell, J Chad; Hazlett, Heather C; Emerson, Robert W; Botteron, Kelly; Pandey, Juhi; Schultz, Robert T; Dager, Stephen R; Zwaigenbaum, Lonnie; Estes, Annette M; Piven, Joseph; IBIS Network | Child development. | 2017 Mar 10; | 28295208 | |
| Ensembles of NLP Tools for Data Element Extraction from Clinical Notes. | Kuo, Tsung-Ting; Rao, Pallavi; Maehara, Cleo; Doan, Son; Chaparro, Juan D; Day, Michele E; Farcas, Claudiu; Ohno-Machado, Lucila; Hsu, Chun-Nan | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2016; | 28269947 | |
| PREMIX: PRivacy-preserving EstiMation of Individual admiXture. | Chen, Feng; Dow, Michelle; Ding, Sijie; Lu, Yao; Jiang, Xiaoqian; Tang, Hua; Wang, Shuang | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2016; | 28269933 | |
| Early brain development in infants at high risk for autism spectrum disorder. | Hazlett, Heather Cody; Gu, Hongbin; Munsell, Brent C; Kim, Sun Hyung; Styner, Martin; Wolff, Jason J; Elison, Jed T; Swanson, Meghan R; Zhu, Hongtu; Botteron, Kelly N; Collins, D Louis; Constantino, John N; Dager, Stephen R; Estes, Annette M; Evans, Alan C; Fonov, Vladimir S; Gerig, Guido; Kostopoulos, Penelope; McKinstry, Robert C; Pandey, Juhi; Paterson, Sarah; Pruett, John R; Schultz, Robert T; Shaw, Dennis W; Zwaigenbaum, Lonnie; Piven, Joseph; IBIS Network; Clinical Sites; Data Coordinating Center; Image Processing Core; Statistical Analysis | Nature. | 2017 02 15; | 28202961 | |
| UNC-Emory Infant Atlases for Macaque Brain Image Analysis: Postnatal Brain Development through 12 Months. | Shi, Yundi; Budin, Francois; Yapuncich, Eva; Rumple, Ashley; Young, Jeffrey T; Payne, Christa; Zhang, Xiaodong; Hu, Xiaoping; Godfrey, Jodi; Howell, Brittany; Sanchez, Mar M; Styner, Martin A | Frontiers in neuroscience. | 2016; | 28119564 | |
| Efficient Descriptor-Based Segmentation of Parotid Glands With Nonlocal Means. | Wachinger, Christian; Brennan, Matthew; Sharp, Greg C; Golland, Polina | IEEE transactions on bio-medical engineering. | 2017 Jul; | 28113224 | |
| Transformations Based on Continuous Piecewise-Affine Velocity Fields. | Freifeld, Oren; Hauberg, Soren; Batmanghelich, Kayhan; Fisher, Jonn W | IEEE transactions on pattern analysis and machine intelligence. | 2017 Dec; | 28092517 | |
| OPTIMAL PARAMETER MAP ESTIMATION FOR SHAPE REPRESENTATION: A GENERATIVE APPROACH. | Elhabian, Shireen Y; Agrawal, Praful; Whitaker, Ross T | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2016 Apr; | 28090247 | |
| PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. | Chen, Feng; Wang, Shuang; Jiang, Xiaoqian; Ding, Sijie; Lu, Yao; Kim, Jihoon; Sahinalp, S Cenk; Shimizu, Chisato; Burns, Jane C; Wright, Victoria J; Png, Eileen; Hibberd, Martin L; Lloyd, David D; Yang, Hai; Telenti, Amalio; Bloss, Cinnamon S; Fox, Dov; Lauter, Kristin; Ohno-Machado, Lucila | Bioinformatics (Oxford, England). | 2017 Jan 08; | 28065902 | |
| Preparatory co-activation of the ankle muscles may prevent ankle inversion injuries. | DeMers, Matthew S; Hicks, Jennifer L; Delp, Scott L | Journal of biomechanics. | 2017 Feb 08; | 28057351 | |
| Genome-wide in vivo screen identifies novel host regulators of metastatic colonization. | van der Weyden, Louise; Arends, Mark J; Campbell, Andrew D; Bald, Tobias; Wardle-Jones, Hannah; Griggs, Nicola; Velasco-Herrera, Martin Del Castillo; Tüting, Thomas; Sansom, Owen J; Karp, Natasha A; Clare, Simon; Gleeson, Diane; Ryder, Edward; Galli, Antonella; Tuck, Elizabeth; Cambridge, Emma L; Voet, Thierry; Macaulay, Iain C; Wong, Kim; Sanger Mouse Genetics Project; Spiegel, Sarah; Speak, Anneliese O; Adams, David J | Nature. | 2017 01 12; | 28052056 | |
| Mechanical characterization of human brain tissue. | Budday, S; Sommer, G; Birkl, C; Langkammer, C; Haybaeck, J; Kohnert, J; Bauer, M; Paulsen, F; Steinmann, P; Kuhl, E; Holzapfel, G A | Acta biomaterialia. | 2017 01 15; | 27989920 | |
| FGFR1 and NTRK3 actionable alterations in ''Wild-Type'' gastrointestinal stromal tumors. | Shi, Eileen; Chmielecki, Juliann; Tang, Chih-Min; Wang, Kai; Heinrich, Michael C; Kang, Guhyun; Corless, Christopher L; Hong, David; Fero, Katherine E; Murphy, James D; Fanta, Paul T; Ali, Siraj M; De Siena, Martina; Burgoyne, Adam M; Movva, Sujana; Madlensky, Lisa; Heestand, Gregory M; Trent, Jonathan C; Kurzrock, Razelle; Morosini, Deborah; Ross, Jeffrey S; Harismendy, Olivier; Sicklick, Jason K | Journal of translational medicine. | 2016 Dec 14; | 27974047 | |
| A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions. | Stockman, Victoria B; Ghamsari, Lila; Lasso, Gorka; Honig, Barry; Shapira, Sagi D; Wang, Harris H | PloS one. | 2016; | 27936040 | |
| The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). | MacArthur, Jacqueline; Bowler, Emily; Cerezo, Maria; Gil, Laurent; Hall, Peggy; Hastings, Emma; Junkins, Heather; McMahon, Aoife; Milano, Annalisa; Morales, Joannella; Pendlington, Zoe May; Welter, Danielle; Burdett, Tony; Hindorff, Lucia; Flicek, Paul; Cunningham, Fiona; Parkinson, Helen | Nucleic acids research | 2017 01 04 | 27899670 | |
| A Predictive Model for Medical Events Based on Contextual Embedding of Temporal Sequences. | Farhan, Wael; Wang, Zhimu; Huang, Yingxiang; Wang, Shuang; Wang, Fei; Jiang, Xiaoqian | JMIR medical informatics. | ; | 27888170 | |
| Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities. | Nazeen, Sumaiya; Palmer, Nathan P; Berger, Bonnie; Kohane, Isaac S | Genome biology. | 2016 Nov 14; | 27842596 | |
| Exploring the neural substrates of attentional control and human intelligence: Diffusion tensor imaging of prefrontal white matter tractography in healthy cognition. | Ohtani, Toshiyuki; Nestor, Paul G; Bouix, Sylvain; Newell, Dominick; Melonakos, Eric D; McCarley, Robert W; Shenton, Martha E; Kubicki, Marek | Neuroscience. | 2017 01 26; | 27840231 | |
| Senp1 drives hypoxia-induced polycythemia via GATA1 and Bcl-xL in subjects with Monge's disease. | Azad, Priti; Zhao, Huiwen W; Cabrales, Pedro J; Ronen, Roy; Zhou, Dan; Poulsen, Orit; Appenzeller, Otto; Hsiao, Yu Hsin; Bafna, Vineet; Haddad, Gabriel G | The Journal of experimental medicine. | 2016 Nov 14; | 27821551 | |
| Modeling 4D Pathological Changes by Leveraging Normative Models. | Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Saha, Avishek; Liu, Wei; Goh, S Y Matthew; Vespa, Paul M; Van Horn, John D; Gerig, Guido | Computer vision and image understanding : CVIU. | 2016 Oct; | 27818606 | |
| Multimodal neuroimaging computing: the workflows, methods, and platforms. | Liu, Sidong; Cai, Weidong; Liu, Siqi; Zhang, Fan; Fulham, Michael; Feng, Dagan; Pujol, Sonia; Kikinis, Ron | Brain informatics. | 2015 Sep; | 27747508 | |
| Multimodal neuroimaging computing: a review of the applications in neuropsychiatric disorders. | Liu, Sidong; Cai, Weidong; Liu, Siqi; Zhang, Fan; Fulham, Michael; Feng, Dagan; Pujol, Sonia; Kikinis, Ron | Brain informatics. | 2015 Sep; | 27747507 | |
| Twin-singleton developmental study of brain white matter anatomy. | Sadeghi, Neda; Gilmore, John H; Gerig, Guido | Human brain mapping. | 2017 Feb; | 27739634 | |
| Estimation of Maximum Recommended Therapeutic Dose Using Predicted Promiscuity and Potency. | Liu, T; Oprea, T; Ursu, O; Hasselgren, C; Altman, R B | Clinical and translational science. | 2016 12; | 27736015 | |
| Protecting genomic data analytics in the cloud: state of the art and opportunities. | Tang, Haixu; Jiang, Xiaoqian; Wang, Xiaofeng; Wang, Shuang; Sofia, Heidi; Fox, Dov; Lauter, Kristin; Malin, Bradley; Telenti, Amalio; Xiong, Li; Ohno-Machado, Lucila | BMC medical genomics. | 2016 Oct 13; | 27733153 | |
| Defects in muscle branched-chain amino acid oxidation contribute to impaired lipid metabolism. | Lerin, Carles; Goldfine, Allison B; Boes, Tanner; Liu, Manway; Kasif, Simon; Dreyfuss, Jonathan M; De Sousa-Coelho, Ana Luisa; Daher, Grace; Manoli, Irini; Sysol, Justin R; Isganaitis, Elvira; Jessen, Niels; Goodyear, Laurie J; Beebe, Kirk; Gall, Walt; Venditti, Charles P; Patti, Mary-Elizabeth | Molecular metabolism. | 2016 Oct; | 27689005 | |
| Dictionary Pruning with Visual Word Significance for Medical Image Retrieval. | Zhang, Fan; Song, Yang; Cai, Weidong; Hauptmann, Alexander G; Liu, Sidong; Pujol, Sonia; Kikinis, Ron; Fulham, Michael J; Feng, David Dagan; Chen, Mei | Neurocomputing. | 2016 Feb 12; | 27688597 | |
| Genome privacy: challenges, technical approaches to mitigate risk, and ethical considerations in the United States. | Wang, Shuang; Jiang, Xiaoqian; Singh, Siddharth; Marmor, Rebecca; Bonomi, Luca; Fox, Dov; Dow, Michelle; Ohno-Machado, Lucila | Annals of the New York Academy of Sciences. | 2016 Sep 28; | 27681358 | |
| Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running. | Uchida, Thomas K; Seth, Ajay; Pouya, Soha; Dembia, Christopher L; Hicks, Jennifer L; Delp, Scott L | PloS one. | 2016; | 27656901 | |
| Efficient Descriptor-Based Segmentation of Parotid Glands with Non-Local Means. | Wachinger, Christian; Brennan, Matthew; Sharp, Greg; Golland, Polina | IEEE transactions on bio-medical engineering. | 2016 Sep 16; | 27654039 | |
| Partial LVAD restores ventricular outputs and normalizes LV but not RV stress distributions in the acutely failing heart in silico. | Sack, Kevin L; Baillargeon, Brian; Acevedo-Bolton, Gabriel; Genet, Martin; Rebelo, Nuno; Kuhl, Ellen; Klein, Liviu; Weiselthaler, Georg M; Burkhoff, Daniel; Franz, Thomas; Guccione, Julius M | The International journal of artificial organs. | 2016 Oct 10; | 27646633 | |
| Extracellular vesicles released by hepatocytes from gastric infusion model of alcoholic liver disease contain a MicroRNA barcode that can be detected in blood. | Eguchi, Akiko; Lazaro, Raul G; Wang, Jiaohong; Kim, Jihoon; Povero, Davide; Willliams, Brandon; Ho, Samuel B; Stärkel, Peter; Schnabl, Bernd; Ohno-Machado, Lucila; Tsukamoto, Hidekazu; Feldstein, Ariel E | Hepatology (Baltimore, Md.). | 2017 Feb; | 27639178 | |
| Acetylation-regulated interaction between p53 and SET reveals a widespread regulatory mode. | Wang, Donglai; Kon, Ning; Lasso, Gorka; Jiang, Le; Leng, Wenchuan; Zhu, Wei-Guo; Qin, Jun; Honig, Barry; Gu, Wei | Nature. | 2016 Oct 06; | 27626385 | |
| Differences in GlycA and lipoprotein particle parameters may help distinguish acute kawasaki disease from other febrile illnesses in children. | Connelly, Margery A; Shimizu, Chisato; Winegar, Deborah A; Shalaurova, Irina; Pourfarzib, Ray; Otvos, James D; Kanegaye, John T; Tremoulet, Adriana H; Burns, Jane C | BMC pediatrics. | 2016 Sep 05; | 27596163 | |
| Characterization of Exercise and Alcohol Self-Management Behaviors of Type 1 Diabetes Patients on Insulin Pump Therapy. | Grando, Maria Adela; Groat, Danielle; Soni, Hiral; Boyle, Mary; Bailey, Marilyn; Thompson, Bithika; Cook, Curtiss B | Journal of diabetes science and technology. | 2017 Mar; | 27595712 | |
| Self-Management Behaviors in Adults on Insulin Pump Therapy. | Groat, Danielle; Grando, Maria Adela; Soni, Hiral; Thompson, Bithika; Boyle, Mary; Bailey, Marilyn; Cook, Curtiss B | Journal of diabetes science and technology. | 2017 Mar; | 27587370 | |
| PALME: PAtients Like My gEnome. | Wang, Lichang; Fang, Yong; Aref, Dima; Rathi, Suyash; Shen, Li; Jiang, Xiaoqian; Wang, Shuang | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2016; | 27570674 | |
| Diagnostic Test Accuracy of a 2-Transcript Host RNA Signature for Discriminating Bacterial vs Viral Infection in Febrile Children. | Herberg, Jethro A; Kaforou, Myrsini; Wright, Victoria J; Shailes, Hannah; Eleftherohorinou, Hariklia; Hoggart, Clive J; Cebey-López, Miriam; Carter, Michael J; Janes, Victoria A; Gormley, Stuart; Shimizu, Chisato; Tremoulet, Adriana H; Barendregt, Anouk M; Salas, Antonio; Kanegaye, John; Pollard, Andrew J; Faust, Saul N; Patel, Sanjay; Kuijpers, Taco; Martinón-Torres, Federico; Burns, Jane C; Coin, Lachlan J M; Levin, Michael; IRIS Consortium | JAMA. | 2016 Aug 23-30; | 27552617 | |
| Making a meaningful impact: modelling simultaneous frictional collisions in spatial multibody systems. | Uchida, Thomas K; Sherman, Michael A; Delp, Scott L | Proceedings. Mathematical, physical, and engineering sciences. | 2015 May 08; | 27547093 | |
| Genetic Misdiagnoses and the Potential for Health Disparities. | Manrai, Arjun K; Funke, Birgit H; Rehm, Heidi L; Olesen, Morten S; Maron, Bradley A; Szolovits, Peter; Margulies, David M; Loscalzo, Joseph; Kohane, Isaac S | The New England journal of medicine. | 2016 Aug 18; | 27532831 | |
| Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience. | Kapur, Tina; Pieper, Steve; Fedorov, Andriy; Fillion-Robin, J-C; Halle, Michael; O'Donnell, Lauren; Lasso, Andras; Ungi, Tamas; Pinter, Csaba; Finet, Julien; Pujol, Sonia; Jagadeesan, Jayender; Tokuda, Junichi; Norton, Isaiah; Estepar, Raul San Jose; Gering, David; Aerts, Hugo J W L; Jakab, Marianna; Hata, Nobuhiko; Ibanez, Luiz; Blezek, Daniel; Miller, Jim; Aylward, Stephen; Grimson, W Eric L; Fichtinger, Gabor; Wells, William M; Lorensen, William E; Schroeder, Will; Kikinis, Ron | Medical image analysis. | 2016 Oct; | 27498015 | |
| Transition path theory analysis of c-Src kinase activation. | Meng, Yilin; Shukla, Diwakar; Pande, Vijay S; Roux, Benoît | Proceedings of the National Academy of Sciences of the United States of America. | 2016 08 16; | 27482115 | |
| Efficient Queries of Stand-off Annotations for Natural Language Processing on Electronic Medical Records. | Luo, Yuan; Szolovits, Peter | Biomedical informatics insights. | 2016; | 27478379 | |
| PATTERN: Pain Assessment for paTients who can't TEll using Restricted Boltzmann machiNe. | Yang, Lei; Wang, Shuang; Jiang, Xiaoqian; Cheng, Samuel; Kim, Hyeon-Eui | BMC medical informatics and decision making. | 2016 Jul 25; | 27454233 | |
| Secure Multi-pArty Computation Grid LOgistic REgression (SMAC-GLORE). | Shi, Haoyi; Jiang, Chao; Dai, Wenrui; Jiang, Xiaoqian; Tang, Yuzhe; Ohno-Machado, Lucila; Wang, Shuang | BMC medical informatics and decision making. | 2016 Jul 25; | 27454168 | |
| Immune DNA signature of T-cell infiltration in breast tumor exomes. | Levy, Eric; Marty, Rachel; Gárate Calderón, Valentina; Woo, Brian; Dow, Michelle; Armisen, Ricardo; Carter, Hannah; Harismendy, Olivier | Scientific reports. | 2016 Jul 25; | 27452728 | |
| Full-Body Musculoskeletal Model for Muscle-Driven Simulation of Human Gait. | Rajagopal, Apoorva; Dembia, Christopher L; DeMers, Matthew S; Delp, Denny D; Hicks, Jennifer L; Delp, Scott L | IEEE transactions on bio-medical engineering. | 2016 10; | 27392337 | |
| Tobacco Smoking and the Resting Maternal Brain: A Preliminary Study of Frontal EEG. | Wilbanks, Haley E; Von Mohr, Mariana; Potenza, Marc N; Mayes, Linda C; Rutherford, Helena J V | The Yale journal of biology and medicine. | 2016 Jun; | 27354838 | |
| Longitudinal modeling of appearance and shape and its potential for clinical use. | Gerig, Guido; Fishbaugh, James; Sadeghi, Neda | Medical image analysis. | 2016 Oct; | 27344938 | |
| 3D Mandibular Superimposition: Comparison of Regions of Reference for Voxel-Based Registration. | Ruellas, Antonio Carlos de Oliveira; Yatabe, Marilia Sayako; Souki, Bernardo Quiroga; Benavides, Erika; Nguyen, Tung; Luiz, Ronir Raggio; Franchi, Lorenzo; Cevidanes, Lucia Helena Soares | PloS one. | 2016; | 27336366 | |
| Lipids Regulate Lck Protein Activity through Their Interactions with the Lck Src Homology 2 Domain. | Sheng, Ren; Jung, Da-Jung; Silkov, Antonina; Kim, Hyunjin; Singaram, Indira; Wang, Zhi-Gang; Xin, Yao; Kim, Eui; Park, Mi-Jeong; Thiagarajan-Rosenkranz, Pallavi; Smrt, Sean; Honig, Barry; Baek, Kwanghee; Ryu, Sungho; Lorieau, Justin; Kim, You-Me; Cho, Wonhwa | The Journal of biological chemistry. | 2016 08 19; | 27334919 | |
| Functional characterization of somatic mutations in cancer using network-based inference of protein activity. | Alvarez, Mariano J; Shen, Yao; Giorgi, Federico M; Lachmann, Alexander; Ding, B Belinda; Ye, B Hilda; Califano, Andrea | Nature genetics. | 2016 08; | 27322546 | |
| The Real-World Effectiveness and Safety of Vedolizumab for Moderate-Severe Crohn's Disease: Results From the US VICTORY Consortium. | Dulai, Parambir S; Singh, Siddharth; Jiang, Xiaoqian; Peerani, Farhad; Narula, Neeraj; Chaudrey, Khadija; Whitehead, Diana; Hudesman, David; Lukin, Dana; Swaminath, Arun; Shmidt, Eugenia; Wang, Shuang; Boland, Brigid S; Chang, John T; Kane, Sunanda; Siegel, Corey A; Loftus, Edward V; Sandborn, William J; Sands, Bruce E; Colombel, Jean-Frederic | The American journal of gastroenterology. | ; | 27296941 | |
| Antenatal depression, treatment with selective serotonin reuptake inhibitors, and neonatal brain structure: A propensity-matched cohort study. | Jha, Shaili C; Meltzer-Brody, Samantha; Steiner, Rachel J; Cornea, Emil; Woolson, Sandra; Ahn, Mihye; Verde, Audrey R; Hamer, Robert M; Zhu, Hongtu; Styner, Martin; Gilmore, John H; Knickmeyer, Rebecca C | Psychiatry research. | 2016 Jul 30; | 27254086 | |
| Parental reflective functioning and the neural correlates of processing infant affective cues. | Rutherford, Helena J V; Maupin, Angela N; Landi, Nicole; Potenza, Marc N; Mayes, Linda C | Social neuroscience. | 2017 10; | 27253222 | |
| Learning statistical models of phenotypes using noisy labeled training data. | Agarwal, Vibhu; Podchiyska, Tanya; Banda, Juan M; Goel, Veena; Leung, Tiffany I; Minty, Evan P; Sweeney, Timothy E; Gyang, Elsie; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA. | 2016 11; | 27174893 | |
| Linear Models Based on Noisy Data and the Frisch Scheme. | Ning, Lipeng; Georgiou, Tryphon T; Tannenbaum, Allen; Boyd, Stephen P | SIAM review. Society for Industrial and Applied Mathematics. | 2015; | 27168672 | |
| Probability Distributome: A Web Computational Infrastructure for Exploring the Properties, Interrelations, and Applications of Probability Distributions. | Dinov, Ivo D; Siegrist, Kyle; Pearl, Dennis K; Kalinin, Alexandr; Christou, Nicolas | Computational statistics. | 2016 Jun; | 27158191 | |
| ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information. | Lachmann, Alexander; Giorgi, Federico M; Lopez, Gonzalo; Califano, Andrea | Bioinformatics (Oxford, England). | 2016 07 15; | 27153652 | |
| Cronkhite Canada Syndrome: Significant Response to Infliximab and a Possible Clue to Pathogenesis. | Boland, Brigid S; Bagi, Preet; Valasek, Mark A; Chang, John T; Bustamante, Ranier; Madlensky, Lisa; Sandborn, William J; Harismendy, Olivier; Gupta, Samir | The American journal of gastroenterology. | 2016 05; | 27151126 | |
| Common 3-dimensional coordinate system for assessment of directional changes. | Ruellas, Antonio Carlos de Oliveira; Tonello, Cristiano; Gomes, Liliane Rosas; Yatabe, Marilia Sayako; Macron, Lucie; Lopinto, Julia; Goncalves, Joao Roberto; Garib Carreira, Daniela Gamba; Alonso, Nivaldo; Souki, Bernardo Quiroga; Coqueiro, Raildo da Silva; Cevidanes, Lucia Helena Soares | American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics. | 2016 May; | 27131246 | |
| Markov State Models and tICA Reveal a Nonnative Folding Nucleus in Simulations of NuG2. | Schwantes, Christian R; Shukla, Diwakar; Pande, Vijay S | Biophysical journal. | 2016 04 26; | 27119632 | |
| Discovery of a regioselectivity switch in nitrating P450s guided by molecular dynamics simulations and Markov models. | Dodani, Sheel C; Kiss, Gert; Cahn, Jackson K B; Su, Ye; Pande, Vijay S; Arnold, Frances H | Nature chemistry. | 2016 May; | 27102675 | |
| Influence of APOE Genotype on Hippocampal Atrophy over Time - An N=1925 Surface-Based ADNI Study. | Li, Bolun; Shi, Jie; Gutman, Boris A; Baxter, Leslie C; Thompson, Paul M; Caselli, Richard J; Wang, Yalin; Alzheimer?s Disease Neuroimaging Initiative | PloS one. | 2016; | 27065111 | |
| Single-index varying coefficient model for functional responses. | Luo, Xinchao; Zhu, Lixing; Zhu, Hongtu | Biometrics. | 2016 Dec; | 27061414 | |
| SH2 Domains Serve as Lipid-Binding Modules for pTyr-Signaling Proteins. | Park, Mi-Jeong; Sheng, Ren; Silkov, Antonina; Jung, Da-Jung; Wang, Zhi-Gang; Xin, Yao; Kim, Hyunjin; Thiagarajan-Rosenkranz, Pallavi; Song, Seohyeon; Yoon, Youngdae; Nam, Wonhee; Kim, Ilshin; Kim, Eui; Lee, Dong-Gyu; Chen, Yong; Singaram, Indira; Wang, Li; Jang, Myoung Ho; Hwang, Cheol-Sang; Honig, Barry; Ryu, Sungho; Lorieau, Justin; Kim, You-Me; Cho, Wonhwa | Molecular cell. | 2016 Apr 07; | 27052731 | |
| Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates. | Jupp, Simon; Burdett, Tony; Welter, Danielle; Sarntivijai, Sirarat; Parkinson, Helen; Malone, James | Journal of biomedical semantics. | 2016; | 27042287 | |
| Conformational heterogeneity of the calmodulin binding interface. | Shukla, Diwakar; Peck, Ariana; Pande, Vijay S | Nature communications. | 2016 Apr 04; | 27040077 | |
| Linking MedDRA(®)-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors. | Sarntivijai, Sirarat; Zhang, Shelley; Jagannathan, Desikan G; Zaman, Shadia; Burkhart, Keith K; Omenn, Gilbert S; He, Yongqun; Athey, Brian D; Abernethy, Darrell R | Drug safety. | 2016 Jul; | 27003817 | |
| Tensor factorization toward precision medicine. | Luo, Yuan; Wang, Fei; Szolovits, Peter | Briefings in bioinformatics. | 2017 05 01; | 26994614 | |
| Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. | Ochs, Christopher; He, Zhe; Zheng, Ling; Geller, James; Perl, Yehoshua; Hripcsak, George; Musen, Mark A | Journal of biomedical informatics. | 2016 Jun; | 26988001 | |
| Differentially Private Histogram Publication For Dynamic Datasets: An Adaptive Sampling Approach. | Li, Haoran; Jiang, Xiaoqian; Xiong, Li; Liu, Jinfei | Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management. | 2015 Oct; | 26973795 | |
| Non-Euclidean classification of medically imaged objects via s-reps. | Hong, Junpyo; Vicory, Jared; Schulz, Jörn; Styner, Martin; Marron, J S; Pizer, Stephen M | Medical image analysis. | 2016 Jul; | 26963609 | |
| Semi-supervised Learning for Phenotyping Tasks. | Dligach, Dmitriy; Miller, Timothy; Savova, Guergana K | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2015; | 26958183 | |
| Amino Acids Rather than Glucose Account for the Majority of Cell Mass in Proliferating Mammalian Cells. | Hosios, Aaron M; Hecht, Vivian C; Danai, Laura V; Johnson, Marc O; Rathmell, Jeffrey C; Steinhauser, Matthew L; Manalis, Scott R; Vander Heiden, Matthew G | Developmental cell. | 2016 Mar 07; | 26954548 | |
| Cross-View Neuroimage Pattern Analysis in Alzheimer's Disease Staging. | Liu, Sidong; Cai, Weidong; Pujol, Sonia; Kikinis, Ron; Feng, Dagan D; Alzheimer's Disease Neuroimaging Initiative | Frontiers in aging neuroscience. | 2016; | 26941639 | |
| Comparative Effectiveness of Infliximab and Adalimumab in Crohn's Disease and Ulcerative Colitis. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Cai, Tianxi; Gainer, Vivian S; Shaw, Stanley Y; Savova, Guergana; Churchill, Susanne; Karlson, Elizabeth W; Kohane, Isaac; Liao, Katherine P; Murphy, Shawn N | Inflammatory bowel diseases. | 2016 Apr; | 26933751 | |
| Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running. | Uchida, Thomas K; Hicks, Jennifer L; Dembia, Christopher L; Delp, Scott L | PloS one. | 2016; | 26930416 | |
| Using an Electronic Medical Records Database to Identify Non-Traditional Cardiovascular Risk Factors in Nonalcoholic Fatty Liver Disease. | Corey, Kathleen E; Kartoun, Uri; Zheng, Hui; Chung, Raymond T; Shaw, Stanley Y | The American journal of gastroenterology. | 2016 May; | 26925881 | |
| Statin Use Is Associated With Reduced Risk of Colorectal Cancer in Patients With Inflammatory Bowel Diseases. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Cai, Tianxi; Gainer, Vivian S; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Liao, Katherine P; Kohane, Isaac | Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. | 2016 Jul; | 26905907 | |
| Apathy Is Associated With Ventral Striatum Volume in Schizophrenia Spectrum Disorder. | Roth, Robert M; Garlinghouse, Matthew A; Flashman, Laura A; Koven, Nancy S; Pendergrass, J Cara; Ford, James C; McAllister, Thomas W; Saykin, Andrew J | The Journal of neuropsychiatry and clinical neurosciences. | 2016; | 26900738 | |
| BFLCRM: A BAYESIAN FUNCTIONAL LINEAR COX REGRESSION MODEL FOR PREDICTING TIME TO CONVERSION TO ALZHEIMER'S DISEASE. | Lee, Eunjee; Zhu, Hongtu; Kong, Dehan; Wang, Yalin; Giovanello, Kelly Sullivan; Ibrahim, Joseph G | The annals of applied statistics. | 2015 Dec; | 26900412 | |
| Using 3D Modeling Techniques to Enhance Teaching of Difficult Anatomical Concepts. | Pujol, Sonia; Baldwin, Michael; Nassiri, Joshua; Kikinis, Ron; Shaffer, Kitt | Academic radiology. | 2016 Apr; | 26897601 | |
| Interactive Whole-Heart Segmentation in Congenital Heart Disease. | Pace, Danielle F; Dalca, Adrian V; Geva, Tal; Powell, Andrew J; Moghari, Mehdi H; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2015 Oct; | 26889498 | |
| Probabilistic Modeling of Imaging, Genetics and Diagnosis. | Batmanghelich, Nematollah K; Dalca, Adrian; Quon, Gerald; Sabuncu, Mert; Golland, Polina | IEEE transactions on medical imaging. | 2016 07; | 26886973 | |
| LANDMARK MATCHING ON THE SPHERE USING DISTANCE FUNCTIONS. | Leporé, Natasha; Leow, Alex; Thompson, Paul | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2006 Apr; | 26877833 | |
| Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. | Mortensen, Jonathan M; Telis, Natalie; Hughey, Jacob J; Fan-Minogue, Hua; Van Auken, Kimberly; Dumontier, Michel; Musen, Mark A | Journal of biomedical informatics. | 2016 Apr; | 26873781 | |
| Multimodal neuroimaging computing: a review of the applications in neuropsychiatric disorders. | Liu, Sidong; Cai, Weidong; Liu, Siqi; Zhang, Fan; Fulham, Michael; Feng, Dagan; Pujol, Sonia; Kikinis, Ron | Brain informatics. | 2015; | 26870629 | |
| Ten Simple Rules for Selecting a Bio-ontology. | Malone, James; Stevens, Robert; Jupp, Simon; Hancocks, Tom; Parkinson, Helen; Brooksbank, Cath | PLoS computational biology. | 2016 Feb; | 26867217 | |
| Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. | Luo, Yuan; Uzuner, Özlem; Szolovits, Peter | Briefings in bioinformatics. | 2017 Jan; | 26851224 | |
| Building a Natural Language Processing Tool to Identify Patients With High Clinical Suspicion for Kawasaki Disease from Emergency Department Notes. | Doan, Son; Maehara, Cleo K; Chaparro, Juan D; Lu, Sisi; Liu, Ruiling; Graham, Amanda; Berry, Erika; Hsu, Chun-Nan; Kanegaye, John T; Lloyd, David D; Ohno-Machado, Lucila; Burns, Jane C; Tremoulet, Adriana H; Pediatric Emergency Medicine Kawasaki Disease Research Group | Academic emergency medicine : official journal of the Society for Academic Emergency Medicine. | 2016 May; | 26826020 | |
| Genes with monoallelic expression contribute disproportionately to genetic diversity in humans. | Savova, Virginia; Chun, Sung; Sohail, Mashaal; McCole, Ruth B; Witwicki, Robert; Gai, Lisa; Lenz, Tobias L; Wu, C-ting; Sunyaev, Shamil R; Gimelbrant, Alexander A | Nature genetics. | 2016 Mar; | 26808112 | |
| Biomechanical model for computing deformations for whole-body image registration: A meshless approach. | Li, Mao; Miller, Karol; Joldes, Grand Roman; Kikinis, Ron; Wittek, Adam | International journal for numerical methods in biomedical engineering. | 2016 12; | 26791945 | |
| REPRODUCIBLE AND SHAREABLE QUANTIFICATIONS OF PATHOGENICITY. | Manrai, Arjun K; Wang, Brice L; Patel, Chirag J; Kohane, Isaac S | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2016; | 26776189 | |
| A Stochastic Approach to Diffeomorphic Point Set Registration with Landmark Constraints. | Kolesov, Ivan; Lee, Jehoon; Sharp, Gregory; Vela, Patricio; Tannenbaum, Allen | IEEE transactions on pattern analysis and machine intelligence. | 2016 Feb; | 26761731 | |
| Generating Purkinje networks in the human heart. | Sahli Costabal, Francisco; Hurtado, Daniel E; Kuhl, Ellen | Journal of biomechanics. | 2016 08 16; | 26748729 | |
| A Biomechanical Model of the Scapulothoracic Joint to Accurately Capture Scapular Kinematics during Shoulder Movements. | Seth, Ajay; Matias, Ricardo; Veloso, António P; Delp, Scott L | PloS one. | 2016; | 26734761 | |
| FORESEE: Fully Outsourced secuRe gEnome Study basEd on homomorphic Encryption. | Zhang, Yuchen; Dai, Wenrui; Jiang, Xiaoqian; Xiong, Hongkai; Wang, Shuang | BMC medical informatics and decision making. | 2015; | 26733391 | |
| Privacy-preserving GWAS analysis on federated genomic datasets. | Constable, Scott D; Tang, Yuzhe; Wang, Shuang; Jiang, Xiaoqian; Chapin, Steve | BMC medical informatics and decision making. | 2015; | 26733045 | |
| Absence of evidence for increase in risk for autism or attention-deficit hyperactivity disorder following antidepressant exposure during pregnancy: a replication study. | Castro, V M; Kong, S W; Clements, C C; Brady, R; Kaimal, A J; Doyle, A E; Robinson, E B; Churchill, S E; Kohane, I S; Perlis, R H | Translational psychiatry. | 2016 Jan 05; | 26731445 | |
| Learning from Data with Heterogeneous Noise using SGD. | Song, Shuang; Chaudhuri, Kamalika; Sarwate, Anand D | JMLR workshop and conference proceedings. | 2015 Feb; | 26705435 | |
| Predictive modeling of risk factors and complications of cataract surgery. | Gaskin, Gregory L; Pershing, Suzann; Cole, Tyler S; Shah, Nigam H | European journal of ophthalmology. | 2016 Jun 10; | 26692059 | |
| Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations. | Araya, Carlos L; Cenik, Can; Reuter, Jason A; Kiss, Gert; Pande, Vijay S; Snyder, Michael P; Greenleaf, William J | Nature genetics. | 2016 Feb; | 117-25 | 26691984 |
| Participation of low-income women in genetic cancer risk assessment and BRCA 1/2 testing: the experience of a safety-net institution. | Komenaka, Ian K; Nodora, Jesse N; Madlensky, Lisa; Winton, Lisa M; Heberer, Meredith A; Schwab, Richard B; Weitzel, Jeffrey N; Martinez, Maria Elena | Journal of community genetics. | 2016 Jul; | 26690931 | |
| Entropy-based particle correspondence for shape populations. | Oguz, Ipek; Cates, Josh; Datar, Manasi; Paniagua, Beatriz; Fletcher, Thomas; Vachet, Clement; Styner, Martin; Whitaker, Ross | International journal of computer assisted radiology and surgery. | 2016 Jul; | 26646417 | |
| Androgen Deprivation Therapy and Future Alzheimer's Disease Risk. | Nead, Kevin T; Gaskin, Greg; Chester, Cariad; Swisher-McClure, Samuel; Dudley, Joel T; Leeper, Nicholas J; Shah, Nigam H | Journal of clinical oncology : official journal of the American Society of Clinical Oncology. | 2016 Feb 20; | 26644522 | |
| Comparing high-dimensional confounder control methods for rapid cohort studies from electronic health records. | Low, Yen Sia; Gallego, Blanca; Shah, Nigam Haresh | Journal of comparative effectiveness research. | 2016 Mar; | 26634383 | |
| Splicing Express: a software suite for alternative splicing analysis using next-generation sequencing data. | Kroll, Jose E; Kim, Jihoon; Ohno-Machado, Lucila; de Souza, Sandro J | PeerJ. | 2015; | 26618088 | |
| Rapid identification of slow healing wounds. | Jung, Kenneth; Covington, Scott; Sen, Chandan K; Januszyk, Michael; Kirsner, Robert S; Gurtner, Geoffrey C; Shah, Nigam H | Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society. | 2016 Jan; | 26606167 | |
| Using Kepler for Tool Integration in Microarray Analysis Workflows. | Gan, Zhuohui; Stowe, Jennifer C; Altintas, Ilkay; McCulloch, Andrew D; Zambon, Alexander C | Procedia computer science. | 2014; | 26605000 | |
| A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation--With Application to Tumor and Stroke. | Menze, Bjoern H; Van Leemput, Koen; Lashkari, Danial; Riklin-Raviv, Tammy; Geremia, Ezequiel; Alberts, Esther; Gruber, Philipp; Wegener, Susanne; Weber, Marc-Andre; Szekely, Gabor; Ayache, Nicholas; Golland, Polina | IEEE transactions on medical imaging. | 2016 Apr; | 26599702 | |
| Inter- and intra-patient clonal and subclonal heterogeneity of chronic lymphocytic leukaemia: evidences from circulating and lymph nodal compartments. | Del Giudice, Ilaria; Marinelli, Marilisa; Wang, Jiguang; Bonina, Silvia; Messina, Monica; Chiaretti, Sabina; Ilari, Caterina; Cafforio, Luciana; Raponi, Sara; Mauro, Francesca Romana; Di Maio, Valeria; De Propris, Maria Stefania; Nanni, Mauro; Ciardullo, Carmela; Rossi, Davide; Gaidano, Gianluca; Guarini, Anna; Rabadan, Raul; Foà, Robin | British journal of haematology. | 2016 Feb; | 26597680 | |
| Elucidation and Pharmacological Targeting of Novel Molecular Drivers of Follicular Lymphoma Progression. | Bisikirska, Brygida; Bansal, Mukesh; Shen, Yao; Teruya-Feldstein, Julie; Chaganti, Raju; Califano, Andrea | Cancer research. | 2016 Feb 1; | 26589882 | |
| Trends in biomedical informatics: automated topic analysis of JAMIA articles. | Han, Dong; Wang, Shuang; Jiang, Chao; Jiang, Xiaoqian; Kim, Hyeon-Eui; Sun, Jimeng; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 2015 Nov; | 26555018 | |
| VERTIcal Grid lOgistic regression (VERTIGO). | Li, Yong; Jiang, Xiaoqian; Wang, Shuang; Xiong, Hongkai; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 2016 05; | 26554428 | |
| Development and Validation of an Algorithm to Identify Nonalcoholic Fatty Liver Disease in the Electronic Medical Record. | Corey, Kathleen E; Kartoun, Uri; Zheng, Hui; Shaw, Stanley Y | Digestive diseases and sciences. | 2016 Mar; | 26537487 | |
| SPReM: Sparse Projection Regression Model For High-dimensional Linear Regression. | Sun, Qiang; Zhu, Hongtu; Liu, Yufeng; Ibrahim, Joseph G; Alzheimer?;s Disease Neuroimaging Initiative | Journal of the American Statistical Association. | 2015; | 26527844 | |
| Three-dimensional regional displacement after surgical-orthodontic correction of Class III malocclusion. | Koerich, L; Ruellas, A C O; Paniagua, B; Styner, M; Turvey, T; Cevidanes, L H S | Orthodontics & craniofacial research. | 2016 May; | 26521755 | |
| Multilayered temporal modeling for the clinical domain. | Lin, Chen; Dligach, Dmitriy; Miller, Timothy A; Bethard, Steven; Savova, Guergana K | Journal of the American Medical Informatics Association : JAMIA. | 2016 Mar; | 26521301 | |
| Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. | Uzuner, Özlem; Stubbs, Amber | Journal of biomedical informatics. | 2015 Dec; | 26515500 | |
| An Adaptive Difference Distribution-based Coding with Hierarchical Tree Structure for DNA Sequence Compression. | Dai, Wenrui; Xiong, Hongkai; Jiang, Xiaoqian; Ohno-Machado, Lucila | Proceedings / DCC ... Data Compression Conference ; sponsored by IEEE Computer Society Technical Committee on Computer Communications, in cooperation with NASA/CESDIS. Data Compression Conference. | 2013; | 26501129 | |
| Splenium development and early spoken language in human infants. | Swanson, Meghan R; Wolff, Jason J; Elison, Jed T; Gu, Hongbin; Hazlett, Heather C; Botteron, Kelly; Styner, Martin; Paterson, Sarah; Gerig, Guido; Constantino, John; Dager, Stephen; Estes, Annette; Vachet, Clement; Piven, Joseph; IBIS Network | Developmental science. | 2017 Mar; | 26490257 | |
| Implications of non-stationarity on predictive modeling using EHRs. | Jung, Kenneth; Shah, Nigam H | Journal of biomedical informatics. | 2015 Dec; | 26483171 | |
| Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants. | Petryszak, Robert; Keays, Maria; Tang, Y Amy; Fonseca, Nuno A; Barrera, Elisabet; Burdett, Tony; Füllgrabe, Anja; Fuentes, Alfonso Muñoz-Pomer; Jupp, Simon; Koskinen, Satu; Mannion, Oliver; Huerta, Laura; Megy, Karine; Snow, Catherine; Williams, Eleanor; Barzine, Mitra; Hastings, Emma; Weisser, Hendrik; Wright, James; Jaiswal, Pankaj; Huber, Wolfgang; Choudhary, Jyoti; Parkinson, Helen E; Brazma, Alvis | Nucleic acids research. | 2016 Jan 4; | 26481351 | |
| Distinct Viral and Mutational Spectrum of Endemic Burkitt Lymphoma. | Abate, Francesco; Ambrosio, Maria Raffaella; Mundo, Lucia; Laginestra, Maria Antonella; Fuligni, Fabio; Rossi, Maura; Zairis, Sakellarios; Gazaneo, Sara; De Falco, Giulia; Lazzi, Stefano; Bellan, Cristiana; Rocca, Bruno Jim; Amato, Teresa; Marasco, Elena; Etebari, Maryam; Ogwang, Martin; Calbi, Valeria; Ndede, Isaac; Patel, Kirtika; Chumba, David; Piccaluga, Pier Paolo; Pileri, Stefano; Leoncini, Lorenzo; Rabadan, Raul | PLoS pathogens. | 2015 Oct; | 26468873 | |
| Creating a Common Data Model for Comparative Effectiveness with the Observational Medical Outcomes Partnership. | FitzHenry, F; Resnic, F S; Robbins, S L; Denton, J; Nookala, L; Meeker, D; Ohno-Machado, L; Matheny, M E | Applied clinical informatics. | 2015; | 26448797 | |
| Feasibility of Prioritizing Drug-Drug-Event Associations Found in Electronic Health Records. | Banda, Juan M; Callahan, Alison; Winnenburg, Rainer; Strasberg, Howard R; Cami, Aurel; Reis, Ben Y; Vilar, Santiago; Hripcsak, George; Dumontier, Michel; Shah, Nigam Haresh | Drug safety. | 2016 Jan; | 26446143 | |
| HEALER: homomorphic computation of ExAct Logistic rEgRession for secure rare disease variants analysis in GWAS. | Wang, Shuang; Zhang, Yuchen; Dai, Wenrui; Lauter, Kristin; Kim, Miran; Tang, Yuzhe; Xiong, Hongkai; Jiang, Xiaoqian | Bioinformatics (Oxford, England). | 2016 Jan 15; | 26446135 | |
| Open Knee: Open Source Modeling and Simulation in Knee Biomechanics. | Erdemir, Ahmet | The journal of knee surgery | 2016 Feb | 107-16 | 26444849 |
| Structural Neuroimaging Genetics Interactions in Alzheimer's Disease. | Moon, Seok Woo; Dinov, Ivo D; Kim, Jaebum; Zamanyan, Alen; Hobel, Sam; Thompson, Paul M; Toga, Arthur W | Journal of Alzheimer's disease : JAD. | 2015; | 26444770 | |
| Creation of a new longitudinal corpus of clinical narratives. | Kumar, Vishesh; Stubbs, Amber; Shaw, Stanley; Uzuner, Özlem | Journal of biomedical informatics. | 2015 Dec; | 26433122 | |
| Bayesian network analysis of multi-compartmentalized immune responses in a murine model of sepsis and direct lung injury. | Nemzek, Jean A; Hodges, Andrew P; He, Yongqun | BMC research notes. | 2015; | 26423575 | |
| The digital revolution in phenotyping. | Oellrich, Anika; Collier, Nigel; Groza, Tudor; Rebholz-Schuhmann, Dietrich; Shah, Nigam; Bodenreider, Olivier; Boland, Mary Regina; Georgiev, Ivo; Liu, Hongfang; Livingston, Kevin; Luna, Augustin; Mallon, Ann-Marie; Manda, Prashanti; Robinson, Peter N; Rustici, Gabriella; Simon, Michelle; Wang, Liqin; Winnenburg, Rainer; Dumontier, Michel | Briefings in bioinformatics. | 2016 09; | 26420780 | |
| A gene expression resource generated by genome-wide lacZ profiling in the mouse. | Tuck, Elizabeth; Estabel, Jeanne; Oellrich, Anika; Maguire, Anna Karin; Adissu, Hibret A; Souter, Luke; Siragher, Emma; Lillistone, Charlotte; Green, Angela L; Wardle-Jones, Hannah; Carragher, Damian M; Karp, Natasha A; Smedley, Damian; Adams, Niels C; Sa | Disease models & mechanisms. | 2015 Nov; | 1467-78 | 26398943 |
| Predicting Drug Response in Human Prostate Cancer from Preclinical Analysis of In Vivo Mouse Models. | Mitrofanova, Antonina; Aytes, Alvaro; Zou, Min; Shen, Michael M; Abate-Shen, Cory; Califano, Andrea | Cell reports. | 2015 Sep 29; | 2060-71 | 26387954 |
| Recommendations for minimum information for publication of experimental pathology data: MINPEPA guidelines. | Scudamore, Cheryl L; Soilleux, Elizabeth J; Karp, Natasha A; Smith, Ken; Poulsom, Richard; Herrington, C Simon; Day, Michael J; Brayton, Cory F; Bolon, Brad; Whitelaw, Bruce; White, Eric S; Everitt, Jeffrey I; Arends, Mark J | The Journal of pathology. | 2016 Jan; | 26387837 | |
| Identification and Progression of Heart Disease Risk Factors in Diabetic Patients from Longitudinal Electronic Health Records. | Jonnagaddala, Jitendra; Liaw, Siaw-Teng; Ray, Pradeep; Kumar, Manish; Dai, Hong-Jie; Hsu, Chien-Yeh | BioMed research international. | 2015; | 26380290 | |
| Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging. | Zhang, Fan; Song, Yang; Cai, Weidong; Liu, Sidong; Liu, Siqi; Pujol, Sonia; Kikinis, Ron; Xia, Yong; Fulham, Michael J; Feng, David Dagan; Alzheimers Disease Neuroimaging Initiative | IEEE transactions on bio-medical engineering. | 2016 05; | 26372117 | |
| Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies. | Winnenburg, Rainer; Sorbello, Alfred; Ripple, Anna; Harpaz, Rave; Tonning, Joseph; Szarfman, Ana; Francis, Henry; Bodenreider, Olivier | Journal of biomedical informatics. | 2015 Oct; | 26342964 | |
| Investigating Maternal Brain Structure and its Relationship to Substance Use and Motivational Systems. | Rutherford, Helena J V; Gerig, Guido; Gouttard, Sylvain; Potenza, Marc N; Mayes, Linda C | The Yale journal of biology and medicine. | 2015 Sep; | 26339203 | |
| DIGGIT: a Bioconductor package to infer genetic variants driving cellular phenotypes. | Alvarez, Mariano J; Chen, James C; Califano, Andrea | Bioinformatics (Oxford, England). | 2015 Dec 15; | 26338767 | |
| Expanded genetic screening panel for the Ashkenazi Jewish population. | Baskovich, Brett; Hiraki, Susan; Upadhyay, Kinnari; Meyer, Philip; Carmi, Shai; Barzilai, Nir; Darvasi, Ariel; Ozelius, Laurie; Peter, Inga; Cho, Judy H; Atzmon, Gil; Clark, Lorraine; Yu, Jin; Lencz, Todd; Pe'er, Itsik; Ostrer, Harry; Oddoux, Carole | Genetics in medicine : official journal of the American College of Medical Genetics. | 2016 May; | 26334176 | |
| Identification of Nonresponse to Treatment Using Narrative Data in an Electronic Health Record Inflammatory Bowel Disease Cohort. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Cai, Tianxi; Gainer, Vivian S; Shaw, Stanley Y; Savova, Guergana; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Liao, Katherine P; Kohane, Isaac | Inflammatory bowel diseases. | 2016 Jan; | 26332313 | |
| Coronary artery disease risk assessment from unstructured electronic health records using text mining. | Jonnagaddala, Jitendra; Liaw, Siaw-Teng; Ray, Pradeep; Kumar, Manish; Chang, Nai-Wen; Dai, Hong-Jie | Journal of biomedical informatics | 2015 Dec | S203-S210 | 26319542 |
| Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus. | Stubbs, Amber; Uzuner, Özlem | Journal of biomedical informatics. | 2015 Dec; | 26319540 | |
| Development of A Physical Windkessel Module to Re-Create In-Vivo Vascular Flow Impedance for In-Vitro Experiments. | Kung, Ethan O; Taylor, Charles A | Cardiovascular engineering and technology. | 2011 Mar; | 26316899 | |
| CRFs based de-identification of medical records. | He, Bin; Guan, Yi; Cheng, Jianyi; Cen, Keting; Hua, Wenlan | Journal of biomedical informatics | 2015 Dec | S39-S46 | 26315662 |
| Galectin-3 is a marker of myocardial and vascular fibrosis in Kawasaki disease patients with giant aneurysms. | Numano, Fujito; Shimizu, Chisato; Jimenez-Fernandez, Susan; Vejar, Matthew; Oharaseki, Toshiaki; Takahashi, Kei; Salgado, Andrea; Tremoulet, Adriana H; Gordon, John B; Burns, Jane C; Daniels, Lori B | International journal of cardiology. | 2015 Dec 15; | 26313861 | |
| Ranking Medical Subject Headings using a factor graph model. | Wei, Wei; Demner-Fushman, Dina; Wang, Shuang; Jiang, Xiaoqian; Ohno-Machado, Lucila | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2015; | 26306236 | |
| Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts. | Liao, Katherine P; Ananthakrishnan, Ashwin N; Kumar, Vishesh; Xia, Zongqi; Cagan, Andrew; Gainer, Vivian S; Goryachev, Sergey; Chen, Pei; Savova, Guergana K; Agniel, Denis; Churchill, Susanne; Lee, Jaeyoung; Murphy, Shawn N; Plenge, Robert M; Szolovits, Peter; Kohane, Isaac; Shaw, Stanley Y; Karlson, Elizabeth W; Cai, Tianxi | PloS one. | 2015; | 26301417 | |
| Analyzing Information Seeking and Drug-Safety Alert Response by Health Care Professionals as New Methods for Surveillance. | Callahan, Alison; Pernek, Igor; Stiglic, Gregor; Leskovec, Jure; Strasberg, Howard R; Shah, Nigam Haresh | Journal of medical Internet research. | 2015; | 26293444 | |
| Abnormal white matter connections between medial frontal regions predict symptoms in patients with first episode schizophrenia. | Ohtani, Toshiyuki; Bouix, Sylvain; Lyall, Amanda E; Hosokawa, Taiga; Saito, Yukiko; Melonakos, Eric; Westin, Carl-Fredrik; Seidman, Larry J; Goldstein, Jill; Mesholam-Gately, Raquelle; Petryshen, Tracey; Wojcik, Joanne; Kubicki, Marek | Cortex; a journal devoted to the study of the nervous system and behavior. | 2015 Oct; | 26277547 | |
| Context Sensitive Modeling of Cancer Drug Sensitivity. | Chen, Bo-Juen; Litvin, Oren; Ungar, Lyle; Pe'er, Dana | PloS one. | 2015; | 26274927 | |
| Building Force Fields: An Automatic, Systematic, and Reproducible Approach. | Wang, Lee-Ping; Martinez, Todd J; Pande, Vijay S | The journal of physical chemistry letters | 2014 Jun 05 | 26273869 | |
| iDECIDE: A Mobile Application for Insulin Dosing Using an Evidence Based Equation to Account for Patient Preferences. | Lloyd, Buffy; Groat, Danielle; Cook, Curtiss B; Kaufman, David; Grando, Adela | Studies in health technology and informatics. | 2015; | 26262017 | |
| The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery. | Pujol, Sonia; Wells, William; Pierpaoli, Carlo; Brun, Caroline; Gee, James; Cheng, Guang; Vemuri, Baba; Commowick, Olivier; Prima, Sylvain; Stamm, Aymeric; Goubran, Maged; Khan, Ali; Peters, Terry; Neher, Peter; Maier-Hein, Klaus H; Shi, Yundi; Tristan-Vega, Antonio; Veni, Gopalkrishna; Whitaker, Ross; Styner, Martin; Westin, Carl-Fredrik; Gouttard, Sylvain; Norton, Isaiah; Chauvin, Laurent; Mamata, Hatsuho; Gerig, Guido; Nabavi, Arya; Golby, Alexandra; Kikinis, Ron | Journal of neuroimaging : official journal of the American Society of Neuroimaging. | 2015 Nov-Dec; | 26259925 | |
| Sampling from Determinantal Point Processes for Scalable Manifold Learning. | Wachinger, Christian; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference. | 2015 Jul; | 687-698 | 26257500 |
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| Optimizing Locomotion Controllers Using Biologically-Based Actuators and Objectives. | Wang, Jack M; Hamner, Samuel R; Delp, Scott L; Koltun, Vladlen | ACM transactions on graphics. | 2012 Jul; | 26251560 | |
| Analysis of the volumetric relationship among human ocular, orbital and fronto-occipital cortical morphology. | Masters, Michael; Bruner, Emiliano; Queer, Sarah; Traynor, Sarah; Senjem, Jess | Journal of anatomy. | 2015 Oct; | 26250048 | |
| Common Genetic Variants Influence Circulating Vitamin D Levels in Inflammatory Bowel Diseases. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Cai, Tianxi; Gainer, Vivian S; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine P; Xavier, Ramnik J | Inflammatory bowel diseases. | 2015 Nov; | 26241000 | |
| Novel data-mining approach identifies biomarkers for diagnosis of Kawasaki disease. | Tremoulet, Adriana H; Dutkowski, Janusz; Sato, Yuichiro; Kanegaye, John T; Ling, Xuefeng B; Burns, Jane C | Pediatric research. | 2015 Nov; | 26237629 | |
| Depressive symptoms related to low fractional anisotropy of white matter underlying the right ventral anterior cingulate in older adults with atherosclerotic vascular disease. | Bijanki, Kelly R; Matsui, Joy T; Mayberg, Helen S; Magnotta, Vincent A; Arndt, Stephan; Johnson, Hans J; Nopoulos, Peg; Paradiso, Sergio; McCormick, Laurie M; Fiedorowicz, Jess G; Epping, Eric A; Moser, David J | Frontiers in human neuroscience. | 2015; | 26236221 | |
| Preliminary analysis using multi-atlas labeling algorithms for tracing longitudinal change. | Kim, Regina E Y; Lourens, Spencer; Long, Jeffrey D; Paulsen, Jane S; Johnson, Hans J | Frontiers in neuroscience. | 2015; | 26236182 | |
| Risk Classification with an Adaptive Naive Bayes Kernel Machine Model. | Minnier, Jessica; Yuan, Ming; Liu, Jun S; Cai, Tianxi | Journal of the American Statistical Association. | 2015 Apr 22; | 393-404 | 26236061 |
| A method for systematic discovery of adverse drug events from clinical notes. | Wang, Guan; Jung, Kenneth; Winnenburg, Rainer; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA. | 2015 Nov; | 26232442 | |
| Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1. | Stubbs, Amber; Kotfila, Christopher; Uzuner, Özlem | Journal of biomedical informatics. | 2015 Dec; | 26225918 | |
| Sampling from Determinantal Point Processes for Scalable Manifold Learning. | Wachinger, Christian; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference. | 2015; | 687-98 | 26221713 |
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| Generative Method to Discover Genetically Driven Image Biomarkers. | Batmanghelich, Nematollah K; Saeedi, Ardavan; Cho, Michael; Estepar, Raul San Jose; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference. | 2015; | 30-42 | 26221665 |
| Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2. | Stubbs, Amber; Kotfila, Christopher; Xu, Hua; Uzuner, Özlem | Journal of biomedical informatics. | 2015 Dec; | 26210362 | |
| Ease of adoption of clinical natural language processing software: An evaluation of five systems. | Zheng, Kai; Vydiswaran, V G Vinod; Liu, Yang; Wang, Yue; Stubbs, Amber; Uzuner, Özlem; Gururaj, Anupama E; Bayer, Samuel; Aberdeen, John; Rumshisky, Anna; Pakhomov, Serguei; Liu, Hongfang; Xu, Hua | Journal of biomedical informatics. | 2015 Dec; | 26210361 | |
| Assigning and visualizing germline genes in antibody repertoires. | Frost, Simon D W; Murrell, Ben; Hossain, A S Md Mukarram; Silverman, Gregg J; Pond, Sergei L Kosakovsky | Philosophical transactions of the Royal Society of London. Series B, Biological sciences. | 2015 Sep 5; | 26194754 | |
| Elucidating Compound Mechanism of Action by Network Perturbation Analysis. | Woo, Jung Hoon; Shimoni, Yishai; Yang, Wan Seok; Subramaniam, Prem; Iyer, Archana; Nicoletti, Paola; Rodríguez Martínez, María; López, Gonzalo; Mattioli, Michela; Realubit, Ronald; Karan, Charles; Stockwell, Brent R; Bansal, Mukesh; Califano, Andrea | Cell. | 2015 Jul 16; | 441-51 | 26186195 |
| Bayesian Case-deletion Model Complexity and Information Criterion. | Zhu, Hongtu; Ibrahim, Joseph G; Chen, Qingxia | Statistics and its interface. | 2014 Oct 01; | 26180578 | |
| Prefrontal cortex white matter tracts in prodromal Huntington disease. | Matsui, Joy T; Vaidya, Jatin G; Wassermann, Demian; Kim, Regina Eunyoung; Magnotta, Vincent A; Johnson, Hans J; Paulsen, Jane S; PREDICT-HD Investigators and Coordinators of the Huntington Study Group | Human brain mapping. | 2015 Oct; | 26179962 | |
| DPSynthesizer: Differentially Private Data Synthesizer for Privacy Preserving Data Sharing. | Li, Haoran; Xiong, Li; Zhang, Lifan; Jiang, Xiaoqian | Proceedings of the VLDB Endowment International Conference on Very Large Data Bases. | 2014 Aug; | 1677-1680 | 26167358 |
| Automated generation of directed graphs from vascular segmentations. | Chapman, Brian E; Berty, Holly P; Schulthies, Stuart L | Journal of biomedical informatics. | 2015 Aug; | 395-405 | 26165778 |
| WebDISCO: a web service for distributed cox model learning without patient-level data sharing. | Lu, Chia-Lun; Wang, Shuang; Ji, Zhanglong; Wu, Yuan; Xiong, Li; Jiang, Xiaoqian; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 2015 Nov; | 26159465 | |
| United polarizable multipole water model for molecular mechanics simulation. | Qi, Rui; Wang, Lee-Ping; Wang, Qiantao; Pande, Vijay S; Ren, Pengyu | The Journal of chemical physics. | 2015 Jul 7; | 26156485 | |
| PRECISE:PRivacy-prEserving Cloud-assisted quality Improvement Service in hEalthcare. | Chen, Feng; Wang, Shuang; Mohammed, Noman; Cheng, Samuel; Jiang, Xiaoqian | IEEE International Conference on Systems Biology : [proceedings]. IEEE International Conference on Systems Biology. | 2014 Oct; | 176-183 | 26146645 |
| OpenMM: A Hardware Independent Framework for Molecular Simulations. | Eastman, Peter; Pande, Vijay S | Computing in science & engineering. | 2015 Jul 1; | 34-39 | 26146490 |
| The Regulatory Machinery of Neurodegeneration in In??Vitro Models of Amyotrophic Lateral Sclerosis. | Ikiz, Burcin; Alvarez, Mariano J; Re, Diane B; Le Verche, Virginia; Politi, Kristin; Lotti, Francesco; Phani, Sudarshan; Pradhan, Radhika; Yu, Changhao; Croft, Gist F; Jacquier, Arnaud; Henderson, Christopher E; Califano, Andrea; Przedborski, Serge | Cell reports. | 2015 Jul 14; | 335-45 | 26146077 |
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| A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research. | Meeker, Daniella; Jiang, Xiaoqian; Matheny, Michael E; Farcas, Claudiu; D'Arcy, Michel; Pearlman, Laura; Nookala, Lavanya; Day, Michele E; Kim, Katherine K; Kim, Hyeoneui; Boxwala, Aziz; El-Kareh, Robert; Kuo, Grace M; Resnic, Frederic S; Kesselman, Carl; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 2015 Nov; | 26142423 | |
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| Relating Essential Proteins to Drug Side-Effects Using Canonical Component Analysis: A Structure-Based Approach. | Liu, Tianyun; Altman, Russ B | Journal of chemical information and modeling. | 2015 Jul 27; | 26121262 | |
| Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies. | Lyu, Ilwoo; Kim, Sun H; Seong, Joon-Kyung; Yoo, Sang W; Evans, Alan; Shi, Yundi; Sanchez, Mar; Niethammer, Marc; Styner, Martin A | Frontiers in neuroscience. | 2015; | 26113807 | |
| Towards measuring neuroimage misalignment. | Garlapati, Revanth Reddy; Mostayed, Ahmed; Joldes, Grand Roman; Wittek, Adam; Doyle, Barry; Miller, Karol | Computers in biology and medicine. | 2015 Sep; | 26112607 | |
| ABC transporters and the proteasome complex are implicated in susceptibility to Stevens-Johnson syndrome and toxic epidermal necrolysis across multiple drugs. | Nicoletti, Paola; Bansal, Mukesh; Lefebvre, Celine; Guarnieri, Paolo; Shen, Yufeng; Pe'er, Itsik; Califano, Andrea; Floratos, Aris | PloS one. | 2015; | e0131038 | 26110827 |
| Attentional Control and Intelligence: MRI Orbital Frontal Gray Matter and Neuropsychological Correlates. | Nestor, Paul G; Nakamura, Motoaki; Niznikiewicz, Margaret; Levitt, James J; Newell, Dominick T; Shenton, Martha E; McCarley, Robert W | Behavioural neurology. | 2015; | 354186 | 26101457 |
| The immunomodulatory effects of intravenous immunoglobulin therapy in Kawasaki disease. | Burns, Jane C; Franco, Alessandra | Expert review of clinical immunology. | 2015; | 819-25 | 26099344 |
| Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis. | Levine, Jacob H; Simonds, Erin F; Bendall, Sean C; Davis, Kara L; Amir, El-ad D; Tadmor, Michelle D; Litvin, Oren; Fienberg, Harris G; Jager, Astraea; Zunder, Eli R; Finck, Rachel; Gedman, Amanda L; Radtke, Ina; Downing, James R; Pe'er, Dana; Nolan, Garry | Cell. | 2015 Jul 2; | 184-97 | 26095251 |
| Robust Atlas-Based Segmentation of Highly Variable Anatomy: Left Atrium Segmentation. | Depa, Michal; Sabuncu, Mert R; Holmvang, Godtfred; Nezafat, Reza; Schmidt, Ehud J; Golland, Polina | Statistical atlases and computational models of the heart : First International Workshop, STACOM 2010, and cardiac electrophysical simulation challenge, CESC 2010, held in conjunction with MICCAI 2010, Beijing, China, September 20, 2010.... | 2010; | 85-94 | 26090522 |
| Automatic Tissue Segmentation of Neonate Brain MR Images with Subject-specific Atlases. | Cherel, Marie; Budin, Francois; Prastawa, Marcel; Gerig, Guido; Lee, Kevin; Buss, Claudia; Lyall, Amanda; Consing, Kirsten Zaldarriaga; Styner, Martin | Proceedings of SPIE--the International Society for Optical Engineering. | 2015 Feb 21; | 26089584 | |
| Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation. | Yu, Peng; Han, Xiao; Ségonne, Florent; Pienaar, Rudolph; Buckner, Randy L; Golland, Polina; Grant, P Ellen; Fischl, Bruce | Conference on Computer Vision and Pattern Recognition Workshops IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops. | 2006 Jun; | 26082947 | |
| What Data to Co-register for Computing Atlases. | Yeo, B T Thomas; Sabuncu, Mert; Mohlberg, Hartmut; Amunts, Katrin; Zilles, Karl; Golland, Polina; Fischl, Bruce | Proceedings / IEEE International Conference on Computer Vision. IEEE International Conference on Computer Vision. | 2007 Oct; | 26082678 | |
| Cortical Folding Development Study based on Over-Complete Spherical Wavelets. | Yu, Peng; Yeo, Boon Thye Thomas; Grant, P Ellen; Fischl, Bruce; Golland, Polina | Proceedings / IEEE International Conference on Computer Vision. IEEE International Conference on Computer Vision. | 2007 Oct; | 26082677 | |
| Spatial Patterns and Functional Profiles for Discovering Structure in fMRI Data. | Golland, Polina; Lashkari, Danial; Venkataraman, Archana | Conference record / Asilomar Conference on Signals, Systems & Computers. Asilomar Conference on Signals, Systems & Computers. | 2008 Oct; | 1402-1409 | 26082607 |
| A network of molecular switches controls the activation of the two-component response regulator NtrC. | Vanatta, Dan K; Shukla, Diwakar; Lawrenz, Morgan; Pande, Vijay S | Nature communications. | 2015; | 7283 | 26073186 |
| Contour-Driven Atlas-Based Segmentation. | Wachinger, Christian; Fritscher, Karl; Sharp, Greg; Golland, Polina | IEEE transactions on medical imaging. | 2015 Dec; | 26068202 | |
| Proton Pump Inhibitor Usage and the Risk of Myocardial Infarction in the General Population. | Shah, Nigam H; LePendu, Paea; Bauer-Mehren, Anna; Ghebremariam, Yohannes T; Iyer, Srinivasan V; Marcus, Jake; Nead, Kevin T; Cooke, John P; Leeper, Nicholas J | PloS one. | 2015; | 26061035 | |
| Direct ChIP-Seq significance analysis improves target prediction. | Bansal, Mukesh; Mendiratta, Geetu; Anand, Santosh; Kushwaha, Ritu; Kim, Ryan; Kustagi, Manju; Iyer, Archana; Chaganti, Raju S K; Califano, Andrea; Sumazin, Pavel | BMC genomics. | 2015; | S4 | 26040656 |
| A diffusion tensor MRI atlas of the postmortem rhesus macaque brain. | Calabrese, Evan; Badea, Alexandra; Coe, Christopher L; Lubach, Gabriele R; Shi, Yundi; Styner, Martin A; Johnson, G Allan | NeuroImage. | 2015 Aug 15; | 408-16 | 26037056 |
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| EXPLORING FUNCTIONAL CONNECTIVITY IN FMRI VIA CLUSTERING. | Venkataraman, Archana; Van Dijk, Koene R A; Buckner, Randy L; Golland, Polina | Proceedings of the ... IEEE International Conference on Acoustics, Speech, and Signal Processing / sponsored by the Institute of Electrical and Electronics Engineers Signal Processing Society. ICASSP (Conference). | 2009 Apr; | 441-444 | 26028993 |
| Shape index distribution based local surface complexity applied to the human cortex. | Kim, Sun Hyung; Fonov, Vladimir; Collins, D Louis; Gerig, Guido; IBIS Network; Styner, Martin A | Proceedings of SPIE--the International Society for Optical Engineering. | 2015; | 26028803 | |
| LOGISMOS-B for Primates: Primate Cortical Surface Reconstruction and Thickness Measurement. | Oguz, Ipek; Styner, Martin; Sanchez, Mar; Shi, Yundi; Sonka, Milan | Proceedings of SPIE--the International Society for Optical Engineering. | 2015; | 26028802 | |
| Automatic Sulcal Curve Extraction on the Human Cortical Surface. | Lyu, Ilwoo; Kim, Sun Hyung; Styner, Martin | Proceedings of SPIE--the International Society for Optical Engineering. | 2015; | 26028801 | |
| Annotating risk factors for heart disease in clinical narratives for diabetic patients. | Stubbs, Amber; Uzuner, Ozlem | Journal of biomedical informatics. | 2015 May 21; | 26004790 | |
| Human Cardiac Function Simulator for the Optimal Design of a Novel Annuloplasty Ring with a Sub-valvular Element for Correction of Ischemic Mitral Regurgitation. | Baillargeon, Brian; Costa, Ivan; Leach, Joseph R; Lee, Lik Chuan; Genet, Martin; Toutain, Arnaud; Wenk, Jonathan F; Rausch, Manuel K; Rebelo, Nuno; Acevedo-Bolton, Gabriel; Kuhl, Ellen; Navia, Jose L; Guccione, Julius M | Cardiovascular engineering and technology | 2015 Jun | 105-16 | 25984248 |
| Empirical Transition Probability Indexing Sparse-Coding Belief Propagation (ETPI-SCoBeP) Genome Sequence Alignment. | Roozgard, Aminmohammad; Barzigar, Nafise; Wang, Shuang; Jiang, Xiaoqian; Cheng, Samuel | Cancer informatics. | 2014; | 25983537 | |
| Building the graph of medicine from millions of clinical narratives. | Finlayson, Samuel G; LePendu, Paea; Shah, Nigam H | Scientific data. | 2014; | 140032 | 25977789 |
| Federated queries of clinical data repositories: Scaling to a national network. | Weber, Griffin M | Journal of biomedical informatics. | 2015 Jun; | 231-6 | 25957825 |
| RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity. | Pefanis, Evangelos; Wang, Jiguang; Rothschild, Gerson; Lim, Junghyun; Kazadi, David; Sun, Jianbo; Federation, Alexander; Chao, Jaime; Elliott, Oliver; Liu, Zhi-Ping; Economides, Aris N; Bradner, James E; Rabadan, Raul; Basu, Uttiya | Cell. | 2015 May 7; | 774-89 | 25957685 |
| Semi-Supervised Learning to Identify UMLS Semantic Relations. | Luo, Yuan; Uzuner, Ozlem | AMIA Joint Summits on Translational Science proceedings AMIA Summit on Translational Science. | 2014; | 67-75 | 25954580 |
| Sharing my health data: a survey of data sharing preferences of healthy individuals. | Bell, Elizabeth A; Ohno-Machado, Lucila; Grando, M Adela | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2014; | 1699-708 | 25954442 |
| An empirically derived taxonomy of errors in SNOMED CT. | Mortensen, Jonathan M; Musen, Mark A; Noy, Natalya F | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2014; | 899-906 | 25954397 |
| Trends in publication of nursing informatics research. | Kim, Hyeoneui; Ohno-Machado, Lucila; Oh, Janet; Jiang, Xiaoqian | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2014; | 805-14 | 25954387 |
| Elucidating Ligand-Modulated Conformational Landscape of GPCRs Using Cloud-Computing Approaches. | Shukla, Diwakar; Lawrenz, Morgan; Pande, Vijay S | Methods in enzymology. | 2015; | 551-72 | 25950981 |
| An information theoretic method to identify combinations of genomic alterations that promote glioblastoma. | Melamed, Rachel D; Wang, Jiguang; Iavarone, Antonio; Rabadan, Raul | Journal of molecular cell biology. | 2015 Jun; | 203-13 | 25941339 |
| Structural Brain Changes in Early-Onset Alzheimer's Disease Subjects Using the LONI Pipeline Environment. | Moon, Seok Woo; Dinov, Ivo D; Hobel, Sam; Zamanyan, Alen; Choi, Young Chil; Shi, Ran; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging Initiative | Journal of neuroimaging : official journal of the American Society of Neuroimaging. | 2015 Sep; | 728-37 | 25940587 |
| Altered corpus callosum morphology associated with autism over the first 2 years of life. | Wolff, Jason J; Gerig, Guido; Lewis, John D; Soda, Takahiro; Styner, Martin A; Vachet, Clement; Botteron, Kelly N; Elison, Jed T; Dager, Stephen R; Estes, Annette M; Hazlett, Heather C; Schultz, Robert T; Zwaigenbaum, Lonnie; Piven, Joseph; IBIS Network | Brain : a journal of neurology. | 2015 Jul; | 2046-58 | 25937563 |
| Bacterial division. Mechanical crack propagation drives millisecond daughter cell separation in Staphylococcus aureus. | Zhou, Xiaoxue; Halladin, David K; Rojas, Enrique R; Koslover, Elena F; Lee, Timothy K; Huang, Kerwyn Casey; Theriot, Julie A | Science (New York, N.Y.). | 2015 May 1; | 574-8 | 25931560 |
| Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources. | Yu, Sheng; Liao, Katherine P; Shaw, Stanley Y; Gainer, Vivian S; Churchill, Susanne E; Szolovits, Peter; Murphy, Shawn N; Kohane, Isaac S; Cai, Tianxi | Journal of the American Medical Informatics Association : JAMIA. | 2015 Sep; | 25929596 | |
| Human Endogenous Retrovirus Type K (HERV-K) Particles Package and Transmit HERV-K-Related Sequences. | Contreras-Galindo, Rafael; Kaplan, Mark H; Dube, Derek; Gonzalez-Hernandez, Marta J; Chan, Susana; Meng, Fan; Dai, Manhong; Omenn, Gilbert S; Gitlin, Scott D; Markovitz, David M | Journal of virology. | 2015 Jul; | 7187-201 | 25926654 |
| Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes. | Melamed, Rachel D; Emmett, Kevin J; Madubata, Chioma; Rzhetsky, Andrey; Rabadan, Raul | Nature communications. | 2015; | 7033 | 25926297 |
| The association between lower educational attainment and depression owing to shared genetic effects? Results in ~25,000 subjects. | Peyrot, W J; Lee, S H; Milaneschi, Y; Abdellaoui, A; Byrne, E M; Esko, T; de Geus, E J C; Hemani, G; Hottenga, J J; Kloiber, S; Levinson, D F; Lucae, S; Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium (Corporate Collaborator); M | Molecular psychiatry. | 2015 Jun; | 735-43 | 25917368 |
| Development of phenotype algorithms using electronic medical records and incorporating natural language processing. | Liao, Katherine P; Cai, Tianxi; Savova, Guergana K; Murphy, Shawn N; Karlson, Elizabeth W; Ananthakrishnan, Ashwin N; Gainer, Vivian S; Shaw, Stanley Y; Xia, Zongqi; Szolovits, Peter; Churchill, Susanne; Kohane, Isaac | BMJ (Clinical research ed.). | 2015; | h1885 | 25911572 |
| WHAT IS A MOMENT ARM? CALCULATING MUSCLE EFFECTIVENESS IN BIOMECHANICAL MODELS USING GENERALIZED COORDINATES. | Sherman, Michael A; Seth, Ajay; Delp, Scott L | Proceedings of the ... ASME Design Engineering Technical Conferences. ASME Design Engineering Technical Conferences. | 2013 Aug; | 25905111 | |
| Statistical inference for nanopore sequencing with a biased random walk model. | Emmett, Kevin J; Rosenstein, Jacob K; van de Meent, Jan-Willem; Shepard, Ken L; Wiggins, Chris H | Biophysical journal. | 2015 Apr 21; | 1852-5 | 25902425 |
| Comparison of Twin and Extended Pedigree Designs for Obtaining Heritability Estimates. | Docherty, Anna R; Kremen, William S; Panizzon, Matthew S; Prom-Wormley, Elizabeth C; Franz, Carol E; Lyons, Michael J; Eaves, Lindon J; Neale, Michael C | Behavior genetics | 2015 Jul | 461-6 | 25894926 |
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| BAP1 mutation is a frequent somatic event in peritoneal malignant mesothelioma. | Alakus, Hakan; Yost, Shawn E; Woo, Brian; French, Randall; Lin, Grace Y; Jepsen, Kristen; Frazer, Kelly A; Lowy, Andrew M; Harismendy, Olivier | Journal of translational medicine. | 2015; | 122 | 25889843 |
| Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks. | Repunte-Canonigo, Vez; Shin, William; Vendruscolo, Leandro F; Lefebvre, Celine; van der Stap, Lena; Kawamura, Tomoya; Schlosburg, Joel E; Alvarez, Mariano; Koob, George F; Califano, Andrea; Sanna, Pietro Paolo | Genome biology. | 2015; | 25886852 | |
| Grid multi-category response logistic models. | Wu, Yuan; Jiang, Xiaoqian; Wang, Shuang; Jiang, Wenchao; Li, Pinghao; Ohno-Machado, Lucila | BMC medical informatics and decision making. | 2015; | 10 | 25886151 |
| Convergent mutations and kinase fusions lead to oncogenic STAT3 activation in anaplastic large cell lymphoma. | Crescenzo, Ramona; Abate, Francesco; Lasorsa, Elena; Tabbo', Fabrizio; Gaudiano, Marcello; Chiesa, Nicoletta; Di Giacomo, Filomena; Spaccarotella, Elisa; Barbarossa, Luigi; Ercole, Elisabetta; Todaro, Maria; Boi, Michela; Acquaviva, Andrea; Ficarra, Elisa | Cancer cell. | 2015 Apr 13; | 516-32 | 25873174 |
| Normalization of relative and incomplete temporal expressions in clinical narratives. | Sun, Weiyi; Rumshisky, Anna; Uzuner, Ozlem | Journal of the American Medical Informatics Association : JAMIA. | 2015 Apr 12; | 25868462 | |
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| Diabetes and the risk of infections with immunomodulator therapy in inflammatory bowel diseases. | Ananthakrishnan, A N; Cagan, A; Cai, T; Gainer, V S; Shaw, S Y; Churchill, S; Karlson, E W; Murphy, S N; Kohane, I; Liao, K P | Alimentary pharmacology & therapeutics. | 2015 Jun; | 1141-8 | 25864945 |
| Subgraph augmented non-negative tensor factorization (SANTF) for modeling clinical narrative text. | Luo, Yuan; Xin, Yu; Hochberg, Ephraim; Joshi, Rohit; Uzuner, Ozlem; Szolovits, Peter | Journal of the American Medical Informatics Association : JAMIA. | 2015 Sep; | 25862765 | |
| Neuroinformatics and the The Insight ToolKit. | Avants, Brian B; Johnson, Hans J; Tustison, Nicholas J | Frontiers in neuroinformatics. | 2015; | 25859213 | |
| Role of TGF-? Signaling in Remodeling of Noncoronary Artery Aneurysms in Kawasaki Disease. | Lee, Aaron M; Shimizu, Chisato; Oharaseki, Toshiaki; Takahashi, Kei; Daniels, Lori B; Kahn, Andrew; Adamson, Robert; Dembitsky, Walter; Gordon, John B; Burns, Jane C | Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society. | 2015 Jul-Aug; | 25856633 | |
| Mission and Sustainability of Informatics for Integrating Biology and the Bedside (i2b2). | Murphy, Shawn; Wilcox, Adam | EGEMS (Washington, DC). | 2014; | 25848608 | |
| Development of a web service for analysis in a distributed network. | Jiang, Xiaoqian; Wu, Yuan; Marsolo, Keith; Ohno-Machado, Lucila | EGEMS (Washington, DC). | 2014; | 25848586 | |
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| Fine specificities of natural regulatory T cells after IVIG therapy in patients with Kawasaki disease. | Burns, Jane C; Touma, Ranim; Song, Yali; Padilla, Robert L; Tremoulet, Adriana H; Sidney, John; Sette, Alessandro; Franco, Alessandra | Autoimmunity. | 2015 May; | 181-8 | 25822882 |
| Patient-Specific Airway Wall Remodeling in Chronic Lung Disease. | Eskandari, Mona; Kuschner, Ware G; Kuhl, Ellen | Annals of biomedical engineering. | 2015 Oct; | 25821112 | |
| T1? imaging in premanifest Huntington disease reveals changes associated with disease progression. | Wassef, Shafik N; Wemmie, John; Johnson, Casey P; Johnson, Hans; Paulsen, Jane S; Long, Jeffrey D; Magnotta, Vincent A | Movement disorders : official journal of the Movement Disorder Society. | 2015 Jul; | 25820773 | |
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| Alternative polyadenylation allows differential negative feedback of human miRNA miR-579 on its host gene ZFR. | Hinske, Ludwig Christian; Galante, Pedro A F; Limbeck, Elisabeth; Möhnle, Patrick; Parmigiani, Raphael B; Ohno-Machado, Lucila; Camargo, Anamaria A; Kreth, Simone | PloS one. | 2015; | e0121507 | 25799583 |
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| Assembly and interrogation of Alzheimer's disease genetic networks reveal novel regulators of progression. | Aubry, Soline; Shin, William; Crary, John F; Lefort, Roger; Qureshi, Yasir H; Lefebvre, Celine; Califano, Andrea; Shelanski, Michael L | PloS one. | 2015; | e0120352 | 25781952 |
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| Transient pairing of homologous Oct4 alleles accompanies the onset of embryonic stem cell differentiation. | Hogan, Megan S; Parfitt, David-Emlyn; Zepeda-Mendoza, Cinthya J; Shen, Michael M; Spector, David L | Cell stem cell. | 2015 Mar 5; | 275-88 | 25748933 |
| Metabolic modeling of muscle metabolism identifies key reactions linked to insulin resistance phenotypes. | Nogiec, Christopher; Burkart, Alison; Dreyfuss, Jonathan M; Lerin, Carles; Kasif, Simon; Patti, Mary-Elizabeth | Molecular metabolism | 2015 Mar | 151-63 | 25737951 |
| High-resolution Genomic Surveillance of 2014 Ebolavirus Using Shared Subclonal Variants. | Emmett, Kevin J; Lee, Albert; Khiabanian, Hossein; Rabadan, Raul | PLoS currents. | 2015 Feb 09; | 25737802 | |
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| Gene-wide identification of episodic selection. | Murrell, Ben; Weaver, Steven; Smith, Martin D; Wertheim, Joel O; Murrell, Sasha; Aylward, Anthony; Eren, Kemal; Pollner, Tristan; Martin, Darren P; Smith, Davey M; Scheffler, Konrad; Kosakovsky Pond, Sergei L | Molecular biology and evolution. | 2015 May; | 1365-71 | 25701167 |
| Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection. | Smith, Martin D; Wertheim, Joel O; Weaver, Steven; Murrell, Ben; Scheffler, Konrad; Kosakovsky Pond, Sergei L | Molecular biology and evolution. | 2015 May; | 1342-53 | 25697341 |
| Interferon ?/? Enhances the Cytotoxic Response of MEK Inhibition in Melanoma. | Litvin, Oren; Schwartz, Sarit; Wan, Zhenmao; Schild, Tanya; Rocco, Mark; Oh, Nul Loren; Chen, Bo-Juen; Goddard, Noel; Pratilas, Christine; Pe'er, Dana | Molecular cell. | 2015 Mar 5; | 784-96 | 25684207 |
| Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model. | Laury, Marie L; Wang, Lee-Ping; Pande, Vijay S; Head-Gordon, Teresa; Ponder, Jay W | The journal of physical chemistry. B. | 2015 Jul 23; | 25683601 | |
| NONPARAMETRIC INFERENCE PROCEDURE FOR PERCENTILES OF THE RANDOM EFFECTS DISTRIBUTION IN META-ANALYSIS. | Wang, Rui; Tian, Lu; Cai, Tianxi; Wei, L J | The annals of applied statistics. | 2010; | 25678939 | |
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| Gene interactions and structural brain change in early-onset Alzheimer's disease subjects using the pipeline environment. | Moon, Seok Woo; Dinov, Ivo D; Zamanyan, Alen; Shi, Ran; Genco, Alex; Hobel, Sam; Thompson, Paul M; Toga, Arthur W; Alzheimer's Disease Neuroimaging Initiative (ADNI) | Psychiatry investigation. | 2015 Jan; | 25670955 | |
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| Identification of rare germline copy number variations over-represented in five human cancer types. | Park, Richard W; Kim, Tae-Min; Kasif, Simon; Park, Peter J | Molecular cancer. | 2015; | 25 | 25644941 |
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| A time-indexed reference standard of adverse drug reactions. | Harpaz, Rave; Odgers, David; Gaskin, Greg; DuMouchel, William; Winnenburg, Rainer; Bodenreider, Olivier; Ripple, Anna; Szarfman, Ana; Sorbello, Alfred; Horvitz, Eric; White, Ryen W; Shah, Nigam H | Scientific data. | 2014 11 11; | 25632348 | |
| Comparing 3T and 1.5T MRI for mapping hippocampal atrophy in the Alzheimer's Disease Neuroimaging Initiative. | Chow, N; Hwang, K S; Hurtz, S; Green, A E; Somme, J H; Thompson, P M; Elashoff, D A; Jack, C R; Weiner, M; Apostolova, L G; Alzheimer's Disease Neuroimaging Initiative | AJNR. American journal of neuroradiology. | 2015 Apr; | 653-60 | 25614473 |
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| Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data. | Greenfeld, Max; van de Meent, Jan-Willem; Pavlichin, Dmitri S; Mabuchi, Hideo; Wiggins, Chris H; Gonzalez Jr, Ruben L; Herschlag, Daniel | BMC bioinformatics. | 2015; | 3 | 25591752 |
| Overcome support vector machine diagnosis overfitting. | Han, Henry; Jiang, Xiaoqian | Cancer informatics. | 2014; | 25574125 | |
| Genome-wide association study of short-acting *2-agonists. A novel genome-wide significant locus on chromosome 2 near ASB3. | Israel, Elliot; Lasky-Su, Jessica; Markezich, Amy; Damask, Amy; Szefler, Stanley J; Schuemann, Brooke; Klanderman, Barbara; Sylvia, Jody; Kazani, Shamsah; Wu, Rongling; Martinez, Fernando; Boushey, Homer A; Chinchilli, Vernon M; Mauger, Dave; Weiss, Scott | American journal of respiratory and critical care medicine. | 2015 Mar 1; | 530-7 | 25562107 |
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| Epileptogenic focus localization in treatment-resistant post-traumatic epilepsy. | Irimia, Andrei; Van Horn, John Darrell | Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia. | 2015 Apr; | 627-31 | 25542591 |
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| Subject-Motion Correction in HARDI Acquisitions: Choices and Consequences. | Elhabian, Shireen; Gur, Yaniv; Vachet, Clement; Piven, Joseph; Styner, Martin; Leppert, Ilana R; Pike, G Bruce; Gerig, Guido | Frontiers in neurology. | 2014; | 25538672 | |
| A novel patient-derived tumorgraft model with TRAF1-ALK anaplastic large-cell lymphoma translocation. | Abate, F; Todaro, M; van der Krogt, J-A; Boi, M; Landra, I; Machiorlatti, R; Tabbò, F; Messana, K; Abele, C; Barreca, A; Novero, D; Gaudiano, M; Aliberti, S; Di Giacomo, F; Tousseyn, T; Lasorsa, E; Crescenzo, R; Bessone, L; Ficarra, E; Acquaviva, A; Rinaldi, A; Ponzoni, M; Longo, D L; Aime, S; Cheng, M; Ruggeri, B; Piccaluga, P P; Pileri, S; Tiacci, E; Falini, B; Pera-Gresely, B; Cerchietti, L; Iqbal, J; Chan, W C; Shultz, L D; Kwee, I; Piva, R; Wlodarska, I; Rabadan, R; Bertoni, F; Inghirami, G; European T-cell Lymphoma Study Group | Leukemia. | 2015 Jun; | 25533804 | |
| Genotype to phenotype relationships in autism spectrum disorders. | Chang, Jonathan; Gilman, Sarah R; Chiang, Andrew H; Sanders, Stephan J; Vitkup, Dennis | Nature neuroscience. | 2015 Feb; | 191-8 | 25531569 |
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| Differentially private genome data dissemination through top-down specialization. | Wang, Shuang; Mohammed, Noman; Chen, Rui | BMC medical informatics and decision making. | 2014 Dec 8; | S2 | 25521306 |
| A community assessment of privacy preserving techniques for human genomes. | Jiang, Xiaoqian; Zhao, Yongan; Wang, Xiaofeng; Malin, Bradley; Wang, Shuang; Ohno-Machado, Lucila; Tang, Haixu | BMC medical informatics and decision making. | 2014 Dec 8; | S1 | 25521230 |
| Streamlined Genome Sequence Compression using Distributed Source Coding. | Wang, Shuang; Jiang, Xiaoqian; Chen, Feng; Cui, Lijuan; Cheng, Samuel | Cancer informatics. | 2014; | 25520552 | |
| Longitudinal quantification and visualization of intracerebral haemorrhage using multimodal magnetic resonance and diffusion tensor imaging. | Goh, S Y Matthew; Irimia, Andrei; Torgerson, Carinna M; Tubi, Meral A; Real, Courtney R; Hanley, Daniel F; Martin, Neil A; Vespa, Paul M; Van Horn, John D | Brain injury. | 2015; | 438-45 | 25518865 |
| Segmentation of cerebrovascular pathologies in stroke patients with spatial and shape priors. | Dalca, Adrian Vasile; Sridharan, Ramesh; Cloonan, Lisa; Fitzpatrick, Kaitlin M; Kanakis, Allison; Furie, Karen L; Rosand, Jonathan; Wu, Ona; Sabuncu, Mert; Rost, Natalia S; Golland, Polina | Med Image Comput Comput Assist Interv. | 2014; | 773-80 | 25513582 |
| Mixed-Effects Shape Models for Estimating Longitudinal Changes in Anatomy. | Datar, Manasi; Muralidharan, Prasanna; Kumar, Abhishek; Gouttard, Sylvain; Piven, Joseph; for the IBIS Network; Gerig, Guido; Whitaker, Ross; Fletcher, P Thomas | Spatio-temporal image analysis for longitudinal and time-series image data : second International Workshop, STIA 2012, held in conjunction with MICCAI 2012, Nice, France, October 1, 2012. Proceedings / Stanley Durrleman...[et al.] (eds..... | 2012 Oct; | 76-87 | 25506622 |
| Structured Set Intra Prediction With Discriminative Learning in a Max-Margin Markov Network for High Efficiency Video Coding. | Dai, Wenrui; Xiong, Hongkai; Jiang, Xiaoqian; Chen, Chang Wen | IEEE transactions on circuits and systems for video technology : a publication of the Circuits and Systems Society. | 2013 Nov; | 1941-1956 | 25505829 |
| Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia. | Wang, Jiguang; Khiabanian, Hossein; Rossi, Davide; Fabbri, Giulia; Gattei, Valter; Forconi, Francesco; Laurenti, Luca; Marasca, Roberto; Del Poeta, Giovanni; Foa, Robin; Pasqualucci, Laura; Gaidano, Gianluca; Rabadan, Raul | eLife. | 2014; | 25496728 | |
| The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). | Menze, Bjoern H; Jakab, Andras; Bauer, Stefan; Kalpathy-Cramer, Jayashree; Farahani, Keyvan; Kirby, Justin; Burren, Yuliya; Porz, Nicole; Slotboom, Johannes; Wiest, Roland; Lanczi, Levente; Gerstner, Elizabeth; Weber, Marc-André; Arbel, Tal; Avants, Brian B; Ayache, Nicholas; Buendia, Patricia; Collins, D Louis; Cordier, Nicolas; Corso, Jason J; Criminisi, Antonio; Das, Tilak; Delingette, Hervé; Demiralp, Ça?atay; Durst, Christopher R; Dojat, Michel; Doyle, Senan; Festa, Joana; Forbes, Florence; Geremia, Ezequiel; Glocker, Ben; Golland, Polina; Guo, Xiaotao; Hamamci, Andac; Iftekharuddin, Khan M; Jena, Raj; John, Nigel M; Konukoglu, Ender; Lashkari, Danial; Mariz, José Antonió; Meier, Raphael; Pereira, Sérgio; Precup, Doina; Price, Stephen J; Raviv, Tammy Riklin; Reza, Syed M S; Ryan, Michael; Sarikaya, Duygu; Schwartz, Lawrence; Shin, Hoo-Chang; Shotton, Jamie; Silva, Carlos A; Sousa, Nuno; Subbanna, Nagesh K; Szekely, Gabor; Taylor, Thomas J; Thomas, Owen M; Tustison, Nicholas J; Unal, Gozde; Vasseur, Flor; Wintermark, Max; Ye, Dong Hye; Zhao, Liang; Zhao, Binsheng; Zikic, Darko; Prastawa, Marcel; Reyes, Mauricio; Van Leemput, Koen | IEEE transactions on medical imaging. | 2015 Oct; | 25494501 | |
| Segmentation of cerebrovascular pathologies in stroke patients with spatial and shape priors. | Dalca, Adrian Vasile; Sridharan, Ramesh; Cloonan, Lisa; Fitzpatrick, Kaitlin M; Kanakis, Allison; Furie, Karen L; Rosand, Jonathan; Wu, Ona; Sabuncu, Mert; Rost, Natalia S; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2014; | 773-80 | 25485450 |
| Is my model good enough? Best practices for verification and validation of musculoskeletal models and simulations of movement. | Hicks, Jennifer L; Uchida, Thomas K; Seth, Ajay; Rajagopal, Apoorva; Delp, Scott L | Journal of biomechanical engineering. | 2015 Feb 1; | 20905 | 25474098 |
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| Differences in muscle activity between natural forefoot and rearfoot strikers during running. | Yong, Jennifer R; Silder, Amy; Delp, Scott L | Journal of biomechanics. | 2014 Nov 28; | 3593-7 | 25458201 |
| Integration of genomic data enables selective discovery of breast cancer drivers. | Sanchez-Garcia, Felix; Villagrasa, Patricia; Matsui, Junji; Kotliar, Dylan; Castro, Veronica; Akavia, Uri-David; Chen, Bo-Juen; Saucedo-Cuevas, Laura; Rodriguez Barrueco, Ruth; Llobet-Navas, David; Silva, Jose M; Pe'er, Dana | Cell. | 2014 Dec 4; | 1461-75 | 25433701 |
| Comment on: ''Zoo or savannah? Choice of training ground for evidence-based pharmacovigilance''. | Harpaz, Rave; DuMouchel, William; Shah, Nigam H | Drug safety. | 2015 Jan; | 113-4 | 25432779 |
| Multimodal neuroimaging feature learning for multiclass diagnosis of Alzheimer's disease. | Liu, Siqi; Liu, Sidong; Cai, Weidong; Che, Hangyu; Pujol, Sonia; Kikinis, Ron; Feng, Dagan; Fulham, Michael J; Adni | IEEE transactions on bio-medical engineering. | 2015 Apr; | 1132-40 | 25423647 |
| A community computational challenge to predict the activity of pairs of compounds. | Bansal, Mukesh; Yang, Jichen; Karan, Charles; Menden, Michael P; Costello, James C; Tang, Hao; Xiao, Guanghua; Li, Yajuan; Allen, Jeffrey; Zhong, Rui; Chen, Beibei; Kim, Minsoo; Wang, Tao; Heiser, Laura M; Realubit, Ronald; Mattioli, Michela; Alvarez, Mar | Nature biotechnology. | 2014 Dec; | 1213-22 | 25419740 |
| Technology-enhanced Interactive Teaching of Marginal, Joint and Conditional Probabilities: The Special Case of Bivariate Normal Distribution. | Dinov, Ivo D; Kamino, Scott; Bhakhrani, Bilal; Christou, Nicolas | Teaching statistics. | 2013; | 131-139 | 25419016 |
| Fitting Nonlinear Ordinary Differential Equation Models with Random Effects and Unknown Initial Conditions Using the Stochastic Approximation Expectation-Maximization (SAEM) Algorithm. | Chow, Sy-Miin; Lu, Zhaohua; Sherwood, Andrew; Zhu, Hongtu | Psychometrika. | 2016 Mar; | 25416456 | |
| Discovering chemistry with an ab initio nanoreactor. | Wang, Lee-Ping; Titov, Alexey; McGibbon, Robert; Liu, Fang; Pande, Vijay S; Martinez, Todd J | Nature chemistry. | 2014 Dec; | 1044-8 | 25411881 |
| Prediction of MicroRNA Precursors Using Parsimonious Feature Sets. | Stepanowsky, Petra; Levy, Eric; Kim, Jihoon; Jiang, Xiaoqian; Ohno-Machado, Lucila | Cancer informatics. | 2014; | 25392687 | |
| Disease Biomarker Query from RNA-Seq Data. | Han, Henry; Jiang, Xiaoqian | Cancer informatics. | 2014; | 81-94 | 25392686 |
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| Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks. | Chiu, Hua-Sheng; Llobet-Navas, David; Yang, Xuerui; Chung, Wei-Jen; Ambesi-Impiombato, Alberto; Iyer, Archana; Kim, Hyunjae Ryan; Seviour, Elena G; Luo, Zijun; Sehgal, Vasudha; Moss, Tyler; Lu, Yiling; Ram, Prahlad; Silva, José; Mills, Gordon B; Califano, | Genome research. | 2015 Feb; | 257-67 | 25378249 |
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| Single-cell mass cytometry of TCR signaling: amplification of small initial differences results in low ERK activation in NOD mice. | Mingueneau, Michael; Krishnaswamy, Smita; Spitzer, Matthew H; Bendall, Sean C; Stone, Erica L; Hedrick, Stephen M; Pe'er, Dana; Mathis, Diane; Nolan, Garry P; Benoist, Christophe | Proceedings of the National Academy of Sciences of the United States of America. | 2014 Nov 18; | 16466-71 | 25362052 |
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| A JOINT FRAMEWORK FOR 4D SEGMENTATION AND ESTIMATION OF SMOOTH TEMPORAL APPEARANCE CHANGES. | Gao, Yang; Prastawa, Marcel; Styner, Martin; Piven, Joseph; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging. | 2014 4; | 1291-1294 | 25356196 |
| A PRELIMINARY STUDY ON THE EFFECT OF MOTION CORRECTION ON HARDI RECONSTRUCTION. | Elhabian, Shireen; Gur, Yaniv; Vachet, Clement; Piven, Joseph; Styner, Martin; Leppert, Ilana; Pike, G Bruce; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging. | 2014 4; | 1055-1058 | 25356195 |
| PARAMETRIC REGRESSION SCHEME FOR DISTRIBUTIONS: ANALYSIS OF DTI FIBER TRACT DIFFUSION CHANGES IN EARLY BRAIN DEVELOPMENT. | Sharma, Anuja; Fletcher, P Thomas; Gilmore, John H; Escolar, Maria L; Gupta, Aditya; Styner, Martin; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging. | 2014 4; | 559-562 | 25356194 |
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| GEODESIC REGRESSION OF IMAGE AND SHAPE DATA FOR IMPROVED MODELING OF 4D TRAJECTORIES. | Fishbaugh, James; Prastawa, Marcel; Gerig, Guido; Durrleman, Stanley | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging. | 2014 4; | 385-388 | 25356192 |
| Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery. | Zhao, Yongan; Wang, Xiaofeng; Jiang, Xiaoqian; Ohno-Machado, Lucila; Tang, Haixu | Journal of the American Medical Informatics Association : JAMIA. | 2015 Jan; | 100-8 | 25352565 |
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| Fluoroquinolone resistant rectal colonization predicts risk of infectious complications after transrectal prostate biopsy. | Liss, Michael A; Taylor, Stephen A; Batura, Deepak; Steensels, Deborah; Chayakulkeeree, Methee; Soenens, Charlotte; Rao, G Gopal; Dash, Atreya; Park, Samuel; Patel, Nishant; Woo, Jason; McDonald, Michelle; Nseyo, Unwanaobong; Banapour, Pooya; Unterberg, S | The Journal of urology. | 2014 Dec; | 1673-8 | 24928266 |
| Integrative biology identifies shared transcriptional networks in CKD. | Martini, Sebastian; Nair, Viji; Keller, Benjamin J; Eichinger, Felix; Hawkins, Jennifer J; Randolph, Ann; Boger, Carsten A; Gadegbeku, Crystal A; Fox, Caroline S; Cohen, Clemens D; Kretzler, Matthias; European Renal cDNA Bank; C-PROBE Cohort; CKDGen Conso | Journal of the American Society of Nephrology : JASN. | 2014 Nov; | 2559-72 | 24925724 |
| OpenIGTLink interface for state control and visualisation of a robot for image-guided therapy systems. | Tauscher, Sebastian; Tokuda, Junichi; Schreiber, Gunter; Neff, Thomas; Hata, Nobuhiko; Ortmaier, Tobias | International journal of computer assisted radiology and surgery. | 2015 Mar; | 285-92 | 24923473 |
| MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure. | Kim, Jihoon; Levy, Eric; Ferbrache, Alex; Stepanowsky, Petra; Farcas, Claudiu; Wang, Shuang; Brunner, Stefan; Bath, Tyler; Wu, Yuan; Ohno-Machado, Lucila | Bioinformatics (Oxford, England). | 2014 Oct; | 2826-7 | 24907367 |
| Structural bioinformatics of the interactome. | Petrey, Donald; Honig, Barry | Annual review of biophysics | 2014 May 6 | 193-210 | 24895853 |
| Tracing Compartmentalized NADPH Metabolism in the Cytosol and Mitochondria of Mammalian Cells. | Lewis, Caroline A; Parker, Seth J; Fiske, Brian P; McCloskey, Douglas; Gui, Dan Y; Green, Courtney R; Vokes, Natalie I; Feist, Adam M; Vander Heiden, Matthew G; Metallo, Christian M | Molecular cell | 2014 May 28 | NULL | 24882210 |
| A community effort to assess and improve drug sensitivity prediction algorithms. | Costello, James C; Heiser, Laura M; Georgii, Elisabeth; Gonen, Mehmet; Menden, Michael P; Wang, Nicholas J; Bansal, Mukesh; Ammad-ud-din, Muhammad; Hintsanen, Petteri; Khan, Suleiman A; Mpindi, John-Patrick; Kallioniemi, Olli; Honkela, Antti; Aittokallio, | Nature biotechnology. | 2014 Dec; | 1202-12 | 24880487 |
| Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein. | Gonzalez-Hernandez, Marta J; Cavalcoli, James D; Sartor, Maureen A; Contreras-Galindo, Rafael; Meng, Fan; Dai, Manhong; Dube, Derek; Saha, Anjan K; Gitlin, Scott D; Omenn, Gilbert S; Kaplan, Mark H; Markovitz, David M | Journal of virology. | 2014 Aug; | 8924-35 | 24872592 |
| Natural language processing in biomedicine: a unified system architecture overview. | Doan, Son; Conway, Mike; Phuong, Tu Minh; Ohno-Machado, Lucila | Methods in molecular biology (Clifton, N.J.) | 2014 | 275-94 | 24870142 |
| Evaluating the effects of machine pre-annotation and an interactive annotation interface on manual de-identification of clinical text. | South, Brett R; Mowery, Danielle; Suo, Ying; Leng, Jianwei; Ferrandez, Oscar; Meystre, Stephane M; Chapman, Wendy W | Journal of biomedical informatics. | 2014 Aug; | 162-72 | 24859155 |
| Transfer learning based clinical concept extraction on data from multiple sources. | Lv, Xinbo; Guan, Yi; Deng, Benyang | Journal of biomedical informatics. | 2014 Dec; | 55-64 | 24859154 |
| Structural and connectomic neuroimaging for the personalized study of longitudinal alterations in cortical shape, thickness and connectivity after traumatic brain injury. | Irimia, A; Goh, S Y; Torgerson, C M; Vespa, P M; Van Horn, J D | Journal of neurosurgical sciences | 2014 May 20 | NULL | 24844173 |
| Meshless Modeling of Deformable Shapes and their Motion. | Adams, Bart; Ovsjanikov, Maks; Wand, Michael; Seidel, Hans-Peter; Guibas, Leonidas J | Computer animation / ACM SIGGRAPH/Eurographics Symposium on Computer Animation. ACM SIGGRAPH Symposium on Computer Animation. | 2008; | 77-86 | 24839614 |
| Categories and Functional Units: An Infinite Hierarchical Model for Brain Activations. | Lashkari, Danial; Sridharan, Ramesh; Golland, Polina | Advances in neural information processing systems. | 2010 Jan 1; | 1252-1260 | 24839377 |
| Patient-level temporal aggregation for text-based asthma status ascertainment. | Wu, Stephen T; Juhn, Young J; Sohn, Sunghwan; Liu, Hongfang | Journal of the American Medical Informatics Association : JAMIA. | 2014 Sep-Oct; | 876-84 | 24833775 |
| Efficient inverse isoparametric mapping algorithm for whole-body computed tomography registration using deformations predicted by nonlinear finite element modeling. | Li, Mao; Wittek, Adam; Miller, Karol | Journal of biomechanical engineering | 2014 Aug | NULL | 24828796 |
| Cross-species regulatory network analysis identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. | Aytes, Alvaro; Mitrofanova, Antonina; Lefebvre, Celine; Alvarez, Mariano J; Castillo-Martin, Mireia; Zheng, Tian; Eastham, James A; Gopalan, Anuradha; Pienta, Kenneth J; Shen, Michael M; Califano, Andrea; Abate-Shen, Cory | Cancer cell | 2014 May 12 | 638-51 | 24823640 |
| Response of Escherichia coli growth rate to osmotic shock. | Rojas, Enrique; Theriot, Julie A; Huang, Kerwyn Casey | Proceedings of the National Academy of Sciences of the United States of America | 2014 May 27 | 7807-12 | 24821776 |
| Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture. | Mandl, Kenneth D; Kohane, Isaac S; McFadden, Douglas; Weber, Griffin M; Natter, Marc; Mandel, Joshua; Schneeweiss, Sebastian; Weiler, Sarah; Klann, Jeffrey G; Bickel, Jonathan; Adams, William G; Ge, Yaorong; Zhou, Xiaobo; Perkins, James; Marsolo, Keith; B | Journal of the American Medical Informatics Association : JAMIA | 2014 Jul | 615-20 | 24821734 |
| Stable Atlas-based Mapped Prior (STAMP) machine-learning segmentation for multicenter large-scale MRI data. | Kim, Eun Young; Magnotta, Vincent A; Liu, Dawei; Johnson, Hans J | Magnetic resonance imaging | 2014 May 9 | NULL | 24818817 |
| Functional Geometry Alignment and Localization of Brain Areas. | Langs, Georg; Golland, Polina; Tie, Yanmei; Rigolo, Laura; Golby, Alexandra J | Advances in neural information processing systems. | 2010; | 1225-1233 | 24808719 |
| A graph algebra for scalable visual analytics. | Shaverdian, Anna A; Zhou, Hao; Michailidis, George; Jagadish, Hosagrahar V | IEEE computer graphics and applications. | 2012 Jul-Aug; | 26-33 | 24806630 |
| Multiatlas segmentation as nonparametric regression. | Awate, Suyash P; Whitaker, Ross T | IEEE transactions on medical imaging. | 2014 Sep; | 1803-17 | 24802528 |
| Coping with confounds in multivoxel pattern analysis: what should we do about reaction time differences? A comment on Todd, Nystrom & Cohen 2013. | Woolgar, Alexandra; Golland, Polina; Bode, Stefan | NeuroImage | 2014 Sep | 506-12 | 24793832 |
| Automatic segmentation of head and neck CT images for radiotherapy treatment planning using multiple atlases, statistical appearance models, and geodesic active contours. | Fritscher, Karl D; Peroni, Marta; Zaffino, Paolo; Spadea, Maria Francesca; Schubert, Rainer; Sharp, Gregory | Medical physics | 2014 May | 51910 | 24784389 |
| Vision 20/20: perspectives on automated image segmentation for radiotherapy. | Sharp, Gregory; Fritscher, Karl D; Pekar, Vladimir; Peroni, Marta; Shusharina, Nadya; Veeraraghavan, Harini; Yang, Jinzhong | Medical physics | 2014 May | 50902 | 24784366 |
| pSCANNER: patient-centered Scalable National Network for Effectiveness Research. | Ohno-Machado, Lucila; Agha, Zia; Bell, Douglas S; Dahm, Lisa; Day, Michele E; Doctor, Jason N; Gabriel, Davera; Kahlon, Maninder K; Kim, Katherine K; Hogarth, Michael; Matheny, Michael E; Meeker, Daniella; Nebeker, Jonathan R; pSCANNER team | Journal of the American Medical Informatics Association : JAMIA | 2014 Jul-Aug | 621-6 | 24780722 |
| Evaluating marker-guided treatment selection strategies. | Matsouaka, Roland A; Li, Junlong; Cai, Tianxi | Biometrics | 2014 Apr 29 | NULL | 24779731 |
| Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge. | Huang, Wei; Li, Xin; Chen, Yiyi; Li, Xia; Chang, Ming-Ching; Oborski, Matthew J; Malyarenko, Dariya I; Muzi, Mark; Jajamovich, Guido H; Fedorov, Andriy; Tudorica, Alina; Gupta, Sandeep N; Laymon, Charles M; Marro, Kenneth I; Dyvorne, Hadrien A; Miller, James V; Barbodiak, Daniel P; Chenevert, Thomas L; Yankeelov, Thomas E; Mountz, James M; Kinahan, Paul E; Kikinis, Ron; Taouli, Bachir; Fennessy, Fiona; Kalpathy-Cramer, Jayashree | Translational oncology. | 2014 Feb; | 24772219 | |
| Errors in Quantitative Image Analysis due to Platform-Dependent Image Scaling. | Chenevert, Thomas L; Malyarenko, Dariya I; Newitt, David; Li, Xin; Jayatilake, Mohan; Tudorica, Alina; Fedorov, Andriy; Kikinis, Ron; Liu, Tiffany Ting; Muzi, Mark; Oborski, Matthew J; Laymon, Charles M; Li, Xia; Thomas, Yankeelov; Jayashree, Kalpathy-Cra | Translational oncology. | 2014 Feb; | 24772209 | |
| Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development. | Bendall, Sean C; Davis, Kara L; Amir, El-Ad David; Tadmor, Michelle D; Simonds, Erin F; Chen, Tiffany J; Shenfeld, Daniel K; Nolan, Garry P; Pe'er, Dana | Cell | 2014 Apr 24 | 714-25 | 24766814 |
| Knowledge-based fragment binding prediction. | Tang, Grace W; Altman, Russ B | PLoS computational biology | 2014 Apr | e1003589 | 24762971 |
| Application of Tolerance Limits to the Characterization of Image Registration Performance. | Fedorov, Andriy; Wells, William; Kikinis, Ron; Tempany, Clare; Vangel, Mark | IEEE transactions on medical imaging | 2014 Apr 16 | NULL | 24759985 |
| Millisecond dynamics of RNA polymerase II translocation at atomic resolution. | Silva, Daniel-Adriano; Weiss, Dahlia R; Pardo Avila, Fatima; Da, Lin-Tai; Levitt, Michael; Wang, Dong; Huang, Xuhui | Proceedings of the National Academy of Sciences of the United States of America | 2014 May 27 | 7665-70 | 24753580 |
| HD CAGnome: a search tool for huntingtin CAG repeat length-correlated genes. | Galkina, Ekaterina I; Shin, Aram; Coser, Kathryn R; Shioda, Toshi; Kohane, Isaac S; Seong, Ihn Sik; Wheeler, Vanessa C; Gusella, James F; Macdonald, Marcy E; Lee, Jong-Min | PloS one | 2014 | e95556 | 24751919 |
| Signal Processing and Machine Learning with Differential Privacy: Algorithms and challenges for continuous data. | Sarwate, Anand D; Chaudhuri, Kamalika | IEEE signal processing magazine | 2013 Sep 1 | 86-94 | 24737929 |
| Molecular testing of 163 patients with Morquio A (Mucopolysaccharidosis IVA) identifies 39 novel GALNS mutations. | Morrone, A; Tylee, K L; Al-Sayed, M; Brusius-Facchin, A C; Caciotti, A; Church, H J; Coll, M J; Davidson, K; Fietz, M J; Gort, L; Hegde, M; Kubaski, F; Lacerda, L; Laranjeira, F; Leistner-Segal, S; Mooney, S; Pajares, S; Pollard, L; Ribeiro, I; Wang, R Y; | Molecular genetics and metabolism | 2014 Mar 20 | NULL | 24726177 |
| A complete system for automatic extraction of left ventricular myocardium from CT images using shape segmentation and contour evolution. | Liangjia Zhu; Yi Gao; Appia, Vikram; Yezzi, Anthony; Arepalli, Chesnal; Faber, Tracy; Stillman, Arthur; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 2014 Mar | 1340-51 | 24723531 |
| Ensuring privacy in the study of pathogen genetics. | Mehta, Sanjay R; Vinterbo, Staal A; Little, Susan J | The Lancet infectious diseases | 2014 Apr 7 | NULL | 24721230 |
| Toward Enhanced Pharmacovigilance Using Patient-Generated Data on the Internet. | White, R W; Harpaz, R; Shah, N H; Dumouchel, W; Horvitz, E | Clinical pharmacology and therapeutics | 2014 Apr 8 | NULL | 24713590 |
| Mutual information as a measure of image quality for 3D dynamic lung imaging with EIT. | Crabb, M G; Davidson, J L; Little, R; Wright, P; Morgan, A R; Miller, C A; Naish, J H; Parker, G J M; Kikinis, R; McCann, H; Lionheart, W R B | Physiological measurement | 2014 May | 863-79 | 24710978 |
| Identifying regulatory mechanisms underlying tumorigenesis using locus expression signature analysis. | Lee, Eunjee; de Ridder, Jeroen; Kool, Jaap; Wessels, Lodewyk F A; Bussemaker, Harmen J | Proceedings of the National Academy of Sciences of the United States of America | 2014 Apr 15 | 5747-52 | 24706889 |
| Response to letters regarding article, "unexpected effect of proton pump inhibitors: elevation of the cardiovascular risk factor asymmetric dimethylarginine". | Ghebremariam, Yohannes T; Lee, Jerry C; LePendu, Paea; Erlanson, Daniel A; Slaviero, Anna; Shah, Nigam H; Leiper, James M; Cooke, John P | Circulation | 2014 Apr 1 | e428 | 24687654 |
| Population-level evidence for an autoimmune etiology of epilepsy. | Ong, Mei-Sing; Kohane, Isaac S; Cai, Tianxi; Gorman, Mark P; Mandl, Kenneth D | JAMA neurology | 2014 May | 569-74 | 24687183 |
| Joint modeling of imaging and genetics. | Batmanghelich, Nematollah K; Dalca, Adrian V; Sabuncu, Mert R; Polina, Golland; ADNI | Information processing in medical imaging : proceedings of the ... conference | 2013 | 766-77 | 24684016 |
| Geodesic shape regression in the framework of currents. | Fishbaugh, James; Prastawa, Marcel; Gerig, Guido; Durrleman, Stanley | Information processing in medical imaging : proceedings of the ... conference | 2013 | 718-29 | 24684012 |
| Bayesian segmentation of atrium wall using globally-optimal graph cuts on 3D meshes. | Veni, Gopalkrishna; Fu, Zhisong; Awate, Suyash P; Whitaker, Ross T | Information processing in medical imaging : proceedings of the ... conference | 2013 | 656-67 | 24684007 |
| Group-wise cortical correspondence via sulcal curve-constrained entropy minimization. | Lyu, Ilwoo; Kim, Sun Hyung; Seong, Joon-Kyung; Yoo, Sang Wook; Evans, Alan C; Shi, Yundi; Sanchez, Mar; Niethammer, Marc; Styner, Martin A | Information processing in medical imaging : proceedings of the ... conference | 2013 | 364-75 | 24683983 |
| Sparse projections of medical images onto manifolds. | Chen, George H; Wachinger, Christian; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference | 2013 | 292-303 | 24683977 |
| A longitudinal functional analysis framework for analysis of white matter tract statistics. | Yuan, Ying; Gilmore, John H; Geng, Xiujuan; Styner, Martin A; Chen, Kehui; Wang, Jane-Ling; Zhu, Hongtu | Information processing in medical imaging : proceedings of the ... conference | 2013 | 220-31 | 24683971 |
| Detecting Inappropriate Access to Electronic Health Records Using Collaborative Filtering. | Menon, Aditya Krishna; Jiang, Xiaoqian; Kim, Jihoon; Vaidya, Jaideep; Ohno-Machado, Lucila | Machine learning | 2014 Apr 1 | 87-101 | 24683293 |
| Aldosterone dysregulation with aging predicts renal vascular function and cardiovascular risk. | Brown, Jenifer M; Underwood, Patricia C; Ferri, Claudio; Hopkins, Paul N; Williams, Gordon H; Adler, Gail K; Vaidya, Anand | Hypertension | 2014 Jun | 1205-11 | 24664291 |
| Towards Effcient Label Fusion by Pre-Alignment of Training Data. | Depa, Michal; Holmvang, Godtfred; Schmidt, Ehud J; Golland, Polina; Sabuncu, Mert R | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2011; | 38-46 | 24660167 |
| Landmark Estimation of Survival and Treatment Effect in a Randomized Clinical Trial. | Parast, Layla; Tian, Lu; Cai, Tianxi | Journal of the American Statistical Association | 2014 Jan 1 | 384-394 | 24659838 |
| Bayesian energy landscape tilting: towards concordant models of molecular ensembles. | Beauchamp, Kyle A; Pande, Vijay S; Das, Rhiju | Biophysical journal | 2014 Mar 18 | 1381-90 | 24655513 |
| Empirical Bayes methods enable advanced population-level analyses of single-molecule FRET experiments. | van de Meent, Jan-Willem; Bronson, Jonathan E; Wiggins, Chris H; Gonzalez Jr, Ruben L | Biophysical journal | 2014 Mar 18 | 1327-37 | 24655508 |
| Developing image processing meta-algorithms with data mining of multiple metrics. | Leung, Kelvin; Cunha, Alexandre; Toga, A W; Parker, D Stott | Computational and mathematical methods in medicine | 2014 | 383465 | 24653748 |
| Cerebral white matter abnormalities and their associations with negative but not positive symptoms of schizophrenia. | Asami, Takeshi; Hyuk Lee, Sang; Bouix, Sylvain; Rathi, Yogesh; Whitford, Thomas J; Niznikiewicz, Margaret; Nestor, Paul; McCarley, Robert W; Shenton, Martha E; Kubicki, Marek | Psychiatry research | 2014 Apr 30 | 52-9 | 24650453 |
| Higher plasma vitamin D is associated with reduced risk of Clostridium difficile infection in patients with inflammatory bowel diseases. | Ananthakrishnan, A N; Cagan, A; Gainer, V S; Cheng, S-C; Cai, T; Szolovits, P; Shaw, S Y; Churchill, S; Karlson, E W; Murphy, S N; Kohane, I; Liao, K P | Alimentary pharmacology & therapeutics | 2014 May | 1136-42 | 24641590 |
| Convection-enhanced delivery of etoposide is effective against murine proneural glioblastoma. | Sonabend, Adam M; Carminucci, Arthur S; Amendolara, Benjamin; Bansal, Mukesh; Leung, Richard; Lei, Liang; Realubit, Ronald; Li, Hai; Karan, Charles; Yun, Jonathan; Showers, Christopher; Rothcock, Robert; O, Jane; Califano, Andrea; Canoll, Peter; Bruce, Je | Neuro-oncology. | 2014 Sep; | 1210-9 | 24637229 |
| High precision prediction of functional sites in protein structures. | Buturovic, Ljubomir; Wong, Mike; Tang, Grace W; Altman, Russ B; Petkovic, Dragutin | PloS one | 2014 | e91240 | 24632601 |
| Thromboprophylaxis Is Associated With Reduced Post-hospitalization Venous Thromboembolic Events in Patients With Inflammatory Bowel Diseases. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Gainer, Vivian S; Cheng, Su-Chun; Cai, Tianxi; Scoville, Elizabeth; Konijeti, Gauree G; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine | Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association | 2014 Mar 12 | NULL | 24632349 |
| MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data. | Gan, Zhuohui; Wang, Jianwu; Salomonis, Nathan; Stowe, Jennifer C; Haddad, Gabriel G; McCulloch, Andrew D; Altintas, Ilkay; Zambon, Alexander C | BMC bioinformatics | 2014 | 69 | 24621103 |
| Neuroinformatics challenges to the structural, connectomic, functional and electrophysiological multimodal imaging of human traumatic brain injury. | Goh, S Y Matthew; Irimia, Andrei; Torgerson, Carinna M; Horn, John D Van | Frontiers in neuroinformatics. | 2014; | 24616696 | |
| Changes in tibiofemoral forces due to variations in muscle activity during walking. | Demers, Matthew S; Pal, Saikat; Delp, Scott L | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2014 Feb 26 | 769-76 | 24615885 |
| Pregnancy in women with a history of Kawasaki disease: management and outcomes. | Gordon, Ct; Jimenez-Fernandez, S; Daniels, Lb; Kahn, Am; Tarsa, M; Matsubara, T; Shimizu, C; Burns, Jc; Gordon, Jb | BJOG : an international journal of obstetrics and gynaecology | 2014 Mar 6 | NULL | 24597833 |
| Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies. | Walls, Ramona L; Deck, John; Guralnick, Robert; Baskauf, Steve; Beaman, Reed; Blum, Stanley; Bowers, Shawn; Buttigieg, Pier Luigi; Davies, Neil; Endresen, Dag; Gandolfo, Maria Alejandra; Hanner, Robert; Janning, Alyssa; Krishtalka, Leonard; Matsunaga, And | PloS one | 2014 | e89606 | 24595056 |
| The automated function prediction SIG looks back at 2013 and prepares for 2014. | Wass, Mark N; Mooney, Sean D; Linial, Michal; Radivojac, Predrag; Friedberg, Iddo | Bioinformatics (Oxford, England) | 2014 Jul 15 | 2091-2 | 24590444 |
| Automated detection of off-label drug use. | Jung, Kenneth; LePendu, Paea; Chen, William S; Iyer, Srinivasan V; Readhead, Ben; Dudley, Joel T; Shah, Nigam H | PloS one | 2014 | e89324 | 24586689 |
| Interactive MRI Segmentation with Controlled Active Vision. | Karasev, Peter; Kolesov, Ivan; Chudy, Karol; Muller, Grant; Xerogeanes, John; Tannenbaum, Allen | Proceedings of the ... IEEE Conference on Decision & Control / IEEE Control Systems Society. IEEE Conference on Decision & Control | 2011 | 2293-2298 | 24584213 |
| Multifold Bayesian kernelization in Alzheimer's diagnosis. | Liu, Sidong; Song, Yang; Cai, Weidong; Pujol, Sonia; Kikinis, Ron; Wang, Xiaogang; Feng, Dagan | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2013 | 303-10 | 24579154 |
| Geodesic distances to landmarks for dense correspondence on ensembles of complex shapes. | Datar, Manasi; Lyu, Ilwoo; Kim, SunHyung; Cates, Joshua; Styner, Martin A; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2013 | 19-26 | 24579119 |
| Systematic network lesioning reveals the core white matter scaffold of the human brain. | Irimia, Andrei; Van Horn, John D | Frontiers in human neuroscience. | 2014; | 24574993 | |
| Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline. | Wang, Jiahui; Vachet, Clement; Rumple, Ashley; Gouttard, Sylvain; Ouziel, Clementine; Perrot, Emilie; Du, Guangwei; Huang, Xuemei; Gerig, Guido; Styner, Martin | Frontiers in neuroinformatics | 2014 | 7 | 24567717 |
| SAVI: a statistical algorithm for variant frequency identification. | Trifonov, Vladimir; Pasqualucci, Laura; Tiacci, Enrico; Falini, Brunangelo; Rabadan, Raul | BMC systems biology | 2013 | S2 | 24564980 |
| On the mechanics of growing thin biological membranes. | Rausch, Manuel K; Kuhl, Ellen | Journal of the mechanics and physics of solids | 2014 Feb 1 | 128-140 | 24563551 |
| Mortality and extraintestinal cancers in patients with primary sclerosing cholangitis and inflammatory bowel disease. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Gainer, Vivian S; Cheng, Su-Chun; Cai, Tianxi; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine P | Journal of Crohn's & colitis | 2014 Feb 18 | NULL | 24559536 |
| Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes. | Udpa, Nitin; Ronen, Roy; Zhou, Dan; Liang, Junbin; Stobdan, Tsering; Appenzeller, Otto; Yin, Ye; Du, Yuanping; Guo, Lixia; Cao, Rui; Wang, Yu; Jin, Xin; Huang, Chen; Jia, Wenlong; Cao, Dandan; Guo, Guangwu; Claydon, Victoria E; Hainsworth, Roger; Gamboa, | Genome biology. | 2014; | R36 | 24555826 |
| When you can't tell when it hurts: a preliminary algorithm to assess pain in patients who can't communicate. | Wang, Shuang; Jiang, Xiaoqian; Ji, Zhanglong; El-Kareh, Robert; Choi, Jeeyae; Kim, Hyeoneui | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2013 | 1429-37 | 24551418 |
| Crowdsourcing the verification of relationships in biomedical ontologies. | Mortensen, Jonathan M; Musen, Mark A; Noy, Natalya F | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2013 | 1020-9 | 24551391 |
| Building and evaluating an ontology-based tool for reasoning about consent permission. | Grando, Adela; Schwab, Richard | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2013 | 514-23 | 24551354 |
| Effects of polymerization and nucleotide identity on the conformational dynamics of the bacterial actin homolog MreB. | Colavin, Alexandre; Hsin, Jen; Huang, Kerwyn Casey | Proceedings of the National Academy of Sciences of the United States of America | 2014 Mar 4 | 3585-90 | 24550504 |
| Genetic lesions associated with chronic lymphocytic leukemia chemo-refractoriness. | Messina, Monica; Del Giudice, Ilaria; Khiabanian, Hossein; Rossi, Davide; Chiaretti, Sabina; Rasi, Silvia; Spina, Valeria; Holmes, Antony B; Marinelli, Marilisa; Fabbri, Giulia; Piciocchi, Alfonso; Mauro, Francesca R; Guarini, Anna; Gaidano, Gianluca; Dal | Blood | 2014 Apr 10 | 2378-88 | 24550227 |
| Annotating the structure and components of a nanoparticle formulation using computable string expressions. | Thomas, Dennis G; Chikkagoudar, Satish; Chappell, Alan R; Baker, Nathan A | Proceedings. IEEE International Conference on Bioinformatics and Biomedicine. | 2012 Dec 31; | 889-894 | 24533226 |
| VARYING COEFFICIENT MODEL FOR MODELING DIFFUSION TENSORS ALONG WHITE MATTER TRACTS. | Yuan, Ying; Zhu, Hongtu; Styner, Martin; Gilmore, John H; Marron, J S | The annals of applied statistics | 2013 Mar | 102-125 | 24533040 |
| Rare copy number variation in treatment-resistant major depressive disorder. | O'Dushlaine, Colm; Ripke, Stephan; Ruderfer, Douglas M; Hamilton, Steven P; Fava, Maurizio; Iosifescu, Dan V; Kohane, Isaac S; Churchill, Susanne E; Castro, Victor M; Clements, Caitlin C; Blumenthal, Sarah R; Murphy, Shawn N; Smoller, Jordan W; Perlis, Ro | Biological psychiatry. | 2014 Oct 1; | 536-41 | 24529801 |
| DTIPrep: quality control of diffusion-weighted images. | Oguz, Ipek; Farzinfar, Mahshid; Matsui, Joy; Budin, Francois; Liu, Zhexing; Gerig, Guido; Johnson, Hans J; Styner, Martin | Frontiers in neuroinformatics. | 2014; | 24523693 | |
| hARACNe: improving the accuracy of regulatory model reverse engineering via higher-order data processing inequality tests. | Jang, In Sock; Margolin, Adam; Califano, Andrea | Interface focus. | 2013 Aug 06; | 24511376 | |
| Semi-Automatic Parcellation of the Corpus Striatum. | Al-Hakim, Ramsey; Nain, Delphine; Levitt, James; Shenton, Martha; Tannenbaum, Allen | Proceedings of SPIE | 2007 Mar 5 | 651236 | 24511366 |
| Validation of catheter segmentation for MR-guided gynecologic cancer brachytherapy. | Pernelle, Guillaume; Mehrtash, Alireza; Barber, Lauren; Damato, Antonio; Wang, Wei; Seethamraju, Ravi Teja; Schmidt, Ehud; Cormack, Robert A; Wells, Williams; Viswanathan, Akila; Kapur, Tina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2013 | 380-7 | 24505784 |
| Contour-driven regression for label inference in atlas-based segmentation. | Wachinger, Christian; Sharp, Gregory C; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2013 | 211-8 | 24505763 |
| Particle-guided image registration. | Lee, Joohwi; Lyu, Ilwoo; Oguz, Ipek; Styner, Martin A | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2013 | 203-10 | 24505762 |
| Detecting epileptic regions based on global brain connectivity patterns. | Sweet, Andrew; Venkataraman, Archana; Stufflebeam, Steven M; Liu, Hesheng; Tanaka, Naoro; Madsen, Joseph; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2013 | 98-105 | 24505654 |
| Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia. | Rossi, Davide; Khiabanian, Hossein; Spina, Valeria; Ciardullo, Carmela; Bruscaggin, Alessio; Fama, Rosella; Rasi, Silvia; Monti, Sara; Deambrogi, Clara; De Paoli, Lorenzo; Wang, Jiguang; Gattei, Valter; Guarini, Anna; Foa, Robin; Rabadan, Raul; Gaidano, G | Blood | 2014 Apr 3 | 2139-47 | 24501221 |
| Specificity of regulatory T cells that modulate vascular inflammation. | Franco, Alessandra; Touma, Ranim; Song, Yali; Shimizu, Chisato; Tremoulet, Adriana H; Kanegaye, John T; Burns, Jane C | Autoimmunity | 2014 Mar | 95-104 | 24490882 |
| Diagnostic Criteria for Temporomandibular Disorders (DC/TMD) for Clinical and Research Applications: recommendations of the International RDC/TMD Consortium Network* and Orofacial Pain Special Interest Group?. | Schiffman, Eric; Ohrbach, Richard; Truelove, Edmond; Look, John; Anderson, Gary; Goulet, Jean-Paul; List, Thomas; Svensson, Peter; Gonzalez, Yoly; Lobbezoo, Frank; Michelotti, Ambra; Brooks, Sharon L; Ceusters, Werner; Drangsholt, Mark; Ettlin, Dominik; Gaul, Charly; Goldberg, Louis J; Haythornthwaite, Jennifer A; Hollender, Lars; Jensen, Rigmor; John, Mike T; De Laat, Antoon; de Leeuw, Reny; Maixner, William; van der Meulen, Marylee; Murray, Greg M; Nixdorf, Donald R; Palla, Sandro; Petersson, Arne; Pionchon, Paul; Smith, Barry; Visscher, Corine M; Zakrzewska, Joanna; Dworkin, Samuel F; International RDC/TMD Consortium Network, International association for Dental Research; Orofacial Pain Special Interest Group, International Association for the Study of Pain | Journal of oral & facial pain and headache. | 2014; | 24482784 | |
| Differential privacy based on importance weighting. | Ji, Zhanglong; Elkan, Charles | Machine learning | 2013 Oct | 163-183 | 24482559 |
| 3D of Brain Shape and Volume After Cranial Vault Remodeling Surgery for Craniosynostosis Correction in Infants. | Paniagua, Beatriz; Emodi, Omri; Hill, Jonathan; Fishbaugh, James; Pimenta, Luiz A; Aylward, Stephen R; Andinet, Enquobahrie; Gerig, Guido; Gilmore, John; van Aalst, John A; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2013 Mar 29 | 86720V | 24465118 |
| A Patient-Specific Segmentation Framework for Longitudinal MR Images of Traumatic Brain Injury. | Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Chambers, Micah C; Vespa, Paul M; Van Horn, John D; Gerig, Guido | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2012 Mar 23 | 831402 | 24465115 |
| Web-based tools for modelling and analysis of multivariate data: California ozone pollution activity. | Dinov, Ivo D; Christou, Nicolas | International journal of mathematical education in science and technology. | 2011 Sep 01; | 24465054 | |
| More accurate neuronavigation data provided by biomechanical modeling instead of rigid registration. | Garlapati, Revanth Reddy; Roy, Aditi; Joldes, Grand Roman; Wittek, Adam; Mostayed, Ahmed; Doyle, Barry; Warfield, Simon Keith; Kikinis, Ron; Knuckey, Neville; Bunt, Stuart; Miller, Karol | Journal of neurosurgery | 2014 Jun | 1477-83 | 24460486 |
| MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing. | Mort, Matthew; Sterne-Weiler, Timothy; Li, Biao; Ball, Edward V; Cooper, David N; Radivojac, Predrag; Sanford, Jeremy R; Mooney, Sean D | Genome biology | 2014 Jan 13 | R19 | 24451234 |
| MODELING LONGITUDINAL MRI CHANGES IN POPULATIONS USING A LOCALIZED, INFORMATION-THEORETIC MEASURE OF CONTRAST. | Vardhan, Avantika; Prastawa, Marcel; Sharma, Anuja; Piven, Joseph; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2013 Dec 31 | 1396-1399 | 24443698 |
| ANALYZING IMAGING BIOMARKERS FOR TRAUMATIC BRAIN INJURY USING 4D MODELING OF LONGITUDINAL MRI. | Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Chambers, Micah C; Sadeghi, Neda; Vespa, Paul M; van Horn, John D; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2013 Dec 31 | 1392-1395 | 24443697 |
| PROPER ORDERED MESHING OF COMPLEX SHAPES AND OPTIMAL GRAPH CUTS APPLIED TO ATRIAL-WALL SEGMENTATION FROM DE-MRI. | Veni, Gopalkrishna; Fu, Zhisong; Awate, Suyash P; Whitaker, Ross T | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2013 Dec 31; | 24443695 | |
| SPATIOTEMPORAL MODELING OF DISCRETE-TIME DISTRIBUTION-VALUED DATA APPLIED TO DTI TRACT EVOLUTION IN INFANT NEURODEVELOPMENT. | Sharma, Anuja; Fletcher, P Thomas; Gilmore, John H; Escolar, Maria L; Gupta, Aditya; Styner, Martin; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2013 Dec 31 | 684-687 | 24443688 |
| LONGITUDINAL GROWTH MODELING OF DISCRETE-TIME FUNCTIONS WITH APPLICATION TO DTI TRACT EVOLUTION IN EARLY NEURODEVELOPMENT. | Sharma, Anuja; Durrleman, Stanley; Gilmore, John H; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2013 Dec 31 | 1945-1400 | 24443681 |
| MANDIBULAR ASYMMETRY CHARACTERIZATION USING GENERALIZED TENSOR-BASED MORPHOMETRY. | Paniagua, Beatriz; Alhadidi, Abeer; Cevidanes, Lucia; Styner, Martin; Oguz, Ipek | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging. | 2011 Dec 31; | 1175-1178 | 24443671 |
| Word sense disambiguation in the clinical domain: a comparison of knowledge-rich and knowledge-poor unsupervised methods. | Chasin, Rachel; Rumshisky, Anna; Uzuner, Ozlem; Szolovits, Peter | Journal of the American Medical Informatics Association : JAMIA | 2014 Jan 17 | NULL | 24441986 |
| ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state. | Chudnovsky, Yakov; Kim, Dohoon; Zheng, Siyuan; Whyte, Warren A; Bansal, Mukesh; Bray, Mark-Anthony; Gopal, Shuba; Theisen, Matthew A; Bilodeau, Steve; Thiru, Prathapan; Muffat, Julien; Yilmaz, Omer H; Mitalipova, Maya; Woolard, Kevin; Lee, Jeongwu; Nishim | Cell reports | 2014 Jan 30 | 313-24 | 24440720 |
| Resampling Procedures for Making Inference under Nested Case-control Studies. | Cai, Tianxi; Zheng, Yingye | Journal of the American Statistical Association | 2013 Jan 1 | 1532-1544 | 24436503 |
| Automatic lymphoma classification with sentence subgraph mining from pathology reports. | Luo, Yuan; Sohani, Aliyah R; Hochberg, Ephraim P; Szolovits, Peter | Journal of the American Medical Informatics Association : JAMIA. | 2014 Sep-Oct; | 824-32 | 24431333 |
| Regional neuroplastic brain changes in patients with chronic inflammatory and non-inflammatory visceral pain. | Hong, Jui-Yang; Labus, Jennifer S; Jiang, Zhiguo; Ashe-Mcnalley, Cody; Dinov, Ivo; Gupta, Arpana; Shi, Yonggang; Stains, Jean; Heendeniya, Nuwanthi; Smith, Suzanne R; Tillisch, Kirsten; Mayer, Emeran A | PloS one | 2014 | e84564 | 24416245 |
| A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies. | Pouchard, Line C; Branstetter, Marcia L; Cook, Robert B; Devarakonda, Ranjeet; Green, Jim; Palanisamy, Giri; Alexander, Paul; Noy, Natalya F | Earth science informatics | 2013 Sep | NULL | 24416086 |
| A midas plugin to enable construction of reproducible web-based image processing pipelines. | Grauer, Michael; Reynolds, Patrick; Hoogstoel, Marion; Budin, Francois; Styner, Martin A; Oguz, Ipek | Frontiers in neuroinformatics | 2013 | 46 | 24416016 |
| The EBI RDF platform: linked open data for the life sciences. | Jupp, Simon; Malone, James; Bolleman, Jerven; Brandizi, Marco; Davies, Mark; Garcia, Leyla; Gaulton, Anna; Gehant, Sebastien; Laibe, Camille; Redaschi, Nicole; Wimalaratne, Sarala M; Martin, Maria; Le Novere, Nicolas; Parkinson, Helen; Birney, Ewan; Jenki | Bioinformatics (Oxford, England) | 2014 May 1 | 1338-9 | 24413672 |
| Differential-Private Data Publishing Through Component Analysis. | Jiang, Xiaoqian; Ji, Zhanglong; Wang, Shuang; Mohammed, Noman; Cheng, Samuel; Ohno-Machado, Lucila | Transactions on data privacy | 2013 Apr | 19-34 | 24409205 |
| UNC-Utah NA-MIC framework for DTI fiber tract analysis. | Verde, Audrey R; Budin, Francois; Berger, Jean-Baptiste; Gupta, Aditya; Farzinfar, Mahshid; Kaiser, Adrien; Ahn, Mihye; Johnson, Hans; Matsui, Joy; Hazlett, Heather C; Sharma, Anuja; Goodlett, Casey; Shi, Yundi; Gouttard, Sylvain; Vachet, Clement; Piven, Joseph; Zhu, Hongtu; Gerig, Guido; Styner, Martin | Frontiers in neuroinformatics. | 2014; | 24409141 | |
| Serum inflammatory markers and risk of colorectal cancer in patients with inflammatory bowel diseases. | Ananthakrishnan, Ashwin N; Cheng, Su-Chun; Cai, Tianxi; Cagan, Andrew; Gainer, Vivian S; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine P | Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. | 2014 Aug; | 1342-8.e1 | 24407106 |
| A framework for longitudinal data analysis via shape regression. | Fishbaugh, James; Durrleman, Stanley; Piven, Joseph; Gerig, Guido | Proceedings of SPIE | 2012 Feb 23 | NULL | 24392201 |
| Fast approximate surface evolution in arbitrary dimension. | Malcolm, James; Rathi, Yogesh; Yezzi, Anthony; Tannenbaum, Allen | Proceedings of SPIE | 2008 Mar 11 | NULL | 24392194 |
| Tissue Tracking: Applications for Brain MRI Classification. | Melonakos, John; Gao, Yi; Tannenbaum, Allen | Proceedings of SPIE | 2007 Mar 3 | NULL | 24392193 |
| UNC-Utah NA-MIC DTI framework: Atlas Based Fiber Tract Analysis with Application to a Study of Nicotine Smoking Addiction. | Verde, Audrey R; Berger, Jean-Baptiste; Gupta, Aditya; Farzinfar, Mahshid; Kaiser, Adrien; Chanon, Vicki W; Boettiger, Charlotte; Goodlett, Casey; Shi, Yundi; Zhu, Hongtu; Gerig, Guido; Gouttard, Sylvain; Vachet, Clement; Styner, Martin | Proceedings of SPIE | 2013 Mar 13 | NULL | 24386543 |
| Studying PubMed usages in the field for complex problem solving: Implications for tool design. | Mirel, Barbara; Song, Jean; Tonks, Jennifer Steiner; Meng, Fan; Xuan, Weijian; Ameziane, Rafiqa | Journal of the American Society for Information Science and Technology : JASIST | 2013 May 1 | NULL | 24376375 |
| iPSC-derived neurons as a higher-throughput readout for autism: promises and pitfalls. | Prilutsky, Daria; Palmer, Nathan P; Smedemark-Margulies, Niklas; Schlaeger, Thorsten M; Margulies, David M; Kohane, Isaac S | Trends in molecular medicine | 2014 Feb | 91-104 | 24374161 |
| The long noncoding RNA THRIL regulates TNF* expression through its interaction with hnRNPL. | Li, Zhonghan; Chao, Ti-Chun; Chang, Kung-Yen; Lin, Nianwei; Patil, Veena S; Shimizu, Chisato; Head, Steven R; Burns, Jane C; Rana, Tariq M | Proceedings of the National Academy of Sciences of the United States of America | 2014 Jan 21 | 1002-7 | 24371310 |
| HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads. | Li, Pinghao; Jiang, Xiaoqian; Wang, Shuang; Kim, Jihoon; Xiong, Hongkai; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2014 Mar-Apr | 363-73 | 24368726 |
| Atrial fibrillation ablation outcome is predicted by left atrial remodeling on MRI. | McGann, Christopher; Akoum, Nazem; Patel, Amit; Kholmovski, Eugene; Revelo, Patricia; Damal, Kavitha; Wilson, Brent; Cates, Josh; Harrison, Alexis; Ranjan, Ravi; Burgon, Nathan S; Greene, Tom; Kim, Dan; Dibella, Edward V R; Parker, Dennis; Macleod, Rob S; | Circulation. Arrhythmia and electrophysiology | 2014 Feb | 23-30 | 24363354 |
| Cortical Correspondence via Sulcal Curve-Constrained Spherical Registration with Application to Macaque Studies. | Lyu, Ilwoo; Kim, Sun Hyung; Seong, Joon-Kyung; Yoo, Sang Wook; Evans, Alan C; Shi, Yundi; Sanchez, Mar; Niethammer, Marc; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2013 Mar 13 | NULL | 24357916 |
| Stochastic Image Registration with User Constraints. | Kolesov, Ivan; Lee, Jehoon; Vela, Patricio; Tannenbaum, Allen | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2013 Mar 13 | NULL | 24357915 |
| Software-based Diffusion MR Human Brain Phantom for Evaluating Fiber-tracking Algorithms. | Shi, Yundi; Roger, Gwendoline; Vachet, Clement; Budin, Francois; Maltbie, Eric; Verde, Audrey; Hoogstoel, Marion; Berger, Jean-Baptiste; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2013 Mar 13 | NULL | 24357914 |
| Fiber feature map based landmark initialization for highly deformable DTI registration. | Gupta, Aditya; Toews, Matthew; Janardhana, Ravikiran; Rathi, Yogesh; Gilmore, John; Escolar, Maria; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2013 Mar 13 | NULL | 24353392 |
| Measures for Validation of DTI Tractography. | Gouttard, Sylvain; Goodlett, Casey B; Kubicki, Marek; Gerig, Guido | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2012 Feb 23 | NULL | 24353381 |
| Quality Control of Diffusion Weighted Images. | Liu, Zhexing; Wang, Yi; Gerig, Guido; Gouttard, Sylvain; Tao, Ran; Fletcher, Thomas; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2010 Mar 11 | NULL | 24353379 |
| Changes of MR and DTI appearance in early human brain development. | Marc, Cassian; Vachet, Clement; Gerig, Guido; Blocher, Joseph; Gilmore, John; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2010 Mar 12 | NULL | 24353378 |
| Evaluation of DTI Property Maps as Basis of DTI Atlas Building. | Liu, Zhexing; Goodlett, Casey; Gerig, Guido; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2010 Mar 12 | NULL | 24353377 |
| Towards Analysis of Growth Trajectory through Multi-modal Longitudinal MR Imaging. | Sadeghi, Neda; Prastawa, Marcel; Gilmore, John H; Lin, Weili; Gerig, Guido | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2010 Mar 12 | NULL | 24353376 |
| Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways. | Kohlhoff, Kai J; Shukla, Diwakar; Lawrenz, Morgan; Bowman, Gregory R; Konerding, David E; Belov, Dan; Altman, Russ B; Pande, Vijay S | Nature chemistry | 2014 Jan | 15-21 | 24345941 |
| The environment ontology: contextualising biological and biomedical entities. | Buttigieg, Pier Luigi; Morrison, Norman; Smith, Barry; Mungall, Christopher J; Lewis, Suzanna E; ENVO Consortium | Journal of biomedical semantics | 2013 | 43 | 24330602 |
| Omnibus risk assessment via accelerated failure time kernel machine modeling. | Sinnott, Jennifer A; Cai, Tianxi | Biometrics | 2013 Dec | 861-73 | 24328713 |
| Treatment response in kawasaki disease is associated with sialylation levels of endogenous but not therapeutic intravenous immunoglobulin G. | Ogata, Shohei; Shimizu, Chisato; Franco, Alessandra; Touma, Ranim; Kanegaye, John T; Choudhury, Biswa P; Naidu, Natasha N; Kanda, Yutaka; Hoang, Long T; Hibberd, Martin L; Tremoulet, Adriana H; Varki, Ajit; Burns, Jane C | PloS one | 2013 | e81448 | 24324693 |
| Comorbidity clusters in autism spectrum disorders: an electronic health record time-series analysis. | Doshi-Velez, Finale; Ge, Yaorong; Kohane, Isaac | Pediatrics. | 2014 Jan; | 24323995 | |
| Mining the ultimate phenome repository. | Shah, Nigam H | Nature biotechnology. | 2013 Dec; | 1095-7 | 24316646 |
| The neurological disease ontology. | Jensen, Mark; Cox, Alexander P; Chaudhry, Naveed; Ng, Marcus; Sule, Donat; Duncan, William; Ray, Patrick; Weinstock-Guttman, Bianca; Smith, Barry; Ruttenberg, Alan; Szigeti, Kinga; Diehl, Alexander D | Journal of biomedical semantics | 2013 | 42 | 24314207 |
| Discussion of ''Biomedical informatics: we are what we publish''. | Geissbuhler, A; Hammond, W E; Hasman, A; Hussein, R; Koppel, R; Kulikowski, C A; Maojo, V; Martin-Sanchez, F; Moorman, P W; Moura, L A; de Quirós, F G B; Schuemie, M J; Smith, B; Talmon, J | Methods of information in medicine. | 2013; | 24310397 | |
| Amplification and thrifty single-molecule sequencing of recurrent somatic structural variations. | Patel, Anand; Schwab, Richard; Liu, Yu-Tsueng; Bafna, Vineet | Genome research | 2014 Feb | 318-28 | 24307551 |
| Genome-wide DNA methylation changes with age in disease free human skeletal muscle. | Zykovich, Artem; Hubbard, Alan; Flynn, James M; Tarnopolsky, Mark; Fraga, Mario F; Kerksick, Chad; Ogborn, Dan; Macneil, Lauren; Mooney, Sean D; Melov, Simon | Aging cell | 2013 Nov 7 | NULL | 24304487 |
| Calculations of the electric fields in liquid solutions. | Fried, Stephen D; Wang, Lee-Ping; Boxer, Steven G; Ren, Pengyu; Pande, Vijay S | The journal of physical chemistry. B | 2013 Dec 19 | 16236-48 | 24304155 |
| Learning signals of adverse drug-drug interactions from the unstructured text of electronic health records. | Iyer, Srinivasan V; Lependu, Paea; Harpaz, Rave; Bauer-Mehren, Anna; Shah, Nigam H | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2013; | 24303305 | |
| Network analysis of unstructured EHR data for clinical research. | Bauer-Mehren, Anna; Lependu, Paea; Iyer, Srinivasan V; Harpaz, Rave; Leeper, Nicholas J; Shah, Nigam H | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2013; | 24303229 | |
| Profiling risk factors for chronic uveitis in juvenile idiopathic arthritis: a new model for EHR-based research. | Cole, Tyler S; Frankovich, Jennifer; Iyer, Srinivasan; Lependu, Paea; Bauer-Mehren, Anna; Shah, Nigam H | Pediatric rheumatology online journal | 2013 | 45 | 24299016 |
| Impact of type 2 diabetes susceptibility variants on quantitative glycemic traits reveals mechanistic heterogeneity. | Dimas, Antigone S; Lagou, Vasiliki; Barker, Adam; Knowles, Joshua W; Magi, Reedik; Hivert, Marie-France; Benazzo, Andrea; Rybin, Denis; Jackson, Anne U; Stringham, Heather M; Song, Ci; Fischer-Rosinsky, Antje; Boesgaard, Trine Wellov; Grarup, Niels; Abbas | Diabetes. | 2014 Jun; | 2158-71 | 24296717 |
| Associations of smoking and alcohol consumption with disease activity and functional status in rheumatoid arthritis. | Lu, Bing; Rho, Young Hee; Cui, Jing; Iannaccone, Christine K; Frits, Michelle L; Karlson, Elizabeth W; Shadick, Nancy A | The Journal of rheumatology | 2014 Jan | 24-30 | 24293566 |
| Predicting the restricted mean event time with the subject's baseline covariates in survival analysis. | Tian, Lu; Zhao, Lihui; Wei, L J | Biostatistics (Oxford, England) | 2014 Apr | 222-33 | 24292992 |
| Direct reversal of glucocorticoid resistance by AKT inhibition in acute lymphoblastic leukemia. | Piovan, Erich; Yu, Jiyang; Tosello, Valeria; Herranz, Daniel; Ambesi-Impiombato, Alberto; Da Silva, Ana Carolina; Sanchez-Martin, Marta; Perez-Garcia, Arianne; Rigo, Isaura; Castillo, Mireia; Indraccolo, Stefano; Cross, Justin R; de Stanchina, Elisa; Paie | Cancer cell | 2013 Dec 9 | 766-76 | 24291004 |
| SCISSORS: Practical Considerations. | Kearnes, Steven M; Haque, Imran S; Pande, Vijay S | Journal of chemical information and modeling | 2013 Dec 16 | NULL | 24289274 |
| Genetic robustness and functional evolution of gene duplicates. | Plata, German; Vitkup, Dennis | Nucleic acids research | 2014 Feb | 2405-14 | 24288370 |
| Three-dimensional treatment outcomes in Class II patients treated with the Herbst appliance: a pilot study. | LeCornu, Megan; Cevidanes, Lucia H S; Zhu, Hongtu; Wu, Chih-Da; Larson, Brent; Nguyen, Tung | American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics. | 2013 Dec; | 818-30 | 24286905 |
| Chronology of your health events: approaches to extracting temporal relations from medical narratives. | Uzuner, Ozlem; Stubbs, Amber; Sun, Weiyi | Journal of biomedical informatics | 2013 Dec | S1-4 | 24286753 |
| DNA-COMPACT: DNA COMpression based on a pattern-aware contextual modeling technique. | Li, Pinghao; Wang, Shuang; Kim, Jihoon; Xiong, Hongkai; Ohno-Machado, Lucila; Jiang, Xiaoqian | PloS one | 2013 | e80377 | 24282536 |
| Gene Expression Data to Mouse Atlas Registration Using a Nonlinear Elasticity Smoother and Landmark Points Constraints. | Lin, Tungyou; Guyader, Carole Le; Dinov, Ivo; Thompson, Paul; Toga, Arthur; Vese, Luminita | Journal of scientific computing | 2012 Mar | NULL | 24273381 |
| OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites. | Shazman, Shula; Lee, Hunjoong; Socol, Yakov; Mann, Richard S; Honig, Barry | Nucleic acids research | 2014 Jan 1 | D167-71 | 24271386 |
| SGPP: spatial Gaussian predictive process models for neuroimaging data. | Hyun, Jung Won; Li, Yimei; Gilmore, John H; Lu, Zhaohua; Styner, Martin; Zhu, Hongtu | NeuroImage | 2014 Apr 1 | 70-80 | 24269800 |
| State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project. | Farrah, Terry; Deutsch, Eric W; Omenn, Gilbert S; Sun, Zhi; Watts, Julian D; Yamamoto, Tadashi; Shteynberg, David; Harris, Micheleen M; Moritz, Robert L | Journal of proteome research | 2014 Jan 3 | 60-75 | 24261998 |
| Reviewing the ketamine model for schizophrenia. | Frohlich, Joel; Van Horn, John D | Journal of psychopharmacology (Oxford, England) | 2014 Apr | 287-302 | 24257811 |
| Modeling disease severity in multiple sclerosis using electronic health records. | Xia, Zongqi; Secor, Elizabeth; Chibnik, Lori B; Bove, Riley M; Cheng, Suchun; Chitnis, Tanuja; Cagan, Andrew; Gainer, Vivian S; Chen, Pei J; Liao, Katherine P; Shaw, Stanley Y; Ananthakrishnan, Ashwin N; Szolovits, Peter; Weiner, Howard L; Karlson, Elizab | PloS one | 2013 | e78927 | 24244385 |
| Growing matter: a review of growth in living systems. | Kuhl, Ellen | Journal of the mechanical behavior of biomedical materials | 2014 Jan | 529-43 | 24239171 |
| Predictors of plasma and urinary catecholamine levels in normotensive and hypertensive men and women. | Saxena, A R; Chamarthi, B; Williams, G H; Hopkins, P N; Seely, E W | Journal of human hypertension. | 2014 May; | 292-7 | 24226101 |
| SWEETLEAD: an in silico database of approved drugs, regulated chemicals, and herbal isolates for computer-aided drug discovery. | Novick, Paul A; Ortiz, Oscar F; Poelman, Jared; Abdulhay, Amir Y; Pande, Vijay S | PloS one | 2013 | e79568 | 24223973 |
| Recent trends in biomedical informatics: a study based on JAMIA articles. | Jiang, Xiaoqian; Tse, Krystal; Wang, Shuang; Doan, Son; Kim, Hyeoneui; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2013 Dec | e198-205 | 24214018 |
| Towards generating a patient's timeline: extracting temporal relationships from clinical notes. | Nikfarjam, Azadeh; Emadzadeh, Ehsan; Gonzalez, Graciela | Journal of biomedical informatics | 2013 Dec | S40-7 | 24212118 |
| Improved segmentation of white matter tracts with adaptive Riemannian metrics. | Hao, Xiang; Zygmunt, Kristen; Whitaker, Ross T; Fletcher, P Thomas | Medical image analysis | 2014 Jan | 161-75 | 24211814 |
| In silico approaches and the role of ontologies in aging research. | Fuellen, Georg; Boerries, Melanie; Busch, Hauke; de Grey, Aubrey; Hahn, Udo; Hiller, Thomas; Hoeflich, Andreas; Jansen, Ludger; Janssens, Georges E; Kaleta, Christoph; Meinema, Anne C; Schauble, Sascha; Simm, Andreas; Schofield, Paul N; Smith, Barry; Suhn | Rejuvenation research | 2013 Dec | 540-6 | 24188080 |
| Using search queries for malaria surveillance, Thailand. | Ocampo, Alex J; Chunara, Rumi; Brownstein, John S | Malaria journal | 2013 | 390 | 24188069 |
| Cumulative haploinsufficiency and triplosensitivity drive aneuploidy patterns and shape the cancer genome. | Davoli, Teresa; Xu, Andrew Wei; Mengwasser, Kristen E; Sack, Laura M; Yoon, John C; Park, Peter J; Elledge, Stephen J | Cell | 2013 Nov 7 | 948-62 | 24183448 |
| Three-dimensional analysis of maxillary changes associated with facemask and rapid maxillary expansion compared with bone anchored maxillary protraction. | Hino, Claudia Toyama; Cevidanes, Lucia H S; Nguyen, Tung T; De Clerck, Hugo J; Franchi, Lorenzo; McNamara Jr, James A | American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics. | 2013 Nov; | 705-14 | 24182587 |
| Neuroimaging of structural pathology and connectomics in traumatic brain injury: Toward personalized outcome prediction. | Irimia, Andrei; Wang, Bo; Aylward, Stephen R; Prastawa, Marcel W; Pace, Danielle F; Gerig, Guido; Hovda, David A; Kikinis, Ron; Vespa, Paul M; Van Horn, John D | NeuroImage. Clinical. | 2012; | 24179732 | |
| Topology of viral evolution. | Chan, Joseph Minhow; Carlsson, Gunnar; Rabadan, Raul | Proceedings of the National Academy of Sciences of the United States of America | 2013 Nov 12 | 18566-71 | 24170857 |
| Regional 3D superimposition to assess temporomandibular joint condylar morphology. | Schilling, J; Gomes, L C R; Benavides, E; Nguyen, T; Paniagua, B; Styner, M; Boen, V; Goncalves, J R; Cevidanes, L H S | Dento maxillo facial radiology. | 2014; | 20130273 | 24170802 |
| Leveraging electronic health records to notify pediatric patients of a drug recall. | Mendelson, Michael M; Zachariah, Justin P; de Ferranti, Sarah D; Bickel, Jonathan P | JAMA pediatrics | 2013 Dec | 1170-1 | 24165895 |
| Association Between Reduced Plasma 25-Hydroxy Vitamin D and Increased Risk of Cancer in Patients With Inflammatory Bowel Diseases. | Ananthakrishnan, Ashwin N; Cheng, Su-Chun; Cai, Tianxi; Cagan, Andrew; Gainer, Vivian S; Szolovits, Peter; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Murphy, Shawn N; Kohane, Isaac; Liao, Katherine P | Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association | 2013 Oct 23 | NULL | 24161349 |
| Mining clinical text for signals of adverse drug-drug interactions. | Iyer, Srinivasan V; Harpaz, Rave; LePendu, Paea; Bauer-Mehren, Anna; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 2014 Mar-Apr | 353-62 | 24158091 |
| Application of universal stress proteins in probing the dynamics of potent degraders in complex terephthalate metagenome. | Mbah, Andreas N; Isokpehi, Raphael D | BioMed research international | 2013 | 196409 | 24151583 |
| Automated chart review for asthma cohort identification using natural language processing: an exploratory study. | Wu, Stephen T; Sohn, Sunghwan; Ravikumar, K E; Wagholikar, Kavishwar; Jonnalagadda, Siddhartha R; Liu, Hongfang; Juhn, Young J | Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology | 2013 Nov | 364-9 | 24125142 |
| Nocturnal continuous glucose and sleep stage data in adults with type 1 diabetes in real-world conditions. | Feupe, Stephanie Feudjio; Frias, Patrick F; Mednick, Sara C; McDevitt, Elizabeth A; Heintzman, Nathaniel D | Journal of diabetes science and technology | 2013 Sep | 1337-45 | 24124962 |
| Human neuroimaging as a "Big Data" science. | Van Horn, John Darrell; Toga, Arthur W | Brain imaging and behavior | 2013 Oct 10 | NULL | 24113873 |
| Distinct splice variants and pathway enrichment in the cell-line models of aggressive human breast cancer subtypes. | Menon, Rajasree; Im, Hogune; Zhang, Emma Yue; Wu, Shiaw-Lin; Chen, Rui; Snyder, Michael; Hancock, William S; Omenn, Gilbert S | Journal of proteome research | 2014 Jan 3 | 212-27 | 24111759 |
| Localized Sparse Code Gradient in Alzheimer's disease staging. | Liu, Sidong; Cai, Weidong; Song, Yang; Pujol, Sonia; Kikinis, Ron; Wen, Lingfeng; Feng, David Dagan | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference | 2013 | 5398-401 | 24110956 |
| Nucleotide sequence alignment using sparse coding and belief propagation. | Roozgard, Aminmohammad; Barzigar, Nafise; Wang, Shuang; Jiang, Xiaoqian; Ohno-Machado, Lucila; Cheng, Samuel | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2013 | 588-91 | 24109755 |
| Cross-domain targeted ontology subsets for annotation: The case of SNOMED CORE and RxNorm. | Lopez-Garcia, Pablo; Lependu, Paea; Musen, Mark; Illarramendi, Arantza | Journal of biomedical informatics | 2013 Oct 1 | NULL | 24095962 |
| Discovering body site and severity modifiers in clinical texts. | Dligach, Dmitriy; Bethard, Steven; Becker, Lee; Miller, Timothy; Savova, Guergana K | Journal of the American Medical Informatics Association : JAMIA | 2014 May-Jun | 448-54 | 24091648 |
| Improved de-identification of physician notes through integrative modeling of both public and private medical text. | McMurry, Andrew J; Fitch, Britt; Savova, Guergana; Kohane, Isaac S; Reis, Ben Y | BMC medical informatics and decision making | 2013 | 112 | 24083569 |
| Temporal relation discovery between events and temporal expressions identified in clinical narrative. | Cheng, Yao; Anick, Peter; Hong, Pengyu; Xue, Nianwen | Journal of biomedical informatics | 2013 Dec | S48-53 | 24076508 |
| FMEM: functional mixed effects modeling for the analysis of longitudinal white matter Tract data. | Yuan, Ying; Gilmore, John H; Geng, Xiujuan; Martin, Styner; Chen, Kehui; Wang, Jane-ling; Zhu, Hongtu | NeuroImage | 2014 Jan 1 | 753-64 | 24076225 |
| A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk. | Blair, David R; Lyttle, Christopher S; Mortensen, Jonathan M; Bearden, Charles F; Jensen, Anders Boeck; Khiabanian, Hossein; Melamed, Rachel; Rabadan, Raul; Bernstam, Elmer V; Brunak, Soren; Jensen, Lars Juhl; Nicolae, Dan; Shah, Nigam H; Grossman, Robert | Cell | 2013 Sep 26 | 70-80 | 24074861 |
| Neural encoding of acupuncture needling sensations: evidence from a FMRI study. | Wang, Xiaoling; Chan, Suk-Tak; Fang, Jiliang; Nixon, Erika E; Liu, Jing; Kwong, Kenneth K; Rosen, Bruce R; Hui, Kathleen K S | Evidence-based complementary and alternative medicine : eCAM. | 2013; | 24062782 | |
| TEMPTING system: a hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries. | Chang, Yung-Chun; Dai, Hong-Jie; Wu, Johnny Chi-Yang; Chen, Jian-Ming; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | Journal of biomedical informatics | 2013 Dec | S54-62 | 24060600 |
| Seasonality of Kawasaki disease: a global perspective. | Burns, Jane C; Herzog, Lauren; Fabri, Olivia; Tremoulet, Adriana H; Rodo, Xavier; Uehara, Ritei; Burgner, David; Bainto, Emelia; Pierce, David; Tyree, Mary; Cayan, Daniel; Kawasaki Disease Global Climate Consortium | PloS one | 2013 | e74529 | 24058585 |
| Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. | Tustison, Nicholas J; Johnson, Hans J; Rohlfing, Torsten; Klein, Arno; Ghosh, Satrajit S; Ibanez, Luis; Avants, Brian B | Frontiers in neuroscience. | 2013; | 162 | 24058331 |
| Particle Filters and Occlusion Handling for Rigid 2D-3D Pose Tracking. | Lee, Jehoon; Sandhu, Romeil; Tannenbaum, Allen | Computer vision and image understanding : CVIU | 2013 Aug 1 | 922-933 | 24058277 |
| EFFECTIVELY SELECTING A TARGET POPULATION FOR A FUTURE COMPARATIVE STUDY. | Zhao, Lihui; Tian, Lu; Cai, Tianxi; Claggett, Brian; Wei, L J | Journal of the American Statistical Association | 2013 Jan 1 | 527-539 | 24058223 |
| Automatic segmentation of the left atrium from MR images via variational region growing with a moments-based shape prior. | Zhu, Liangjia; Gao, Yi; Yezzi, Anthony; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 2013 Dec | 5111-22 | 24058026 |
| Combining an expert-based medical entity recognizer to a machine-learning system: methods and a case study. | Zweigenbaum, Pierre; Lavergne, Thomas; Grabar, Natalia; Hamon, Thierry; Rosset, Sophie; Grouin, Cyril | Biomedical informatics insights. | 2013; | 24052691 | |
| Opportunities for genomic clinical decision support interventions. | Overby, Casey Lynnette; Kohane, Isaac; Kannry, Joseph L; Williams, Marc S; Starren, Justin; Bottinger, Erwin; Gottesman, Omri; Denny, Joshua C; Weng, Chunhua; Tarczy-Hornoch, Peter; Hripcsak, George | Genetics in medicine : official journal of the American College of Medical Genetics | 2013 Oct | 817-23 | 24051479 |
| A novel strategy to identify the critical conditions for growth-induced instabilities. | Javili, A; Steinmann, P; Kuhl, E | Journal of the mechanical behavior of biomedical materials | 2014 Jan | 20-32 | 24041754 |
| Temporomandibular joint condylar changes following maxillomandibular advancement and articular disc repositioning. | Goncalves, Joao Roberto; Wolford, Larry Miller; Cassano, Daniel Serra; da Porciuncula, Guilherme; Paniagua, Beatriz; Cevidanes, Lucia Helena | Journal of oral and maxillofacial surgery : official journal of the American Association of Oral and Maxillofacial Surgeons. | 2013 Oct; | 1759.e1-15 | 24040949 |
| Sex-related differences of cortical thickness in patients with chronic abdominal pain. | Jiang, Zhiguo; Dinov, Ivo D; Labus, Jennifer; Shi, Yonggang; Zamanyan, Alen; Gupta, Arpana; Ashe-McNalley, Cody; Hong, Jui-Yang; Tillisch, Kirsten; Toga, Arthur W; Mayer, Emeran A | PloS one | 2013 | e73932 | 24040118 |
| On the design of clone-based haplotyping. | Lo, Christine; Liu, Rui; Lee, Jehyuk; Robasky, Kimberly; Byrne, Susan; Lucchesi, Carolina; Aach, John; Church, George; Bafna, Vineet; Zhang, Kun | Genome biology. | 2013; | R100 | 24028704 |
| Combined SPHARM-PDM and entropy-based particle systems shape analysis framework. | Paniagua, Beatriz; Bompard, Lucile; Cates, Josh; Whitaker, Ross; Datar, Manasi; Vachet, Clement; Styner, Martin | Proceedings of SPIE--the International Society for Optical Engineering. | 2012 Mar 23; | 24027625 | |
| A molecular signature predictive of indolent prostate cancer. | Irshad, Shazia; Bansal, Mukesh; Castillo-Martin, Mireia; Zheng, Tian; Aytes, Alvaro; Wenske, Sven; Le Magnen, Clementine; Guarnieri, Paolo; Sumazin, Pavel; Benson, Mitchell C; Shen, Michael M; Califano, Andrea; Abate-Shen, Cory | Science translational medicine | 2013 Sep 11 | 202ra122 | 24027026 |
| Extraction of events and temporal expressions from clinical narratives. | Jindal, Prateek; Roth, Dan | Journal of biomedical informatics | 2013 Dec | S13-9 | 24022023 |
| Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes. | Simon, Marissa; Bruex, Angela; Kainkaryam, Raghunandan M; Zheng, Xiaohua; Huang, Ling; Woolf, Peter J; Schiefelbein, John | The Plant cell | 2013 Sep | 3175-85 | 24014549 |
| Assessment of biomarkers for risk prediction with nested case-control studies. | Zhou, Qian M; Zheng, Yingye; Cai, Tianxi | Clinical trials (London, England) | 2013 Oct | 677-9 | 24013405 |
| Electroencephalographic inverse localization of brain activity in acute traumatic brain injury as a guide to surgery, monitoring and treatment. | Irimia, Andrei; Goh, S-Y Matthew; Torgerson, Carinna M; Stein, Nathan R; Chambers, Micah C; Vespa, Paul M; Van Horn, John D | Clinical neurology and neurosurgery | 2013 Oct | 2159-65 | 24011495 |
| Faceted Visualization of Three Dimensional Neuroanatomy By Combining Ontology with Faceted Search. | Veeraraghavan, Harini; Miller, James V | Neuroinformatics | 2013 Sep 5 | NULL | 24006207 |
| A new tool for sharing and querying of clinical documents modeled using HL7 Version 3 standard. | Slavov, Vasil; Rao, Praveen; Paturi, Srivenu; Swami, Tivakar Komara; Barnes, Michael; Rao, Deepthi; Palvai, Raghuvarun | Computer methods and programs in biomedicine | 2013 Dec | 529-52 | 24001923 |
| Stopping Criteria for Log-Domain Diffeomorphic Demons Registration: An Experimental Survey for Radiotherapy Application. | Peroni, M; Golland, P; Sharp, G C; Baroni, G | Technology in cancer research & treatment. | 2016 Feb; | 24000996 | |
| Prostate cancer detection and diagnosis: the role of MR and its comparison with other diagnostic modalities--a radiologist's perspective. | Penzkofer, Tobias; Tempany-Afdhal, Clare M | NMR in biomedicine | 2014 Jan | 15-Mar | 24000133 |
| SEGMENTATION OF SERIAL MRI OF TBI PATIENTS USING PERSONALIZED ATLAS CONSTRUCTION AND TOPOLOGICAL CHANGE ESTIMATION. | Wang, Bo; Prastawa, Marcel; Awate, Suyash P; Irimia, Andrei; Chambers, Micah C; Vespa, Paul M; van Horn, John D; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2012 | 1152-1155 | 23999192 |
| STATISTICAL GROWTH MODELING OF LONGITUDINAL DT-MRI FOR REGIONAL CHARACTERIZATION OF EARLY BRAIN DEVELOPMENT. | Sadeghi, Neda; Prastawa, Marcel; Fletcher, P Thomas; Gilmore, John H; Lin, Weili; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2012 | 1507-1510 | 23999084 |
| Automated skin segmentation in ultrasonic evaluation of skin toxicity in breast cancer radiotherapy. | Gao, Yi; Tannenbaum, Allen; Chen, Hao; Torres, Mylin; Yoshida, Emi; Yang, Xiaofeng; Wang, Yuefeng; Curran, Walter; Liu, Tian | Ultrasound in medicine & biology. | 2013 Nov; | 2166-75 | 23993172 |
| Using twitter to examine smoking behavior and perceptions of emerging tobacco products. | Myslin, Mark; Zhu, Shu-Hong; Chapman, Wendy; Conway, Mike | Journal of medical Internet research | 2013 | e174 | 23989137 |
| PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. | Doan, Son; Lin, Ko-Wei; Conway, Mike; Ohno-Machado, Lucila; Hsieh, Alex; Feupe, Stephanie Feudjio; Garland, Asher; Ross, Mindy K; Jiang, Xiaoqian; Farzaneh, Seena; Walker, Rebecca; Alipanah, Neda; Zhang, Jing; Xu, Hua; Kim, Hyeon-Eui | Journal of the American Medical Informatics Association : JAMIA | 2014 Jan-Feb | 31-6 | 23989082 |
| Virmid: accurate detection of somatic mutations with sample impurity inference. | Kim, Sangwoo; Jeong, Kyowon; Bhutani, Kunal; Lee, Jeong; Patel, Anand; Scott, Eric; Nam, Hojung; Lee, Hayan; Gleeson, Joseph G; Bafna, Vineet | Genome biology. | 2013; | R90 | 23987214 |
| Identification of Functional Regulatory Residues of the ? -Lactam Inducible Penicillin Binding Protein in Methicillin-Resistant Staphylococcus aureus. | Mbah, Andreas N; Isokpehi, Raphael D | Chemotherapy research and practice. | 2013; | 23984067 | |
| Automatic prediction of rheumatoid arthritis disease activity from the electronic medical records. | Lin, Chen; Karlson, Elizabeth W; Canhao, Helena; Miller, Timothy A; Dligach, Dmitriy; Chen, Pei Jun; Perez, Raul Natanael Guzman; Shen, Yuanyan; Weinblatt, Michael E; Shadick, Nancy A; Plenge, Robert M; Savova, Guergana K | PloS one | 2013 | e69932 | 23976944 |
| On the effect of prestrain and residual stress in thin biological membranes. | Rausch, Manuel K; Kuhl, Ellen | Journal of the mechanics and physics of solids | 2013 Sep 1 | 1955-1969 | 23976792 |
| Multimodal deformable registration of traumatic brain injury MR volumes via the Bhattacharyya distance. | Lou, Yifei; Irimia, Andrei; Vela, Patricio A; Chambers, Micah C; Van Horn, John D; Vespa, Paul M; Tannenbaum, Allen R | IEEE transactions on bio-medical engineering | 2013 Sep | 2511-20 | 23962986 |
| MULTIVARIATE MODELING OF LONGITUDINAL MRI IN EARLY BRAIN DEVELOPMENT WITH CONFIDENCE MEASURES. | Sadeghi, Neda; Prastawa, Marcel; Fletcher, P Thomas; Vachet, Clement; Wang, Bo; Gilmore, John; Gerig, Guido | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2013 | 1400-1403 | 23959506 |
| A NEW FRAMEWORK FOR ANALYZING WHITE MATTER MATURATION IN EARLY BRAIN DEVELOPMENT. | Prastawa, Marcel; Sadeghi, Neda; Gilmore, John H; Lin, Weili; Gerig, Guido | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2010; | 23959442 | |
| Toward a comprehensive framework for the spatiotemporal statistical analysis of longitudinal shape data. | Durrleman, S; Pennec, X; Trouve, A; Braga, J; Gerig, G; Ayache, N | International journal of computer vision. | 2013 May; | 22-59 | 23956495 |
| Identifying phenotypic signatures of neuropsychiatric disorders from electronic medical records. | Lyalina, Svetlana; Percha, Bethany; LePendu, Paea; Iyer, Srinivasan V; Altman, Russ B; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 2013 Dec | e297-305 | 23956017 |
| Classifying temporal relations in clinical data: A hybrid, knowledge-rich approach. | D'Souza, Jennifer; Ng, Vincent | Journal of biomedical informatics | 2013 Aug 14 | NULL | 23954311 |
| Whole-genome sequencing uncovers the genetic basis of chronic mountain sickness in Andean highlanders. | Zhou, Dan; Udpa, Nitin; Ronen, Roy; Stobdan, Tsering; Liang, Junbin; Appenzeller, Otto; Zhao, Huiwen W; Yin, Yi; Du, Yuanping; Guo, Lixia; Cao, Rui; Wang, Yu; Jin, Xin; Huang, Chen; Jia, Wenlong; Cao, Dandan; Guo, Guangwu; Gamboa, Jorge L; Villafuerte, Fr | American journal of human genetics | 2013 Sep 5 | 452-62 | 23954164 |
| Mapping cortical atrophy in Parkinson's disease patients with dementia. | Hwang, Kristy S; Beyer, Mona K; Green, Amity E; Chung, Christine; Thompson, Paul M; Janvin, Carmen; Larsen, Jan P; Aarsland, Dag; Apostolova, Liana G | Journal of Parkinson's disease | 2013 | 69-76 | 23938313 |
| Lipid and lipoprotein levels and trend in rheumatoid arthritis compared to the general population. | Liao, Katherine P; Cai, Tianxi; Gainer, Vivian S; Cagan, Andrew; Murphy, Shawn N; Liu, Chihchin; Churchill, Susanne; Shaw, Stanley Y; Kohane, Isaac; Solomon, Daniel H; Plenge, Robert M; Karlson, Elizabeth W | Arthritis care & research | 2013 Dec | 2046-50 | 23925980 |
| Extending the NegEx lexicon for multiple languages. | Chapman, Wendy W; Hillert, Dieter; Velupillai, Sumithra; Kvist, Maria; Skeppstedt, Maria; Chapman, Brian E; Conway, Mike; Tharp, Melissa; Mowery, Danielle L; Deleger, Louise | Studies in health technology and informatics | 2013 | 677-81 | 23920642 |
| ETV4 promotes metastasis in response to activation of PI3-kinase and Ras signaling in a mouse model of advanced prostate cancer. | Aytes, Alvaro; Mitrofanova, Antonina; Kinkade, Carolyn Waugh; Lefebvre, Celine; Lei, Ming; Phelan, Vanessa; LeKaye, H Carl; Koutcher, Jason A; Cardiff, Robert D; Califano, Andrea; Shen, Michael M; Abate-Shen, Cory | Proceedings of the National Academy of Sciences of the United States of America | 2013 Sep 10 | E3506-15 | 23918374 |
| The integrated landscape of driver genomic alterations in glioblastoma. | Frattini, Veronique; Trifonov, Vladimir; Chan, Joseph Minhow; Castano, Angelica; Lia, Marie; Abate, Francesco; Keir, Stephen T; Ji, Alan X; Zoppoli, Pietro; Niola, Francesco; Danussi, Carla; Dolgalev, Igor; Porrati, Paola; Pellegatta, Serena; Heguy, Adria | Nature genetics | 2013 Aug 5 | NULL | 23917401 |
| Shape abnormalities of the caudate nucleus correlate with poorer gait and balance: results from a subset of the LADIS study. | Macfarlane, Matthew D; Looi, Jeffrey C L; Walterfang, Mark; Spulber, Gabriela; Velakoulis, Dennis; Styner, Martin; Crisby, Milita; Orndahl, Eva; Erkinjuntti, Timo; Waldemar, Gunhild; Garde, Ellen; Hennerici, Michael G; Bazner, Hansjorg; Blahak, Christian; | The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry. | 2015 Jan; | 59-71.e1 | 23916546 |
| Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice. | Parnell, Scott E; Holloway, Hunter T; O'Leary-Moore, Shonagh K; Dehart, Deborah B; Paniaqua, Beatriz; Oguz, Ipek; Budin, Francois; Styner, Martin A; Johnson, G Allan; Sulik, Kathleen K | Neurotoxicology and teratology | 2013 Sep-Oct | 77-83 | 23911654 |
| MedTime: a temporal information extraction system for clinical narratives. | Lin, Yu-Kai; Chen, Hsinchun; Brown, Randall A | Journal of biomedical informatics | 2013 Dec | S20-8 | 23911344 |
| PQM-1 Complements DAF-16 as a Key Transcriptional Regulator of DAF-2-Mediated Development and Longevity. | Tepper, Ronald G; Ashraf, Jasmine; Kaletsky, Rachel; Kleemann, Gunnar; Murphy, Coleen T; Bussemaker, Harmen J | Cell | 2013 Aug 1 | 676-90 | 23911329 |
| Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences. | Fan, Jung-wei; Yang, Elly W; Jiang, Min; Prasad, Rashmi; Loomis, Richard M; Zisook, Daniel S; Denny, Josh C; Xu, Hua; Huang, Yang | Journal of the American Medical Informatics Association : JAMIA | 2013 Nov-Dec | 1168-77 | 23907286 |
| Immune-monitoring in Kawasaki disease patients treated with infliximab and intravenous immunoglobulin. | Burns, J C; Song, Y; Bujold, M; Shimizu, C; Kanegaye, J T; Tremoulet, A H; Franco, A | Clinical and experimental immunology | 2013 Dec | 337-44 | 23901839 |
| A locally adaptive regularization based on anisotropic diffusion for deformable image registration of sliding organs. | Pace, Danielle F; Aylward, Stephen R; Niethammer, Marc | IEEE transactions on medical imaging | 2013 Nov | 2114-26 | 23899632 |
| Interactive medical image segmentation using PDE control of active contours. | Karasev, Peter; Kolesov, Ivan; Fritscher, Karl; Vela, Patricio; Mitchell, Phillip; Tannenbaum, Allen | IEEE transactions on medical imaging | 2013 Nov | 2127-39 | 23893712 |
| Localizing the human primary auditory cortex in vivo using structural MRI. | Wasserthal, Christian; Brechmann, Andre; Stadler, Jorg; Fischl, Bruce; Engel, Karin | NeuroImage | 2013 Jul 25 | NULL | 23891882 |
| CLASSIFYING PROCESSES: AN ESSAY IN APPLIED ONTOLOGY. | Smith, Barry | Ratio | 2012 Dec 1 | 463-488 | 23888086 |
| Fast local trust region technique for diffusion tensor registration using exact reorientation and regularization. | Li, Junning; Shi, Yonggang; Tran, Giang; Dinov, Ivo; Wang, Danny J J; Toga, Arthur | IEEE transactions on medical imaging. | 2014 May; | 1005-22 | 23880040 |
| Annotating temporal information in clinical narratives. | Sun, Weiyi; Rumshisky, Anna; Uzuner, Ozlem | Journal of biomedical informatics | 2013 Jul 19 | NULL | 23872518 |
| Semantator: Semantic annotator for converting biomedical text to linked data. | Tao, Cui; Song, Dezhao; Sharma, Deepak; Chute, Christopher G | Journal of biomedical informatics | 2013 Oct | 882-93 | 23867104 |
| From connectivity models to region labels: identifying foci of a neurological disorder. | Venkataraman, Archana; Kubicki, Marek; Golland, Polina | IEEE transactions on medical imaging | 2013 Nov | 2078-98 | 23864168 |
| Locally-Constrained Region-Based Methods for DW-MRI Segmentation. | Melonakos, John; Niethammer, Marc; Mohan, Vandana; Kubicki, Marek; Miller, James V; Tannenbaum, Allen | Proceedings / IEEE International Conference on Computer Vision. IEEE International Conference on Computer Vision | 2007 | 8-Jan | 23857521 |
| Computational semantics in clinical text. | Wu, Stephen | Biomedical informatics insights. | 2013; | 23847422 | |
| Longitudinal image registration with temporally-dependent image similarity measure. | Csapo, Istvan; Davis, Brad; Shi, Yundi; Sanchez, Mar; Styner, Martin; Niethammer, Marc | IEEE transactions on medical imaging | 2013 Oct | 1939-51 | 23846465 |
| Variants in exons and in transcription factors affect gene expression in trans. | Kreimer, Anat; Pe'er, Itsik | Genome biology. | 2013; | R71 | 23844908 |
| Ground state destabilization by anionic nucleophiles contributes to the activity of phosphoryl transfer enzymes. | Andrews, Logan D; Fenn, Tim D; Herschlag, Daniel | PLoS biology | 2013 Jul | e1001599 | 23843744 |
| DTI Quality Control Assessment via Error Estimation From Monte Carlo Simulations. | Farzinfar, Mahshid; Li, Yin; Verde, Audrey R; Oguz, Ipek; Gerig, Guido; Styner, Martin A | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2013 Mar 13 | 1667549 | 23833547 |
| Statistical shape modeling of cam femoroacetabular impingement. | Harris, Michael D; Datar, Manasi; Whitaker, Ross T; Jurrus, Elizabeth R; Peters, Christopher L; Anderson, Andrew E | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2013 Oct | 1620-6 | 23832798 |
| Unexpected effect of proton pump inhibitors: elevation of the cardiovascular risk factor asymmetric dimethylarginine. | Ghebremariam, Yohannes T; LePendu, Paea; Lee, Jerry C; Erlanson, Daniel A; Slaviero, Anna; Shah, Nigam H; Leiper, James; Cooke, John P | Circulation | 2013 Aug 20 | 845-53 | 23825361 |
| Sarcomere lengths in human extensor carpi radialis brevis measured by microendoscopy. | Cromie, Melinda J; Sanchez, Gabriel N; Schnitzer, Mark J; Delp, Scott L | Muscle & nerve | 2013 Aug | 286-92 | 23813625 |
| Inference of historical migration rates via haplotype sharing. | Palamara, Pier Francesco; Pe'er, Itsik | Bioinformatics (Oxford, England) | 2013 Jul 1 | i180-8 | 23812983 |
| Improving data and knowledge management to better integrate health care and research. | Cases, M; Furlong, L I; Albanell, J; Altman, R B; Bellazzi, R; Boyer, S; Brand, A; Brookes, A J; Brunak, S; Clark, T W; Gea, J; Ghazal, P; Graf, N; Guigo, R; Klein, T E; Lopez-Bigas, N; Maojo, V; Mons, B; Musen, M; Oliveira, J L; Rowe, A; Ruch, P; Shabo, | Journal of internal medicine. | 2013 Oct; | 321-8 | 23808970 |
| Adopting nested case-control quota sampling designs for the evaluation of risk markers. | Zheng, Yingye; Cai, Tianxi; Pepe, Margaret S | Lifetime data analysis | 2013 Oct | 568-88 | 23807695 |
| Decreased axial diffusivity within language connections: A possible biomarker of schizophrenia risk. | Kubicki, M; Shenton, M E; Maciejewski, P K; Pelavin, P E; Hawley, K J; Ballinger, T; Swisher, T; Jabbar, G A; Thermenos, H W; Keshavan, M S; Seidman, L J; Delisi, L E | Schizophrenia research | 2013 Aug | 67-73 | 23800617 |
| Sparse texture active contour. | Gao, Yi; Bouix, Sylvain; Shenton, Martha; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 2013 Oct | 3866-78 | 23799695 |
| Computational modeling of chemo-electro-mechanical coupling: a novel implicit monolithic finite element approach. | Wong, J; Goktepe, S; Kuhl, E | International journal for numerical methods in biomedical engineering | 2013 Oct | 1104-33 | 23798328 |
| Intrinsic Regression Models for Medial Representation of Subcortical Structures. | Shi, Xiaoyan; Zhu, Hongtu; Ibrahim, Joseph G; Liang, Faming; Lieberman, Jeffrey; Styner, Martin | Journal of the American Statistical Association | 2012 Mar 1 | 12-23 | 23794769 |
| Increased gray matter diffusion anisotropy in patients with persistent post-concussive symptoms following mild traumatic brain injury. | Bouix, Sylvain; Pasternak, Ofer; Rathi, Yogesh; Pelavin, Paula E; Zafonte, Ross; Shenton, Martha E | PloS one | 2013 | e66205 | 23776631 |
| Privacy technology to support data sharing for comparative effectiveness research: a systematic review. | Jiang, Xiaoqian; Sarwate, Anand D; Ohno-Machado, Lucila | Medical care | 2013 Aug | S58-65 | 23774511 |
| RHPN2 drives mesenchymal transformation in malignant glioma by triggering RhoA activation. | Danussi, Carla; Akavia, Uri David; Niola, Francesco; Jovic, Andreja; Lasorella, Anna; Pe'er, Dana; Iavarone, Antonio | Cancer research | 2013 Aug 15 | 5140-50 | 23774217 |
| Biomechanical Model as a Registration Tool for Image-Guided Neurosurgery: Evaluation Against BSpline Registration. | Mostayed, Ahmed; Garlapati, Revanth Reddy; Joldes, Grand Roman; Wittek, Adam; Roy, Aditi; Kikinis, Ron; Warfield, Simon K; Miller, Karol | Annals of biomedical engineering | 2013 Jun 15 | NULL | 23771299 |
| Long-term 3-dimensional stability of mandibular advancement surgery. | Franco, Alexandre A; Cevidanes, Lucia Helena S; Phillips, Ceib; Rossouw, Paul Emile; Turvey, Timothy A; Carvalho, Felipe de Assis R; Paula, Leonardo K de; Quintao, Catia Cardoso A; Almeida, Marco Antonio O | Journal of oral and maxillofacial surgery : official journal of the American Association of Oral and Maxillofacial Surgeons. | 2013 Sep; | 1588-97 | 23769460 |
| Normalization of Plasma 25-Hydroxy Vitamin D Is Associated with Reduced Risk of Surgery in Crohn's Disease. | Ananthakrishnan, Ashwin N; Cagan, Andrew; Gainer, Vivian S; Cai, Tianxi; Cheng, Su-Chun; Savova, Guergana; Chen, Pei; Szolovits, Peter; Xia, Zongqi; De Jager, Philip L; Shaw, Stanley Y; Churchill, Susanne; Karlson, Elizabeth W; Kohane, Isaac; Plenge, Robe | Inflammatory bowel diseases | 2013 Jun 7 | 23751398 | |
| Using Genome Query Language to uncover genetic variation. | Kozanitis, Christos; Heiberg, Andrew; Varghese, George; Bafna, Vineet | Bioinformatics (Oxford, England) | 2013 Jun 10 | NULL | 23751181 |
| Systematic improvement of a classical molecular model of water. | Wang, Lee-Ping; Head-Gordon, Teresa; Ponder, Jay W; Ren, Pengyu; Chodera, John D; Eastman, Peter K; Martinez, Todd J; Pande, Vijay S | The journal of physical chemistry. B | 2013 Aug 29 | 9956-72 | 23750713 |
| Adaptive Distributed Video Coding with Correlation Estimation using Expectation Propagation. | Cui, Lijuan; Wang, Shuang; Jiang, Xiaoqian; Cheng, Samuel | Proceedings of SPIE | 2012 Oct 15 | 23750314 | |
| Mechanical consequences of cell-wall turnover in the elongation of a Gram-positive bacterium. | Misra, Gaurav; Rojas, Enrique R; Gopinathan, Ajay; Huang, Kerwyn Casey | Biophysical journal | 2013 Jun 4 | 2342-52 | 23746506 |
| Forward and inverse electroencephalographic modeling in health and in acute traumatic brain injury. | Irimia, Andrei; Matthew Goh, S Y; Torgerson, Carinna M; Chambers, Micah C; Kikinis, Ron; Van Horn, John D | Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology | 2013 Jun 5 | NULL | 23746499 |
| Automatic delineation of the myocardial wall from CT images via shape segmentation and variational region growing. | Zhu, Liangjia; Gao, Yi; Appia, Vikram; Yezzi, Anthony; Arepalli, Chesnal; Faber, Tracy; Stillman, Arthur; Tannenbaum, Allen | IEEE transactions on bio-medical engineering | 2013 Oct | 2887-95 | 23744658 |
| TEMPORAL REGISTRATION OF PARTIAL DATA USING PARTICLE FILTERING. | Nir, Guy; Tannenbaum, Allen | Proceedings / ICIP ... International Conference on Image Processing | 2011 | 2177-2180 | 23744132 |
| Hypothalamic proteoglycan syndecan-3 is a novel cocaine addiction resilience factor. | Chen, Jihuan; Repunte-Canonigo, Vez; Kawamura, Tomoya; Lefebvre, Celine; Shin, William; Howell, Leonard L; Hemby, Scott E; Harvey, Brandon K; Califano, Andrea; Morales, Marisela; Koob, George F; Sanna, Pietro Paolo | Nature communications | 2013 | 1955 | 23736082 |
| NCBO Technology: Powering semantically aware applications. | Whetzel, Patricia L; NCBO Team | Journal of biomedical semantics | 2013 Apr 15 | S8 | 23734708 |
| Evaluating genome architecture of a complex region via generalized bipartite matching. | Lo, Christine; Kim, Sangwoo; Zakov, Shay; Bafna, Vineet | BMC bioinformatics | 2013 | S13 | 23734567 |
| Extracting physician group intelligence from electronic health records to support evidence based medicine. | Weber, Griffin M; Kohane, Isaac S | PloS one | 2013 | e64933 | 23734227 |
| Dynamic Active Contours for Visual Tracking. | Niethammer, Marc; Tannenbaum, Allen; Angenent, Sigurd | IEEE transactions on automatic control | 2006 | 562-579 | 23729836 |
| Spatial-temporal atlas of human fetal brain development during the early second trimester. | Zhan, Jinfeng; Dinov, Ivo D; Li, Junning; Zhang, Zhonghe; Hobel, Sam; Shi, Yonggang; Lin, Xiangtao; Zamanyan, Alen; Feng, Lei; Teng, Gaojun; Fang, Fang; Tang, Yuchun; Zang, Fengchao; Toga, Arthur W; Liu, Shuwei | NeuroImage | 2013 Nov 15 | 115-26 | 23727529 |
| Increased Cortical Thickness in Male-to-Female Transsexualism. | Luders, Eileen; Sánchez, Francisco J; Tosun, Duygu; Shattuck, David W; Gaser, Christian; Vilain, Eric; Toga, Arthur W | Journal of behavioral and brain science. | 2012 Aug; | 23724358 | |
| Tracking Knee Joint Functional Axes through Tikhonov Filtering and Pl?cker Coordinates. | Kim, Wangdo; Kim, Yoon-Hyuk; Veloso, António P; Kohles, Sean S | Journal of novel physiotherapies. | 2013 Mar 01; | 23720709 | |
| Practice-based evidence: profiling the safety of cilostazol by text-mining of clinical notes. | Leeper, Nicholas J; Bauer-Mehren, Anna; Iyer, Srinivasan V; Lependu, Paea; Olson, Cliff; Shah, Nigam H | PloS one | 2013 | e63499 | 23717437 |
| Association between low density lipoprotein and rheumatoid arthritis genetic factors with low density lipoprotein levels in rheumatoid arthritis and non-rheumatoid arthritis controls. | Liao, Katherine P; Diogo, Dorothee; Cui, Jing; Cai, Tianxi; Okada, Yukinori; Gainer, Vivian S; Murphy, Shawn N; Gupta, Namrata; Mirel, Daniel; Ananthakrishnan, Ashwin N; Szolovits, Peter; Shaw, Stanley Y; Raychaudhuri, Soumya; Churchill, Susanne; Kohane, | Annals of the rheumatic diseases | 2013 May 28 | 23716066 | |
| Polymer Adsorption on Curved Surfaces: A Geometric Approach. | Hershkovits, Eli; Tannenbaum, Allen; Tannenbaum, Rina | The journal of physical chemistry. C, Nanomaterials and interfaces | 2007 Aug 23 | 12369-12375 | 23710263 |
| VOXEL-WISE GROUP ANALYSIS OF DTI. | Liu, Zhexing; Zhu, Hongtu; Marks, Bonita L; Katz, Laurence M; Goodlett, Casey B; Gerig, Guido; Styner, Martin | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2009 | 807-810 | 23703686 |
| A rolling constraint reproduces ground reaction forces and moments in dynamic simulations of walking, running, and crouch gait. | Hamner, Samuel R; Seth, Ajay; Steele, Katherine M; Delp, Scott L | Journal of biomechanics | 2013 Jun 21 | 1772-6 | 23702045 |
| Human genetics in rheumatoid arthritis guides a high-throughput drug screen of the CD40 signaling pathway. | Li, Gang; Diogo, Dorothee; Wu, Di; Spoonamore, Jim; Dancik, Vlado; Franke, Lude; Kurreeman, Fina; Rossin, Elizabeth J; Duclos, Grant; Hartland, Cathy; Zhou, Xuezhong; Li, Kejie; Liu, Jun; De Jager, Philip L; Siminovitch, Katherine A; Zhernakova, Alexandra | PLoS genetics | 2013 May | e1003487 | 23696745 |
| Inferences on the biochemical and environmental regulation of universal stress proteins from Schistosomiasis parasites. | Mbah, Andreas N; Mahmud, Ousman; Awofolu, Omotayo R; Isokpehi, Raphael D | Advances and applications in bioinformatics and chemistry : AABC. | 2013; | 23696708 | |
| Ventricular enlargement and its clinical correlates in the imaging cohort from the ADCS MCI donepezil/vitamin E study. | Apostolova, Liana G; Babakchanian, Sona; Hwang, Kristy S; Green, Amity E; Zlatev, Dimitar; Chou, Yi-Yu; DeCarli, Charlie; Jack Jr, Clifford R; Petersen, Ronald C; Aisen, Paul S; Cummings, Jeffrey L; Toga, Arthur W; Thompson, Paul M | Alzheimer disease and associated disorders | 2013 Apr-Jun | 174-81 | 23694947 |
| Impact of sex and gonadal steroids on neonatal brain structure. | Knickmeyer, Rebecca C; Wang, Jiaping; Zhu, Hongtu; Geng, Xiujuan; Woolson, Sandra; Hamer, Robert M; Konneker, Thomas; Styner, Martin; Gilmore, John H | Cerebral cortex (New York, N.Y. : 1991). | 2014 Oct; | 2721-31 | 23689636 |
| Morse-Smale Regression. | Gerber, Samuel; Rubel, Oliver; Bremer, Peer-Timo; Pascucci, Valerio; Whitaker, Ross T | Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America | 2013 Jan 1 | 193-214 | 23687424 |
| A flexible framework for recognizing events, temporal expressions, and temporal relations in clinical text. | Roberts, Kirk; Rink, Bryan; Harabagiu, Sanda M | Journal of the American Medical Informatics Association : JAMIA | 2013 May 18 | 23686936 | |
| Human middle longitudinal fascicle: segregation and behavioral-clinical implications of two distinct fiber connections linking temporal pole and superior temporal gyrus with the angular gyrus or superior parietal lobule using multi-tensor tractography. | Makris, N; Preti, M G; Wassermann, D; Rathi, Y; Papadimitriou, G M; Yergatian, C; Dickerson, B C; Shenton, M E; Kubicki, M | Brain imaging and behavior | 2013 Sep | 335-52 | 23686576 |
| Shape-Based Approach to Robust Image Segmentation using Kernel PCA. | Dambreville, Samuel; Rathi, Yogesh; Tannenbaum, Allen | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 2006 | 977-984 | 23685633 |
| viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia. | Amir, El-ad David; Davis, Kara L; Tadmor, Michelle D; Simonds, Erin F; Levine, Jacob H; Bendall, Sean C; Shenfeld, Daniel K; Krishnaswamy, Smita; Nolan, Garry P; Pe'er, Dana | Nature biotechnology | 2013 Jun | 545-52 | 23685480 |
| COMBINING ATLAS AND ACTIVE CONTOUR FOR AUTOMATIC 3D MEDICAL IMAGE SEGMENTATION. | Gao, Yi; Tannenbaum, Allen | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2011 | 1401-1404 | 23685464 |
| Diffusion imaging quality control via entropy of principal direction distribution. | Farzinfar, Mahshid; Oguz, Ipek; Smith, Rachel G; Verde, Audrey R; Dietrich, Cheryl; Gupta, Aditya; Escolar, Maria L; Piven, Joseph; Pujol, Sonia; Vachet, Clement; Gouttard, Sylvain; Gerig, Guido; Dager, Stephen; McKinstry, Robert C; Paterson, Sarah; Evans | NeuroImage | 2013 Nov 15 | 12-Jan | 23684874 |
| A Graph Cut Approach to Image Segmentation in Tensor Space. | Malcolm, James; Rathi, Yogesh; Tannenbaum, Allen | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 2008 | 1-8 | 23680693 |
| Temporal reasoning over clinical text: the state of the art. | Sun, Weiyi; Rumshisky, Anna; Uzuner, Ozlem | Journal of the American Medical Informatics Association : JAMIA | 2013 May 15 | NULL | 23676245 |
| Beyond NPM-anaplastic lymphoma kinase driven lymphomagenesis: alternative drivers in anaplastic large cell lymphoma. | Tabbo, Fabrizio; Ponzoni, Maurilio; Rabadan, Raul; Bertoni, Francesco; Inghirami, Giorgio; the European T-cell Lymphoma Study Group | Current opinion in hematology | 2013 Jul | 374-381 | 23673339 |
| Improving breast cancer survival analysis through competition-based multidimensional modeling. | Bilal, Erhan; Dutkowski, Janusz; Guinney, Justin; Jang, In Sock; Logsdon, Benjamin A; Pandey, Gaurav; Sauerwine, Benjamin A; Shimoni, Yishai; Moen Vollan, Hans Kristian; Mecham, Brigham H; Rueda, Oscar M; Tost, Jorg; Curtis, Christina; Alvarez, Mariano J; | PLoS computational biology | 2013 May | e1003047 | 23671412 |
| KERNEL-BASED HIGH-DIMENSIONAL HISTOGRAM ESTIMATION FOR VISUAL TRACKING. | Karasev, Peter; Malcolm, James; Tannenbaum, Allen | Proceedings / ICIP ... International Conference on Image Processing | 2008 | 2728-2731 | 23666258 |
| SEMI-SUPERVISED OBJECT RECOGNITION USING STRUCTURE KERNEL. | Wang, Botao; Xiong, Hongkai; Jiang, Xiaoqian; Ling, Fan | Proceedings / ICIP ... International Conference on Image Processing | 2012 | 2157-2160 | 23666108 |
| Reprever: resolving low-copy duplicated sequences using template driven assembly. | Kim, Sangwoo; Medvedev, Paul; Paton, Tara A; Bafna, Vineet | Nucleic acids research | 2013 Jul 1 | e128 | 23658221 |
| HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses. | Contreras-Galindo, Rafael; Kaplan, Mark H; He, Shirley; Contreras-Galindo, Angie C; Gonzalez-Hernandez, Marta J; Kappes, Ferdinand; Dube, Derek; Chan, Susana M; Robinson, Dan; Meng, Fan; Dai, Manhong; Gitlin, Scott D; Chinnaiyan, Arul M; Omenn, Gilbert S; | Genome research | 2013 Sep | 1505-13 | 23657884 |
| HIV Infection Reveals Wide-Spread Expansion of Novel Centromeric Human Endogenous Retroviruses. | Contreras-Galindo, Rafael; Kaplan, Mark H; He, Shirley; Contreras-Galindo, Angie C; Gonzalez-Hernandez, Marta J; Kappes, Ferdinand; Dube, Derek; Chan, Susana M; Robinson, Dan; Meng, Fan; Dai, Manhong; Gitlin, Scott D; Chinnaiyan, Arul M; Omenn, Gilbert S; | Genome research | 2013 May 8 | 23657884 | |
| Surgery, virtual reality, and the future. | Vosburgh, Kirby G; Golby, Alexandra; Pieper, Steven D | Studies in health technology and informatics | 2013 | vii - xiii | 23653952 |
| Localized Statistics for DW-MRI Fiber Bundle Segmentation. | Lankton, Shawn; Melonakos, John; Malcolm, James; Dambreville, Samuel; Tannenbaum, Allen | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 2008 | 1-8 | 23652079 |
| Genome wide proteomics of ERBB2 and EGFR and other oncogenic pathways in inflammatory breast cancer. | Zhang, Emma Yue; Cristofanilli, Massimo; Robertson, Fredika; Reuben, James M; Mu, Zhaomei; Beavis, Ronald C; Im, Hogune; Snyder, Michael; Hofree, Matan; Ideker, Trey; Omenn, Gilbert S; Fanayan, Susan; Jeong, Seul-Ki; Paik, Young-Ki; Zhang, Anna Fan; Wu, S | Journal of proteome research | 2013 Jun 7 | 2805-17 | 23647160 |
| MATHEMATICAL METHODS IN MEDICAL IMAGE PROCESSING. | Angenent, Sigurd; Pichon, Eric; Tannenbaum, Allen | Bulletin (new series) of the American Mathematical Society | 2006 | 365-396 | 23645963 |
| MULTIVARIATE VARYING COEFFICIENT MODEL FOR FUNCTIONAL RESPONSES. | Zhu, Hongtu; Li, Runze; Kong, Linglong | Annals of statistics | 2012 Oct 1 | 2634-2666 | 23645942 |
| TRACKING THROUGH CHANGES IN SCALE. | Lankton, Shawn; Malcolm, James; Nakhmani, Arie; Tannenbaum, Allen | Proceedings / ICIP ... International Conference on Image Processing | 2008 | 241-244 | 23645076 |
| Enhanced modeling via network theory: Adaptive sampling of Markov state models. | Bowman, Gregory R; Ensign, Daniel L; Pande, Vijay S | Journal of chemical theory and computation. | 2010; | 23626502 | |
| Growth on demand: Reviewing the mechanobiology of stretched skin. | Zollner, Alexander M; Holland, Maria A; Honda, Kord S; Gosain, Arun K; Kuhl, Ellen | Journal of the mechanical behavior of biomedical materials | 2013 Apr 3 | 23623569 | |
| Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems. | Gholami, Behnood; Bailey, James M; Haddad, Wassim M; Tannenbaum, Allen R | IEEE transactions on control systems technology : a publication of the IEEE Control Systems Society | 2012 Mar | 1343-1350 | 23620646 |
| Optical flow estimation for flame detection in videos. | Mueller, Martin; Karasev, Peter; Kolesov, Ivan; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 2013 Jul | 2786-97 | 23613042 |
| Genetic contributions to changes of fiber tracts of ventral visual stream in 22q11.2 deletion syndrome. | Kikinis, Zora; Makris, Nikos; Finn, Christine T; Bouix, Sylvain; Lucia, Diandra; Coleman, Michael J; Tworog-Dube, Erica; Kikinis, Ron; Kucherlapati, Raju; Shenton, Martha E; Kubicki, Marek | Brain imaging and behavior | 2013 Apr 24 | 23612843 | |
| Lateral ventricle morphology analysis via mean latitude axis. | Paniagua, Beatriz; Lyall, Amanda; Berger, Jean-Baptiste; Vachet, Clement; Hamer, Robert M; Woolson, Sandra; Lin, Weili; Gilmore, John; Styner, Martin | Proceedings - Society of Photo-Optical Instrumentation Engineers | 2013 Mar 29 | 23606800 | |
| On the mechanics of continua with boundary energies and growing surfaces. | Papastavrou, Areti; Steinmann, Paul; Kuhl, Ellen | Journal of the mechanics and physics of solids | 2013 Jun 1 | 1446-1463 | 23606760 |
| Combining rules and machine learning for extraction of temporal expressions and events from clinical narratives. | Kovacevic, Aleksandar; Dehghan, Azad; Filannino, Michele; Keane, John A; Nenadic, Goran | Journal of the American Medical Informatics Association : JAMIA | 2013 Apr 20 | 23605114 | |
| Heterogeneity of tumor-induced gene expression changes in the human metabolic network. | Hu, Jie; Locasale, Jason W; Bielas, Jason H; O'Sullivan, Jacintha; Sheahan, Kieran; Cantley, Lewis C; Heiden, Matthew G Vander; Vitkup, Dennis | Nature biotechnology | 2013 Jun | 522-9 | 23604282 |
| Innovations in proteomic profiling of cancers: alternative splice variants as a new class of cancer biomarker candidates and bridging of proteomics with structural biology. | Omenn, Gilbert S; Menon, Rajasree; Zhang, Yang | Journal of proteomics | 2013 Sep 2 | 28-37 | 23603631 |
| Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer. | Margolin, Adam A; Bilal, Erhan; Huang, Erich; Norman, Thea C; Ottestad, Lars; Mecham, Brigham H; Sauerwine, Ben; Kellen, Michael R; Mangravite, Lara M; Furia, Matthew D; Vollan, Hans Kristian Moen; Rueda, Oscar M; Guinney, Justin; Deflaux, Nicole A; Hoff, | Science translational medicine | 2013 Apr 17 | 181re1 | 23596205 |
| Dominant effects of the Huntington's disease HTT CAG repeat length are captured in gene-expression data sets by a continuous analysis mathematical modeling strategy. | Lee, Jong-Min; Galkina, Ekaterina I; Levantovsky, Rachel M; Fossale, Elisa; Anne Anderson, Mary; Gillis, Tammy; Srinidhi Mysore, Jayalakshmi; Coser, Kathryn R; Shioda, Toshi; Zhang, Bin; Furia, Matthew D; Derry, Jonathan; Kohane, Isaac S; Seong, Ihn Sik; | Human molecular genetics | 2013 Aug 15 | 3227-38 | 23595883 |
| ENTROPY BASED DTI QUALITY CONTROL VIA REGIONAL ORIENTATION DISTRIBUTION. | Farzinfar, M; Dietrich, C; Smith, Rg; Li, Y; Gupta, A; Liu, Z; Styner, Ma | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2012 | 22-26 | 23595508 |
| Imaging patients with psychosis and a mouse model establishes a spreading pattern of hippocampal dysfunction and implicates glutamate as a driver. | Schobel, Scott A; Chaudhury, Nashid H; Khan, Usman A; Paniagua, Beatriz; Styner, Martin A; Asllani, Iris; Inbar, Benjamin P; Corcoran, Cheryl M; Lieberman, Jeffrey A; Moore, Holly; Small, Scott A | Neuron | 2013 Apr 10 | 81-93 | 23583108 |
| Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways. | Rardin, Matthew J; Newman, John C; Held, Jason M; Cusack, Michael P; Sorensen, Dylan J; Li, Biao; Schilling, Birgit; Mooney, Sean D; Kahn, C Ronald; Verdin, Eric; Gibson, Bradford W | Proceedings of the National Academy of Sciences of the United States of America | 2013 Apr 16 | 6601-6 | 23576753 |
| Probing DNA shape and methylation state on a genomic scale with DNase I. | Lazarovici, Allan; Zhou, Tianyin; Shafer, Anthony; Dantas Machado, Ana Carolina; Riley, Todd R; Sandstrom, Richard; Sabo, Peter J; Lu, Yan; Rohs, Remo; Stamatoyannopoulos, John A; Bussemaker, Harmen J | Proceedings of the National Academy of Sciences of the United States of America | 2013 Apr 16 | 6376-81 | 23576721 |
| Towards improved ultrasound-based analysis and 3D visualization of the fetal brain using the 3D Slicer. | Oyama, R; Jakab, M; Kikuchi, A; Sugiyama, T; Kikinis, R; Pujol, S | Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology | 2013 Nov | 609-10 | 23576282 |
| Eventual situations for timeline extraction from clinical reports. | Grouin, Cyril; Grabar, Natalia; Hamon, Thierry; Rosset, Sophie; Tannier, Xavier; Zweigenbaum, Pierre | Journal of the American Medical Informatics Association : JAMIA | 2013 Apr 9 | NULL | 23571851 |
| A hybrid system for temporal information extraction from clinical text. | Tang, Buzhou; Wu, Yonghui; Jiang, Min; Chen, Yukun; Denny, Joshua C; Xu, Hua | Journal of the American Medical Informatics Association : JAMIA | 2013 Apr 9 | NULL | 23571849 |
| Pharmacovigilance using clinical notes. | LePendu, P; Iyer, S V; Bauer-Mehren, A; Harpaz, R; Mortensen, J M; Podchiyska, T; Ferris, T A; Shah, N H | Clinical pharmacology and therapeutics | 2013 Jun | 547-55 | 23571773 |
| Performance of pharmacovigilance signal-detection algorithms for the FDA adverse event reporting system. | Harpaz, R; DuMouchel, W; LePendu, P; Bauer-Mehren, A; Ryan, P; Shah, N H | Clinical pharmacology and therapeutics | 2013 Jun | 539-46 | 23571771 |
| Diffusion weighted imaging of prefrontal cortex in prodromal huntington's disease. | Matsui, Joy T; Vaidya, Jatin G; Johnson, Hans J; Magnotta, Vincent A; Long, Jeffrey D; Mills, James A; Lowe, Mark J; Sakaie, Ken E; Rao, Stephen M; Smith, Megan M; Paulsen, Jane S | Human brain mapping | 2013 Apr 9 | 23568433 | |
| Building Spatiotemporal Anatomical Models using Joint 4-D Segmentation, Registration, and Subject-Specific Atlas Estimation. | Prastawa, Marcel; Awate, Suyash P; Gerig, Guido | Proceedings / sponsored by IEEE Computer Society Technical Committee on Pattern Analysis and Machine Intelligence. Workshop on Mathematical Methods in Biomedical Image Analysis. | 2012; | 49-56 | 23568185 |
| Improving Case Definition of Crohn's Disease and Ulcerative Colitis in Electronic Medical Records Using Natural Language Processing: A Novel Informatics Approach. | Ananthakrishnan, Ashwin N; Cai, Tianxi; Savova, Guergana; Cheng, Su-Chun; Chen, Pei; Perez, Raul Guzman; Gainer, Vivian S; Murphy, Shawn N; Szolovits, Peter; Xia, Zongqi; Shaw, Stanley; Churchill, Susanne; Karlson, Elizabeth W; Kohane, Isaac; Plenge, Robe | Inflammatory bowel diseases | 2013 Jun | 1411-1420 | 23567779 |
| Evaluating temporal relations in clinical text: 2012 i2b2 Challenge. | Sun, Weiyi; Rumshisky, Anna; Uzuner, Ozlem | Journal of the American Medical Informatics Association : JAMIA | 2013 Apr 5 | NULL | 23564629 |
| EXpectation Propagation LOgistic REgRession (EXPLORER): Distributed privacy-preserving online model learning. | Wang, Shuang; Jiang, Xiaoqian; Wu, Yuan; Cui, Lijuan; Cheng, Samuel; Ohno-Machado, Lucila | Journal of biomedical informatics | 2013 Jun | 480-96 | 23562651 |
| A controlled greedy supervised approach for co-reference resolution on clinical text. | Chowdhury, Md Faisal Mahbub; Zweigenbaum, Pierre | Journal of biomedical informatics | 2013 Jun | 506-15 | 23562650 |
| Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. | Sohn, Sunghwan; Wagholikar, Kavishwar B; Li, Dingcheng; Jonnalagadda, Siddhartha R; Tao, Cui; Elayavilli, Ravikumar Komandur; Liu, Hongfang | Journal of the American Medical Informatics Association : JAMIA | 2013 Apr 4 | NULL | 23558168 |
| Natural Language Processing to identify pneumonia from radiology reports. | Dublin, Sascha; Baldwin, Eric; Walker, Rod L; Christensen, Lee M; Haug, Peter J; Jackson, Michael L; Nelson, Jennifer C; Ferraro, Jeffrey; Carrell, David; Chapman, Wendy W | Pharmacoepidemiology and drug safety | 2013 Aug | 834-41 | 23554109 |
| The stationary configuration of the knee. | Kim, Wangdo; Veloso, Antonio P; Vleck, Veronica E; Andrade, Carlos; Kohles, Sean S | Journal of the American Podiatric Medical Association | 2013 Mar-Apr | 126-35 | 23536503 |
| SHRINE: enabling nationally scalable multi-site disease studies. | McMurry, Andrew J; Murphy, Shawn N; MacFadden, Douglas; Weber, Griffin; Simons, William W; Orechia, John; Bickel, Jonathan; Wattanasin, Nich; Gilbert, Clint; Trevvett, Philip; Churchill, Susanne; Kohane, Isaac S | PloS one | 2013 | e55811 | 23533569 |
| MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples. | Trifonov, Vladimir; Pasqualucci, Laura; Dalla Favera, Riccardo; Rabadan, Raul | BMC systems biology | 2013 | 25 | 23531283 |
| An informational framework to predict reaction of constraints using a reciprocally connected knee model. | Kim, Wangdo; Veloso, Antonio P; Araújo, Duarte; Vleck, Veronica; João, Filipa | Computer methods in biomechanics and biomedical engineering. | 2015; | 78-89 | 23528152 |
| A la Recherche du Temps Perdu: extracting temporal relations from medical text in the 2012 i2b2 NLP challenge. | Cherry, Colin; Zhu, Xiaodan; Martin, Joel; de Bruijn, Berry | Journal of the American Medical Informatics Association : JAMIA | 2013 Mar 23 | 23523875 | |
| White Matter Microstructure and Atypical Visual Orienting in 7-Month-Olds at Risk for Autism. | Elison, Jed T; Paterson, Sarah J; Wolff, Jason J; Reznick, J Steven; Sasson, Noah J; Gu, Hongbin; Botteron, Kelly N; Dager, Stephen R; Estes, Annette M; Evans, Alan C; Gerig, Guido; Hazlett, Heather C; Schultz, Robert T; Styner, Martin; Zwaigenbaum, Lonni | The American journal of psychiatry | 2013 Mar 20 | 23511344 | |
| An algorithmic approach for breakage-fusion-bridge detection in tumor genomes. | Zakov, Shay; Kinsella, Marcus; Bafna, Vineet | Proceedings of the National Academy of Sciences of the United States of America | 2013 Apr 2 | 5546-51 | 23503850 |
| A New Distance Measure Based on Generalized Image Normalized Cross-Correlation for Robust Video Tracking and Image Recognition. | Nakhmani, Arie; Tannenbaum, Allen | Pattern recognition letters | 2013 Feb 1 | 315-321 | 23503649 |
| Six-week gait retraining program reduces knee adduction moment, reduces pain, and improves function for individuals with medial compartment knee osteoarthritis. | Shull, Pete B; Silder, Amy; Shultz, Rebecca; Dragoo, Jason L; Besier, Thor F; Delp, Scott L; Cutkosky, Mark R | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2013 Jul | 1020-5 | 23494804 |
| Landmark risk prediction of residual life for breast cancer survival. | Parast, Layla; Cai, Tianxi | Statistics in medicine | 2013 Mar 14 | NULL | 23494768 |
| Conformation guides molecular efficacy in docking screens of activated ýý-2 adrenergic G protein coupled receptor. | Weiss, Dahlia R; Ahn, SeungKirl; Sassano, Maria F; Kleist, Andrew; Zhu, Xiao; Strachan, Ryan; Roth, Bryan L; Lefkowitz, Robert J; Shoichet, Brian K | ACS chemical biology | 2013 May 17 | 1018-26 | 23485065 |
| Differential expression of miR-145 in children with Kawasaki disease. | Shimizu, Chisato; Kim, Jihoon; Stepanowsky, Petra; Trinh, Christine; Lau, Hubert D; Akers, Johnny C; Chen, Clark; Kanegaye, John T; Tremoulet, Adriana; Ohno-Machado, Lucila; Burns, Jane C | PloS one | 2013 | e58159 | 23483985 |
| How muscle fiber lengths and velocities affect muscle force generation as humans walk and run at different speeds. | Arnold, Edith M; Hamner, Samuel R; Seth, Ajay; Millard, Matthew; Delp, Scott L | The Journal of experimental biology | 2013 Jun 1 | 2150-60 | 23470656 |
| An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge. | Xu, Yan; Wang, Yining; Liu, Tianren; Tsujii, Junichi; Chang, Eric I-Chao | Journal of the American Medical Informatics Association : JAMIA | 2013 Mar 6 | 23467472 | |
| Web-scale pharmacovigilance: listening to signals from the crowd. | White, Ryen W; Tatonetti, Nicholas P; Shah, Nigam H; Altman, Russ B; Horvitz, Eric | Journal of the American Medical Informatics Association : JAMIA | 2013 May 1 | 404-8 | 23467469 |
| Automating the study of population variation of electrocardiographic features. | Kohane, Isaac S | Circulation | 2013 Apr 2 | 1357-8 | 23463856 |
| Referent tracking for treatment optimisation in schizophrenic patients: A case study in applying philosophical ontology to diagnostic algorithms. | Ceusters, Werner; Smith, Barry | Web semantics (Online) | 2006 Sep 1 | 229-236 | 23459504 |
| Stretching skin: The physiological limit and beyond. | Tepole, Adrian Buganza; Gosain, Arun K; Kuhl, Ellen | International journal of non-linear mechanics | 2012 Oct | 938-949 | 23459410 |
| GBM volumetry using the 3D Slicer medical image computing platform. | Egger, Jan; Kapur, Tina; Fedorov, Andriy; Pieper, Steve; Miller, James V; Veeraraghavan, Harini; Freisleben, Bernd; Golby, Alexandra J; Nimsky, Christopher; Kikinis, Ron | Scientific reports | 2013 | 1364 | 23455483 |
| Flexing computational muscle: modeling and simulation of musculotendon dynamics. | Millard, Matthew; Uchida, Thomas; Seth, Ajay; Delp, Scott L | Journal of biomechanical engineering | 2013 Feb | 021005 | 23445050 |
| Comparison of four prediction models to discriminate benign from malignant vertebral compression fractures according to MRI feature analysis. | Thawait, Shrey K; Kim, Jihoon; Klufas, Roman A; Morrison, William B; Flanders, Adam E; Carrino, John A; Ohno-Machado, Lucila | AJR. American journal of roentgenology | 2013 Mar | 493-502 | 23436836 |
| From single nucleotide polymorphism to transcriptional mechanism: a model for FRMD3 in diabetic nephropathy. | Martini, Sebastian; Nair, Viji; Patel, Sanjeevkumar R; Eichinger, Felix; Nelson, Robert G; Weil, E Jennifer; Pezzolesi, Marcus G; Krolewski, Andrzej S; Randolph, Ann; Keller, Benjamin J; Werner, Thomas; Kretzler, Matthias | Diabetes | 2013 Jul | 2605-12 | 23434934 |
| Joint CT/CBCT deformable registration and CBCT enhancement for cancer radiotherapy. | Lou, Yifei; Niu, Tianye; Jia, Xun; Vela, Patricio A; Zhu, Lei; Tannenbaum, Allen R | Medical image analysis | 2013 Apr | 387-400 | 23433756 |
| MetaSeq: privacy preserving meta-analysis of sequencing-based association studies. | Singh, Angad Pal; Zafer, Samreen; Pe'er, Itsik | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 2013 | 356-67 | 23424140 |
| Insights into diseases of human telomerase from dynamical modeling. | Flores, Samuel Coulbourn; Zemora, Georgeta; Waldsich, Christina | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. | 2013; | 200-11 | 23424125 |
| Molecular dynamics simulations for the ranking, evaluation, and refinement of computationally designed proteins. | Kiss, Gert; Pande, Vijay S; Houk, K N | Methods in enzymology. | 2013; | 145-70 | 23422429 |
| Wessim: a whole-exome sequencing simulator based on in silico exome capture. | Kim, Sangwoo; Jeong, Kyowon; Bafna, Vineet | Bioinformatics (Oxford, England) | 2013 Apr 15 | 1076-7 | 23413434 |
| STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation. | Wittkop, Tobias; TerAvest, Emily; Evani, Uday S; Fleisch, K Mathew; Berman, Ari E; Powell, Corey; Shah, Nigam H; Mooney, Sean D | BMC bioinformatics | 2013 | 53 | 23409969 |
| N-glycoproteome of E14.Tg2a mouse embryonic stem cells. | Sun, Bingyun; Ma, Li; Yan, Xiaowei; Lee, Denis; Alexander, Vinita; Hohmann, Laura J; Lorang, Cynthia; Chandrasena, Lalangi; Tian, Qiang; Hood, Leroy | PloS one | 2013 | e55722 | 23405203 |
| One-year assessment of surgical outcomes in Class III patients using cone beam computed tomography. | de Paula, L K; Ruellas, A C O; Paniagua, B; Styner, M; Turvey, T; Zhu, H; Wang, J; Cevidanes, L H S | International journal of oral and maxillofacial surgery. | 2013 Jun; | 780-9 | 23403336 |
| Abnormal aldosterone physiology and cardiometabolic risk factors. | Vaidya, Anand; Underwood, Patricia C; Hopkins, Paul N; Jeunemaitre, Xavier; Ferri, Claudio; Williams, Gordon H; Adler, Gail K | Hypertension | 2013 Apr | 886-93 | 23399714 |
| Classic "broken cell" techniques and newer live cell methods for cell cycle assessment. | Henderson, Lindsay; Bortone, Dante S; Lim, Curtis; Zambon, Alexander C | American journal of physiology. Cell physiology | 2013 May 15 | C927-38 | 23392113 |
| Properties of cell death models calibrated and compared using Bayesian approaches. | Eydgahi, Hoda; Chen, William W; Muhlich, Jeremy L; Vitkup, Dennis; Tsitsiklis, John N; Sorger, Peter K | Molecular systems biology | 2013 | 644 | 23385484 |
| Detecting concept relations in clinical text: insights from a state-of-the-art model. | Zhu, Xiaodan; Cherry, Colin; Kiritchenko, Svetlana; Martin, Joel; de Bruijn, Berry | Journal of biomedical informatics | 2013 Apr | 275-85 | 23380683 |
| Recursive feature elimination for brain tumor classification using desorption electrospray ionization mass spectrometry imaging. | Gholami, Behnood; Norton, Isaiah; Tannenbaum, Allen R; Agar, Nathalie Y R | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2012 | 5258-61 | 23367115 |
| Automatic segmentation of the left atrium from MRI images using salient feature and contour evolution. | Zhu, Liangjia; Gao, Yi; Yezzi, Anthony; MacLeod, Rob; Cates, Joshua; Tannenbaum, Allen | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2012 | 3211-4 | 23366609 |
| Quantifying pathogen surveillance using temporal genomic data. | Chan, Joseph M; Rabadan, Raul | mBio | 2013 | e00524-12 | 23362319 |
| QT interval and antidepressant use: a cross sectional study of electronic health records. | Castro, Victor M; Clements, Caitlin C; Murphy, Shawn N; Gainer, Vivian S; Fava, Maurizio; Weilburg, Jeffrey B; Erb, Jane L; Churchill, Susanne E; Kohane, Isaac S; Iosifescu, Dan V; Smoller, Jordan W; Perlis, Roy H | BMJ (Clinical research ed.) | 2013 | f288 | 23360890 |
| Gene expression alterations in bipolar disorder postmortem brains. | Chen, Haiming; Wang, Nulang; Zhao, Xin; Ross, Christopher A; O'Shea, K Sue; McInnis, Melvin G | Bipolar disorders | 2013 Mar | 177-87 | 23360497 |
| Multiscale adaptive generalized estimating equations for longitudinal neuroimaging data. | Li, Yimei; Gilmore, John H; Shen, Dinggang; Styner, Martin; Lin, Weili; Zhu, Hongtu | NeuroImage. | 2013 May 15; | 23357075 | |
| Evaluation of methods for modeling transcription factor sequence specificity. | Weirauch, Matthew T; Cote, Atina; Norel, Raquel; Annala, Matti; Zhao, Yue; Riley, Todd R; Saez-Rodriguez, Julio; Cokelaer, Thomas; Vedenko, Anastasia; Talukder, Shaheynoor; DREAM5 Consortium; Bussemaker, Harmen J; Morris, Quaid D; Bulyk, Martha L; Stolovi | Nature biotechnology | 2013 Feb | 126-34 | 23354101 |
| A large-scale evaluation of computational protein function prediction. | Radivojac, Predrag; Clark, Wyatt T; Oron, Tal Ronnen; Schnoes, Alexandra M; Wittkop, Tobias; Sokolov, Artem; Graim, Kiley; Funk, Christopher; Verspoor, Karin; Ben-Hur, Asa; Pandey, Gaurav; Yunes, Jeffrey M; Talwalkar, Ameet S; Repo, Susanna; Souza, Michae | Nature methods | 2013 Mar | 221-7 | 23353650 |
| Toward a "structural BLAST": using structural relationships to infer function. | Dey, Fabian; Cliff Zhang, Qiangfeng; Petrey, Donald; Honig, Barry | Protein science : a publication of the Protein Society | 2013 Apr | 359-66 | 23349097 |
| Federated queries of clinical data repositories: the sum of the parts does not equal the whole. | Weber, Griffin M | Journal of the American Medical Informatics Association : JAMIA | 2013 Jun | e155-61 | 23349080 |
| White matter fractional anisotropy is inversely related to anxious symptoms in older adults with atherosclerosis. | Bijanki, Kelly R; Stillman, Ashley N; Arndt, Stephan; Magnotta, Vincent A; Fiedorowicz, Jess G; Haynes, William G; Matsui, Joy T; Johnson, Hans J; Moser, David J | International journal of geriatric psychiatry | 2013 Jan 24 | 23348834 | |
| Similar risk of depression and anxiety following surgery or hospitalization for Crohn's disease and ulcerative colitis. | Ananthakrishnan, Ashwin N; Gainer, Vivian S; Cai, Tianxi; Perez, Raul Guzman; Cheng, Su-Chun; Savova, Guergana; Chen, Pei; Szolovits, Peter; Xia, Zongqi; De Jager, Philip L; Shaw, Stanley; Churchill, Susanne; Karlson, Elizabeth W; Kohane, Isaac; Perlis, R | The American journal of gastroenterology | 2013 Apr | 594-601 | 23337479 |
| Exact statistical tests for the intersection of independent lists of genes. | Natarajan, Loki; Pu, Minya; Messer, Karen | The annals of applied statistics | 2012 Jun | 521-541 | 23335952 |
| OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation. | Eastman, Peter; Friedrichs, Mark S; Chodera, John D; Radmer, Randall J; Bruns, Christopher M; Ku, Joy P; Beauchamp, Kyle A; Lane, Thomas J; Wang, Lee-Ping; Shukla, Diwakar; Tye, Tony; Houston, Mike; Stich, Timo; Klein, Christoph; Shirts, Michael R; Pande, | Journal of chemical theory and computation | 2013 Jan 8 | 461-469 | 23316124 |
| Systems-based approaches toward wound healing. | Buganza Tepole, Adrian; Kuhl, Ellen | Pediatric research | 2013 Apr | 553-63 | 23314298 |
| ISA-TAB-Nano: a specification for sharing nanomaterial research data in spreadsheet-based format. | Thomas, Dennis G; Gaheen, Sharon; Harper, Stacey L; Fritts, Martin; Klaessig, Fred; Hahn-Dantona, Elizabeth; Paik, David; Pan, Sue; Stafford, Grace A; Freund, Elaine T; Klemm, Juli D; Baker, Nathan A | BMC biotechnology | 2013 | 2 | 23311978 |
| Sexually dimorphic white matter geometry abnormalities in adolescent onset schizophrenia. | Savadjiev, P; Whitford, T J; Hough, M E; Clemm von Hohenberg, C; Bouix, S; Westin, C-F; Shenton, M E; Crow, T J; James, A C; Kubicki, M | Cerebral cortex (New York, N.Y. : 1991). | 2014 May; | 1389-96 | 23307635 |
| Preserving Institutional Privacy in Distributed binary Logistic Regression. | Wu, Yuan; Jiang, Xiaoqian; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2012 | 1450-8 | 23304425 |
| Selecting cases for whom additional tests can improve prognostication. | Jiang, Xiaoqian; Kim, Jihoon; Wu, Yuan; Wang, Shuang; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2012 | 1260-8 | 23304404 |
| Towards mechanism classifiers: expression-anchored Gene Ontology signature predicts clinical outcome in lung adenocarcinoma patients. | Yang, Xinan; Li, Haiquan; Regan, Kelly; Li, Jianrong; Huang, Yong; Lussier, Yves A | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2012 | 1040-9 | 23304380 |
| Towards the creation of a visual ontology of biomedical imaging entities. | Simpson, Matthew S; You, Daekeun; Rahman, Md Mahmudur; Antani, Sameer K; Thoma, George R; Demner-Fushman, Dina | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2012 | 866-75 | 23304361 |
| The relationship between structural characteristics of 2010 challenge documents and ratings of document quality. | Shen, Shuying; South, Brett R; Butler, Jorie; Barrus, Robyn; Weir, Charlene | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2012 | 848-55 | 23304359 |
| Applications of ontology design patterns in biomedical ontologies. | Mortensen, Jonathan M; Horridge, Matthew; Musen, Mark A; Noy, Natalya F | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2012; | 23304337 | |
| A semi-automated quantification of pulmonary artery dimensions in computed tomography angiography images. | Berty, Holly L; Simon, Marc; Chapman, Brian E | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2012 | 36-42 | 23304270 |
| Chapter 9: Analyses using disease ontologies. | Shah, Nigam H; Cole, Tyler; Musen, Mark A | PLoS computational biology | 2012 | e1002827 | 23300417 |
| Landmark Prediction of Long Term Survival Incorporating Short Term Event Time Information. | Parast, Layla; Cheng, Su-Chun; Cai, Tianxi | Journal of the American Statistical Association | 2012 | 1492-1501 | 23293405 |
| Abnormalities of middle longitudinal fascicle and disorganization in patients with schizophrenia. | Asami, Takeshi; Saito, Yukiko; Whitford, Thomas J; Makris, Nikos; Niznikiewicz, Margaret; McCarley, Robert W; Shenton, Martha E; Kubicki, Marek | Schizophrenia research | 2013 Feb | 253-9 | 23290607 |
| Psychiatric co-morbidity is associated with increased risk of surgery in Crohn's disease. | Ananthakrishnan, A N; Gainer, V S; Perez, R G; Cai, T; Cheng, S-C; Savova, G; Chen, P; Szolovits, P; Xia, Z; De Jager, P L; Shaw, S Y; Churchill, S; Karlson, E W; Kohane, I; Perlis, R H; Plenge, R M; Murphy, S N; Liao, K P | Alimentary pharmacology & therapeutics | 2013 Feb | 445-54 | 23289600 |
| Learning a reliable estimate of the number of fiber directions in diffusion MRI. | Schultz, Thomas | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 493-500 | 23286167 |
| Spectral label fusion. | Wachinger, Christian; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 410-7 | 23286157 |
| Longitudinal image registration with non-uniform appearance change. | Csapo, Istvan; Davis, Brad; Shi, Yundi; Sanchez, Mar; Styner, Martin; Niethammer, Marc | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 280-8 | 23286141 |
| Topology preserving atlas construction from shape data without correspondence using sparse parameters. | Durrleman, Stanley; Prastawa, Marcel; Korenberg, Julie R; Joshi, Sarang; Trouve, Alain; Gerig, Guido | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 223-30 | 23286134 |
| Metamorphic geodesic regression. | Hong, Yi; Joshi, Sarang; Sanchez, Mar; Styner, Martin; Niethammer, Marc | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 197-205 | 23286131 |
| Group analysis of resting-state fMRI by hierarchical Markov random fields. | Liu, Wei; Awate, Suyash P; Fletcher, P Thomas | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 189-96 | 23286130 |
| A feature-based developmental model of the infant brain in structural MRI. | Toews, Matthew; Wells 3rd, William M; Zollei, Lilla | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2012; | 204-11 | 23286050 |
| Fast diffusion tensor registration with exact reorientation and regularization. | Li, Junning; Shi, Yonggang; Tran, Giang; Dinov, Ivo; Wang, Danny J J; Toga, Arthur W | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 138-45 | 23286042 |
| Analytic regularization of uniform cubic B-spline deformation fields. | Shackleford, James A; Yang, Qi; Lourenco, Ana M; Shusharina, Nadya; Kandasamy, Nagarajan; Sharp, Gregory C | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 122-9 | 23286040 |
| Analysis of longitudinal shape variability via subject specific growth modeling. | Fishbaugh, James; Prastawa, Marcel; Durrleman, Stanley; Piven, Joseph; Gerig, Guido; IBIS Network | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 731-8 | 23285617 |
| From brain connectivity models to identifying foci of a neurological disorder. | Venkataraman, Archana; Kubicki, Marek; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2012 | 715-22 | 23285615 |
| Common variants in psychiatric risk genes predict brain structure at birth. | Knickmeyer, Rebecca C; Wang, Jiaping; Zhu, Hongtu; Geng, Xiujuan; Woolson, Sandra; Hamer, Robert M; Konneker, Thomas; Lin, Weili; Styner, Martin; Gilmore, John H | Cerebral cortex (New York, N.Y. : 1991). | 2014 May; | 1230-46 | 23283688 |
| MicroRNA-centric measurement improves functional enrichment analysis of co-expressed and differentially expressed microRNA clusters. | Lee, Su Yeon; Sohn, Kyung-Ah; Kim, Ju Han | BMC genomics | 2012 | S17 | 23281707 |
| Regionally selective atrophy of subcortical structures in prodromal HD as revealed by statistical shape analysis. | Younes, Laurent; Ratnanather, J Tilak; Brown, Timothy; Aylward, Elizabeth; Nopoulos, Peg; Johnson, Hans; Magnotta, Vincent A; Paulsen, Jane S; Margolis, Russell L; Albin, Roger L; Miller, Michael I; Ross, Christopher A; and the PREDICT-HD Investigators an | Human brain mapping | 2012 Dec 20 | 23281100 | |
| OntoMaton: a bioportal powered ontology widget for Google Spreadsheets. | Maguire, Eamonn; Gonzalez-Beltran, Alejandra; Whetzel, Patricia L; Sansone, Susanna-Assunta; Rocca-Serra, Philippe | Bioinformatics (Oxford, England) | 2013 Feb 15 | 525-7 | 23267176 |
| The variance of identity-by-descent sharing in the Wright-Fisher model. | Carmi, Shai; Palamara, Pier Francesco; Vacic, Vladimir; Lencz, Todd; Darvasi, Ariel; Pe'er, Itsik | Genetics | 2013 Mar | 911-28 | 23267057 |
| Subgroup specific incremental value of new markers for risk prediction. | Zhou, Qian M; Zheng, Yingye; Cai, Tianxi | Lifetime data analysis | 2013 Apr | 142-69 | 23263882 |
| Rare, low-frequency, and common variants in the protein-coding sequence of biological candidate genes from GWASs contribute to risk of rheumatoid arthritis. | Diogo, Dorothee; Kurreeman, Fina; Stahl, Eli A; Liao, Katherine P; Gupta, Namrata; Greenberg, Jeffrey D; Rivas, Manuel A; Hickey, Brendan; Flannick, Jason; Thomson, Brian; Guiducci, Candace; Ripke, Stephan; Adzhubey, Ivan; Barton, Anne; Kremer, Joel M; Al | American journal of human genetics | 2013 Jan 10 | 15-27 | 23261300 |
| A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17. | Liu, Suli; Im, Hogune; Bairoch, Amos; Cristofanilli, Massimo; Chen, Rui; Deutsch, Eric W; Dalton, Stephen; Fenyo, David; Fanayan, Susan; Gates, Chris; Gaudet, Pascale; Hincapie, Marina; Hanash, Samir; Kim, Hoguen; Jeong, Seul-Ki; Lundberg, Emma; Mias, Geo | Journal of proteome research | 2013 Jan 4 | 45-57 | 23259914 |
| Tissue plasminogen activator prevents mortality from sulfur mustard analog-induced airway obstruction. | Veress, Livia A; Hendry-Hofer, Tara B; Loader, Joan E; Rioux, Jacqueline S; Garlick, Rhonda B; White, Carl W | American journal of respiratory cell and molecular biology | 2013 Apr | 439-47 | 23258228 |
| Fiber tractography based on diffusion tensor imaging compared with high-angular-resolution diffusion imaging with compressed sensing: initial experience. | Kuhnt, Daniela; Bauer, Miriam H A; Egger, Jan; Richter, Mirco; Kapur, Tina; Sommer, Jens; Merhof, Dorit; Nimsky, Christopher | Neurosurgery | 2013 Jan | 165-75 | 23254805 |
| Evaluating incremental values from new predictors with net reclassification improvement in survival analysis. | Zheng, Yingye; Parast, Layla; Cai, Tianxi; Brown, Marshall | Lifetime data analysis | 2012 Dec 20 | 23254468 | |
| To share or not to share: that is not the question. | Ohno-Machado, Lucila | Science translational medicine | 2012 Dec 19 | 165cm15 | 23253606 |
| Muscle contributions to fore-aft and vertical body mass center accelerations over a range of running speeds. | Hamner, Samuel R; Delp, Scott L | Journal of biomechanics | 2013 Feb 22 | 780-7 | 23246045 |
| A Randomized Response Model For Privacy Preserving Smart Metering. | Wang, Shuang; Cui, Lijuan; Que, Jialan; Choi, Dae-Hyun; Jiang, Xiaoqian; Cheng, Samuel; Xie, Le | IEEE transactions on smart grid | 2012 Sep | 1317-1324 | 23243488 |
| Sharing data for the public good and protecting individual privacy: informatics solutions to combine different goals. | Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2013 Jan 1 | 1 | 23243087 |
| Privacy-preserving heterogeneous health data sharing. | Mohammed, Noman; Jiang, Xiaoqian; Chen, Rui; Fung, Benjamin C M; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2013 May 1 | 462-9 | 23242630 |
| Pituitary adenoma volumetry with 3D Slicer. | Egger, Jan; Kapur, Tina; Nimsky, Christopher; Kikinis, Ron | PloS one | 2012 | e51788 | 23240062 |
| To milliseconds and beyond: challenges in the simulation of protein folding. | Lane, Thomas J; Shukla, Diwakar; Beauchamp, Kyle A; Pande, Vijay S | Current opinion in structural biology | 2013 Feb | 58-65 | 23237705 |
| Regional characterization of longitudinal DT-MRI to study white matter maturation of the early developing brain. | Sadeghi, Neda; Prastawa, Marcel; Fletcher, P Thomas; Wolff, Jason; Gilmore, John H; Gerig, Guido | NeuroImage | 2013 Mar | 236-47 | 23235270 |
| Associations of autoantibodies, autoimmune risk alleles, and clinical diagnoses from the electronic medical records in rheumatoid arthritis cases and non-rheumatoid arthritis controls. | Liao, Katherine P; Kurreeman, Fina; Li, Gang; Duclos, Grant; Murphy, Shawn; Guzman, Raul; Cai, Tianxi; Gupta, Namrata; Gainer, Vivian; Schur, Peter; Cui, Jing; Denny, Joshua C; Szolovits, Peter; Churchill, Susanne; Kohane, Isaac; Karlson, Elizabeth W; Ple | Arthritis and rheumatism | 2013 Mar | 571-81 | 23233247 |
| The plant ontology as a tool for comparative plant anatomy and genomic analyses. | Cooper, Laurel; Walls, Ramona L; Elser, Justin; Gandolfo, Maria A; Stevenson, Dennis W; Smith, Barry; Preece, Justin; Athreya, Balaji; Mungall, Christopher J; Rensing, Stefan; Hiss, Manuel; Lang, Daniel; Reski, Ralf; Berardini, Tanya Z; Li, Donghui; Huala | Plant & cell physiology | 2013 Feb | e1 | 23220694 |
| Generating fibre orientation maps in human heart models using Poisson interpolation. | Wong, Jonathan; Kuhl, Ellen | Computer methods in biomechanics and biomedical engineering | 2012 Dec 5 | 23210529 | |
| Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines. | Sarntivijai, Sirarat; Xiang, Zuoshuang; Shedden, Kerby A; Markel, Howard; Omenn, Gilbert S; Athey, Brian D; He, Yongqun | PloS one | 2012 | e49941 | 23209624 |
| A genome-scale RNA-interference screen identifies RRAS signaling as a pathologic feature of Huntington's disease. | Miller, John P; Yates, Bridget E; Al-Ramahi, Ismael; Berman, Ari E; Sanhueza, Mario; Kim, Eugene; de Haro, Maria; DeGiacomo, Francesco; Torcassi, Cameron; Holcomb, Jennifer; Gafni, Juliette; Mooney, Sean D; Botas, Juan; Ellerby, Lisa M; Hughes, Robert E | PLoS genetics | 2012 | e1003042 | 23209424 |
| Muscle contributions to vertical and fore-aft accelerations are altered in subjects with crouch gait. | Steele, Katherine M; Seth, Ajay; Hicks, Jennifer L; Schwartz, Michael H; Delp, Scott L | Gait & posture | 2013 May | 86-91 | 23200083 |
| ArrayExpress update--trends in database growth and links to data analysis tools. | Rustici, Gabriella; Kolesnikov, Nikolay; Brandizi, Marco; Burdett, Tony; Dylag, Miroslaw; Emam, Ibrahim; Farne, Anna; Hastings, Emma; Ison, Jon; Keays, Maria; Kurbatova, Natalja; Malone, James; Mani, Roby; Mupo, Annalisa; Pedro Pereira, Rui; Pilicheva, Ek | Nucleic acids research | 2013 Jan | D987-90 | 23193272 |
| PrePPI: a structure-informed database of protein-protein interactions. | Zhang, Qiangfeng Cliff; Petrey, Donald; Garzon, Jose Ignacio; Deng, Lei; Honig, Barry | Nucleic acids research | 2013 Jan | D828-33 | 23193263 |
| Toward an understanding of the short bone phenotype associated with multiple osteochondromas. | Jones, Kevin B; Datar, Manasi; Ravichandran, Sandhya; Jin, Huifeng; Jurrus, Elizabeth; Whitaker, Ross; Capecchi, Mario R | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2013 Apr | 651-7 | 23192691 |
| The Measurement of Local Variation in Shape. | Marquez, Eladio J; Cabeen, Ryan; Woods, Roger P; Houle, David | Evolutionary biology | 2012 Sep 1 | 419-439 | 23180896 |
| STK38 is a critical upstream regulator of MYC's oncogenic activity in human B-cell lymphoma. | Bisikirska, B C; Adam, S J; Alvarez, M J; Rajbhandari, P; Cox, R; Lefebvre, C; Wang, K; Rieckhof, G E; Felsher, D W; Califano, A | Oncogene | 2012 Nov 26 | 23178486 | |
| A fully implicit finite element method for bidomain models of cardiac electromechanics. | Dal, Husnu; Goktepe, Serdar; Kaliske, Michael; Kuhl, Ellen | Computer methods in applied mechanics and engineering | 2013 Jan 1 | 323-336 | 23175588 |
| Evaluating the predictive value of biomarkers with stratified case-cohort design. | Liu, Dandan; Cai, Tianxi; Zheng, Yingye | Biometrics | 2012 Dec | 1219-27 | 23173848 |
| Patellar maltracking is prevalent among patellofemoral pain subjects with patella alta: an upright, weightbearing MRI study. | Pal, Saikat; Besier, Thor F; Beaupre, Gary S; Fredericson, Michael; Delp, Scott L; Gold, Garry E | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2013 Mar | 448-57 | 23165335 |
| Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II. | Lu, Zhiyong; Hirschman, Lynette | Database : the journal of biological databases and curation | 2012 | bas043 | 23160416 |
| Collaborative software for traditional and translational research. | Berman, Ari E; Barnett, William K; Mooney, Sean D | Human genomics | 2012 | 21 | 23157911 |
| Feasibility of studying brain morphology in major depressive disorder with structural magnetic resonance imaging and clinical data from the electronic medical record: a pilot study. | Hoogenboom, Wouter S; Perlis, Roy H; Smoller, Jordan W; Zeng-Treitler, Qing; Gainer, Vivian S; Murphy, Shawn N; Churchill, Susanne E; Kohane, Isaac S; Shenton, Martha E; Iosifescu, Dan V | Psychiatry research | 2013 Mar 30 | 202-13 | 23149041 |
| White matter microstructural alterations in children with prenatal methamphetamine/polydrug exposure. | Colby, John B; Smith, Lynne; O'Connor, Mary J; Bookheimer, Susan Y; Van Horn, John D; Sowell, Elizabeth R | Psychiatry research | 2012 Nov 30 | 140-8 | 23149028 |
| Toe-in gait reduces the first peak knee adduction moment in patients with medial compartment knee osteoarthritis. | Shull, Pete B; Shultz, Rebecca; Silder, Amy; Dragoo, Jason L; Besier, Thor F; Cutkosky, Mark R; Delp, Scott L | Journal of biomechanics | 2013 Jan 4 | 122-8 | 23146322 |
| Differences in subcortical structures in young adolescents at familial risk for schizophrenia: a preliminary study. | Dougherty, Michael K; Gu, Hongbin; Bizzell, Joshua; Ramsey, Stacy; Gerig, Guido; Perkins, Diana O; Belger, Aysenil | Psychiatry research | 2012 Nov 30 | 68-74 | 23146250 |
| Longitudinal analysis of pain in patients with metastatic prostate cancer using natural language processing of medical record text. | Heintzelman, Norris H; Taylor, Robert J; Simonsen, Lone; Lustig, Roger; Anderko, Doug; Haythornthwaite, Jennifer A; Childs, Lois C; Bova, George Steven | Journal of the American Medical Informatics Association : JAMIA | 2013 Sep-Oct | 898-905 | 23144336 |
| Diverse types of genetic variation converge on functional gene networks involved in schizophrenia. | Gilman, Sarah R; Chang, Jonathan; Xu, Bin; Bawa, Tejdeep S; Gogos, Joseph A; Karayiorgou, Maria; Vitkup, Dennis | Nature neuroscience | 2012 Dec | 1723-8 | 23143521 |
| Localized differences in caudate and hippocampal shape are associated with schizophrenia but not antipsychotic type. | McClure, Robert K; Styner, Martin; Maltbie, Eric; Lieberman, Jeffrey A; Gouttard, Sylvain; Gerig, Guido; Shi, Xiaoyan; Zhu, Hongtu | Psychiatry research | 2013 Jan 30 | 1-10 | 23142194 |
| The influence of sodium- and calcium-regulatory hormone interventions on adipocytokines in obesity and diabetes. | Vaidya, Anand; Underwood, Patricia C; Annes, Justin P; Sun, Bei; Williams, Gordon H; Forman, John P; Williams, Jonathan S | Metabolism: clinical and experimental | 2013 Apr | 539-47 | 23142162 |
| Next Generation Sequence Analysis and Computational Genomics Using Graphical Pipeline Workflows. | Torri, Federica; Dinov, Ivo D; Zamanyan, Alen; Hobel, Sam; Genco, Alex; Petrosyan, Petros; Clark, Andrew P; Liu, Zhizhong; Eggert, Paul; Pierce, Jonathan; Knowles, James A; Ames, Joseph; Kesselman, Carl; Toga, Arthur W; Potkin, Steven G; Vawter, Marquis P | Genes | 2012 Aug 30 | 545-575 | 23139896 |
| Doubly Optimized Calibrated Support Vector Machine (DOC-SVM): an algorithm for joint optimization of discrimination and calibration. | Jiang, Xiaoqian; Menon, Aditya; Wang, Shuang; Kim, Jihoon; Ohno-Machado, Lucila | PloS one | 2012 | e48823 | 23139819 |
| Broadening instructional scope with network visualization. | Brandenburg, Marci D; Song, Jean | Journal of the Medical Library Association : JMLA | 2012 Oct | 313-6 | 23133334 |
| Drug Target Exploitable Structural Features of Adenylyl Cyclase Activity in Schistosoma mansoni. | Mbah, Andreas N; Kamga, Henri L; Awofolu, Omotayo R; Isokpehi, Raphael D | Drug target insights. | 2012; | 23133313 | |
| Mathematical modeling of collagen turnover in biological tissue. | Saez, Pablo; Pena, Estefania; Angel Martinez, Miguel; Kuhl, Ellen | Journal of mathematical biology | 2012 Nov 6 | NULL | 23129392 |
| Image registration using radial basis functions with adaptive radius. | Shusharina, Nadezhda; Sharp, Gregory | Medical physics | 2012 Nov | 6542-9 | 23127049 |
| Combing signals from spontaneous reports and electronic health records for detection of adverse drug reactions. | Harpaz, Rave; Vilar, Santiago; Dumouchel, William; Salmasian, Hojjat; Haerian, Krystl; Shah, Nigam H; Chase, Herbert S; Friedman, Carol | Journal of the American Medical Informatics Association : JAMIA. | 2013 May 1; | 413-9 | 23118093 |
| The structural, connectomic and network covariance of the human brain. | Irimia, Andrei; Van Horn, John D | NeuroImage | 2012 Oct 29 | 489-499 | 23116816 |
| Knowledge building insights on biomarkers of arsenic toxicity to keratinocytes and melanocytes. | Isokpehi, Raphael D; Udensi, Udensi K; Anyanwu, Matthew N; Mbah, Andreas N; Johnson, Matilda O; Edusei, Kafui; Bauer, Michael A; Hall, Roger A; Awofolu, Omotayo R | Biomarker insights. | 2012; | 23115478 | |
| Computational modelling of electrocardiograms: repolarisation and T-wave polarity in the human heart. | Hurtado, Daniel E; Kuhl, Ellen | Computer methods in biomechanics and biomedical engineering | 2012 Oct 31 | 23113842 | |
| Length distributions of identity by descent reveal fine-scale demographic history. | Palamara, Pier Francesco; Lencz, Todd; Darvasi, Ariel; Pe'er, Itsik | American journal of human genetics | 2012 Nov 2 | 809-22 | 23103233 |
| Nuclear pore component Nup98 is a potential tumor suppressor and regulates posttranscriptional expression of select p53 target genes. | Singer, Stephan; Zhao, Ruiying; Barsotti, Anthony M; Ouwehand, Anette; Fazollahi, Mina; Coutavas, Elias; Breuhahn, Kai; Neumann, Olaf; Longerich, Thomas; Pusterla, Tobias; Powers, Maureen A; Giles, Keith M; Leedman, Peter J; Hess, Jochen; Grunwald, David; | Molecular cell | 2012 Dec 14 | 799-810 | 23102701 |
| Tor1 regulates protein solubility in Saccharomyces cerevisiae. | Peters, Theodore W; Rardin, Matthew J; Czerwieniec, Gregg; Evani, Uday S; Reis-Rodrigues, Pedro; Lithgow, Gordon J; Mooney, Sean D; Gibson, Bradford W; Hughes, Robert E | Molecular biology of the cell | 2012 Dec | 4679-88 | 23097491 |
| The structure of the corpus callosum in obsessive compulsive disorder. | Di Paola, M; Luders, E; Rubino, I A; Siracusano, A; Manfredi, G; Girardi, P; Martinotti, G; Thompson, P M; Chou, Y-Y; Toga, A W; Caltagirone, C; Spalletta, G | European psychiatry : the journal of the Association of European Psychiatrists | 2013 Oct | 499-506 | 23078960 |
| On removing interpolation and resampling artifacts in rigid image registration. | Aganj, Iman; Yeo, Boon Thye Thomas; Sabuncu, Mert R; Fischl, Bruce | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. | 2013 Feb; | 816-27 | 23076044 |
| Multicenter reliability of diffusion tensor imaging. | Magnotta, Vincent A; Matsui, Joy T; Liu, Dawei; Johnson, Hans J; Long, Jeffrey D; Bolster Jr, Bradley D; Mueller, Bryon A; Lim, Kelvin; Mori, Susumu; Helmer, Karl G; Turner, Jessica A; Reading, Sarah; Lowe, Mark J; Aylward, Elizabeth; Flashman, Laura A; B | Brain connectivity. | 2012; | 345-55 | 23075313 |
| Detecting identity by descent and homozygosity mapping in whole-exome sequencing data. | Zhuang, Zhong; Gusev, Alexander; Cho, Judy; Pe'er, Itsik | PloS one | 2012 | e47618 | 23071825 |
| Efficient, Graph-based White Matter Connectivity from Orientation Distribution Functions via Multi-directional Graph Propagation. | Boucharin, Alexis; Oguz, Ipek; Vachet, Clement; Shi, Yundi; Sanchez, Mar; Styner, Martin | Proceedings of SPIE | 2011 | 79620S | 23066452 |
| Automated dispersion and orientation analysis for carbon nanotube reinforced polymer composites. | Gao, Yi; Li, Zhuo; Lin, Ziyin; Zhu, Liangjia; Tannenbaum, Allen; Bouix, Sylvain; Wong, C P | Nanotechnology | 2012 Nov 2 | 435706 | 23060008 |
| A rule based solution to co-reference resolution in clinical text. | Chen, Ping; Hinote, David; Chen, Guoqing | Journal of the American Medical Informatics Association : JAMIA | 2012 Oct 11 | 23059732 | |
| SHARE: system design and case studies for statistical health information release. | Gardner, James; Xiong, Li; Xiao, Yonghui; Gao, Jingjing; Post, Andrew R; Jiang, Xiaoqian; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2013 Jan 1 | 109-16 | 23059729 |
| Stretching skeletal muscle: chronic muscle lengthening through sarcomerogenesis. | Zollner, Alexander M; Abilez, Oscar J; Bol, Markus; Kuhl, Ellen | PloS one | 2012 | e45661 | 23049683 |
| An excess of deleterious variants in VEGF-A pathway genes in Down-syndrome-associated atrioventricular septal defects. | Ackerman, Christine; Locke, Adam E; Feingold, Eleanor; Reshey, Benjamin; Espana, Karina; Thusberg, Janita; Mooney, Sean; Bean, Lora J H; Dooley, Kenneth J; Cua, Clifford L; Reeves, Roger H; Sherman, Stephanie L; Maslen, Cheryl L | American journal of human genetics. | 2012 Oct 5; | 646-59 | 23040494 |
| A unified inference procedure for a class of measures to assess improvement in risk prediction systems with survival data. | Uno, Hajime; Tian, Lu; Cai, Tianxi; Kohane, Isaac S; Wei, L J | Statistics in medicine. | 2013 Jun 30; | 2430-42 | 23037800 |
| Comparative profiling of miRNA expression of lung adenocarcinoma cells in two-dimensional and three-dimensional cultures. | Li, Cui; Nguyen, Hong T; Zhuang, Yan; Lin, Zhen; Flemington, Erik K; Zhuo, Ying; Kantrow, Stephen P; Morris, Gilbert F; Sullivan, Deborah E; Shan, Bin | Gene | 2012 Dec 15 | 143-50 | 23036707 |
| LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types. | Kim, Jung H; Karnovsky, Alla; Mahavisno, Vasudeva; Weymouth, Terry; Pande, Manjusha; Dolinoy, Dana C; Rozek, Laura S; Sartor, Maureen A | BMC genomics | 2012 | 526 | 23033966 |
| Antidepressant response in patients with major depression exposed to NSAIDs: a pharmacovigilance study. | Gallagher, Patience J; Castro, Victor; Fava, Maurizio; Weilburg, Jeffrey B; Murphy, Shawn N; Gainer, Vivian S; Churchill, Susanne E; Kohane, Isaac S; Iosifescu, Dan V; Smoller, Jordan W; Perlis, Roy H | The American journal of psychiatry | 2012 Oct | 1065-72 | 23032386 |
| Adaptive prior probability and spatial temporal intensity change estimation for segmentation of the one-year-old human brain. | Kim, Sun Hyung; Fonov, Vladimir S; Dietrich, Cheryl; Vachet, Clement; Hazlett, Heather C; Smith, Rachel G; Graves, Michael M; Piven, Joseph; Gilmore, John H; Dager, Stephen R; McKinstry, Robert C; Paterson, Sarah; Evans, Alan C; Collins, D Louis; Gerig, G | Journal of neuroscience methods | 2013 Jan 15 | 43-55 | 23032117 |
| Changes in in vivo knee contact forces through gait modification. | Kinney, Allison L; Besier, Thor F; Silder, Amy; Delp, Scott L; D'Lima, Darryl D; Fregly, Benjamin J | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2013 Mar | 434-40 | 23027590 |
| Terminology representation guidelines for biomedical ontologies in the semantic web notations. | Tao, Cui; Pathak, Jyotishman; Solbrig, Harold R; Wei, Wei-Qi; Chute, Christopher G | Journal of biomedical informatics | 2013 Feb | 128-38 | 23026232 |
| Structure-based prediction of protein-protein interactions on a genome-wide scale. | Zhang, Qiangfeng Cliff; Petrey, Donald; Deng, Lei; Qiang, Li; Shi, Yu; Thu, Chan Aye; Bisikirska, Brygida; Lefebvre, Celine; Accili, Domenico; Hunter, Tony; Maniatis, Tom; Califano, Andrea; Honig, Barry | Nature | 2012 Oct 25 | 556-60 | 23023127 |
| Anisotropic conductivity of magnetic carbon nanotubes embedded in epoxy matrices. | Kim, Il Tae; Tannenbaum, Allen; Tannenbaum, Rina | Carbon | 2011 Jan | 54-61 | 23019381 |
| Neuropsychological variability, symptoms, and brain imaging in chronic schizophrenia. | Nestor, Paul G; Kubicki, Marek; Nakamura, Motoaki; Niznikiewicz, Margaret; Levitt, James J; Shenton, Martha E; McCarley, Robert W | Brain imaging and behavior | 2013 Mar | 68-76 | 23011383 |
| Imaging nigral pathology and clinical progression in Parkinson's disease. | Du, Guangwei; Lewis, Mechelle M; Sen, Suman; Wang, Jianli; Shaffer, Michele L; Styner, Martin; Yang, Qing X; Huang, Xuemei | Movement disorders : official journal of the Movement Disorder Society. | 2012 Nov; | 23008179 | |
| Setting up an intronic miRNA database. | Hinske, Ludwig Christian; Heyn, Jens; Galante, Pedro A F; Ohno-Machado, Lucila; Kreth, Simone | Methods in molecular biology (Clifton, N.J.) | 2013 | 69-76 | 23007499 |
| Extended Broca's area in the functional connectome of language in adults: combined cortical and subcortical single-subject analysis using fMRI and DTI tractography. | Lemaire, Jean-Jacques; Golby, Alexandra; Wells 3rd, William M; Pujol, Sonia; Tie, Yanmei; Rigolo, Laura; Yarmarkovich, Alexander; Pieper, Steve; Westin, Carl-Fredrik; Jolesz, Ferenc; Kikinis, Ron | Brain topography | 2013 Jul | 428-41 | 23001727 |
| Comprehensive molecular portraits of human breast tumours. | Cancer Genome Atlas Network | Nature | 2012 Oct 4 | 61-70 | 23000897 |
| 3D finite element models of shoulder muscles for computing lines of actions and moment arms. | Webb, Joshua D; Blemker, Silvia S; Delp, Scott L | Computer methods in biomechanics and biomedical engineering | 2012 Sep 20 | NULL | 22994141 |
| Associations between white matter microstructure and infants' working memory. | Short, Sarah J; Elison, Jed T; Goldman, Barbara Davis; Styner, Martin; Gu, Hongbin; Connelly, Mark; Maltbie, Eric; Woolson, Sandra; Lin, Weili; Gerig, Guido; Reznick, J Steven; Gilmore, John H | NeuroImage | 2013 Jan 1 | 156-66 | 22989623 |
| Salt sensitivity of blood pressure is associated with polymorphisms in the sodium-bicarbonate cotransporter. | Carey, Robert M; Schoeffel, Cynthia D; Gildea, John J; Jones, John E; McGrath, Helen E; Gordon, Lindsay N; Park, Min Jeong; Sobota, Rafal S; Underwood, Patricia C; Williams, Jonathan; Sun, Bei; Raby, Benjamin; Lasky-Su, Jessica; Hopkins, Paul N; Adler, Ga | Hypertension | 2012 Nov | 1359-66 | 22987918 |
| Global probabilistic annotation of metabolic networks enables enzyme discovery. | Plata, German; Fuhrer, Tobias; Hsiao, Tzu-Lin; Sauer, Uwe; Vitkup, Dennis | Nature chemical biology | 2012 Oct | 848-54 | 22960854 |
| How much muscle strength is required to walk in a crouch gait? | Steele, Katherine M; van der Krogt, Marjolein M; Schwartz, Michael H; Delp, Scott L | Journal of biomechanics | 2012 Oct 11 | 2564-9 | 22959837 |
| The role of TGF-ýý and myofibroblasts in the arteritis of Kawasaki disease. | Shimizu, Chisato; Oharaseki, Toshiaki; Takahashi, Kei; Kottek, Aubri; Franco, Alessandra; Burns, Jane C | Human pathology | 2013 Feb | 189-98 | 22955109 |
| In-bore setup and software for 3T MRI-guided transperineal prostate biopsy. | Tokuda, Junichi; Tuncali, Kemal; Iordachita, Iulian; Song, Sang-Eun; Fedorov, Andriy; Oguro, Sota; Lasso, Andras; Fennessy, Fiona M; Tempany, Clare M; Hata, Nobuhiko | Physics in medicine and biology | 2012 Sep 21 | 5823-40 | 22951350 |
| Calibration of multiple in silico tools for predicting pathogenicity of mismatch repair gene missense substitutions. | Thompson, Bryony A; Greenblatt, Marc S; Vallee, Maxime P; Herkert, Johanna C; Tessereau, Chloe; Young, Erin L; Adzhubey, Ivan A; Li, Biao; Bell, Russell; Feng, Bingjian; Mooney, Sean D; Radivojac, Predrag; Sunyaev, Shamil R; Frebourg, Thierry; Hofstra, Ro | Human mutation. | 2013 Jan; | 255-65 | 22949387 |
| Nanoinformatics: developing new computing applications for nanomedicine. | Maojo, V; Fritts, M; Martin-Sanchez, F; De la Iglesia, D; Cachau, R E; Garcia-Remesal, M; Crespo, J; Mitchell, J A; Anguita, A; Baker, N; Barreiro, J M; Benitez, S E; De la Calle, G; Facelli, J C; Ghazal, P; Geissbuhler, A; Gonzalez-Nilo, F; Graf, N; Gran | Computing in science & engineering | 2012 Jun 1 | 521-539 | 22942787 |
| Nanoinformatics: developing new computing applications for nanomedicine. | Maojo, V; Fritts, M; Martin-Sanchez, F; De la Iglesia, D; Cachau, R E; Garcia-Remesal, M; Crespo, J; Mitchell, J A; Anguita, A; Baker, N; Barreiro, J M; Benitez, S E; De la Calle, G; Facelli, J C; Ghazal, P; Geissbuhler, A; Gonzalez-Nilo, F; Graf, N; Grangeat, P; Hermosilla, I; Hussein, R; Kern, J; Koch, S; Legre, Y; Lopez-Alonso, V; Lopez-Campos, G; Milanesi, L; Moustakis, V; Munteanu, C; Otero, P; Pazos, A; Perez-Rey, D; Potamias, G; Sanz, F; Kulikowski, C | Computing in science & engineering | 2012 Jun 1 | 521-539 | 22942787 |
| Designing a public square for research computing. | Masys, Daniel R; Harris, Paul A; Fearn, Paul A; Kohane, Isaac S | Science translational medicine | 2012 Aug 29 | 149fs32 | 22932220 |
| GAB2 induces tumor angiogenesis in NRAS-driven melanoma. | Yang, Y; Wu, J; Demir, A; Castillo-Martin, M; Melamed, R D; Zhang, G; Fukunaga-Kanabis, M; Perez-Lorenzo, R; Zheng, B; Silvers, D N; Brunner, G; Wang, S; Rabadan, R; Cordon-Cardo, C; Celebi, J T | Oncogene | 2013 Aug 1 | 3627-37 | 22926523 |
| Frontiers in growth and remodeling. | Menzel, Andreas; Kuhl, Ellen | Mechanics research communications | 2012 Jun 1 | 1-14 | 22919118 |
| Utilizing the integrated difference of two survival functions to quantify the treatment contrast for designing, monitoring, and analyzing a comparative clinical study. | Zhao, Lihui; Tian, Lu; Uno, Hajime; Solomon, Scott D; Pfeffer, Marc A; Schindler, Jerald S; Wei, Lee Jen | Clinical trials (London, England) | 2012 Oct | 570-7 | 22914867 |
| A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers. | Palmer, Nathan P; Schmid, Patrick R; Berger, Bonnie; Kohane, Isaac S | Genome biology. | 2012; | R71 | 22909066 |
| 3-T MR-guided brachytherapy for gynecologic malignancies. | Kapur, Tina; Egger, Jan; Damato, Antonio; Schmidt, Ehud J; Viswanathan, Akila N | Magnetic resonance imaging | 2012 Nov | 1279-90 | 22898699 |
| Translational bioinformatics embraces big data. | Shah, N H | Yearbook of medical informatics | 2012 | 130-4 | 22890354 |
| Contributions of muscles to mediolateral ground reaction force over a range of walking speeds. | John, Chand T; Seth, Ajay; Schwartz, Michael H; Delp, Scott L | Journal of biomechanics | 2012 Sep 21 | 2438-43 | 22884038 |
| North African Jewish and non-Jewish populations form distinctive, orthogonal clusters. | Campbell, Christopher L; Palamara, Pier F; Dubrovsky, Maya; Botigue, Laura R; Fellous, Marc; Atzmon, Gil; Oddoux, Carole; Pearlman, Alexander; Hao, Li; Henn, Brenna M; Burns, Edward; Bustamante, Carlos D; Comas, David; Friedman, Eitan; Pe'er, Itsik; Ostre | Proceedings of the National Academy of Sciences of the United States of America | 2012 Aug 21 | 13865-70 | 22869716 |
| Pharmacokinetics and pharmacodynamics of oral artesunate monotherapy in patients with uncomplicated Plasmodium falciparum malaria in western Cambodia. | Saunders, David; Khemawoot, Phisit; Vanachayangkul, Pattaraporn; Siripokasupkul, Raveewan; Bethell, Delia; Tyner, Stuart; Se, Youry; Rutvisuttinunt, Wiriya; Sriwichai, Sabaithip; Chanthap, Lon; Lin, Jessica; Timmermans, Ans; Socheat, Doung; Ringwald, Pascal; Noedl, Harald; Smith, Bryan; Fukuda, Mark; Teja-Isavadharm, Paktiya | Antimicrobial agents and chemotherapy. | 2012 Nov; | 22869581 | |
| Nonmodulation as the mechanism for salt sensitivity of blood pressure in individuals with hypertension and type 2 diabetes mellitus. | Underwood, Patricia C; Chamarthi, Bindu; Williams, Jonathan S; Vaidya, Anand; Garg, Rajesh; Adler, Gail K; Grotzke, Marissa P; Staskus, Gitana; Wadwekar, Devendra; Hopkins, Paul N; Ferri, Claudio; McCall, Anthony; McClain, Donald; Williams, Gordon H | The Journal of clinical endocrinology and metabolism | 2012 Oct | 3775-82 | 22865897 |
| Reduced fractional anisotropy and axial diffusivity in white matter in 22q11.2 deletion syndrome: a pilot study. | Kikinis, Z; Asami, T; Bouix, S; Finn, C T; Ballinger, T; Tworog-Dube, E; Kucherlapati, R; Kikinis, R; Shenton, M E; Kubicki, M | Schizophrenia research | 2012 Oct | 35-9 | 22863550 |
| Large-scale evaluation of automated clinical note de-identification and its impact on information extraction. | Deleger, Louise; Molnar, Katalin; Savova, Guergana; Xia, Fei; Lingren, Todd; Li, Qi; Marsolo, Keith; Jegga, Anil; Kaiser, Megan; Stoutenborough, Laura; Solti, Imre | Journal of the American Medical Informatics Association : JAMIA. | 2013 Jan 01; | 22859645 | |
| Emergence of fatal avian influenza in New England harbor seals. | Anthony, S J; St Leger, J A; Pugliares, K; Ip, H S; Chan, J M; Carpenter, Z W; Navarrete-Macias, I; Sanchez-Leon, M; Saliki, J T; Pedersen, J; Karesh, W; Daszak, P; Rabadan, R; Rowles, T; Lipkin, W I | mBio | 2012 | e00166-12 | 22851656 |
| Ontologies as integrative tools for plant science. | Walls, Ramona L; Athreya, Balaji; Cooper, Laurel; Elser, Justin; Gandolfo, Maria A; Jaiswal, Pankaj; Mungall, Christopher J; Preece, Justin; Rensing, Stefan; Smith, Barry; Stevenson, Dennis W | American journal of botany | 2012 Aug | 1263-75 | 22847540 |
| A Perturbation Method for Inference on Regularized Regression Estimates. | Minnier, Jessica; Tian, Lu; Cai, Tianxi | Journal of the American Statistical Association | 2011 Jan 1 | 1371-1382 | 22844171 |
| A role for ephrin-A5 in axonal sprouting, recovery, and activity-dependent plasticity after stroke. | Overman, Justine J; Clarkson, Andrew N; Wanner, Ina B; Overman, William T; Eckstein, Ilya; Maguire, Jaime L; Dinov, Ivo D; Toga, Arthur W; Carmichael, S Thomas | Proceedings of the National Academy of Sciences of the United States of America | 2012 Aug 14 | E2230-9 | 22837401 |
| Transforming fusions of FGFR and TACC genes in human glioblastoma. | Singh, Devendra; Chan, Joseph Minhow; Zoppoli, Pietro; Niola, Francesco; Sullivan, Ryan; Castano, Angelica; Liu, Eric Minwei; Reichel, Jonathan; Porrati, Paola; Pellegatta, Serena; Qiu, Kunlong; Gao, Zhibo; Ceccarelli, Michele; Riccardi, Riccardo; Brat, D | Science (New York, N.Y.) | 2012 Sep 7 | 1231-5 | 22837387 |
| B-Raf activation cooperates with PTEN loss to drive c-Myc expression in advanced prostate cancer. | Wang, Jingqiang; Kobayashi, Takashi; Floc'h, Nicolas; Kinkade, Carolyn Waugh; Aytes, Alvaro; Dankort, David; Lefebvre, Celine; Mitrofanova, Antonina; Cardiff, Robert D; McMahon, Martin; Califano, Andrea; Shen, Michael M; Abate-Shen, Cory | Cancer research | 2012 Sep 15 | 4765-76 | 22836754 |
| Leveraging models of cell regulation and GWAS data in integrative network-based association studies. | Califano, Andrea; Butte, Atul J; Friend, Stephen; Ideker, Trey; Schadt, Eric | Nature genetics | 2012 Aug | 841-7 | 22836096 |
| Mining the pharmacogenomics literature--a survey of the state of the art. | Hahn, Udo; Cohen, K Bretonnel; Garten, Yael; Shah, Nigam H | Briefings in bioinformatics | 2012 Jul | 460-94 | 22833496 |
| A 3D interactive multi-object segmentation tool using local robust statistics driven active contours. | Gao, Yi; Kikinis, Ron; Bouix, Sylvain; Shenton, Martha; Tannenbaum, Allen | Medical image analysis | 2012 Aug | 1216-27 | 22831773 |
| How many neutrophils are enough (redux, redux)? | Silverstein, Samuel C; Rabadan, Raul | The Journal of clinical investigation | 2012 Aug 1 | 2776-9 | 22820286 |
| Comparative protein interactomics of neuroglobin and myoglobin. | Haines, Bryan A; Davis, Darcy A; Zykovich, Artem; Peng, Botao; Rao, Rammohan; Mooney, Sean D; Jin, Kunlin; Greenberg, David A | Journal of neurochemistry | 2012 Oct | 192-8 | 22816983 |
| Dual targeting of the Akt/mTOR signaling pathway inhibits castration-resistant prostate cancer in a genetically engineered mouse model. | Floc'h, Nicolas; Kinkade, Carolyn Waugh; Kobayashi, Takashi; Aytes, Alvaro; Lefebvre, Celine; Mitrofanova, Antonina; Cardiff, Robert D; Califano, Andrea; Shen, Michael M; Abate-Shen, Cory | Cancer research | 2012 Sep 1 | 4483-93 | 22815528 |
| Wisdom of crowds for robust gene network inference. | Marbach, Daniel; Costello, James C; Kuffner, Robert; Vega, Nicole M; Prill, Robert J; Camacho, Diogo M; Allison, Kyle R; DREAM5 Consortium; Kellis, Manolis; Collins, James J; Stolovitzky, Gustavo | Nature methods | 2012 Aug | 796-804 | 22796662 |
| Human middle longitudinal fascicle: variations in patterns of anatomical connections. | Makris, N; Preti, M G; Asami, T; Pelavin, P; Campbell, B; Papadimitriou, G M; Kaiser, J; Baselli, G; Westin, C F; Shenton, M E; Kubicki, M | Brain structure & function | 2012 Jul 11 | 22782432 | |
| Using domain knowledge and domain-inspired discourse model for coreference resolution for clinical narratives. | Jindal, Prateek; Roth, Dan | Journal of the American Medical Informatics Association : JAMIA | 2013 Mar-Apr | 356-62 | 22781192 |
| Context-specific ontology integration: a bayesian approach. | Marwah, Kshitij; Katzin, Dustin; Zollanvari, Amin; Noy, Natalya F; Ramoni, Marco; Alterovitz, Gil | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2012; | 22779057 | |
| Analyzing patterns of drug use in clinical notes for patient safety. | Lependu, Paea; Liu, Yi; Iyer, Srinivasan; Udell, Madeleine R; Shah, Nigam H | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2012; | 22779054 | |
| Using temporal patterns in medical records to discern adverse drug events from indications. | Liu, Yi; Lependu, Paea; Iyer, Srinivasan; Shah, Nigam H | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2012; | 22779050 | |
| Formal concept analysis of disease similarity. | Keller, Benjamin J; Eichinger, Felix; Kretzler, Matthias | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2012; | 22779049 | |
| Semantator: annotating clinical narratives with semantic web ontologies. | Song, Dezhao; Chute, Christopher G; Tao, Cui | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2012; | 22779043 | |
| Computational Optogenetics: A Novel Continuum Framework for the Photoelectrochemistry of Living Systems. | Wong, Jonathan; Abilez, Oscar J; Kuhl, Ellen | Journal of the mechanics and physics of solids | 2012 Jun 1 | 1158-1178 | 22773861 |
| 3D Slicer as an image computing platform for the Quantitative Imaging Network. | Fedorov, Andriy; Beichel, Reinhard; Kalpathy-Cramer, Jayashree; Finet, Julien; Fillion-Robin, Jean-Christophe; Pujol, Sonia; Bauer, Christian; Jennings, Dominique; Fennessy, Fiona; Sonka, Milan; Buatti, John; Aylward, Stephen; Miller, James V; Pieper, Ste | Magnetic resonance imaging | 2012 Nov | 1323-41 | 22770690 |
| Ultrafast genome-wide scan for SNP-SNP interactions in common complex disease. | Prabhu, Snehit; Pe'er, Itsik | Genome research | 2012 Nov | 2230-40 | 22767386 |
| Analysis of high-throughput screening assays using cluster enrichment. | Pu, Minya; Hayashi, Tomoko; Cottam, Howard; Mulvaney, Joseph; Arkin, Michelle; Corr, Maripat; Carson, Dennis; Messer, Karen | Statistics in medicine | 2012 Dec 30 | 4175-89 | 22763983 |
| Reviewing social media use by clinicians. | von Muhlen, Marcio; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 777-81 | 22759618 |
| Filtering in the diffeomorphism group and the registration of point sets. | Gao, Yi; Rathi, Yogesh; Bouix, Sylvain; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 2012 Oct | 4383-96 | 22752129 |
| Genetic correction of Huntington's disease phenotypes in induced pluripotent stem cells. | An, Mahru C; Zhang, Ningzhe; Scott, Gary; Montoro, Daniel; Wittkop, Tobias; Mooney, Sean; Melov, Simon; Ellerby, Lisa M | Cell stem cell. | 2012 Aug 3; | 253-63 | 22748967 |
| Identifying genetic marker sets associated with phenotypes via an efficient adaptive score test. | Cai, Tianxi; Lin, Xihong; Carroll, Raymond J | Biostatistics (Oxford, England). | 2012 Sep; | 22734045 | |
| Semiparametric Bayesian local functional models for diffusion tensor tract statistics. | Hua, Zhaowei; Dunson, David B; Gilmore, John H; Styner, Martin A; Zhu, Hongtu | NeuroImage | 2012 Oct 15 | 460-74 | 22732565 |
| The coming age of data-driven medicine: translational bioinformatics' next frontier. | Shah, Nigam H; Tenenbaum, Jessica D | Journal of the American Medical Informatics Association : JAMIA | 2012 Jun | e2-4 | 22718035 |
| Endoscopic image analysis in semantic space. | Kwitt, R; Vasconcelos, N; Rasiwasia, N; Uhl, A; Davis, B; Hafner, M; Wrba, F | Medical image analysis | 2012 Oct | 1415-22 | 22717411 |
| Genetics insights into the pathogenesis of Kawasaki disease. | Burns, Jane C; Newburger, Jane W | Circulation. Cardiovascular genetics | 2012 Jun | 277-8 | 22715279 |
| Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. | Jonnalagadda, Siddhartha Reddy; Li, Dingcheng; Sohn, Sunghwan; Wu, Stephen Tze-Inn; Wagholikar, Kavishwar; Torii, Manabu; Liu, Hongfang | Journal of the American Medical Informatics Association : JAMIA. | 2012 Sep-Oct; | 867-74 | 22707745 |
| Active learning for clinical text classification: is it better than random sampling? | Figueroa, Rosa L; Zeng-Treitler, Qing; Ngo, Long H; Goryachev, Sergey; Wiechmann, Eduardo P | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 809-16 | 22707743 |
| DEFOG: discrete enrichment of functionally organized genes. | Wittkop, Tobias; Berman, Ari E; Fleisch, K Mathew; Mooney, Sean D | Integrative biology : quantitative biosciences from nano to macro | 2012 Jul | 795-804 | 22706384 |
| Bioinformatics advances in saliva diagnostics. | Ai, Ji-Ye; Smith, Barry; Wong, David T W | International journal of oral science. | 2012 Jun; | 85-7 | 22699264 |
| Characteristics associated with improved knee extension after strength training for individuals with cerebral palsy and crouch gait. | Steele, K M; Damiano, D L; Eek, M N; Unger, M; Delp, S L | Journal of pediatric rehabilitation medicine | 2012 | 99-106 | 22699100 |
| A survey of informatics platforms that enable distributed comparative effectiveness research using multi-institutional heterogenous clinical data. | Sittig, Dean F; Hazlehurst, Brian L; Brown, Jeffrey; Murphy, Shawn; Rosenman, Marc; Tarczy-Hornoch, Peter; Wilcox, Adam B | Medical care | 2012 Jul | S49-59 | 22692259 |
| Brain volume findings in 6-month-old infants at high familial risk for autism. | Hazlett, Heather Cody; Gu, Hongbin; McKinstry, Robert C; Shaw, Dennis W W; Botteron, Kelly N; Dager, Stephen R; Styner, Martin; Vachet, Clement; Gerig, Guido; Paterson, Sarah J; Schultz, Robert T; Estes, Annette M; Evans, Alan C; Piven, Joseph; IBIS Netwo | The American journal of psychiatry | 2012 Jun | 601-8 | 22684595 |
| Polymorphisms in the serum- and glucocorticoid-inducible kinase 1 gene are associated with blood pressure and renin response to dietary salt intake. | Rao, A D; Sun, B; Saxena, A; Hopkins, P N; Jeunemaitre, X; Brown, N J; Adler, G K; Williams, J S | Journal of human hypertension | 2013 Mar | 176-80 | 22648267 |
| Structural brain atlases: design, rationale, and applications in normal and pathological cohorts. | Mandal, Pravat K; Mahajan, Rashima; Dinov, Ivo D | Journal of Alzheimer's disease : JAD | 2012 | S169-88 | 22647262 |
| Image registration for targeted MRI-guided transperineal prostate biopsy. | Fedorov, Andriy; Tuncali, Kemal; Fennessy, Fiona M; Tokuda, Junichi; Hata, Nobuhiko; Wells, William M; Kikinis, Ron; Tempany, Clare M | Journal of magnetic resonance imaging : JMRI | 2012 Oct | 987-92 | 22645031 |
| Obstetric complications and risk for conversion to psychosis among individuals at high clinical risk. | Mittal, Vijay A; Willhite, Rachael; Daley, Melita; Bearden, Carrie E; Niendam, Tara; Ellman, Lauren M; Cannon, Tyrone D | Early intervention in psychiatry | 2009 Aug | 226-30 | 22640387 |
| Template-cut: a pattern-based segmentation paradigm. | Egger, Jan; Freisleben, Bernd; Nimsky, Christopher; Kapur, Tina | Scientific reports | 2012 | 420 | 22639728 |
| Towards automatic diabetes case detection and ABCS protocol compliance assessment. | Mishra, Ninad K; Son, Roderick Y; Arnzen, James J | Clinical medicine & research | 2012 Aug | 106-21 | 22634542 |
| Whole brain resting state functional connectivity abnormalities in schizophrenia. | Venkataraman, Archana; Whitford, Thomas J; Westin, Carl-Fredrik; Golland, Polina; Kubicki, Marek | Schizophrenia research | 2012 Aug | 7-12 | 22633528 |
| Mapping connectivity damage in the case of Phineas Gage. | Van Horn, John Darrell; Irimia, Andrei; Torgerson, Carinna M; Chambers, Micah C; Kikinis, Ron; Toga, Arthur W | PloS one | 2012 | e37454 | 22616011 |
| A supervised framework for resolving coreference in clinical records. | Rink, Bryan; Roberts, Kirk; Harabagiu, Sanda M | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 875-82 | 22610493 |
| Machine learning-based coreference resolution of concepts in clinical documents. | Ware, Henry; Mullett, Charles J; Jagannathan, Vasudevan; El-Rawas, Oussama | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 883-7 | 22582205 |
| Central nervous system endoplasmic reticulum stress in a murine model of type 2 diabetes. | Sims-Robinson, C; Zhao, S; Hur, J; Feldman, E L | Diabetologia | 2012 Aug | 2276-84 | 22581041 |
| Predicting the metabolic cost of incline walking from muscle activity and walking mechanics. | Silder, Amy; Besier, Thor; Delp, Scott L | Journal of biomechanics | 2012 Jun 26 | 1842-9 | 22578744 |
| SRM targeted proteomics in search for biomarkers of HCV-induced progression of fibrosis to cirrhosis in HALT-C patients. | Qin, Shizhen; Zhou, Yong; Lok, Anna S; Tsodikov, Alex; Yan, Xiaowei; Gray, Li; Yuan, Min; Moritz, Robert L; Galas, David; Omenn, Gilbert S; Hood, Leroy | Proteomics | 2012 Apr | 1244-52 | 22577025 |
| The microRNA expression associated with morphogenesis of breast cancer cells in three-dimensional organotypic culture. | Nguyen, Hong T; Li, Cui; Lin, Zhen; Zhuang, Yan; Flemington, Erik K; Burow, Matthew E; Lin, Yi; Shan, Bin | Oncology reports | 2012 Jul | 117-26 | 22576799 |
| Recognition of medication information from discharge summaries using ensembles of classifiers. | Doan, Son; Collier, Nigel; Xu, Hua; Pham, Hoang Duy; Tu, Minh Phuong | BMC medical informatics and decision making | 2012 | 36 | 22564405 |
| Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. | Dai, Hong-Jie; Chen, Chun-Yu; Wu, Chi-Yang; Lai, Po-Ting; Tsai, Richard Tzong-Han; Hsu, Wen-Lian | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 888-96 | 22556185 |
| Bioinformatics and variability in drug response: a protein structural perspective. | Lahti, Jennifer L; Tang, Grace W; Capriotti, Emidio; Liu, Tianyun; Altman, Russ B | Journal of the Royal Society, Interface / the Royal Society. | 2012 Jul 7; | 1409-37 | 22552919 |
| Comparison of MRI and ýýýýýF-NaF PET/CT in patients with patellofemoral pain. | Draper, Christine E; Quon, Andrew; Fredericson, Michael; Besier, Thor F; Delp, Scott L; Beaupre, Gary S; Gold, Garry E | Journal of magnetic resonance imaging : JMRI | 2012 Oct | 928-32 | 22549985 |
| Novel data-mining methodologies for adverse drug event discovery and analysis. | Harpaz, R; DuMouchel, W; Shah, N H; Madigan, D; Ryan, P; Friedman, C | Clinical pharmacology and therapeutics | 2012 Jun | 1010-21 | 22549283 |
| Evolutionary molecular medicine. | Nesse, Randolph M; Ganten, Detlev; Gregory, T Ryan; Omenn, Gilbert S | Journal of molecular medicine (Berlin, Germany) | 2012 May | 509-22 | 22544168 |
| Crouched posture maximizes ground reaction forces generated by muscles. | Hoang, Hoa X; Reinbolt, Jeffrey A | Gait & posture | 2012 Jul | 405-8 | 22542242 |
| Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes. | Lependu, Paea; Iyer, Srinivasan V; Fairon, Cédrick; Shah, Nigam H | Journal of biomedical semantics. | 2012 Apr 24; | 22541596 | |
| Limbic system white matter microstructure and long-term treatment outcome in major depressive disorder: a diffusion tensor imaging study using legacy data. | Hoogenboom, Wouter S; Perlis, Roy H; Smoller, Jordan W; Zeng-Treitler, Qing; Gainer, Vivian S; Murphy, Shawn N; Churchill, Susanne E; Kohane, Isaac S; Shenton, Martha E; Iosifescu, Dan V | The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry. | 2014 Feb; | 122-34 | 22540406 |
| Vitamin D3 therapy corrects the tissue sensitivity to angiotensin ii akin to the action of a converting enzyme inhibitor in obese hypertensives: an interventional study. | Vaidya, Anand; Sun, Bei; Larson, Carol; Forman, John P; Williams, Jonathan S | The Journal of clinical endocrinology and metabolism | 2012 Jul | 2456-65 | 22539586 |
| Genome-wide association identifies the T gene as a novel asthma pharmacogenetic locus. | Tantisira, Kelan G; Damask, Amy; Szefler, Stanley J; Schuemann, Brooke; Markezich, Amy; Su, Jessica; Klanderman, Barbara; Sylvia, Jody; Wu, Rongling; Martinez, Fernando; Boushey, Homer A; Chinchilli, Vernon M; Mauger, Dave; Weiss, Scott T; Israel, Elliot; | American journal of respiratory and critical care medicine | 2012 Jun 15 | 1286-91 | 22538805 |
| THINK Back: KNowledge-based Interpretation of High Throughput data. | Farfan, Fernando; Ma, Jun; Sartor, Maureen A; Michailidis, George; Jagadish, Hosagrahar V | BMC bioinformatics | 2012 | S4 | 22536867 |
| Lysine-specific demethylase 1: an epigenetic regulator of salt-sensitive hypertension. | Williams, Jonathan S; Chamarthi, Bindu; Goodarzi, Mark O; Pojoga, Luminita H; Sun, Bei; Garza, Amanda E; Raby, Benjamin A; Adler, Gail K; Hopkins, Paul N; Brown, Nancy J; Jeunemaitre, Xavier; Ferri, Claudio; Fang, Rui; Leonor, Thiago; Cui, Jinrui; Guo, Xi | American journal of hypertension | 2012 Jul | 812-7 | 22534796 |
| Functional organization and its implication in evolution of the human protein-protein interaction network. | Zhao, Yiqiang; Mooney, Sean D | BMC genomics | 2012 | 150 | 22530615 |
| An image analysis toolbox for high-throughput C. elegans assays. | Wahlby, Carolina; Kamentsky, Lee; Liu, Zihan H; Riklin-Raviv, Tammy; Conery, Annie L; O'Rourke, Eyleen J; Sokolnicki, Katherine L; Visvikis, Orane; Ljosa, Vebjorn; Irazoqui, Javier E; Golland, Polina; Ruvkun, Gary; Ausubel, Frederick M; Carpenter, Anne E | Nature methods | 2012 Jul | 714-6 | 22522656 |
| Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4. | Dapito, Dianne H; Mencin, Ali; Gwak, Geum-Youn; Pradere, Jean-Philippe; Jang, Myoung-Kuk; Mederacke, Ingmar; Caviglia, Jorge M; Khiabanian, Hossein; Adeyemi, Adebowale; Bataller, Ramon; Lefkowitch, Jay H; Bower, Maureen; Friedman, Richard; Sartor, R Balfo | Cancer cell | 2012 Apr 17 | 504-16 | 22516259 |
| The co-morbidity burden of children and young adults with autism spectrum disorders. | Kohane, Isaac S; McMurry, Andrew; Weber, Griffin; MacFadden, Douglas; Rappaport, Leonard; Kunkel, Louis; Bickel, Jonathan; Wattanasin, Nich; Spence, Sarah; Murphy, Shawn; Churchill, Susanne | PloS one | 2012 | e33224 | 22511918 |
| Protecting count queries in study design. | Vinterbo, Staal A; Sarwate, Anand D; Boxwala, Aziz A | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 750-7 | 22511018 |
| Grid Binary LOgistic REgression (GLORE): building shared models without sharing data. | Wu, Yuan; Jiang, Xiaoqian; Kim, Jihoon; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 758-64 | 22511014 |
| Quantitative tract-based white matter development from birth to age 2years. | Geng, Xiujuan; Gouttard, Sylvain; Sharma, Anuja; Gu, Hongbin; Styner, Martin; Lin, Weili; Gerig, Guido; Gilmore, John H | NeuroImage | 2012 Jul 2 | 542-57 | 22510254 |
| Particle Filtering with Region-based Matching for Tracking of Partially Occluded and Scaled Targets. | Nakhmani, Arie; Tannenbaum, Allen | SIAM journal on imaging sciences | 2011 Mar 9 | 220-242 | 22506088 |
| A classification approach to coreference in discharge summaries: 2011 i2b2 challenge. | Xu, Yan; Liu, Jiahua; Wu, Jiajun; Wang, Yue; Tu, Zhuowen; Sun, Jian-Tao; Tsujii, Junichi; Chang, Eric I-Chao | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 897-905 | 22505762 |
| Structure-based drug screening for G-protein-coupled receptors. | Shoichet, Brian K; Kobilka, Brian K | Trends in pharmacological sciences. | 2012 May; | 22503476 | |
| Using ontology-based annotation to profile disease research. | Liu, Yi; Coulet, Adrien; LePendu, Paea; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 2012 Jun | e177-86 | 22494789 |
| Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. | Wu, Stephen T; Liu, Hongfang; Li, Dingcheng; Tao, Cui; Musen, Mark A; Chute, Christopher G; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 2012 Jun | e149-56 | 22493050 |
| A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support. | Jiang, Xiaoqian; Boxwala, Aziz A; El-Kareh, Robert; Kim, Jihoon; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2012 Jun 1 | e137-e144 | 22493049 |
| Metab2MeSH: annotating compounds with medical subject headings. | Sartor, Maureen A; Ade, Alex; Wright, Zach; States, David; Omenn, Gilbert S; Athey, Brian; Karnovsky, Alla | Bioinformatics (Oxford, England) | 2012 May 15 | 1408-10 | 22492643 |
| Sex matters during adolescence: testosterone-related cortical thickness maturation differs between boys and girls. | Bramen, Jennifer E; Hranilovich, Jennifer A; Dahl, Ronald E; Chen, Jessie; Rosso, Carly; Forbes, Erika E; Dinov, Ivo D; Worthman, Carol M; Sowell, Elizabeth R | PloS one | 2012 | e33850 | 22479458 |
| A mega-analysis of genome-wide association studies for major depressive disorder. | Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium; Ripke, Stephan; Wray, Naomi R; Lewis, Cathryn M; Hamilton, Steven P; Weissman, Myrna M; Breen, Gerome; Byrne, Enda M; Blackwood, Douglas H R; Boomsma, Dorret I; Cichon, Sven; Heat | Molecular psychiatry | 2013 Apr | 497-511 | 22472876 |
| Frontostriatal connectivity in children during working memory and the effects of prenatal methamphetamine, alcohol, and polydrug exposure. | Roussotte, Florence F; Rudie, Jeffrey D; Smith, Lynne; O'Connor, Mary J; Bookheimer, Susan Y; Narr, Katherine L; Sowell, Elizabeth R | Developmental neuroscience | 2012 | 43-57 | 22472800 |
| A platform for dynamic simulation and control of movement based on OpenSim and MATLAB. | Mansouri, Misagh; Reinbolt, Jeffrey A | Journal of biomechanics | 2012 May 11 | 1517-21 | 22464351 |
| TLS/FUS (translocated in liposarcoma/fused in sarcoma) regulates target gene transcription via single-stranded DNA response elements. | Tan, Adelene Y; Riley, Todd R; Coady, Tristan; Bussemaker, Harmen J; Manley, James L | Proceedings of the National Academy of Sciences of the United States of America | 2012 Apr 17 | 6030-5 | 22460799 |
| Lexical patterns, features and knowledge resources for coreference resolution in clinical notes. | Gooch, Phil; Roudsari, Abdul | Journal of biomedical informatics | 2012 Oct | 901-12 | 22449720 |
| Inference of modules associated to eQTLs. | Kreimer, Anat; Litvin, Oren; Hao, Ke; Molony, Cliona; Pe'er, Dana; Pe'er, Itsik | Nucleic acids research | 2012 Jul | e98 | 22447449 |
| Genome-wide functional annotation of dual-specificity protein- and lipid-binding modules that regulate protein interactions. | Chen, Yong; Sheng, Ren; Kallberg, Morten; Silkov, Antonina; Tun, Moe P; Bhardwaj, Nitin; Kurilova, Svetlana; Hall, Randy A; Honig, Barry; Lu, Hui; Cho, Wonhwa | Molecular cell | 2012 Apr 27 | 226-37 | 22445486 |
| Prenatal isolated mild ventriculomegaly is associated with persistent ventricle enlargement at ages 1 and 2. | Lyall, Amanda E; Woolson, Sandra; Wolfe, Honor M; Goldman, Barbara Davis; Reznick, J Steven; Hamer, Robert M; Lin, Weili; Styner, Martin; Gerig, Guido; Gilmore, John H | Early human development | 2012 Aug | 691-8 | 22445211 |
| The right inhibition? Callosal correlates of hand performance in healthy children and adolescents callosal correlates of hand performance. | Kurth, Florian; Mayer, Emeran A; Toga, Arthur W; Thompson, Paul M; Luders, Eileen | Human brain mapping | 2013 Sep | 2259-65 | 22438280 |
| A review of magnetic resonance imaging and diffusion tensor imaging findings in mild traumatic brain injury. | Shenton, M E; Hamoda, H M; Schneiderman, J S; Bouix, S; Pasternak, O; Rathi, Y; Vu, M-A; Purohit, M P; Helmer, K; Koerte, I; Lin, A P; Westin, C-F; Kikinis, R; Kubicki, M; Stern, R A; Zafonte, R | Brain imaging and behavior. | 2012 Jun; | 137-92 | 22438191 |
| Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4. | Mysinger, Michael M; Weiss, Dahlia R; Ziarek, Joshua J; Gravel, Stephanie; Doak, Allison K; Karpiak, Joel; Heveker, Nikolaus; Shoichet, Brian K; Volkman, Brian F | Proceedings of the National Academy of Sciences of the United States of America | 2012 Apr 3 | 5517-22 | 22431600 |
| Sentiment Analysis of Suicide Notes: A Shared Task. | Pestian, John P; Matykiewicz, Pawel; Linn-Gust, Michelle; South, Brett; Uzuner, Ozlem; Wiebe, Jan; Cohen, K Bretonnel; Hurdle, John; Brew, Christopher | Biomedical informatics insights. | 2012 Jan 30; | 16-Mar | 22419877 |
| MCORES: a system for noun phrase coreference resolution for clinical records. | Bodnari, Andreea; Szolovits, Peter; Uzuner, Ozlem | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 906-12 | 22419739 |
| Right, left, and center: how does cerebral asymmetry mix with callosal connectivity? | Cherbuin, Nicolas; Luders, Eileen; Chou, Yi-Yu; Thompson, Paul M; Toga, Arthur W; Anstey, Kaarin J | Human brain mapping | 2013 Jul | 1728-36 | 22419524 |
| Anterior limb of the internal capsule in schizophrenia: a diffusion tensor tractography study. | Rosenberger, Gudrun; Nestor, Paul G; Oh, Jungsu S; Levitt, James J; Kindleman, Gordon; Bouix, Sylvain; Fitzsimmons, Jennifer; Niznikiewicz, Margaret; Westin, Carl-Fredrik; Kikinis, Ron; McCarley, Robert W; Shenton, Martha E; Kubicki, Marek | Brain imaging and behavior | 2012 Sep | 417-25 | 22415192 |
| Hippocampal shape analysis in Alzheimer's disease and frontotemporal lobar degeneration subtypes. | Lindberg, Olof; Walterfang, Mark; Looi, Jeffrey C L; Malykhin, Nikolai; Ostberg, Per; Zandbelt, Bram; Styner, Martin; Paniagua, Beatriz; Velakoulis, Dennis; Orndahl, Eva; Wahlund, Lars-Olof | Journal of Alzheimer's disease : JAD | 2012 | 355-65 | 22414571 |
| Where to Publish and Find Ontologies? A Survey of Ontology Libraries. | d'Aquin, Mathieu; Noy, Natalya F | Web semantics (Online) | 2012 Mar 1 | 96-111 | 22408576 |
| White matter integrity, language, and childhood onset schizophrenia. | Clark, Kristi; Narr, Katherine L; O'Neill, Joseph; Levitt, Jennifer; Siddarth, Prabha; Phillips, Owen; Toga, Arthur; Caplan, Rochelle | Schizophrenia research | 2012 Jul | 150-6 | 22405729 |
| Analytic regularization for landmark-based image registration. | Shusharina, Nadezhda; Sharp, Gregory | Physics in medicine and biology | 2012 Mar 21 | 1477-98 | 22390947 |
| How robust is human gait to muscle weakness? | van der Krogt, Marjolein M; Delp, Scott L; Schwartz, Michael H | Gait & posture | 2012 May | 113-9 | 22386624 |
| Bayesian lasso for semiparametric structural equation models. | Guo, Ruixin; Zhu, Hongtu; Chow, Sy-Miin; Ibrahim, Joseph G | Biometrics | 2012 Jun | 567-77 | 22376150 |
| Portability of an algorithm to identify rheumatoid arthritis in electronic health records. | Carroll, Robert J; Thompson, Will K; Eyler, Anne E; Mandelin, Arthur M; Cai, Tianxi; Zink, Raquel M; Pacheco, Jennifer A; Boomershine, Chad S; Lasko, Thomas A; Xu, Hua; Karlson, Elizabeth W; Perez, Raul G; Gainer, Vivian S; Murphy, Shawn N; Ruderman, Eric | Journal of the American Medical Informatics Association : JAMIA | 2012 Jun | e162-9 | 22374935 |
| Integration of the OpenIGTLink network protocol for image-guided therapy with the medical platform MeVisLab. | Egger, Jan; Tokuda, Junichi; Chauvin, Laurent; Freisleben, Bernd; Nimsky, Christopher; Kapur, Tina; Wells, William | The international journal of medical robotics + computer assisted surgery : MRCAS | 2012 Sep | 282-90 | 22374845 |
| Self-crossing detection and location for parametric active contours. | Nakhmani, Arie; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 2012 Jul | 3150-6 | 22374361 |
| Size and shape of the caudate nucleus in individuals with bipolar affective disorder. | Ong, Daniel; Walterfang, Mark; Malhi, Gin S; Styner, Martin; Velakoulis, Dennis; Pantelis, Christos | The Australian and New Zealand journal of psychiatry | 2012 Apr | 340-51 | 22368240 |
| Evaluating the state of the art in coreference resolution for electronic medical records. | Uzuner, Ozlem; Bodnari, Andreea; Shen, Shuying; Forbush, Tyler; Pestian, John; South, Brett R | Journal of the American Medical Informatics Association : JAMIA | 2012 Sep-Oct | 786-91 | 22366294 |
| Square-cut: a segmentation algorithm on the basis of a rectangle shape. | Egger, Jan; Kapur, Tina; Dukatz, Thomas; Kolodziej, Malgorzata; Zukic, Dzenan; Freisleben, Bernd; Nimsky, Christopher | PloS one | 2012 | e31064 | 22363547 |
| Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury. | Irimia, Andrei; Chambers, Micah C; Torgerson, Carinna M; Filippou, Maria; Hovda, David A; Alger, Jeffry R; Gerig, Guido; Toga, Arthur W; Vespa, Paul M; Kikinis, Ron; Van Horn, John D | Frontiers in neurology. | 2012; | 22363313 | |
| Differences in white matter fiber tract development present from 6 to 24 months in infants with autism. | Wolff, Jason J; Gu, Hongbin; Gerig, Guido; Elison, Jed T; Styner, Martin; Gouttard, Sylvain; Botteron, Kelly N; Dager, Stephen R; Dawson, Geraldine; Estes, Annette M; Evans, Alan C; Hazlett, Heather C; Kostopoulos, Penelope; McKinstry, Robert C; Paterson, | The American journal of psychiatry | 2012 Jun | 589-600 | 22362397 |
| Predictors of severe outcomes associated with Clostridium difficile infection in patients with inflammatory bowel disease. | Ananthakrishnan, A N; Guzman-Perez, R; Gainer, V; Cai, T; Churchill, S; Kohane, I; Plenge, R M; Murphy, S | Alimentary pharmacology & therapeutics | 2012 Apr | 789-95 | 22360370 |
| In search of the functional neuroanatomy of sociality: MRI subdivisions of orbital frontal cortex and social cognition. | Nestor, Paul G; Nakamura, Motoaki; Niznikiewicz, Margaret; Thompson, Elizabeth; Levitt, James J; Choate, Victoria; Shenton, Martha E; McCarley, Robert W | Social cognitive and affective neuroscience | 2013 Apr | 460-7 | 22345366 |
| Hippocampal atrophy and ventricular enlargement in normal aging, mild cognitive impairment (MCI), and Alzheimer Disease. | Apostolova, Liana G; Green, Amity E; Babakchanian, Sona; Hwang, Kristy S; Chou, Yi-Yu; Toga, Arthur W; Thompson, Paul M | Alzheimer disease and associated disorders | 2012 Jan | 17-27 | 22343374 |
| Viral reassortment as an information exchange between viral segments. | Greenbaum, Benjamin D; Li, Olive T W; Poon, Leo L M; Levine, Arnold J; Rabadan, Raul | Proceedings of the National Academy of Sciences of the United States of America | 2012 Feb 28 | 3341-6 | 22331898 |
| FAST EDGE-FILTERED IMAGE UPSAMPLING. | Joshi, Shantanu H; Marquina, Antonio L; Osher, Stanley J; Dinov, Ivo; Toga, Arthur W; Van Horn, John D | Proceedings. International Conference on Image Processing. | 2011 Sep 14; | 22323066 | |
| Quantitative modeling of the terminal differentiation of B cells and mechanisms of lymphomagenesis. | Martinez, Maria Rodriguez; Corradin, Alberto; Klein, Ulf; Alvarez, Mariano Javier; Toffolo, Gianna M; di Camillo, Barbara; Califano, Andrea; Stolovitzky, Gustavo A | Proceedings of the National Academy of Sciences of the United States of America | 2012 Feb 14 | 2672-7 | 22308355 |
| Circular representation of human cortical networks for subject and population-level connectomic visualization. | Irimia, Andrei; Chambers, Micah C; Torgerson, Carinna M; Horn, John D Van | NeuroImage | 2012 Apr 2 | 1340-51 | 22305988 |
| A system for coreference resolution for the clinical narrative. | Zheng, Jiaping; Chapman, Wendy W; Miller, Timothy A; Lin, Chen; Crowley, Rebecca S; Savova, Guergana K | Journal of the American Medical Informatics Association : JAMIA | 2012 Jul-Aug | 660-7 | 22298565 |
| Ratcheting up cancer potency estimates. | Crouch, Edmund A C; Omenn, Gilbert S | Environmental science & technology | 2012 Mar 6 | 2538-44 | 22296526 |
| On the covariate-adjusted estimation for an overall treatment difference with data from a randomized comparative clinical trial. | Tian, Lu; Cai, Tianxi; Zhao, Lihui; Wei, Lee-Jen | Biostatistics (Oxford, England) | 2012 Apr | 256-73 | 22294672 |
| Single sample expression-anchored mechanisms predict survival in head and neck cancer. | Yang, Xinan; Regan, Kelly; Huang, Yong; Zhang, Qingbei; Li, Jianrong; Seiwert, Tanguy Y; Cohen, Ezra E W; Xing, H Rosie; Lussier, Yves A | PLoS computational biology | 2012 Jan | e1002350 | 22291585 |
| TwinMARM: two-stage multiscale adaptive regression methods for twin neuroimaging data. | Li, Yimei; Gilmore, John H; Wang, Jiaping; Styner, Martin; Lin, Weili; Zhu, Hongtu | IEEE transactions on medical imaging | 2012 May | 1100-12 | 22287236 |
| Developing predictive molecular maps of human disease through community-based modeling. | Derry, Jonathan M J; Mangravite, Lara M; Suver, Christine; Furia, Matthew D; Henderson, David; Schildwachter, Xavier; Bot, Brian; Izant, Jonathan; Sieberts, Solveig K; Kellen, Michael R; Friend, Stephen H | Nature genetics | 2012 Feb | 127-30 | 22281773 |
| Diffusion tensor imaging-based characterization of brain neurodevelopment in primates. | Shi, Yundi; Short, Sarah J; Knickmeyer, Rebecca C; Wang, Jiaping; Coe, Christopher L; Niethammer, Marc; Gilmore, John H; Zhu, Hongtu; Styner, Martin A | Cerebral cortex (New York, N.Y. : 1991) | 2013 Jan | 36-48 | 22275483 |
| Classification of astrocytomas and oligodendrogliomas from mass spectrometry data using sparse kernel machines. | Huang, Jacob; Gholami, Behnood; Agar, Nathalie Y R; Norton, Isaiah; Haddad, Wassim M; Tannenbaum, Allen R | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2011 | 7965-8 | 22256188 |
| 3D Slicer as a tool for interactive brain tumor segmentation. | Kikinis, Ron; Pieper, Steve | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2011 | 6982-4 | 22255945 |
| A compressive sensing approach for glioma margin delineation using mass spectrometry. | Gholami, Behnood; Agar, Nathalie Y R; Jolesz, Ferenc A; Haddad, Wassim M; Tannenbaum, Allen R | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2011 | 5682-5 | 22255629 |
| Ranking of stopping criteria for log domain diffeomorphic demons application in clinical radiation therapy. | Peroni, M; Golland, P; Sharp, G C; Baroni, G | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2011 | 4884-7 | 22255433 |
| Ballistocardiography--a method worth revisiting. | Giovangrandi, Laurent; Inan, Omer T; Wiard, Richard M; Etemadi, Mozziyar; Kovacs, Gregory T A | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2011 | 4279-82 | 22255285 |
| Genetic interactions between chromosomes 11 and 18 contribute to airway hyperresponsiveness in mice. | Ferreira, Caroline M; Chen, James L; Li, Jianrong; Shimomura, Kazuhiro; Yang, Xinan; Lussier, Yves A; Pinto, Lawrence H; Solway, Julian | PloS one | 2012 | e29579 | 22253740 |
| Atlas-guided segmentation of vervet monkey brain MRI. | Fedorov, Andriy; Li, Xiaoxing; Pohl, Kilian M; Bouix, Sylvain; Styner, Martin; Addicott, Merideth; Wyatt, Chris; Daunais, James B; Wells, William M; Kikinis, Ron | The open neuroimaging journal. | 2011; | 22253661 | |
| FreeSurfer. | Fischl, Bruce | NeuroImage. | 2012 Aug 15; | 774-81 | 22248573 |
| Reverse-engineering human regulatory networks. | Lefebvre, Celine; Rieckhof, Gabrielle; Califano, Andrea | Wiley interdisciplinary reviews. Systems biology and medicine | 2012 Jul-Aug | 311-25 | 22246697 |
| Disease and genetic contributions toward local tissue volume disturbances in schizophrenia: a tensor-based morphometry study. | Yang, Yaling; Nuechterlein, Keith H; Phillips, Owen R; Gutman, Boris; Kurth, Florian; Dinov, Ivo; Thompson, Paul M; Asarnow, Robert F; Toga, Arthur W; Narr, Katherine L | Human brain mapping | 2012 Sep | 2081-91 | 22241649 |
| Clinical application of pharmacokinetic analysis as a biomarker of solitary pulmonary nodules: dynamic contrast-enhanced MR imaging. | Mamata, Hatsuho; Tokuda, Junichi; Gill, Ritu R; Padera, Robert F; Lenkinski, Robert E; Sugarbaker, David J; Butler, James P; Hatabu, Hiroto | Magnetic resonance in medicine. | 2012 Nov; | 22231729 | |
| How to measure cortical folding from MR images: a step-by-step tutorial to compute local gyrification index. | Schaer, Marie; Cuadra, Meritxell Bach; Schmansky, Nick; Fischl, Bruce; Thiran, Jean-Philippe; Eliez, Stephan | Journal of visualized experiments : JoVE | 2012 | e3417 | 22230945 |
| On the biomechanics and mechanobiology of growing skin. | Zollner, Alexander M; Buganza Tepole, Adrian; Kuhl, Ellen | Journal of theoretical biology | 2012 Mar 21 | 166-75 | 22227432 |
| Stabilisation of walking by intrinsic muscle properties revealed in a three-dimensional muscle-driven simulation. | John, Chand T; Anderson, Frank C; Higginson, Jill S; Delp, Scott L | Computer methods in biomechanics and biomedical engineering | 2013 Apr | 451-62 | 22224406 |
| Technical desiderata for the integration of genomic data into Electronic Health Records. | Masys, Daniel R; Jarvik, Gail P; Abernethy, Neil F; Anderson, Nicholas R; Papanicolaou, George J; Paltoo, Dina N; Hoffman, Mark A; Kohane, Isaac S; Levy, Howard P | Journal of biomedical informatics | 2012 Jun | 419-22 | 22223081 |
| Using multiple microenvironments to find similar ligand-binding sites: application to kinase inhibitor binding. | Liu, Tianyun; Altman, Russ B | PLoS computational biology | 2011 Dec | e1002326 | 22219723 |
| Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. | Kohane, Isaac S; Valtchinov, Vladimir I | Bioinformatics (Oxford, England). | 2012 Feb 15; | 22219206 | |
| Spatio-temporal Structure of US Critical Care Transfer Network. | Unnikrishnan, K P; Patnaik, Debprakash; Iwashyna, Theodore J | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2011; | 22211183 | |
| CNTRO 2.0: A Harmonized Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. | Tao, Cui; Solbrig, Harold R; Chute, Christopher G | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2011; | 22211182 | |
| Towards Semantic-Web Based Representation and Harmonization of Standard Meta-data Models for Clinical Studies. | Tao, Cui; Jiang, Guoqian; Wei, Weiqi; Solbrig, Harold R; Chute, Christopher G | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2011; | 22211181 | |
| Smooth isotonic regression: a new method to calibrate predictive models. | Jiang, Xiaoqian; Osl, Melanie; Kim, Jihoon; Ohno-Machado, Lucila | AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science | 2011 | 16-20 | 22211175 |
| An approach to improve LOINC mapping through augmentation of local test names. | Kim, Hyeoneui; El-Kareh, Robert; Goel, Anupam; Vineet, F N U; Chapman, Wendy W | Journal of biomedical informatics | 2012 Aug | 651-7 | 22210167 |
| Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes. | Bray, Jenelle K; Weiss, Dahlia R; Levitt, Michael | Biophysical journal | 2011 Dec 21 | 2966-9 | 22208195 |
| Compressive tibiofemoral force during crouch gait. | Steele, Katherine M; Demers, Matthew S; Schwartz, Michael H; Delp, Scott L | Gait & posture | 2012 Apr | 556-60 | 22206783 |
| Anatomic brain asymmetry in vervet monkeys. | Fears, Scott C; Scheibel, Kevin; Abaryan, Zvart; Lee, Chris; Service, Susan K; Jorgensen, Matthew J; Fairbanks, Lynn A; Cantor, Rita M; Freimer, Nelson B; Woods, Roger P | PloS one | 2011 | e28243 | 22205941 |
| Qualitative analysis of workflow modifications used to generate the reference standard for the 2010 i2b2/VA challenge. | South, Brett R; Shen, Shuying; Barrus, Robyn; DuVall, Scott L; Uzuner, Ozlem; Weir, Charlene | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2011 | 1243-51 | 22195185 |
| The effect of reference panels and software tools on genotype imputation. | Nho, Kwangsik; Shen, Li; Kim, Sungeun; Swaminathan, Shanker; Risacher, Shannon L; Saykin, Andrew J; Alzheimerýýýs Disease Neuroimaging Initiative (ADNI) | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2011 | 1013-8 | 22195161 |
| Anomaly and signature filtering improve classifier performance for detection of suspicious access to EHRs. | Kim, Jihoon; Grillo, Janice M; Boxwala, Aziz A; Jiang, Xiaoqian; Mandelbaum, Rose B; Patel, Bhakti A; Mikels, Debra; Vinterbo, Staal A; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2011 | 723-31 | 22195129 |
| Improving predictions in imbalanced data using Pairwise Expanded Logistic Regression. | Jiang, Xiaoqian; El-Kareh, Robert; Ohno-Machado, Lucila | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2011 | 625-34 | 22195118 |
| Part-of-speech tagging for clinical text: wall or bridge between institutions? | Fan, Jung-wei; Prasad, Rashmi; Yabut, Rommel M; Loomis, Richard M; Zisook, Daniel S; Mattison, John E; Huang, Yang | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2011 | 382-91 | 22195091 |
| A cloud-based approach to medical NLP. | Chard, Kyle; Russell, Michael; Lussier, Yves A; Mendonca, Eneida A; Silverstein, Jonathan C | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium | 2011 | 207-16 | 22195072 |
| Registration of images with varying topology using embedded maps. | Li, Xiaoxing; Long, Xiaojing; Laurienti, Paul; Wyatt, Christopher; Alzheimerýýýs Disease Neuroimaging Initiative | IEEE transactions on medical imaging | 2012 Mar | 749-65 | 22194239 |
| Trends in biomedical informatics: most cited topics from recent years. | Kim, Hyeon-Eui; Jiang, Xiaoqian; Kim, Jihoon; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2011 Dec | i166-70 | 22180873 |
| Neurological imaging: statistics behind the pictures. | Dinov, Ivo D | Imaging in medicine | 2011 Aug 1 | 423-432 | 22180753 |
| U-Compare bio-event meta-service: compatible BioNLP event extraction services. | Kano, Yoshinobu; Bjorne, Jari; Ginter, Filip; Salakoski, Tapio; Buyko, Ekaterina; Hahn, Udo; Cohen, K Bretonnel; Verspoor, Karin; Roeder, Christophe; Hunter, Lawrence E; Kilicoglu, Halil; Bergler, Sabine; Van Landeghem, Sofie; Van Parys, Thomas; Van de Pe | BMC bioinformatics | 2011 | 481 | 22177292 |
| MicroRNA expression characterizes oligometastasis(es). | Lussier, Yves A; Xing, H Rosie; Salama, Joseph K; Khodarev, Nikolai N; Huang, Yong; Zhang, Qingbei; Khan, Sajid A; Yang, Xinan; Hasselle, Michael D; Darga, Thomas E; Malik, Renuka; Fan, Hanli; Perakis, Samantha; Filippo, Matthew; Corbin, Kimberly; Lee, Yo | PloS one | 2011 | e28650 | 22174856 |
| Identifying hosts of families of viruses: a machine learning approach. | Raj, Anil; Dewar, Michael; Palacios, Gustavo; Rabadan, Raul; Wiggins, Christopher H | PloS one | 2011 | e27631 | 22174744 |
| Grand challenge competition to predict in vivo knee loads. | Fregly, Benjamin J; Besier, Thor F; Lloyd, David G; Delp, Scott L; Banks, Scott A; Pandy, Marcus G; D'Lima, Darryl D | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2012 Apr | 503-13 | 22161745 |
| Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins. | Slattery, Matthew; Riley, Todd; Liu, Peng; Abe, Namiko; Gomez-Alcala, Pilar; Dror, Iris; Zhou, Tianyin; Rohs, Remo; Honig, Barry; Bussemaker, Harmen J; Mann, Richard S | Cell | 2011 Dec 9 | 1270-82 | 22153072 |
| Genetic susceptibility to coronary heart disease in type 2 diabetes: 3 independent studies. | Qi, Lu; Parast, Layla; Cai, Tianxi; Powers, Christine; Gervino, Ernest V; Hauser, Thomas H; Hu, Frank B; Doria, Alessandro | Journal of the American College of Cardiology. | 2011 Dec 13; | 2675-82 | 22152955 |
| Empirical comparison of cross-platform normalization methods for gene expression data. | Rudy, Jason; Valafar, Faramarz | BMC bioinformatics | 2011 | 467 | 22151536 |
| Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex. | Siggers, Trevor; Duyzend, Michael H; Reddy, Jessica; Khan, Sidra; Bulyk, Martha L | Molecular systems biology | 2011 | 555 | 22146299 |
| Characterization of KRAS Rearrangements in Metastatic Prostate Cancer. | Wang, Xiao-Song; Shankar, Sunita; Dhanasekaran, Saravana M; Ateeq, Bushra; Sasaki, Atsuo T; Jing, Xiaojun; Robinson, Daniel; Cao, Qi; Prensner, John R; Yocum, Anastasia K; Wang, Rui; Fries, Daniel F; Han, Bo; Asangani, Irfan A; Cao, Xuhong; Li, Yong; Omen | Cancer discovery | 2011 Jun 1 | 35-43 | 22140652 |
| Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data. | Karnovsky, Alla; Weymouth, Terry; Hull, Tim; Tarcea, V Glenn; Scardoni, Giovanni; Laudanna, Carlo; Sartor, Maureen A; Stringer, Kathleen A; Jagadish, H V; Burant, Charles; Athey, Brian; Omenn, Gilbert S | Bioinformatics (Oxford, England) | 2012 Feb 1 | 373-80 | 22135418 |
| Phenotyping patient-derived cells for translational studies in cardiovascular disease. | Shaw, Stanley Y; Brettman, Ari D | Circulation | 2011 Nov 29 | 2444-55 | 22125190 |
| Multiscale 3D shape representation and segmentation with applications to hippocampal/caudate extraction from brain MRI. | Gao, Yi; Corn, Benjamin; Schifter, Dan; Tannenbaum, Allen | Medical image analysis | 2012 Feb | 374-85 | 22119491 |
| The NIH National Center for Integrative Biomedical Informatics (NCIBI). | Athey, Brian D; Cavalcoli, James D; Jagadish, H V; Omenn, Gilbert S; Mirel, Barbara; Kretzler, Matthias; Burant, Charles; Isokpehi, Raphael D; DeLisi, Charles; NCIBI faculty, trainees, and staff | Journal of the American Medical Informatics Association : JAMIA | 2012 Mar-Apr | 166-70 | 22101971 |
| Principles of dimer-specific gene regulation revealed by a comprehensive characterization of NF-ýýB family DNA binding. | Siggers, Trevor; Chang, Abraham B; Teixeira, Ana; Wong, Daniel; Williams, Kevin J; Ahmed, Bilal; Ragoussis, Jiannis; Udalova, Irina A; Smale, Stephen T; Bulyk, Martha L | Nature immunology | 2012 Jan | 95-102 | 22101729 |
| Along-tract statistics allow for enhanced tractography analysis. | Colby, John B; Soderberg, Lindsay; Lebel, Catherine; Dinov, Ivo D; Thompson, Paul M; Sowell, Elizabeth R | NeuroImage | 2012 Feb 15 | 3227-42 | 22094644 |
| 3D quantification of mandibular asymmetry using the SPHARM-PDM tool box. | Alhadidi, Abeer; Cevidanes, Lucia H; Paniagua, Beatriz; Cook, Richard; Festy, Frederic; Tyndall, Donald | International journal of computer assisted radiology and surgery. | 2012 Mar; | 265-71 | 22089896 |
| Influence of dietary sodium modulation on electrocardiographic voltage criteria for left ventricular hypertrophy in normotensive individuals. | Larson, Carol; Vaidya, Anand; Sun, Bei; Williams, Jonathan S | Journal of investigative medicine : the official publication of the American Federation for Clinical Research | 2012 Jan | 39-43 | 22089249 |
| Functional Annotation Analytics of Rhodopseudomonas palustris Genomes. | Simmons, Shaneka S; Isokpehi, Raphael D; Brown, Shyretha D; McAllister, Donee L; Hall, Charnia C; McDuffy, Wanaki M; Medley, Tamara L; Udensi, Udensi K; Rajnarayanan, Rajendram V; Ayensu, Wellington K; Cohly, Hari H P | Bioinformatics and biology insights. | 2011; | 22084572 | |
| Growing skin: A computational model for skin expansion in reconstructive surgery. | Tepole, Adrian Buganza; Ploch, Christopher Joseph; Wong, Jonathan; Gosain, Arun K; Kuhl, Ellen | Journal of the mechanics and physics of solids | 2011 Oct 1 | 2177-2190 | 22081726 |
| A translational engine at the national scale: informatics for integrating biology and the bedside. | Kohane, Isaac S; Churchill, Susanne E; Murphy, Shawn N | Journal of the American Medical Informatics Association : JAMIA | 2012 Mar-Apr | 181-5 | 22081225 |
| iDASH: integrating data for analysis, anonymization, and sharing. | Ohno-Machado, Lucila; Bafna, Vineet; Boxwala, Aziz A; Chapman, Brian E; Chapman, Wendy W; Chaudhuri, Kamalika; Day, Michele E; Farcas, Claudiu; Heintzman, Nathaniel D; Jiang, Xiaoqian; Kim, Hyeoneui; Kim, Jihoon; Matheny, Michael E; Resnic, Frederic S; Vi | Journal of the American Medical Informatics Association : JAMIA | 2012 Mar-Apr | 196-201 | 22081224 |
| Using systems and structure biology tools to dissect cellular phenotypes. | Floratos, Aris; Honig, Barry; Pe'er, Dana; Califano, Andrea | Journal of the American Medical Informatics Association : JAMIA | 2012 Mar-Apr | 171-5 | 22081223 |
| Simbios: an NIH national center for physics-based simulation of biological structures. | Delp, Scott L; Ku, Joy P; Pande, Vijay S; Sherman, Michael A; Altman, Russ B | Journal of the American Medical Informatics Association : JAMIA | 2012 Mar-Apr | 186-9 | 22081222 |
| The Center for Computational Biology: resources, achievements, and challenges. | Toga, Arthur W; Dinov, Ivo D; Thompson, Paul M; Woods, Roger P; Van Horn, John D; Shattuck, David W; Parker, D Stott | Journal of the American Medical Informatics Association : JAMIA | 2012 Mar-Apr | 202-6 | 22081221 |
| The National Center for Biomedical Ontology. | Musen, Mark A; Noy, Natalya F; Shah, Nigam H; Whetzel, Patricia L; Chute, Christopher G; Story, Margaret-Anne; Smith, Barry; NCBO team | Journal of the American Medical Informatics Association : JAMIA | 2012 Mar-Apr | 190-5 | 22081220 |
| The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis. | Kapur, Tina; Pieper, Steve; Whitaker, Ross; Aylward, Stephen; Jakab, Marianna; Schroeder, Will; Kikinis, Ron | Journal of the American Medical Informatics Association : JAMIA | 2012 Mar-Apr | 176-80 | 22081219 |
| Replication and meta-analysis of the gene-environment interaction between body mass index and the interleukin-6 promoter polymorphism with higher insulin resistance. | Underwood, Patricia C; Chamarthi, Bindu; Williams, Jonathan S; Sun, Bei; Vaidya, Anand; Raby, Benjamin A; Lasky-Su, Jessica; Hopkins, Paul N; Adler, Gail K; Williams, Gordon H | Metabolism: clinical and experimental | 2012 May | 667-71 | 22075267 |
| Growing skin: tissue expansion in pediatric forehead reconstruction. | Zollner, Alexander M; Buganza Tepole, Adrian; Gosain, Arun K; Kuhl, Ellen | Biomechanics and modeling in mechanobiology | 2012 Jul | 855-67 | 22052000 |
| Brain growth rate abnormalities visualized in adolescents with autism. | Hua, Xue; Thompson, Paul M; Leow, Alex D; Madsen, Sarah K; Caplan, Rochelle; Alger, Jeffry R; O'Neill, Joseph; Joshi, Kishori; Smalley, Susan L; Toga, Arthur W; Levitt, Jennifer G | Human brain mapping | 2013 Feb | 425-36 | 22021093 |
| A systems view of genetics in chronic kidney disease. | Keller, Benjamin J; Martini, Sebastian; Sedor, John R; Kretzler, Matthias | Kidney international | 2012 Jan | 14-21 | 22012128 |
| Functional implications of structural predictions for alternative splice proteins expressed in Her2/neu-induced breast cancers. | Menon, Rajasree; Roy, Ambrish; Mukherjee, Srayanta; Belkin, Saveliy; Zhang, Yang; Omenn, Gilbert S | Journal of proteome research | 2011 Dec 2 | 5503-11 | 22003824 |
| Segmentation of nerve bundles and ganglia in spine MRI using particle filters. | Dalca, Adrian; Danagoulian, Giovanna; Kikinis, Ron; Schmidt, Ehud; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2011 | 537-45 | 22003741 |
| An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. | Sumazin, Pavel; Yang, Xuerui; Chiu, Hua-Sheng; Chung, Wei-Jen; Iyer, Archana; Llobet-Navas, David; Rajbhandari, Presha; Bansal, Mukesh; Guarnieri, Paolo; Silva, Jose; Califano, Andrea | Cell | 2011 Oct 14 | 370-81 | 22000015 |
| Geometric metamorphosis. | Niethammer, Marc; Hart, Gabriel L; Pace, Danielle F; Vespa, Paul M; Irimia, Andrei; Van Horn, John D; Aylward, Stephen R | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2011 | 639-46 | 21995083 |
| Fast shape-based nearest-neighbor search for brain MRIs using hierarchical feature matching. | Zhu, Peihong; Awate, Suyash P; Gerber, Samuel; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2011 | 484-91 | 21995064 |
| Iterative refinement of point correspondences for 3D statistical shape models. | Seshamani, Sharmishtaa; Chintalapani, Gouthami; Taylor, Russell | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2011 | 417-25 | 21995056 |
| Estimation of smooth growth trajectories with controlled acceleration from time series shape data. | Fishbaugh, James; Durrleman, Stanley; Gerig, Guido | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2011 | 401-8 | 21995054 |
| Geometric correspondence for ensembles of nonregular shapes. | Datar, Manasi; Gur, Yaniv; Paniagua, Beatriz; Styner, Martin; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2011 | 368-75 | 21995050 |
| A cascade of classifiers for extracting medication information from discharge summaries. | Halgrim, Scott Russell; Xia, Fei; Solti, Imre; Cadag, Eithon; Uzuner, Ozlem | Journal of biomedical semantics. | 2011; | 21992591 | |
| A hidden Markov model for copy number variant prediction from whole genome resequencing data. | Shen, Yufeng; Gu, Yiwei; Pe'er, Itsik | BMC bioinformatics | 2011 | S4 | 21989326 |
| Strategies for maintaining patient privacy in i2b2. | Murphy, Shawn N; Gainer, Vivian; Mendis, Michael; Churchill, Susanne; Kohane, Isaac | Journal of the American Medical Informatics Association : JAMIA | 2011 Dec | i103-8 | 21984588 |
| Calibrating predictive model estimates to support personalized medicine. | Jiang, Xiaoqian; Osl, Melanie; Kim, Jihoon; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA. | 2012 Mar-Apr; | 21984587 | |
| The architecture of long-range haplotypes shared within and across populations. | Gusev, Alexander; Palamara, Pier Francesco; Aponte, Gregory; Zhuang, Zhong; Darvasi, Ariel; Gregersen, Peter; Pe'er, Itsik | Molecular biology and evolution | 2012 Feb | 473-86 | 21984068 |
| A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA. | Bishop, Eric P; Rohs, Remo; Parker, Stephen C J; West, Sean M; Liu, Peng; Mann, Richard S; Honig, Barry; Tullius, Thomas D | ACS chemical biology | 2011 Dec 16 | 1314-20 | 21967305 |
| Empowering industrial research with shared biomedical vocabularies. | Harland, Lee; Larminie, Christopher; Sansone, Susanna-Assunta; Popa, Sorana; Marshall, M Scott; Braxenthaler, Michael; Cantor, Michael; Filsell, Wendy; Forster, Mark J; Huang, Enoch; Matern, Andreas; Musen, Mark; Saric, Jasmin; Slater, Ted; Wilson, Jabe; Lynch, Nick; Wise, John; Dix, Ian | Drug discovery today. | 2011 Nov; | 21963522 | |
| Source cancellation profiles of electroencephalography and magnetoencephalography. | Irimia, Andrei; Van Horn, John Darrell; Halgren, Eric | NeuroImage | 2012 Feb 1 | 2464-74 | 21959078 |
| Cortical and hippocampal atrophy in patients with autosomal dominant familial Alzheimer's disease. | Apostolova, Liana G; Hwang, Kristy S; Medina, Luis D; Green, Amity E; Braskie, Meredith N; Dutton, Rebecca A; Lai, Jeffrey; Geschwind, Daniel H; Cummings, Jeffrey L; Thompson, Paul M; Ringman, John M | Dementia and geriatric cognitive disorders | 2011 | 118-25 | 21952501 |
| Multiscale computational models for optogenetic control of cardiac function. | Abilez, Oscar J; Wong, Jonathan; Prakash, Rohit; Deisseroth, Karl; Zarins, Christopher K; Kuhl, Ellen | Biophysical journal | 2011 Sep 21 | 1326-34 | 21943413 |
| Efficient Probabilistic and Geometric Anatomical Mapping Using Particle Mesh Approximation on GPUs. | Ha, Linh; Prastawa, Marcel; Gerig, Guido; Gilmore, John H; Silva, Claudio T; Joshi, Sarang | International journal of biomedical imaging | 2011 | 572187 | 21941523 |
| Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM. | Styner, Martin; Oguz, Ipek; Xu, Shun; Brechbuhler, Christian; Pantazis, Dimitrios; Levitt, James J; Shenton, Martha E; Gerig, Guido | The insight journal | 2006 | 242-250 | 21941375 |
| The representation of protein complexes in the Protein Ontology (PRO). | Bult, Carol J; Drabkin, Harold J; Evsikov, Alexei; Natale, Darren; Arighi, Cecilia; Roberts, Natalia; Ruttenberg, Alan; D'Eustachio, Peter; Smith, Barry; Blake, Judith A; Wu, Cathy | BMC bioinformatics. | 2011 Sep 19; | 21929785 | |
| The identification of gene expression profiles associated with progression of human diabetic neuropathy. | Hur, Junguk; Sullivan, Kelli A; Pande, Manjusha; Hong, Yu; Sima, Anders A F; Jagadish, Hosagrahar V; Kretzler, Matthias; Feldman, Eva L | Brain : a journal of neurology | 2011 Nov | 3222-35 | 21926103 |
| Brain surface conformal parameterization with the Ricci flow. | Wang, Yalin; Shi, Jie; Yin, Xiaotian; Gu, Xianfeng; Chan, Tony F; Yau, Shing-Tung; Toga, Arthur W; Thompson, Paul M | IEEE transactions on medical imaging | 2012 Feb | 251-64 | 21926017 |
| NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources. | Jonquet, Clement; Lependu, Paea; Falconer, Sean; Coulet, Adrien; Noy, Natalya F; Musen, Mark A; Shah, Nigam H | Web semantics (Online) | 2011 Sep 1 | 316-324 | 21918645 |
| Morphometric analysis of subcortical structures in progressive supranuclear palsy: In vivo evidence of neostriatal and mesencephalic atrophy. | Looi, Jeffrey C L; Macfarlane, Matthew D; Walterfang, Mark; Styner, Martin; Velakoulis, Dennis; Latt, Jimmy; van Westen, Danielle; Nilsson, Christer | Psychiatry research | 2011 Nov 30 | 163-75 | 21899988 |
| ARGOS policy brief on semantic interoperability. | Kalra, Dipak; Musen, Mark; Smith, Barry; Ceusters, Werner; De Moor, Georges | Studies in health technology and informatics. | 2011; | 21893897 | |
| Differentially Private Empirical Risk Minimization. | Chaudhuri, Kamalika; Monteleoni, Claire; Sarwate, Anand D | Journal of machine learning research : JMLR | 2011 Mar | 1069-1109 | 21892342 |
| Asymmetric bias in user guided segmentations of brain structures. | Maltbie, Eric; Bhatt, Kshamta; Paniagua, Beatriz; Smith, Rachel G; Graves, Michael M; Mosconi, Matthew W; Peterson, Sarah; White, Scott; Blocher, Joseph; El-Sayed, Mohammed; Hazlett, Heather C; Styner, Martin A | NeuroImage | 2012 Jan 16 | 1315-23 | 21889995 |
| Search for patterns of functional specificity in the brain: a nonparametric hierarchical Bayesian model for group fMRI data. | Lashkari, Danial; Sridharan, Ramesh; Vul, Edward; Hsieh, Po-Jang; Kanwisher, Nancy; Golland, Polina | NeuroImage | 2012 Jan 16 | 1348-68 | 21884803 |
| Robust brain extraction across datasets and comparison with publicly available methods. | Iglesias, Juan Eugenio; Liu, Cheng-Yi; Thompson, Paul M; Tu, Zhuowen | IEEE transactions on medical imaging | 2011 Sep | 1617-34 | 21880566 |
| Joint modeling of anatomical and functional connectivity for population studies. | Venkataraman, Archana; Rathi, Yogesh; Kubicki, Marek; Westin, Carl-Fredrik; Golland, Polina | IEEE transactions on medical imaging | 2012 Feb | 164-82 | 21878411 |
| CYP4A11 T8590C polymorphism, salt-sensitive hypertension, and renal blood flow. | Williams, Jonathan S; Hopkins, Paul N; Jeunemaitre, Xavier; Brown, Nancy J | Journal of hypertension | 2011 Oct | 1913-8 | 21873888 |
| Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network. | Hur, Junguk; Xiang, Zuoshuang; Feldman, Eva L; He, Yongqun | BMC immunology | 2011 | 49 | 21871085 |
| Modeling diffusion-weighted MRI as a spatially variant gaussian mixture: application to image denoising. | Gonzalez, Juan Eugenio Iglesias; Thompson, Paul M; Zhao, Aishan; Tu, Zhuowen | Medical physics | 2011 Jul | 4350-64 | 21859036 |
| Anatomy of high-performance 2D similarity calculations. | Haque, Imran S; Pande, Vijay S; Walters, W Patrick | Journal of chemical information and modeling | 2011 Sep 26 | 2345-51 | 21854053 |
| Error bounds on the SCISSORS approximation method. | Haque, Imran S; Pande, Vijay S | Journal of chemical information and modeling | 2011 Sep 26 | 2248-53 | 21851122 |
| Natural language processing: an introduction. | Nadkarni, Prakash M; Ohno-Machado, Lucila; Chapman, Wendy W | Journal of the American Medical Informatics Association : JAMIA | 2011 Sep-Oct | 544-51 | 21846786 |
| Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. | Chapman, Wendy W; Nadkarni, Prakash M; Hirschman, Lynette; D'Avolio, Leonard W; Savova, Guergana K; Uzuner, Ozlem | Journal of the American Medical Informatics Association : JAMIA | 2011 Sep-Oct | 540-3 | 21846785 |
| Nonparametric Hierarchical Bayesian Model for Functional Brain Parcellation. | Lashkari, Danial; Sridharan, Ramesh; Vul, Edward; Hsieh, Po-Jang; Kanwisher, Nancy; Golland, Polina | Conference on Computer Vision and Pattern Recognition Workshops IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops | 2010 Jun 13 | 15-22 | 21841977 |
| Differential effects of the Huntington's disease CAG mutation in striatum and cerebellum are quantitative not qualitative. | Fossale, Elisa; Seong, Ihn Sik; Coser, Kathryn R; Shioda, Toshi; Kohane, Isaac S; Wheeler, Vanessa C; Gusella, James F; MacDonald, Marcy E; Lee, Jong-Min | Human molecular genetics | 2011 Nov 1 | 4258-67 | 21840924 |
| Central Limit Theorem: New SOCR Applet and Demonstration Activity. | Dinov, Ivo D; Christou, Nicolas; Sanchez, Juana | Journal of statistics education : an international journal on the teaching and learning of statistics | 2008 Jul 1 | 1-15 | 21833159 |
| Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI. | Glasser, Matthew F; Van Essen, David C | The Journal of neuroscience : the official journal of the Society for Neuroscience | 2011 Aug 10 | 11597-616 | 21832190 |
| Comparison of two methods for quantitative assessment of mandibular asymmetry using cone beam computed tomography image volumes. | AlHadidi, Abeer; Cevidanes, L H S; Mol, A; Ludlow, J; Styner, M | Dento maxillo facial radiology. | 2011 Sep; | 21831974 | |
| Fiber geometry in the corpus callosum in schizophrenia: evidence for transcallosal misconnection. | Whitford, Thomas J; Savadjiev, Peter; Kubicki, Marek; O'Donnell, Lauren J; Terry, Douglas P; Bouix, Sylvain; Westin, Carl-Fredrik; Schneiderman, Jason S; Bobrow, Laurel; Rausch, Andrew C; Niznikiewicz, Margaret; Nestor, Paul G; Pantelis, Christos; Wood, S | Schizophrenia research | 2011 Oct | 69-74 | 21831601 |
| Superimposition of 3D cone-beam CT models in orthognathic surgery. | da Motta, Alexandre Trindade Simoes; de Assis Ribeiro Carvalho, Felipe; Oliveira, Ana Emilia Figueiredo; Cevidanes, Lucia Helena Soares; de Oliveira Almeida, Marco Antonio | Dental press journal of orthodontics. | 2010 Mar 1; | 39-41 | 21814624 |
| Patients with patellofemoral pain exhibit elevated bone metabolic activity at the patellofemoral joint. | Draper, Christine E; Fredericson, Michael; Gold, Garry E; Besier, Thor F; Delp, Scott L; Beaupre, Gary S; Quon, Andrew | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2012 Feb | 209-13 | 21812024 |
| LexRDF Model: An RDF-based Unified Model for Heterogeneous Biomedical Ontologies. | Tao, Cui; Pathak, Jyotishman; Solbrig, Harold R; Wei, Wei-Qi; Chute, Christopher G | CEUR workshop proceedings | 2009 Oct 26 | 3 | 21804785 |
| Analysis of the coding genome of diffuse large B-cell lymphoma. | Pasqualucci, Laura; Trifonov, Vladimir; Fabbri, Giulia; Ma, Jing; Rossi, Davide; Chiarenza, Annalisa; Wells, Victoria A; Grunn, Adina; Messina, Monica; Elliot, Oliver; Chan, Joseph; Bhagat, Govind; Chadburn, Amy; Gaidano, Gianluca; Mullighan, Charles G; R | Nature genetics | 2011 Sep | 830-7 | 21804550 |
| Applications of the pipeline environment for visual informatics and genomics computations. | Dinov, Ivo D; Torri, Federica; Macciardi, Fabio; Petrosyan, Petros; Liu, Zhizhong; Zamanyan, Alen; Eggert, Paul; Pierce, Jonathan; Genco, Alex; Knowles, James A; Clark, Andrew P; Van Horn, John D; Ames, Joseph; Kesselman, Carl; Toga, Arthur W | BMC bioinformatics | 2011 | 304 | 21791102 |
| Comparison of acute and chronic traumatic brain injury using semi-automatic multimodal segmentation of MR volumes. | Irimia, Andrei; Chambers, Micah C; Alger, Jeffry R; Filippou, Maria; Prastawa, Marcel W; Wang, Bo; Hovda, David A; Gerig, Guido; Toga, Arthur W; Kikinis, Ron; Vespa, Paul M; Van Horn, John D | Journal of neurotrauma | 2011 Nov | 2287-306 | 21787171 |
| Deformable Image Registration of Sliding Organs Using Anisotropic Diffusive Regularization. | Pace, Danielle F; Enquobahrie, Andinet; Yang, Hua; Aylward, Stephen R; Niethammer, Marc | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2011 Mar 30 | 407-413 | 21785755 |
| Fast flexible modeling of RNA structure using internal coordinates. | Flores, Samuel Coulbourn; Sherman, Michael A; Bruns, Christopher M; Eastman, Peter; Altman, Russ Biagio | IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM | 2011 Sep-Oct | 1247-57 | 21778523 |
| Quantitative comparison of villin headpiece subdomain simulations and triplet-triplet energy transfer experiments. | Beauchamp, Kyle A; Ensign, Daniel L; Das, Rhiju; Pande, Vijay S | Proceedings of the National Academy of Sciences of the United States of America | 2011 Aug 2 | 12734-9 | 21768345 |
| A generative approach for image-based modeling of tumor growth. | Menze, Bjoern H; Van Leemput, Koen; Honkela, Antti; Konukoglu, Ender; Weber, Marc-Andre; Ayache, Nicholas; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference | 2011 | 735-47 | 21761700 |
| White matter bundle registration and population analysis based on Gaussian processes. | Wassermann, Demian; Rathi, Yogesh; Bouix, Sylvain; Kubicki, Marek; Kikinis, Ron; Shenton, Martha; Westin, Carl-Fredrik | Information processing in medical imaging : proceedings of the ... conference | 2011 | 320-32 | 21761667 |
| Learning an atlas of a cognitive process in its functional geometry. | Langs, Georg; Lashkari, Danial; Sweet, Andrew; Tie, Yanmei; Rigolo, Laura; Golby, Alexandra J; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference | 2011 | 135-46 | 21761652 |
| Optimal data-driven sparse parameterization of diffeomorphisms for population analysis. | Durrleman, Sandy; Prastawa, Marcel; Gerig, Guido; Joshi, Sarang | Information processing in medical imaging : proceedings of the ... conference | 2011 | 123-34 | 21761651 |
| Adaptive Riemannian metrics for improved geodesic tracking of white matter. | Hao, Xiang; Whitaker, Ross T; Fletcher, P Thomas | Information processing in medical imaging : proceedings of the ... conference | 2011 | 13-24 | 21761642 |
| Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing. | Quinn, T A; Granite, S; Allessie, M A; Antzelevitch, C; Bollensdorff, C; Bub, G; Burton, R A B; Cerbai, E; Chen, P S; Delmar, M; Difrancesco, D; Earm, Y E; Efimov, I R; Egger, M; Entcheva, E; Fink, M; Fischmeister, R; Franz, M R; Garny, A; Giles, W R; Han | Progress in biophysics and molecular biology | 2011 Oct | 4-10 | 21745496 |
| BRAIN PATTERN ANALYSIS OF CORTICAL VALUED DISTRIBUTIONS. | Joshi, Shantanu H; Bowman, Ian; Toga, Arthur W; Van Horn, John D | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2011 Mar 30; | 21743844 | |
| fMRI of syntactic processing in typically developing children: structural correlates in the inferior frontal gyrus. | Nunez, S Christopher; Dapretto, Mirella; Katzir, Tami; Starr, Ariel; Bramen, Jennifer; Kan, Eric; Bookheimer, Susan; Sowell, Elizabeth R | Developmental cognitive neuroscience : a journal for cognitive, affective and social developmental neuroscience | 2011 Jul 1 | 313-323 | 21743820 |
| Assessment of mandibular advancement surgery with 3D CBCT models superimposition. | Motta, Alexandre Trindade Simões da; de Assis Ribeiro Carvalho, Felipe; Cevidanes, Lúcia Helena Soares; de Oliveira Almeida, Marco Antonio | Dental press journal of orthodontics. | 2010 Jan; | 21738889 | |
| Removing Shape-Preserving Transformations in Square-Root Elastic (SRE) Framework for Shape Analysis of Curves. | Joshi, Shantanu H; Klassen, Eric; Srivastava, Anuj; Jermyn, Ian | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 2007 | 387-398 | 21738385 |
| A knowledge discovery and reuse pipeline for information extraction in clinical notes. | Patrick, Jon D; Nguyen, Dung H M; Wang, Yefeng; Li, Min | Journal of the American Medical Informatics Association : JAMIA | 2011 Sep-Oct | 574-9 | 21737844 |
| The Cardiac Atlas Project--an imaging database for computational modeling and statistical atlases of the heart. | Fonseca, Carissa G; Backhaus, Michael; Bluemke, David A; Britten, Randall D; Chung, Jae Do; Cowan, Brett R; Dinov, Ivo D; Finn, J Paul; Hunter, Peter J; Kadish, Alan H; Lee, Daniel C; Lima, Joao A C; Medrano-Gracia, Pau; Shivkumar, Kalyanam; Suinesiaputra | Bioinformatics (Oxford, England) | 2011 Aug 15 | 2288-95 | 21737439 |
| Chronic intestinal inflammation induces stress-response genes in commensal Escherichia coli. | Patwa, Laura G; Fan, Ting-Jia; Tchaptchet, Sandrine; Liu, Yang; Lussier, Yves A; Sartor, R Balfour; Hansen, Jonathan J | Gastroenterology | 2011 Nov | 1842-51.e1-10 | 21726510 |
| Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer. | Kim, Jung H; Dhanasekaran, Saravana M; Prensner, John R; Cao, Xuhong; Robinson, Daniel; Kalyana-Sundaram, Shanker; Huang, Christina; Shankar, Sunita; Jing, Xiaojun; Iyer, Matthew; Hu, Ming; Sam, Lee; Grasso, Catherine; Maher, Christopher A; Palanisamy, Na | Genome research | 2011 Jul | 1028-41 | 21724842 |
| Informatics and standards for nanomedicine technology. | Thomas, Dennis G; Klaessig, Fred; Harper, Stacey L; Fritts, Martin; Hoover, Mark D; Gaheen, Sharon; Stokes, Todd H; Reznik-Zellen, Rebecca; Freund, Elaine T; Klemm, Juli D; Paik, David S; Baker, Nathan A | Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology | 2011 Jun 30 | NULL | 21721140 |
| Dark regions of no-reflow on late gadolinium enhancement magnetic resonance imaging result in scar formation after atrial fibrillation ablation. | McGann, Christopher; Kholmovski, Eugene; Blauer, Joshua; Vijayakumar, Sathya; Haslam, Thomas; Cates, Joshua; DiBella, Edward; Burgon, Nathan; Wilson, Brent; Alexander, Alton; Prastawa, Marcel; Daccarett, Marcos; Vergara, Gaston; Akoum, Nazem; Parker, Denn | Journal of the American College of Cardiology | 2011 Jul 5 | 177-85 | 21718914 |
| Role of sphingolipids in murine radiation-induced lung injury: protection by sphingosine 1-phosphate analogs. | Mathew, Biji; Jacobson, Jeffrey R; Berdyshev, Evgeny; Huang, Yong; Sun, Xiaoguang; Zhao, Yutong; Gerhold, Lynnette M; Siegler, Jessica; Evenoski, Carrie; Wang, Ting; Zhou, Tong; Zaidi, Rafe; Moreno-Vinasco, Liliana; Bittman, Robert; Chen, Chin Tu; LaRivie | FASEB journal : official publication of the Federation of American Societies for Experimental Biology | 2011 Oct | 3388-400 | 21712494 |
| RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways. | Mitra, Somdeb; Laederach, Alain; Golden, Barbara L; Altman, Russ B; Brenowitz, Michael | RNA (New York, N.Y.) | 2011 Aug | 1589-603 | 21712400 |
| CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms. | Kohlhoff, Kai J; Sosnick, Marc H; Hsu, William T; Pande, Vijay S; Altman, Russ B | Bioinformatics (Oxford, England) | 2011 Aug 15 | 2322-3 | 21712246 |
| Using machine learning for concept extraction on clinical documents from multiple data sources. | Torii, Manabu; Wagholikar, Kavishwar; Liu, Hongfang | Journal of the American Medical Informatics Association : JAMIA | 2011 Sep-Oct | 580-7 | 21709161 |
| Survey of modular ontology techniques and their applications in the biomedical domain. | Pathak, Jyotishman; Johnson, Thomas M; Chute, Christopher G | Integrated computer-aided engineering | 2009 Aug | 225-242 | 21686030 |
| Structure-based prediction reveals capping motifs that inhibit ýý-helix aggregation. | Bryan Jr, Allen W; Starner-Kreinbrink, Jennifer L; Hosur, Raghavendra; Clark, Patricia L; Berger, Bonnie | Proceedings of the National Academy of Sciences of the United States of America | 2011 Jul 5 | 11099-104 | 21685332 |
| 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. | Uzuner, Ozlem; South, Brett R; Shen, Shuying; DuVall, Scott L | Journal of the American Medical Informatics Association : JAMIA | 2011 Sep-Oct | 552-6 | 21685143 |
| Voxel-based morphometry (VBM) studies in schizophrenia-can white matter changes be reliably detected with VBM? | Melonakos, Eric D; Shenton, Martha E; Rathi, Yogesh; Terry, Douglas P; Bouix, Sylvain; Kubicki, Marek | Psychiatry research | 2011 Aug 30 | 65-70 | 21684124 |
| Using electronic medical records to enable large-scale studies in psychiatry: treatment resistant depression as a model. | Perlis, R H; Iosifescu, D V; Castro, V M; Murphy, S N; Gainer, V S; Minnier, J; Cai, T; Goryachev, S; Zeng, Q; Gallagher, P J; Fava, M; Weilburg, J B; Churchill, S E; Kohane, I S; Smoller, J W | Psychological medicine | 2012 Jan | 41-50 | 21682950 |
| RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples. | Alvarez, Angel; Woolf, Peter J | BMC bioinformatics | 2011 | 243 | 21682879 |
| MarkUs: a server to navigate sequence-structure-function space. | Fischer, Markus; Zhang, Qiangfeng Cliff; Dey, Fabian; Chen, Brian Y; Honig, Barry; Petrey, Donald | Nucleic acids research | 2011 Jul | W357-61 | 21672961 |
| BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. | Whetzel, Patricia L; Noy, Natalya F; Shah, Nigam H; Alexander, Paul R; Nyulas, Csongor; Tudorache, Tania; Musen, Mark A | Nucleic acids research | 2011 Jul | W541-5 | 21672956 |
| Using statistical and machine learning to help institutions detect suspicious access to electronic health records. | Boxwala, Aziz A; Kim, Jihoon; Grillo, Janice M; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2011 Jul-Aug | 498-505 | 21672912 |
| Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. | Chen, James L; Li, Jianrong; Stadler, Walter M; Lussier, Yves A | Journal of the American Medical Informatics Association : JAMIA | 2011 Jul-Aug | 392-402 | 21672909 |
| 2010 translational bioinformatics year in review. | Altman, Russ B; Miller, Katharine S | Journal of the American Medical Informatics Association : JAMIA | 2011 Jul-Aug | 358-66 | 21672905 |
| Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured in JAMIA. | Butte, Atul J; Shah, Nigam H | Journal of the American Medical Informatics Association : JAMIA | 2011 Jul-Aug | 352-3 | 21672904 |
| Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation. | Fabbri, Giulia; Rasi, Silvia; Rossi, Davide; Trifonov, Vladimir; Khiabanian, Hossein; Ma, Jing; Grunn, Adina; Fangazio, Marco; Capello, Daniela; Monti, Sara; Cresta, Stefania; Gargiulo, Ernesto; Forconi, Francesco; Guarini, Anna; Arcaini, Luca; Paulli, Ma | The Journal of experimental medicine | 2011 Jul 4 | 1389-401 | 21670202 |
| SOCR Analyses: Implementation and Demonstration of a New Graphical Statistics Educational Toolkit. | Chu, Annie; Cui, Jenny; Dinov, Ivo D | Journal of statistical software | 2009 Apr 1 | 1-19 | 21666874 |
| Enhanced brain connectivity in long-term meditation practitioners. | Luders, Eileen; Clark, Kristi; Narr, Katherine L; Toga, Arthur W | NeuroImage | 2011 Aug 15 | 1308-16 | 21664467 |
| BRAF mutations in hairy-cell leukemia. | Tiacci, Enrico; Trifonov, Vladimir; Schiavoni, Gianluca; Holmes, Antony; Kern, Wolfgang; Martelli, Maria Paola; Pucciarini, Alessandra; Bigerna, Barbara; Pacini, Roberta; Wells, Victoria A; Sportoletti, Paolo; Pettirossi, Valentina; Mannucci, Roberta; Ell | The New England journal of medicine | 2011 Jun 16 | 2305-15 | 21663470 |
| Robust Feature Selection in Resting-State fMRI Connectivity Based on Population Studies. | Venkataraman, Archana; Kubicki, Marek; Westin, Carl-Fredrik; Golland, Polina | Conference on Computer Vision and Pattern Recognition Workshops IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Workshops | 2010 | 63-70 | 21660131 |
| Rare de novo variants associated with autism implicate a large functional network of genes involved in formation and function of synapses. | Gilman, Sarah R; Iossifov, Ivan; Levy, Dan; Ronemus, Michael; Wigler, Michael; Vitkup, Dennis | Neuron | 2011 Jun 9 | 898-907 | 21658583 |
| Populations with elevated mutation load do not benefit from the operation of sexual selection. | Hollis, B; Houle, D | Journal of evolutionary biology | 2011 Sep | 1918-26 | 21658188 |
| Confidence interval based parameter estimation--a new SOCR applet and activity. | Christou, Nicolas; Dinov, Ivo D | PloS one | 2011 | e19178 | 21655319 |
| Reconstruction Using Witness Complexes. | Guibas, Leonidas J; Oudot, Steve Y | Discrete & computational geometry | 2008 Oct 1 | 325-356 | 21643440 |
| Ontological realism: A methodology for coordinated evolution of scientific ontologies. | Smith, Barry; Ceusters, Werner | Applied ontology | 2010 Nov 15 | 139-188 | 21637730 |
| Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association. | Shen, Yufeng; Song, Ruijie; Pe'er, Itsik | Bioinformatics (Oxford, England) | 2011 Jul 15 | 1995-7 | 21636589 |
| A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas. | Farrah, Terry; Deutsch, Eric W; Omenn, Gilbert S; Campbell, David S; Sun, Zhi; Bletz, Julie A; Mallick, Parag; Katz, Jonathan E; Malmstrom, Johan; Ossola, Reto; Watts, Julian D; Lin, Biaoyang; Zhang, Hui; Moritz, Robert L; Aebersold, Ruedi | Molecular & cellular proteomics : MCP | 2011 Sep | M110.006353 | 21632744 |
| Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources. | Pathak, Jyotishman; Jiang, Guoqian; Dwarkanath, Sridhar O; Buntrock, James D; Chute, Christopher G | Proceedings / IEEE International Conference on Semantic Computing ... ICSC. IEEE International Conference on Semantic Computing | 2008 Aug 12 | 460-467 | 21625412 |
| Modular Ontology Techniques and their Applications in the Biomedical Domain. | Pathak, Jyotishman; Johnson, Thomas M; Chute, Christopher G | Proceedings of the ... IEEE International Conference on Information Reuse and Integration. IEEE International Conference on Information Reuse and Integration | 2008 Aug 5 | 351-356 | 21625409 |
| Modeling of Anatomical Information in Clustering of White Matter Fiber Trajectories Using Dirichlet Distribution. | Maddah, Mahnaz; Zollei, Lilla; Grimson, W Eric L; Wells, William M | Proceedings / sponsored by IEEE Computer Society Technical Committee on Pattern Analysis and Machine Intelligence. Workshop on Mathematical Methods in Biomedical Image Analysis | 2008 Jul 15 | 1-7 | 21625356 |
| HyQue: evaluating hypotheses using Semantic Web technologies. | Callahan, Alison; Dumontier, Michel; Shah, Nigam H | Journal of biomedical semantics. | 2011 May 17; | 21624158 | |
| How orthogonal are the OBO Foundry ontologies? | Ghazvinian, Amir; Noy, Natalya F; Musen, Mark A | Journal of biomedical semantics. | 2011 May 17; | 21624157 | |
| Integration and publication of heterogeneous text-mined relationships on the Semantic Web. | Coulet, Adrien; Garten, Yael; Dumontier, Michel; Altman, Russ B; Musen, Mark A; Shah, Nigam H | Journal of biomedical semantics. | 2011 May 17; | 21624156 | |
| DASH: a method for identical-by-descent haplotype mapping uncovers association with recent variation. | Gusev, Alexander; Kenny, Eimear E; Lowe, Jennifer K; Salit, Jaqueline; Saxena, Richa; Kathiresan, Sekar; Altshuler, David M; Friedman, Jeffrey M; Breslow, Jan L; Pe'er, Itsik | American journal of human genetics | 2011 Jun 10 | 706-17 | 21620352 |
| Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks. | Alvarez, Angel; Woolf, Peter J | BMC systems biology | 2011 | 86 | 21619639 |
| Transcriptional profiling of diabetic neuropathy in the BKS db/db mouse: a model of type 2 diabetes. | Pande, Manjusha; Hur, Junguk; Hong, Yu; Backus, Carey; Hayes, John M; Oh, Sang Su; Kretzler, Matthias; Feldman, Eva L | Diabetes | 2011 Jul | 1981-9 | 21617178 |
| Can biomechanical variables predict improvement in crouch gait? | Hicks, Jennifer L; Delp, Scott L; Schwartz, Michael H | Gait & posture | 2011 Jun | 197-201 | 21616666 |
| Variants of the caveolin-1 gene: a translational investigation linking insulin resistance and hypertension. | Pojoga, Luminita H; Underwood, Patricia C; Goodarzi, Mark O; Williams, Jonathan S; Adler, Gail K; Jeunemaitre, Xavier; Hopkins, Paul N; Raby, Benjamin A; Lasky-Su, Jessica; Sun, Bei; Cui, Jinrui; Guo, Xiuqing; Taylor, Kent D; Chen, Yii-Der Ida; Xiang, Ann | The Journal of clinical endocrinology and metabolism | 2011 Aug | E1288-92 | 21613355 |
| PredUs: a web server for predicting protein interfaces using structural neighbors. | Zhang, Qiangfeng Cliff; Deng, Lei; Fisher, Markus; Guan, Jihong; Honig, Barry; Petrey, Donald | Nucleic acids research | 2011 Jul | W283-7 | 21609948 |
| Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization. | Luo, Weijun; Friedman, Michael S; Hankenson, Kurt D; Woolf, Peter J | BMC systems biology | 2011 | 82 | 21605425 |
| Computational modeling of bone density profiles in response to gait: a subject-specific approach. | Pang, Henry; Shiwalkar, Abhishek P; Madormo, Chris M; Taylor, Rebecca E; Andriacchi, Thomas P; Kuhl, Ellen | Biomechanics and modeling in mechanobiology | 2012 Mar | 379-90 | 21604146 |
| Law of Large Numbers: the Theory, Applications and Technology-based Education. | Dinov, Ivo D; Christou, Nicolas; Gould, Robert | Journal of statistics education : an international journal on the teaching and learning of statistics | 2009 Mar | 1-19 | 21603584 |
| A Study of Students' Learning Styles, Discipline Attitudes and Knowledge Acquisition in Technology-Enhanced Probability and Statistics Education. | Christou, Nicolas; Dinov, Ivo D | Journal of online learning and teaching / MERLOT | 2010 Sep | 21603097 | |
| Hybrid methods for improving information access in clinical documents: concept, assertion, and relation identification. | Minard, Anne-Lyse; Ligozat, Anne-Laure; Ben Abacha, Asma; Bernhard, Delphine; Cartoni, Bruno; Deleger, Louise; Grau, Brigitte; Rosset, Sophie; Zweigenbaum, Pierre; Grouin, Cyril | Journal of the American Medical Informatics Association : JAMIA | 2011 Sep-Oct | 588-93 | 21597105 |
| Regulation of X-chromosome inactivation by the X-inactivation centre. | Augui, Sandrine; Nora, Elphege P; Heard, Edith | Nature reviews. Genetics | 2011 Jun | 429-42 | 21587299 |
| Intelligence and cortical thickness in children with complex partial seizures. | Tosun, Duygu; Caplan, Rochelle; Siddarth, Prabha; Seidenberg, Michael; Gurbani, Suresh; Toga, Arthur W; Hermann, Bruce | NeuroImage | 2011 Jul 15 | 337-45 | 21586333 |
| Estimation of Myocardial Volume at Risk from CT Angiography. | Zhu, Liangjia; Gao, Yi; Mohan, Vandana; Stillman, Arthur; Faber, Tracy; Tannenbaum, Allen | Proceedings of SPIE--the International Society for Optical Engineering. | 2011 Mar 9; | 79632A-79632A6 | 21572535 |
| Mapping corticocortical structural integrity in schizophrenia and effects of genetic liability. | Phillips, Owen R; Nuechterlein, Keith H; Asarnow, Robert F; Clark, Kristi A; Cabeen, Ryan; Yang, Yaling; Woods, Roger P; Toga, Arthur W; Narr, Katherine L | Biological psychiatry | 2011 Oct 1 | 680-9 | 21571255 |
| Machine-learned solutions for three stages of clinical information extraction: the state of the art at i2b2 2010. | de Bruijn, Berry; Cherry, Colin; Kiritchenko, Svetlana; Martin, Joel; Zhu, Xiaodan | Journal of the American Medical Informatics Association : JAMIA | 2011 Sep-Oct | 557-62 | 21565856 |
| Translational bioinformatics: linking knowledge across biological and clinical realms. | Sarkar, Indra Neil; Butte, Atul J; Lussier, Yves A; Tarczy-Hornoch, Peter; Ohno-Machado, Lucila | Journal of the American Medical Informatics Association : JAMIA | 2011 Jul-Aug | 354-7 | 21561873 |
| Preliminary evidence of within-subject changes in gray matter density associated with remission of bipolar depression. | Brooks 3rd, John O; Foland-Ross, Lara C; Thompson, Paul M; Altshuler, Lori L | Psychiatry research | 2011 Jul 30 | 53-5 | 21561743 |
| Diffusion tensor imaging of anterior commissural fibers in patients with schizophrenia. | Choi, Hongyoon; Kubicki, Marek; Whitford, Thomas J; Alvarado, Jorge L; Terry, Douglas P; Niznikiewicz, Margaret; McCarley, Robert W; Kwon, Jun Soo; Shenton, Martha E | Schizophrenia research | 2011 Aug | 78-85 | 21561738 |
| Integrated, Multidisciplinary and Technology-Enhanced Science Education: The Next Frontier. | Dinov, Ivo D | Journal of online learning and teaching / MERLOT | 2008 Mar 1 | 84-93 | 21552453 |
| Enabling enrichment analysis with the Human Disease Ontology. | LePendu, Paea; Musen, Mark A; Shah, Nigam H | Journal of biomedical informatics | 2011 Dec | S31-8 | 21550421 |
| SOCR Analyses - an Instructional Java Web-based Statistical Analysis Toolkit. | Chu, Annie; Cui, Jenny; Dinov, Ivo D | Journal of online learning and teaching / MERLOT | 2009 Mar 1 | 1-18 | 21546994 |
| Early brain overgrowth in autism associated with an increase in cortical surface area before age 2 years. | Hazlett, Heather Cody; Poe, Michele D; Gerig, Guido; Styner, Martin; Chappell, Chad; Smith, Rachel Gimpel; Vachet, Clement; Piven, Joseph | Archives of general psychiatry | 2011 May | 467-76 | 21536976 |
| HD CAG-correlated gene expression changes support a simple dominant gain of function. | Jacobsen, Jessie C; Gregory, Gillian C; Woda, Juliana M; Thompson, Morgan N; Coser, Kathryn R; Murthy, Vidya; Kohane, Isaac S; Gusella, James F; Seong, Ihn Sik; MacDonald, Marcy E; Shioda, Toshi; Lee, Jong-Min | Human molecular genetics | 2011 Jul 15 | 2846-60 | 21536587 |
| Spatially regularized compressed sensing for high angular resolution diffusion imaging. | Michailovich, Oleg; Rathi, Yogesh; Dolui, Sudipto | IEEE transactions on medical imaging | 2011 May | 1100-15 | 21536524 |
| Testing and Validating Machine Learning Classifiers by Metamorphic Testing. | Xie, Xiaoyuan; Ho, Joshua W K; Murphy, Christian; Kaiser, Gail; Xu, Baowen; Chen, Tsong Yueh | The Journal of systems and software | 2011 Apr 1 | 544-558 | 21532969 |
| The Fok1 vitamin D receptor gene polymorphism is associated with plasma renin activity in Caucasians. | Vaidya, Anand; Sun, Bei; Forman, John P; Hopkins, Paul N; Brown, Nancy J; Kolatkar, Nikheel S; Williams, Gordon H; Williams, Jonathan S | Clinical endocrinology | 2011 Jun | 783-90 | 21521263 |
| Clinical application of 3D imaging for assessment of treatment outcomes. | Cevidanes, Lucia H C; Oliveira, Ana Emilia Figueiredo; Grauer, Dan; Styner, Martin; Proffit, William R | Seminars in orthodontics. | 2011 Mar 1; | 72-80 | 21516170 |
| In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: a surface-based analysis. | Cohen-Adad, J; Benner, T; Greve, D; Kinkel, R P; Radding, A; Fischl, B; Rosen, B R; Mainero, C | NeuroImage | 2011 Jul 1 | 55-62 | 21511042 |
| Graphical procedures for evaluating overall and subject-specific incremental values from new predictors with censored event time data. | Uno, Hajime; Cai, Tianxi; Tian, Lu; Wei, L J | Biometrics | 2011 Dec | 1389-96 | 21504421 |
| Fibre operating lengths of human lower limb muscles during walking. | Arnold, Edith M; Delp, Scott L | Philosophical transactions of the Royal Society of London. Series B, Biological sciences | 2011 May 27 | 1530-9 | 21502124 |
| Three-dimensional quantification of mandibular asymmetry through cone-beam computerized tomography. | Cevidanes, Lucia H S; Alhadidi, Abeer; Paniagua, Beatriz; Styner, Martin; Ludlow, John; Mol, Andre; Turvey, Timothy; Proffit, William R; Rossouw, Paul Emile | Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics. | 2011 Jun; | 21497527 | |
| Object tracking and target reacquisition based on 3-D range data for moving vehicles. | Lee, Jehoon; Lankton, Shawn; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 2011 Oct | 2912-24 | 21486717 |
| Remote thioredoxin recognition using evolutionary conservation and structural dynamics. | Tang, Grace W; Altman, Russ B | Structure (London, England : 1993) | 2011 Apr 13 | 461-70 | 21481770 |
| XCEDE: an extensible schema for biomedical data. | Gadde, Syam; Aucoin, Nicole; Grethe, Jeffrey S; Keator, David B; Marcus, Daniel S; Pieper, Steve; FBIRN, MBIRN, BIRN-CC | Neuroinformatics | 2012 Jan | 19-32 | 21479735 |
| SOCR Motion Charts: An Efficient, Open-Source, Interactive and Dynamic Applet for Visualizing Longitudinal Multivariate Data. | Al-Aziz, Jameel; Christou, Nicolas; Dinov, Ivo D | Journal of statistics education : an international journal on the teaching and learning of statistics. | 2010; | 21479108 | |
| Fast approximate stochastic tractography. | Iglesias, Juan Eugenio; Thompson, Paul M; Liu, Cheng-Yi; Tu, Zhuowen | Neuroinformatics | 2012 Jan | 5-17 | 21476037 |
| Data Synthesis and Tool Development for Exploring Imaging Genomic Patterns. | Kim, Sungeun; Shen, Li; Saykin, Andrew J; West, John D | IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology proceedings IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. | 2009 Mar 30; | 298-305 | 21461341 |
| Aberrantly Expressed Genes in HaCaT Keratinocytes Chronically Exposed to Arsenic Trioxide. | Udensi, Udensi K; Cohly, Hari H P; Graham-Evans, Barbara E; Ndebele, Kenneth; Garcia-Reyero, Natàlia; Nanduri, Bindu; Tchounwou, Paul B; Isokpehi, Raphael D | Biomarker insights. | 2011 Feb 08; | 21461292 | |
| Configuration Fuzzing for Software Vulnerability Detection. | Dai, Huning; Murphy, Christian; Kaiser, Gail | Proceedings / The ... International Conference on Availability, Reliability and Security. International Conference on Availability, Reliability and Security | 2010 Feb 15 | 525-530 | 21461049 |
| Hippocampal morphology in lithium and non-lithium-treated bipolar I disorder patients, non-bipolar co-twins, and control twins. | van Erp, Theo G M; Thompson, Paul M; Kieseppa, Tuula; Bearden, Carrie E; Marino, Alexandria C; Hoftman, Gil D; Haukka, Jari; Partonen, Timo; Huttunen, Matti; Kaprio, Jaakko; Lonnqvist, Jouko; Poutanen, Veli-Pekka; Toga, Arthur W; Cannon, Tyrone D | Human brain mapping. | 2012 Mar; | 501-10 | 21455943 |
| SOCR: Statistics Online Computational Resource. | Dinov, Ivo D | Journal of statistical software | 2006 Oct 1 | 21451741 | |
| Impact of nonrigid motion correction technique on pixel-wise pharmacokinetic analysis of free-breathing pulmonary dynamic contrast-enhanced MR imaging. | Tokuda, Junichi; Mamata, Hatsuho; Gill, Ritu R; Hata, Nobuhiko; Kikinis, Ron; Padera Jr, Robert F; Lenkinski, Robert E; Sugarbaker, David J; Hatabu, Hiroto | Journal of magnetic resonance imaging : JMRI | 2011 Apr | 968-73 | 21448965 |
| Planum temporale grey matter asymmetries in chimpanzees (Pan troglodytes), vervet (Chlorocebus aethiops sabaeus), rhesus (Macaca mulatta) and bonnet (Macaca radiata) monkeys. | Lyn, Heidi; Pierre, Peter; Bennett, Allyson J; Fears, Scott; Woods, Roger; Hopkins, William D | Neuropsychologia | 2011 Jun | 2004-12 | 21447349 |
| Surface-based TBM boosts power to detect disease effects on the brain: an N=804 ADNI study. | Wang, Yalin; Song, Yang; Rajagopalan, Priya; An, Tuo; Liu, Krystal; Chou, Yi-Yu; Gutman, Boris; Toga, Arthur W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative | NeuroImage | 2011 Jun 15 | 1993-2010 | 21440071 |
| In vitro validation of finite-element model of AAA hemodynamics incorporating realistic outlet boundary conditions. | Kung, Ethan O; Les, Andrea S; Medina, Francisco; Wicker, Ryan B; McConnell, Michael V; Taylor, Charles A | Journal of biomechanical engineering | 2011 Apr | 041003 | 21428677 |
| GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. | Yang, Xinan; Li, Jianrong; Lee, Younghee; Lussier, Yves A | Bioinformatics (Oxford, England) | 2011 May 15 | 1444-6 | 21421553 |
| Appearance frequency modulated gene set enrichment testing. | Ma, Jun; Sartor, Maureen A; Jagadish, H V | BMC bioinformatics | 2011 | 81 | 21418606 |
| Regional brain volume reductions relate to facial dysmorphology and neurocognitive function in fetal alcohol spectrum disorders. | Roussotte, Florence F; Sulik, Kathleen K; Mattson, Sarah N; Riley, Edward P; Jones, Kenneth L; Adnams, Colleen M; May, Philip A; O'Connor, Mary J; Narr, Katherine L; Sowell, Elizabeth R | Human brain mapping | 2012 Apr | 920-37 | 21416562 |
| AnyExpress: integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm. | Kim, Jihoon; Patel, Kiltesh; Jung, Hyunchul; Kuo, Winston P; Ohno-Machado, Lucila | BMC bioinformatics | 2011 | 75 | 21410990 |
| In vitro validation of finite element analysis of blood flow in deformable models. | Kung, Ethan O; Les, Andrea S; Figueroa, C Alberto; Medina, Francisco; Arcaute, Karina; Wicker, Ryan B; McConnell, Michael V; Taylor, Charles A | Annals of biomedical engineering | 2011 Jul | 1947-60 | 21404126 |
| The influence of body mass index and renin-angiotensin-aldosterone system activity on the relationship between 25-hydroxyvitamin D and adiponectin in Caucasian men. | Vaidya, Anand; Forman, John P; Underwood, Patricia C; Hopkins, Paul N; Williams, Gordon H; Pojoga, Luminita H; Williams, Jonathan S | European journal of endocrinology / European Federation of Endocrine Societies | 2011 Jun | 995-1002 | 21402748 |
| Deformation-based morphometry of prospective neurodevelopmental changes in new onset paediatric epilepsy. | Tosun, Duygu; Dabbs, Kevin; Caplan, Rochelle; Siddarth, Prabha; Toga, Arthur; Seidenberg, Michael; Hermann, Bruce | Brain : a journal of neurology | 2011 Apr | 1003-14 | 21398377 |
| Increased SRF transcriptional activity in human and mouse skeletal muscle is a signature of insulin resistance. | Jin, Wanzhu; Goldfine, Allison B; Boes, Tanner; Henry, Robert R; Ciaraldi, Theodore P; Kim, Eun-Young; Emecan, Merve; Fitzpatrick, Connor; Sen, Anish; Shah, Ankit; Mun, Edward; Vokes, Vokes; Schroeder, Joshua; Tatro, Elizabeth; Jimenez-Chillaron, Jose; Pa | The Journal of clinical investigation | 2011 Mar | 918-29 | 21393865 |
| Effects of childhood absence epilepsy on associations between regional cortical morphometry and aging and cognitive abilities. | Tosun, Duygu; Siddarth, Prabha; Toga, Arthur W; Hermann, Bruce; Caplan, Rochelle | Human brain mapping | 2011 Apr | 580-91 | 21391248 |
| Mapping between the OBO and OWL ontology languages. | Tirmizi, Syed Hamid; Aitken, Stuart; Moreira, Dilvan A; Mungall, Chris; Sequeda, Juan; Shah, Nigam H; Miranker, Daniel P | Journal of biomedical semantics. | 2011 Mar 07; | 21388572 | |
| Compressing genomic sequence fragments using SlimGene. | Kozanitis, Christos; Saunders, Chris; Kruglyak, Semyon; Bafna, Vineet; Varghese, George | Journal of computational biology : a journal of computational molecular cell biology | 2011 Mar | 401-13 | 21385043 |
| RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS. | Wahlby, Carolina; Riklin-Raviv, Tammy; Ljosa, Vebjorn; Conery, Annie L; Golland, Polina; Ausubel, Frederick M; Carpenter, Anne E | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2010 Jun 21 | 552-555 | 21383863 |
| Double dissociation in the anatomy of socioemotional disinhibition and executive functioning in dementia. | Krueger, Casey E; Laluz, Victor; Rosen, Howard J; Neuhaus, John M; Miller, Bruce L; Kramer, Joel H | Neuropsychology | 2011 Mar | 249-59 | 21381829 |
| Shape alterations in the striatum in chorea-acanthocytosis. | Walterfang, Mark; Looi, Jeffrey Chee Leong; Styner, Martin; Walker, Ruth H; Danek, Adrian; Niethammer, Marc; Evans, Andrew; Kotschet, Katya; Rodrigues, Guilherme R; Hughes, Andrew; Velakoulis, Dennis | Psychiatry research | 2011 Apr 30 | 29-36 | 21377843 |
| Automated analysis of fundamental features of brain structures. | Lancaster, Jack L; McKay, D Reese; Cykowski, Matthew D; Martinez, Michael J; Tan, Xi; Valaparla, Sunil; Zhang, Yi; Fox, Peter T | Neuroinformatics | 2011 Dec | 371-80 | 21360205 |
| Extraction of Conditional Probabilities of the Relationships Between Drugs, Diseases, and Genes from PubMed Guided by Relationships in PharmGKB. | Theobald, Martin; Shah, Nigam; Shrager, Jeff | Summit on translational bioinformatics. | 2009; | 124-8 | 21347183 |
| Toward an ontological treatment of disease and diagnosis. | Scheuermann, Richard H; Ceusters, Werner; Smith, Barry | Summit on translational bioinformatics. | 2009; | 116-20 | 21347182 |
| Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. | Pantazatos, Spiro P; Li, Jianrong; Pavlidis, Paul; Lussier, Yves A | Summit on translational bioinformatics. | 2009 Mar 01; | 21347176 | |
| Integrating automated workflows, human intelligence and collaboration. | Mirel, Barbara; Eichinger, Felix; Nair, Viji; Kretzler, Matthias | Summit on translational bioinformatics. | 2009 Mar 01; | 21347175 | |
| The open biomedical annotator. | Jonquet, Clement; Shah, Nigam H; Musen, Mark A | Summit on translational bioinformatics. | 2009; | 56-60 | 21347171 |
| Comorbidity of bipolar disorder with substance abuse: selection of prioritized genes for translational research. | Isokpehi, Raphael D; Lewis, Sharon A; Oyeleye, Tolulola O; Ayensu, Wellington K; Gerald, Tonya M | Summit on translational bioinformatics. | 2009 Mar 01; | 21347170 | |
| User requirements for exploring a resource inventory for clinical research. | Mirel, Barbara R; Wright, Zachary; Tenenbaum, Jessica D; Saxman, Paul; Smith, Kevin A | AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. | 2010 Mar 01; | 21347144 | |
| Biomolecular Systems of Disease Buried Across Multiple GWAS Unveiled by Information Theory and Ontology. | Lee, Younghee; Li, Jianrong; Gamazon, Eric; Chen, James L; Tikhomirov, Anna; Cox, Nancy J; Lussier, Yves A | AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science | 2010 | 31-5 | 21347143 |
| Evaluation of an Ontology-anchored Natural Language-based Approach for Asserting Multi-scale Biomolecular Networks for Systems Medicine. | Borlawsky, Tara B; Li, Jianrong; Shagina, Lyudmila; Crowson, Matthew G; Liu, Yang; Friedman, Carol; Lussier, Yves A | AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science | 2010 | 6-10 | 21347135 |
| A diagram editor for efficient biomedical knowledge capture and integration. | Yu, Bohua; Jakupovic, Elvis; Wilson, Justin; Dai, Manhong; Xuan, Weijian; Mirel, Barbara; Athey, Brian; Watson, Stanley; Meng, Fan | Summit on translational bioinformatics. | 2008 Mar 01; | 21347131 | |
| Toward the commoditization of translational genomic research: Design and implementation features of the Galaxy genomic workbench. | Lazarus, Ross; Taylor, James; Qiu, Weiliang; Nekrutenko, Anton | Summit on translational bioinformatics. | 2008 Mar 01; | 21347127 | |
| A Comprehensive Analysis of Five Million UMLS Metathesaurus Terms Using Eighteen Million MEDLINE Citations. | Xu, Rong; Musen, Mark A; Shah, Nigam H | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2010; | 907-11 | 21347110 |
| An ontology-neutral framework for enrichment analysis. | Tirrell, Rob; Evani, Uday; Berman, Ari E; Mooney, Sean D; Musen, Mark A; Shah, Nigam H | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2010; | 797-801 | 21347088 |
| CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. | Tao, Cui; Wei, Wei-Qi; Solbrig, Harold R; Savova, Guergana; Chute, Christopher G | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2010; | 787-91 | 21347086 |
| The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies. | Parai, Gautam K; Jonquet, Clement; Xu, Rong; Musen, Mark A; Shah, Nigam H | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2010; | 587-91 | 21347046 |
| The ontology life cycle: Integrated tools for editing, publishing, peer review, and evolution of ontologies. | Noy, Natalya; Tudorache, Tania; Nyulas, Csongor; Musen, Mark | AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. | 2010; | 552-6 | 21347039 |
| Automatic Prediction of Conversion from Mild Cognitive Impairment to Probable Alzheimer's Disease using Structural Magnetic Resonance Imaging. | Nho, Kwangsik; Shen, Li; Kim, Sungeun; Risacher, Shannon L; West, John D; Foroud, Tatiana; Jack, Clifford R; Weiner, Michael W; Saykin, Andrew J | AMIA ... Annual Symposium proceedings. AMIA Symposium. | 2010 Nov 13; | 21347037 | |
| Strobe sequence design for haplotype assembly. | Lo, Christine; Bashir, Ali; Bansal, Vikas; Bafna, Vineet | BMC bioinformatics | 2011 | S24 | 21342554 |
| Identification of common microRNA-mRNA regulatory biomodules in human epithelial cancers. | Yang, Xinan; Lee, Younghee; Fan, Hong; Sun, Xiao; Lussier, Yves A | Chinese science bulletin = Kexue tongbao | 2010 Nov | 3576-3589 | 21340045 |
| Anisotropic Laplace-Beltrami Eigenmaps: Bridging Reeb Graphs and Skeletons. | Shi, Yonggang; Lai, Rongjie; Krishna, Sheila; Sicotte, Nancy; Dinov, Ivo; Toga, Arthur W | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. | 2008 Jul 15; | 7-Jan | 21339850 |
| LAPLACE-BELTRAMI NODAL COUNTS: A NEW SIGNATURE FOR 3D SHAPE ANALYSIS. | Lai, Rongjie; Shi, Yonggang; Dinov, Ivo; Chan, Tony F; Toga, Arthur W | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging. | 2009 Aug 7; | 694-697 | 21339849 |
| FADTTS: functional analysis of diffusion tensor tract statistics. | Zhu, Hongtu; Kong, Linglong; Li, Runze; Styner, Martin; Gerig, Guido; Lin, Weili; Gilmore, John H | NeuroImage | 2011 Jun 1 | 1412-25 | 21335092 |
| BN+1 Bayesian network expansion for identifying molecular pathway elements. | Hodges, Andrew P; Woolf, Peter; He, Yongqun | Communicative & integrative biology. | 2010 Nov; | 21331236 | |
| Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. | Kinsella, Marcus; Harismendy, Olivier; Nakano, Masakazu; Frazer, Kelly A; Bafna, Vineet | Bioinformatics (Oxford, England) | 2011 Apr 15 | 1068-75 | 21330288 |
| Comprehensive genetic assessment of a functional TLR9 promoter polymorphism: no replicable association with asthma or asthma-related phenotypes. | Lange, Nancy E; Zhou, Xiaobo; Lasky-Su, Jessica; Himes, Blanca E; Lazarus, Ross; Soto-Quiros, Manuel; Avila, Lydiana; Celedon, Juan C; Hawrylowicz, Catherine M; Raby, Benjamin A; Litonjua, Augusto A | BMC medical genetics | 2011 | 26 | 21324137 |
| A Novel Representation for Riemannian Analysis of Elastic Curves in ýýý | Joshi, Shantanu H; Klassen, Eric; Srivastava, Anuj; Jermyn, Ian | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 2007 Jul 16 | 1-7 | 21311729 |
| Concept Systems and Ontologies: Recommendations for Basic Terminology. | Klein, Gunnar O; Smith, Barry | Transactions of the Japanese Society for Artificial Intelligence = Jinko Chino Gakkai ronbunshi | 2010 Jan 1 | 433-441 | 21308002 |
| The association of the angiotensinogen gene with insulin sensitivity in humans: a tagging single nucleotide polymorphism and haplotype approach. | Underwood, Patricia C; Sun, Bei; Williams, Jonathan S; Pojoga, Luminita H; Raby, Benjamin; Lasky-Su, Jessica; Hunt, Steven; Hopkins, Paul N; Jeunemaitre, Xavier; Adler, Gail K; Williams, Gordon H | Metabolism: clinical and experimental | 2011 Aug | 1150-7 | 21306748 |
| Mean diffusivity and fractional anisotropy as indicators of disease and genetic liability to schizophrenia. | Clark, Kristi A; Nuechterlein, Keith H; Asarnow, Robert F; Hamilton, Liberty S; Phillips, Owen R; Hageman, Nathan S; Woods, Roger P; Alger, Jeffry R; Toga, Arthur W; Narr, Katherine L | Journal of psychiatric research | 2011 Jul | 980-8 | 21306734 |
| Meeting Report from the Second ''Minimum Information for Biological and Biomedical Investigations'' (MIBBI) workshop. | Kettner, Carsten; Field, Dawn; Sansone, Susanna-Assunta; Taylor, Chris; Aerts, Jan; Binns, Nigel; Blake, Andrew; Britten, Cedrik M; de Marco, Ario; Fostel, Jennifer; Gaudet, Pascale; Gonzalez-Beltran, Alejandra; Hardy, Nigel; Hellemans, Jan; Hermjakob, He | Standards in genomic sciences. | 2010; | 259-66 | 21304730 |
| Statistics Online Computational Resource for Education. | Dinov, Ivo D; Christou, Nicolas | Teaching statistics. | 2009 May; | 49-51 | 21297884 |
| Evidence for somatic gene conversion and deletion in bipolar disorder, Crohn's disease, coronary artery disease, hypertension, rheumatoid arthritis, type-1 diabetes, and type-2 diabetes. | Ross, Kenneth Andrew | BMC medicine | 2011 | 12 | 21291537 |
| AN EFFICIENT NUMERICAL METHOD FOR THE SOLUTION OF THE L(2) OPTIMAL MASS TRANSFER PROBLEM. | Haber, Eldad; Rehman, Tauseef; Tannenbaum, Allen | SIAM journal on scientific computing : a publication of the Society for Industrial and Applied Mathematics | 2010 | 197-211 | 21278828 |
| TETRAHEDRAL MESH GENERATION FOR MEDICAL IMAGES WITH MULTIPLE REGIONS USING ACTIVE SURFACES. | Lederman, Carl; Joshi, Anand; Dinov, Ivo; Van Horn, John Darrell; Vese, Luminita; Toga, Arthur | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2010 Apr 14 | 436-439 | 21278816 |
| Statistical analysis of fiber bundles using multi-tensor tractography: application to first-episode schizophrenia. | Rathi, Yogesh; Kubicki, Marek; Bouix, Sylvain; Westin, Carl-Fredrik; Goldstein, Jill; Seidman, Larry; Mesholam-Gately, Raquelle; McCarley, Robert W; Shenton, Martha E | Magnetic resonance imaging. | 2011 May; | 507-15 | 21277725 |
| Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment. | Costafreda, Sergi G; Dinov, Ivo D; Tu, Zhuowen; Shi, Yonggang; Liu, Cheng-Yi; Kloszewska, Iwona; Mecocci, Patrizia; Soininen, Hilkka; Tsolaki, Magda; Vellas, Bruno; Wahlund, Lars-Olof; Spenger, Christian; Toga, Arthur W; Lovestone, Simon; Simmons, Andrew | NeuroImage | 2011 May 1 | 212-9 | 21272654 |
| Loss of subcellular lipid transport due to ARV1 deficiency disrupts organelle homeostasis and activates the unfolded protein response. | Shechtman, Caryn F; Henneberry, Annette L; Seimon, Tracie A; Tinkelenberg, Arthur H; Wilcox, Lisa J; Lee, Eunjee; Fazlollahi, Mina; Munkacsi, Andrew B; Bussemaker, Harmen J; Tabas, Ira; Sturley, Stephen L | The Journal of biological chemistry | 2011 Apr 8 | 11951-9 | 21266578 |
| Brain structure correlates of individual differences in the acquisition and inhibition of conditioned fear. | Hartley, Catherine A; Fischl, Bruce; Phelps, Elizabeth A | Cerebral cortex (New York, N.Y. : 1991) | 2011 Sep | 1954-62 | 21263037 |
| Stochastic tractography study of Inferior Frontal Gyrus anatomical connectivity in schizophrenia. | Kubicki, Marek; Alvarado, Jorge L; Westin, Carl-Fredrik; Tate, David F; Markant, Douglas; Terry, Douglas P; Whitford, Thomas J; De Siebenthal, Julien; Bouix, Sylvain; McCarley, Robert W; Kikinis, Ron; Shenton, Martha E | NeuroImage | 2011 Apr 15 | 1657-64 | 21256966 |
| Three-dimensional regional displacements after mandibular advancement surgery: one year of follow-up. | Motta, Alexandre T; Cevidanes, Lucia H S; Carvalho, Felipe A R; Almeida, Marco A O; Phillips, Ceib | Journal of oral and maxillofacial surgery : official journal of the American Association of Oral and Maxillofacial Surgeons. | 2011 May; | 1447-57 | 21256643 |
| DTI registration in atlas based fiber analysis of infantile Krabbe disease. | Wang, Yi; Gupta, Aditya; Liu, Zhexing; Zhang, Hui; Escolar, Maria L; Gilmore, John H; Gouttard, Sylvain; Fillard, Pierre; Maltbie, Eric; Gerig, Guido; Styner, Martin | NeuroImage | 2011 Apr 15 | 1577-86 | 21256236 |
| Benchmarking ontologies: bigger or better? | Yao, Lixia; Divoli, Anna; Mayzus, Ilya; Evans, James A; Rzhetsky, Andrey | PLoS computational biology | 2011 | e1001055 | 21249231 |
| The emerging role of electronic medical records in pharmacogenomics. | Wilke, R A; Xu, H; Denny, J C; Roden, D M; Krauss, R M; McCarty, C A; Davis, R L; Skaar, T; Lamba, J; Savova, G | Clinical pharmacology and therapeutics | 2011 Mar | 379-86 | 21248726 |
| A 4-channel 3 Tesla phased array receive coil for awake rhesus monkey fMRI and diffusion MRI experiments. | Khachaturian, Mark Haig | Journal of biomedical science and engineering. | 2010 Jan 01; | 21243106 | |
| Application of Metamorphic Testing to Supervised Classifiers. | Xie, Xiaoyuan; Ho, Joshua; Murphy, Christian; Kaiser, Gail; Xu, Baowen; Chen, Tsong Yueh | Proceedings / International Conference on Quality Software. International Conference on Quality Software | 2010 Jan 15 | 135-144 | 21243103 |
| Ontologies for clinical and translational research: Introduction. | Smith, Barry; Scheuermann, Richard H | Journal of biomedical informatics | 2011 Feb | 3-7 | 21241822 |
| The contribution of genes to cortical thickness and volume. | Joshi, Anand A; Lepore, Natasha; Joshi, Shantanu H; Lee, Agatha D; Barysheva, Marina; Stein, Jason L; McMahon, Katie L; Johnson, Kori; de Zubicaray, Greig I; Martin, Nicholas G; Wright, Margaret J; Toga, Arthur W; Thompson, Paul M | Neuroreport | 2011 Feb 16 | 101-5 | 21233781 |
| A CD133-related gene expression signature identifies an aggressive glioblastoma subtype with excessive mutations. | Yan, Xiaowei; Ma, Li; Yi, Danielle; Yoon, Jae-geun; Diercks, Alan; Foltz, Gregory; Price, Nathan D; Hood, Leroy E; Tian, Qiang | Proceedings of the National Academy of Sciences of the United States of America | 2011 Jan 25 | 1591-6 | 21220328 |
| Genetic basis of autoantibody positive and negative rheumatoid arthritis risk in a multi-ethnic cohort derived from electronic health records. | Kurreeman, Fina; Liao, Katherine; Chibnik, Lori; Hickey, Brendan; Stahl, Eli; Gainer, Vivian; Li, Gang; Bry, Lynn; Mahan, Scott; Ardlie, Kristin; Thomson, Brian; Szolovits, Peter; Churchill, Susanne; Murphy, Shawn N; Cai, Tianxi; Raychaudhuri, Soumya; Koh | American journal of human genetics | 2011 Jan 7 | 57-69 | 21211616 |
| Soft tissue response to mandibular advancement using 3D CBCT scanning. | Almeida, R C; Cevidanes, L H S; Carvalho, F A R; Motta, A T; Almeida, M A O; Styner, M; Turvey, T; Proffit, W R; Phillips, C | International journal of oral and maxillofacial surgery. | 2011 Apr; | 353-9 | 21208782 |
| A new metric for detecting change in slowly evolving brain tumors: validation in meningioma patients. | Pohl, Kilian M; Konukoglu, Ender; Novellas, Sebastian; Ayache, Nicholas; Fedorov, Andriy; Talos, Ion-Florin; Golby, Alexandra; Wells, William M; Kikinis, Ron; Black, Peter M | Neurosurgery | 2011 Mar | 225-33 | 21206318 |
| Towards BioDBcore: a community-defined information specification for biological databases. | Gaudet, Pascale; Bairoch, Amos; Field, Dawn; Sansone, Susanna-Assunta; Taylor, Chris; Attwood, Teresa K; Bateman, Alex; Blake, Judith A; Bult, Carol J; Cherry, J Michael; Chisholm, Rex L; Cochrane, Guy; Cook, Charles E; Eppig, Janan T; Galperin, Michael Y; Gentleman, Robert; Goble, Carole A; Gojobori, Takashi; Hancock, John M; Howe, Douglas G; Imanishi, Tadashi; Kelso, Janet; Landsman, David; Lewis, Suzanna E; Karsch Mizrachi, Ilene; Orchard, Sandra; Ouellette, B F Francis; Ranganathan, Shoba; Richardson, Lorna; Rocca-Serra, Philippe; Schofield, Paul N; Smedley, Damian; Southan, Christopher; Tan, Tin W; Tatusova, Tatiana; Whetzel, Patricia L; White, Owen; Yamasaki, Chisato; BioDBCore Working Group | Database : the journal of biological databases and curation. | 2011; | 21205783 | |
| Automatic Detection of Previously-Unseen Application States for Deployment Environment Testing and Analysis. | Murphy, Christian; Vaughan, Moses; Ilahi, Waseem; Kaiser, Gail | Proceedings of the ... International Workshop on Automation of Software Test. International Workshop on Automation of Software Test | 2010 | 16-23 | 21197140 |
| BDNF gene effects on brain circuitry replicated in 455 twins. | Chiang, Ming-Chang; Barysheva, Marina; Toga, Arthur W; Medland, Sarah E; Hansell, Narelle K; James, Michael R; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M | NeuroImage | 2011 Mar 15 | 448-54 | 21195196 |
| Computational modeling of growth: systemic and pulmonary hypertension in the heart. | Rausch, M K; Dam, A; Goktepe, S; Abilez, O J; Kuhl, E | Biomechanics and modeling in mechanobiology | 2011 Dec | 799-811 | 21188611 |
| Clinical application of SPHARM-PDM to quantify temporomandibular joint osteoarthritis. | Paniagua, Beatriz; Cevidanes, Lucia; Walker, David; Zhu, Hongtu; Guo, Ruixin; Styner, Martin | Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society | 2011 Jul | 345-52 | 21185694 |
| Statistical method for revealing form-function relations in biological networks. | Mugler, Andrew; Grinshpun, Boris; Franks, Riley; Wiggins, Chris H | Proceedings of the National Academy of Sciences of the United States of America | 2011 Jan 11 | 446-51 | 21183719 |
| Calculation of local water densities in biological systems: a comparison of molecular dynamics simulations and the 3D-RISM-KH molecular theory of solvation. | Stumpe, Martin C; Blinov, Nikolay; Wishart, David; Kovalenko, Andriy; Pande, Vijay S | The journal of physical chemistry. B | 2011 Jan 20 | 319-28 | 21174421 |
| Nonparametric clustering for studying RNA conformations. | Le Faucheur, Xavier; Hershkovits, Eli; Tannenbaum, Rina; Tannenbaum, Allen | IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM | 2011 Nov-Dec | 1604-19 | 21173460 |
| Discovering Structural Regularity in 3D Geometry. | Pauly, Mark; Mitra, Niloy J; Wallner, Johannes; Pottmann, Helmut; Guibas, Leonidas J | ACM transactions on graphics. | 2008 Aug 1; | 21170292 | |
| Minimal formulation of joint motion for biomechanisms. | Seth, Ajay; Sherman, Michael; Eastman, Peter; Delp, Scott | Nonlinear Dynamics | 2010 Oct 1 | 291-303 | 21170173 |
| Deformable spanners and applications. | Gao, Jie; Guibas, Leonidas J; Nguyen, An | Computational geometry : theory and applications | 2006 Aug 1 | 2-19 | 21165161 |
| Meshless Animation of Fracturing Solids. | Pauly, Mark; Keiser, Richard; Adams, Bart; Dutre, Philip; Gross, Markus; Guibas, Leonidas J | ACM transactions on graphics | 2005 Jul 1 | 957-964 | 21165160 |
| A package for exact kinetic data structures and sweepline algorithms. | Russel, Daniel; Karavelas, Menelaos I; Guibas, Leonidas J | Computational geometry : theory and applications | 2007 Sep 1 | 111-127 | 21165159 |
| Outcome quantification using SPHARM-PDM toolbox in orthognathic surgery. | Paniagua, Beatriz; Cevidanes, Lucia; Zhu, Hongtu; Styner, Martin | International journal of computer assisted radiology and surgery | 2011 Sep | 617-26 | 21161693 |
| Potential for electronic health records and online social networking to redefine medical research. | Pearson, John F; Brownstein, Catherine A; Brownstein, John S | Clinical chemistry | 2011 Feb | 196-204 | 21159898 |
| CUDA optimization strategies for compute- and memory-bound neuroimaging algorithms. | Lee, Daren; Dinov, Ivo; Dong, Bin; Gutman, Boris; Yanovsky, Igor; Toga, Arthur W | Computer methods and programs in biomedicine | 2012 Jun | 175-87 | 21159404 |
| Foundations for a realist ontology of mental disease. | Ceusters, Werner; Smith, Barry | Journal of biomedical semantics. | 2010; | 10 | 21143905 |
| NGSQC: cross-platform quality analysis pipeline for deep sequencing data. | Dai, Manhong; Thompson, Robert C; Maher, Christopher; Contreras-Galindo, Rafael; Kaplan, Mark H; Markovitz, David M; Omenn, Gil; Meng, Fan | BMC genomics | 2010 | S7 | 21143816 |
| Cross-domain neurobiology data integration and exploration. | Xuan, Weijian; Dai, Manhong; Buckner, Josh; Mirel, Barbara; Song, Jean; Athey, Brian; Watson, Stanley J; Meng, Fan | BMC genomics | 2010 | S6 | 21143788 |
| Development of stereotactic mass spectrometry for brain tumor surgery. | Agar, Nathalie Y R; Golby, Alexandra J; Ligon, Keith L; Norton, Isaiah; Mohan, Vandana; Wiseman, Justin M; Tannenbaum, Allen; Jolesz, Ferenc A | Neurosurgery | 2011 Feb | 280-89; discussion 290 | 21135749 |
| Interactive diffusion tensor tractography visualization for neurosurgical planning. | Golby, Alexandra J; Kindlmann, Gordon; Norton, Isaiah; Yarmarkovich, Alexander; Pieper, Steven; Kikinis, Ron | Neurosurgery | 2011 Feb | 496-505 | 21135713 |
| Resting-state fMRI can reliably map neural networks in children. | Thomason, Moriah E; Dennis, Emily L; Joshi, Anand A; Joshi, Shantanu H; Dinov, Ivo D; Chang, Catie; Henry, Melissa L; Johnson, Rebecca F; Thompson, Paul M; Toga, Arthur W; Glover, Gary H; Van Horn, John D; Gotlib, Ian H | NeuroImage | 2011 Mar 1 | 165-75 | 21134471 |
| Modeling Spatial Patterns of Shapes. | Srivastava, Anuj; Liu, Wei; Joshi, Shantanu H | Proceedings / ICIP ... International Conference on Image Processing. | 2008 Dec 12; | 1144-1147 | 21132063 |
| An integrated approach to uncover drivers of cancer. | Akavia, Uri David; Litvin, Oren; Kim, Jessica; Sanchez-Garcia, Felix; Kotliar, Dylan; Causton, Helen C; Pochanard, Panisa; Mozes, Eyal; Garraway, Levi A; Pe'er, Dana | Cell | 2010 Dec 10 | 1005-17 | 21129771 |
| Transforming growth factor-beta signaling pathway in patients with Kawasaki disease. | Shimizu, Chisato; Jain, Sonia; Davila, Sonia; Hibberd, Martin L; Lin, Kevin O; Molkara, Delaram; Frazer, Jeffrey R; Sun, Shelly; Baker, Annette L; Newburger, Jane W; Rowley, Anne H; Shulman, Stanford T; Davila, Sonia; Burgner, David; Breunis, Willemijn B; | Circulation. Cardiovascular genetics | 2011 Feb | 16-25 | 21127203 |
| GLay: community structure analysis of biological networks. | Su, Gang; Kuchinsky, Allan; Morris, John H; States, David J; Meng, Fan | Bioinformatics (Oxford, England) | 2010 Dec 15 | 3135-7 | 21123224 |
| Anisotropy of transcallosal motor fibres indicates functional impairment in children with periventricular leukomalacia. | Koerte, Inga; Pelavin, Paula; Kirmess, Berit; Fuchs, Teresa; Berweck, Steffen; Laubender, Ruediger P; Borggraefe, Ingo; Schroeder, Sebastian; Danek, Adrian; Rummeny, Claudia; Reiser, Maximilian; Kubicki, Marek; Shenton, Martha E; Ertl-Wagner, Birgit; Hein | Developmental medicine and child neurology | 2011 Feb | 179-86 | 21121906 |
| Structural insights into pre-translocation ribosome motions. | Flores, Samuel Coulbourn; Altman, Russ | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 2011 | 205-11 | 21121048 |
| Molecular dynamics simulations of the full triple helical region of collagen type I provide an atomic scale view of the protein's regional heterogeneity. | Bodian, Dale L; Radmer, Randall J; Holbert, Sean; Klein, Teri E | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 2011 | 193-204 | 21121047 |
| Tubular surface segmentation for extracting anatomical structures from medical imagery. | Mohan, Vandana; Sundaramoorthi, Ganesh; Tannenbaum, Allen | IEEE transactions on medical imaging | 2010 Dec | 1945-58 | 21118754 |
| MRI RESOLUTION ENHANCEMENT USING TOTAL VARIATION REGULARIZATION. | Joshi, Shantanu H; Marquina, Antonio; Osher, Stanley J; Dinov, Ivo; Van Horn, John D; Toga, Arthur W | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2009 Aug 7 | 161-164 | 21113426 |
| Edge-Enhanced Image Reconstruction Using (TV) Total Variation and Bregman Refinement. | Joshi, Shantanu H; Marquina, Antonio; Osher, Stanley J; Dinov, Ivo; Van Horn, John D; Toga, Arthur W | Lecture notes in computer science | 2009 Jan 1 | 389-400 | 21113387 |
| Apolipoprotein E genotype is associated with temporal and hippocampal atrophy rates in healthy elderly adults: a tensor-based morphometry study. | Lu, Po H; Thompson, Paul M; Leow, Alex; Lee, Grace J; Lee, Agatha; Yanovsky, Igor; Parikshak, Neelroop; Khoo, Theresa; Wu, Stephanie; Geschwind, Daniel; Bartzokis, George | Journal of Alzheimer's disease : JAD | 2011 | 433-42 | 21098974 |
| A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder. | McEachin, Richard C; Chen, Haiming; Sartor, Maureen A; Saccone, Scott F; Keller, Benjamin J; Prossin, Alan R; Cavalcoli, James D; McInnis, Melvin G | BMC systems biology | 2010 | 158 | 21092101 |
| GSearcher: agile attribute querying for biological networks. | Su, Gang; Athey, Brian D; Meng, Fan | Bioinformatics (Oxford, England) | 2010 Dec 15 | 3138-9 | 21088028 |
| Intrinsic Bayesian Active Contours for Extraction of Object Boundaries in Images. | Joshi, Shantanu H; Srivastava, Anuj | International journal of computer vision | 2009 Mar 1 | 331-355 | 21076692 |
| Diffeomorphic Sulcal Shape Analysis for Cortical Surface Registration. | Joshi, Shantanu H; Cabeen, Ryan P; Joshi, Anand A; Woods, Roger P; Narr, Katherine L; Toga, Arthur W | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 2010 Jun 1 | 475-482 | 21076690 |
| The generation of tetrahedral mesh models for neuroanatomical MRI. | Lederman, Carl; Joshi, Anand; Dinov, Ivo; Vese, Luminita; Toga, Arthur; Van Horn, John Darrell | NeuroImage | 2011 Mar 1 | 153-64 | 21073968 |
| POSTURE MATCHING AND ELASTIC REGISTRATION OF A MOUSE ATLAS TO SURFACE TOPOGRAPHY RANGE DATA. | Joshi, A A; Chaudhari, A J; Li, Changqing; Shattuck, D W; Dutta, J; Leahy, R M; Toga, A W | Proceedings. IEEE International Symposium on Biomedical Imaging. | 2009 Aug 7; | 21072317 | |
| Effectiveness of lexico-syntactic pattern matching for ontology enrichment with clinical documents. | Liu, K; Chapman, W W; Savova, G; Chute, C G; Sioutos, N; Crowley, R S | Methods of information in medicine. | 2011; | 21057720 | |
| An evolutionary approach to realism-based adverse event representations. | Ceusters, W; Capolupo, M; de Moor, G; Devlies, J; Smith, B | Methods of information in medicine | 2011 | 62-73 | 21057717 |
| A Computational Model of Multidimensional Shape. | Liu, Xiuwen; Shi, Yonggang; Dinov, Ivo; Mio, Washington | International journal of computer vision | 2010 Aug 1 | 69-83 | 21057668 |
| The association of plasma resistin with dietary sodium manipulation, the renin-angiotensin-aldosterone system, and 25-hydroxyvitamin D3 in human hypertension. | Vaidya, Anand; Pojoga, Luminita; Underwood, Patricia C; Forman, John P; Hopkins, Paul N; Williams, Gordon H; Williams, Jonathan S | Clinical endocrinology | 2011 Mar | 294-9 | 21050256 |
| Recent progress in automatically extracting information from the pharmacogenomic literature. | Garten, Yael; Coulet, Adrien; Altman, Russ B | Pharmacogenomics | 2010 Oct | 1467-89 | 21047206 |
| Experimental approaches to the human renal transcriptome. | Hodgin, Jeffrey B; Cohen, Clemens D | Seminars in nephrology | 2010 Sep | 455-67 | 21044757 |
| Towards a framework for developing semantic relatedness reference standards. | Pakhomov, Serguei V S; Pedersen, Ted; McInnes, Bridget; Melton, Genevieve B; Ruggieri, Alexander; Chute, Christopher G | Journal of biomedical informatics. | 2011 Apr; | 21044697 | |
| Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models. | Yang, Xinan; Lee, Younghee; Huang, Yong; Chen, James L; Xing, Rosie H; Lussier, Yves A | BMC bioinformatics | 2010 | S11 | 21044358 |
| Abnormal brain activation during working memory in children with prenatal exposure to drugs of abuse: the effects of methamphetamine, alcohol, and polydrug exposure. | Roussotte, Florence F; Bramen, Jennifer E; Nunez, S Christopher; Quandt, Lorna C; Smith, Lynne; O'Connor, Mary J; Bookheimer, Susan Y; Sowell, Elizabeth R | NeuroImage | 2011 Feb 14 | 3067-75 | 21040792 |
| CONFU: Configuration Fuzzing Testing Framework for Software Vulnerability Detection. | Dai, Huning; Murphy, Christian; Kaiser, Gail | International journal of secure software engineering (Print) | 2010 | 41-55 | 21037923 |
| Thickness of the human cerebral cortex is associated with metrics of cerebrovascular health in a normative sample of community dwelling older adults. | Leritz, Elizabeth C; Salat, David H; Williams, Victoria J; Schnyer, David M; Rudolph, James L; Lipsitz, Lewis; Fischl, Bruce; McGlinchey, Regina E; Milberg, William P | NeuroImage | 2011 Feb 14 | 2659-71 | 21035552 |
| Quantifying evolvability in small biological networks. | Mugler, A; Ziv, E; Nemenman, I; Wiggins, C H | IET systems biology | 2009 Sep | 379-87 | 21028928 |
| Literature-based discovery of diabetes- and ROS-related targets. | Hur, Junguk; Sullivan, Kelli A; Schuyler, Adam D; Hong, Yu; Pande, Manjusha; States, David J; Jagadish, H V; Feldman, Eva L | BMC medical genomics | 2010 | 49 | 20979611 |
| Structural, metabolic, and functional brain abnormalities as a result of prenatal exposure to drugs of abuse: evidence from neuroimaging. | Roussotte, Florence; Soderberg, Lindsay; Sowell, Elizabeth | Neuropsychology review | 2010 Dec | 376-97 | 20978945 |
| Adsorption of Block Copolymers from Selective Solvents on Curved Surfaces. | Hershkovits, Eli; Tannenbaum, Allen; Tannenbaum, Rina | Macromolecules | 2008 May 13 | 3190-3198 | 20976029 |
| Non-bulk-like solvent behavior in the ribosome exit tunnel. | Lucent, Del; Snow, Christopher D; Aitken, Colin Echeverria; Pande, Vijay S | PLoS computational biology | 2010 | e1000963 | 20975935 |
| Exprtarget: an integrative approach to predicting human microRNA targets. | Gamazon, Eric R; Im, Hae-Kyung; Duan, Shiwei; Lussier, Yves A; Cox, Nancy J; Dolan, M Eileen; Zhang, Wei | PloS one | 2010 | e13534 | 20975837 |
| Visual exploration of high dimensional scalar functions. | Gerber, Samuel; Bremer, Peer-Timo; Pascucci, Valerio; Whitaker, Ross | IEEE transactions on visualization and computer graphics | 2010 Nov-Dec | 1271-80 | 20975167 |
| Hippocampal degeneration is associated with temporal and limbic gray matter/white matter tissue contrast in Alzheimer's disease. | Salat, D H; Chen, J J; van der Kouwe, A J; Greve, D N; Fischl, B; Rosas, H D | NeuroImage | 2011 Feb 1 | 1795-802 | 20965261 |
| The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. | Tenenbaum, Jessica D; Whetzel, Patricia L; Anderson, Kent; Borromeo, Charles D; Dinov, Ivo D; Gabriel, Davera; Kirschner, Beth; Mirel, Barbara; Morris, Tim; Noy, Natasha; Nyulas, Csongor; Rubenson, David; Saxman, Paul R; Singh, Harpreet; Whelan, Nancy; Wr | Journal of biomedical informatics | 2011 Feb | 137-45 | 20955817 |
| Structural neuroimaging in schizophrenia: from methods to insights to treatments. | Shenton, Martha E; Whitford, Thomas J; Kubicki, Marek | Dialogues in clinical neuroscience | 2010 | 317-32 | 20954428 |
| Differences in patellofemoral kinematics between weight-bearing and non-weight-bearing conditions in patients with patellofemoral pain. | Draper, Christine E; Besier, Thor F; Fredericson, Michael; Santos, Juan M; Beaupre, Gary S; Delp, Scott L; Gold, Garry E | Journal of orthopaedic research : official publication of the Orthopaedic Research Society | 2011 Mar | 312-7 | 20949442 |
| The Protein Ontology: a structured representation of protein forms and complexes. | Natale, Darren A; Arighi, Cecilia N; Barker, Winona C; Blake, Judith A; Bult, Carol J; Caudy, Michael; Drabkin, Harold J; D'Eustachio, Peter; Evsikov, Alexei V; Huang, Hongzhan; Nchoutmboube, Jules; Roberts, Natalia V; Smith, Barry; Zhang, Jian; Wu, Cathy H | Nucleic acids research. | 2011 Jan; | 20935045 | |
| Regional gray matter correlates of perceived emotional intelligence. | Koven, Nancy S; Roth, Robert M; Garlinghouse, Matthew A; Flashman, Laura A; Saykin, Andrew J | Social cognitive and affective neuroscience | 2011 Oct | 582-90 | 20934987 |
| The link between callosal thickness and intelligence in healthy children and adolescents. | Luders, Eileen; Thompson, Paul M; Narr, Katherine L; Zamanyan, Alen; Chou, Yi-Yu; Gutman, Boris; Dinov, Ivo D; Toga, Arthur W | NeuroImage | 2011 Feb 1 | 1823-30 | 20932920 |
| Phase II study of neoadjuvant bevacizumab and radiotherapy for resectable soft tissue sarcomas. | Yoon, Sam S; Duda, Dan G; Karl, Daniel L; Kim, Tae-Min; Kambadakone, Avinash R; Chen, Yen-Lin; Rothrock, Courtney; Rosenberg, Andrew E; Nielsen, G Petur; Kirsch, David G; Choy, Edwin; Harmon, David C; Hornicek, Francis J; Dreyfuss, Jonathan; Ancukiewicz, | International journal of radiation oncology, biology, physics | 2011 Nov 15 | 1081-90 | 20932656 |
| Neuroimaging study designs, computational analyses and data provenance using the LONI pipeline. | Dinov, Ivo; Lozev, Kamen; Petrosyan, Petros; Liu, Zhizhong; Eggert, Paul; Pierce, Jonathan; Zamanyan, Alen; Chakrapani, Shruthi; Van Horn, John; Parker, D Stott; Magsipoc, Rico; Leung, Kelvin; Gutman, Boris; Woods, Roger; Toga, Arthur | PloS one | 2010 | 20927408 | |
| A web-based brain atlas of the vervet monkey, Chlorocebus aethiops. | Woods, Roger P; Fears, Scott C; Jorgensen, Matthew J; Fairbanks, Lynn A; Toga, Arthur W; Freimer, Nelson B | NeuroImage | 2011 Feb 1 | 1872-80 | 20923706 |
| A potential role for intragenic miRNAs on their hosts' interactome. | Hinske, Ludwig Christian G; Galante, Pedro A F; Kuo, Winston P; Ohno-Machado, Lucila | BMC genomics | 2010 | 533 | 20920310 |
| The rate of the molecular clock and the cost of gratuitous protein synthesis. | Plata, German; Gottesman, Max E; Vitkup, Dennis | Genome biology | 2010 | R98 | 20920270 |
| Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. | Filion, Guillaume J; van Bemmel, Joke G; Braunschweig, Ulrich; Talhout, Wendy; Kind, Jop; Ward, Lucas D; Brugman, Wim; de Castro, Ines J; Kerkhoven, Ron M; Bussemaker, Harmen J; van Steensel, Bas | Cell | 2010 Oct 15 | 212-24 | 20888037 |
| Topographical relationships between arcuate fasciculus connectivity and cortical thickness. | Phillips, Owen R; Clark, Kristi A; Woods, Roger P; Subotnik, Kenneth L; Asarnow, Robert F; Nuechterlein, Keith H; Toga, Arthur W; Narr, Katherine L | Human brain mapping | 2011 Nov | 1788-801 | 20886580 |
| DigiWarp: a method for deformable mouse atlas warping to surface topographic data. | Joshi, Anand A; Chaudhari, Abhijit J; Li, Changqing; Dutta, Joyita; Cherry, Simon R; Shattuck, David W; Toga, Arthur W; Leahy, Richard M | Physics in medicine and biology | 2010 Oct 21 | 6197-214 | 20885019 |
| Ontology and the future of dental research informatics. | Smith, Barry; Goldberg, Louis J; Ruttenberg, Alan; Glick, Michael | Journal of the American Dental Association (1939). | 2010 Oct; | 1173-5 | 20884915 |
| Morphology-guided graph search for untangling objects: C. elegans analysis. | Raviv, Tammy Riklin; Ljosa, V; Conery, A L; Ausubel, F M; Carpenter, A E; Golland, P; Wahlby, C | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 634-41 | 20879454 |
| Agreement-based semi-supervised learning for skull stripping. | Iglesias, Juan Eugenio; Liu, Cheng-Yi; Thompson, Paul; Tu, Zhuowen | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 147-54 | 20879394 |
| Synthetic MRI signal standardization: application to multi-atlas analysis. | Iglesias, Juan Eugenio; Dinov, Ivo; Singh, Jaskaran; Tong, Gregory; Tu, Zhuowen | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 81-8 | 20879386 |
| Automated sulci identification via intrinsic modeling of cortical anatomy. | Shi, Yonggang; Sun, Bo; Lai, Rongjie; Dinov, Ivo; Toga, Arthur W | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 49-56 | 20879382 |
| Image registration driven by combined probabilistic and geometric descriptors. | Ha, Linh; Prastawa, Marcel; Gerig, Guido; Gilmore, John H; Silva, Claudio T; Joshi, Sarang | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2010; | 602-9 | 20879365 |
| Summarizing and visualizing uncertainty in non-rigid registration. | Risholm, Petter; Pieper, Steve; Samset, Eigil; Wells 3rd, William M | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 554-61 | 20879359 |
| Shape-based diffeomorphic registration on hippocampal surfaces using Beltrami holomorphic flow. | Lui, Lok Ming; Wong, Tsz Wai; Thompson, Paul; Chan, Tony; Gu, Xianfeng; Yau, Shing-Tung | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 323-30 | 20879331 |
| A geometry-based particle filtering approach to white matter tractography. | Savadjiev, Peter; Rathi, Yogesh; Malcolm, James G; Shenton, Martha E; Westin, Carl-Fredrik | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 233-40 | 20879320 |
| A generative model for brain tumor segmentation in multi-modal images. | Menze, Bjoern H; Van Leemput, Koen; Lashkari, Danial; Weber, Marc-Andre; Ayache, Nicholas; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 151-9 | 20879310 |
| Multivariate varying coefficient models for DTI tract statistics. | Zhu, Hongtu; Styner, Martin; Li, Yimei; Kong, Linglong; Shi, Yundi; Lin, Weili; Coe, Christopher; Gilmore, John H | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 690-7 | 20879291 |
| Biomarkers for identifying first-episode schizophrenia patients using diffusion weighted imaging. | Rathi, Yogesh; Malcolm, James; Michailovich, Oleg; Goldstein, Jill; Seidman, Larry; McCarley, Robert W; Westin, Carl-Fredrik; Shenton, Martha E | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2010; | 657-65 | 20879287 |
| Cortical sulcal atlas construction using a diffeomorphic mapping approach. | Joshi, Shantanu H; Cabeen, Ryan P; Sun, Bo; Joshi, Anand A; Gutman, Boris; Zamanyan, Alen; Chakrapani, Shruthi; Dinov, Ivo; Woods, Roger P; Toga, Arthur W | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. | 2010; | 20879251 | |
| Joint generative model for fMRI/DWI and its application to population studies. | Venkataraman, Archana; Rathi, Yogesh; Kubicki, Marek; Westin, Carl-Fredrik; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2010 | 191-9 | 20879231 |
| A role for coding functional variants in HNF4A in type 2 diabetes susceptibility. | Jafar-Mohammadi, B; Groves, C J; Gjesing, A P; Herrera, B M; Winckler, W; Stringham, H M; Morris, A P; Lauritzen, T; Doney, A S F; Morris, A D; Weedon, M N; Swift, A J; Kuusisto, J; Laakso, M; Altshuler, D; Hattersley, A T; Collins, F S; Boehnke, M; Hanse | Diabetologia | 2011 Jan | 111-9 | 20878384 |
| Analysis of randomized comparative clinical trial data for personalized treatment selections. | Cai, Tianxi; Tian, Lu; Wong, Peggy H; Wei, L J | Biostatistics (Oxford, England) | 2011 Apr | 270-82 | 20876663 |
| RAPID detection of gene-gene interactions in genome-wide association studies. | Brinza, Dumitru; Schultz, Matthew; Tesler, Glenn; Bafna, Vineet | Bioinformatics (Oxford, England) | 2010 Nov 15 | 2856-62 | 20871107 |
| Identifying the genetic determinants of transcription factor activity. | Lee, Eunjee; Bussemaker, Harmen J | Molecular systems biology | 2010 Sep 21 | 412 | 20865005 |
| A molecular profile of focal segmental glomerulosclerosis from formalin-fixed, paraffin-embedded tissue. | Hodgin, Jeffrey B; Borczuk, Alain C; Nasr, Samih H; Markowitz, Glen S; Nair, Viji; Martini, Sebastian; Eichinger, Felix; Vining, Courtenay; Berthier, Celine C; Kretzler, Matthias; D'Agati, Vivette D | The American journal of pathology | 2010 Oct | 1674-86 | 20847290 |
| A unified framework for biomedical terminologies and ontologies. | Ceusters, Werner; Smith, Barry | Studies in health technology and informatics | 2010 | 1050-4 | 20841844 |
| Extracting medication information from French clinical texts. | Deleger, Louise; Grouin, Cyril; Zweigenbaum, Pierre | Studies in health technology and informatics | 2010 | 949-53 | 20841824 |
| Phosphoproteomics. | Ozlu, Nurhan; Akten, Bikem; Timm, Wiebke; Haseley, Nathan; Steen, Hanno; Steen, Judith A J | Wiley interdisciplinary reviews. Systems biology and medicine | 2010 May-Jun | 255-76 | 20836028 |
| Effects of ApoE4 and maternal history of dementia on hippocampal atrophy. | Andrawis, John P; Hwang, Kristy S; Green, Amity E; Kotlerman, Jenny; Elashoff, David; Morra, Jonathan H; Cummings, Jeffrey L; Toga, Arthur W; Thompson, Paul M; Apostolova, Liana G | Neurobiology of aging | 2012 May | 856-66 | 20833446 |
| Hierarchical evolution of the bacterial sporulation network. | de Hoon, Michiel J L; Eichenberger, Patrick; Vitkup, Dennis | Current biology : CB | 2010 Sep 14 | R735-45 | 20833318 |
| The BioPAX community standard for pathway data sharing. | Demir, Emek; Cary, Michael P; Paley, Suzanne; Fukuda, Ken; Lemer, Christian; Vastrik, Imre; Wu, Guanming; D'Eustachio, Peter; Schaefer, Carl; Luciano, Joanne; Schacherer, Frank; Martinez-Flores, Irma; Hu, Zhenjun; Jimenez-Jacinto, Veronica; Joshi-Tope, Ge | Nature biotechnology. | 2010 Sep; | 935-42 | 20829833 |
| Allelic selection of amplicons in glioblastoma revealed by combining somatic and germline analysis. | LaFramboise, Thomas; Dewal, Ninad; Wilkins, Katherine; Pe'er, Itsik; Freedman, Matthew L | PLoS genetics | 2010 Sep | 20824129 | |
| Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network. | Plata, German; Hsiao, Tzu-Lin; Olszewski, Kellen L; Llinas, Manuel; Vitkup, Dennis | Molecular systems biology | 2010 Sep 7 | 408 | 20823846 |
| Gray matter volume reduction in rostral middle frontal gyrus in patients with chronic schizophrenia. | Kikinis, Z; Fallon, J H; Niznikiewicz, M; Nestor, P; Davidson, C; Bobrow, L; Pelavin, P E; Fischl, B; Yendiki, A; McCarley, R W; Kikinis, R; Kubicki, M; Shenton, M E | Schizophrenia research | 2010 Nov | 153-9 | 20822884 |
| The genetics of insulin resistance: Where's Waldo? | Watanabe, Richard M | Current diabetes reports | 2010 Dec | 476-84 | 20820957 |
| Lancet: a high precision medication event extraction system for clinical text. | Li, Zuofeng; Liu, Feifan; Antieau, Lamont; Cao, Yonggang; Yu, Hong | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 563-7 | 20819865 |
| Textractor: a hybrid system for medications and reason for their prescription extraction from clinical text documents. | Meystre, Stephane M; Thibault, Julien; Shen, Shuying; Hurdle, John F; South, Brett R | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 559-62 | 20819864 |
| Extracting medical information from narrative patient records: the case of medication-related information. | Deleger, Louise; Grouin, Cyril; Zweigenbaum, Pierre | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 555-8 | 20819863 |
| Automatic extraction of medication information from medical discharge summaries. | Yang, Hui | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 545-8 | 20819861 |
| Improving textual medication extraction using combined conditional random fields and rule-based systems. | Tikk, Domonkos; Solt, Illes | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 540-4 | 20819860 |
| Extracting Rx information from clinical narrative. | Mork, James G; Bodenreider, Olivier; Demner-Fushman, Dina; Dogan, Rezarta Islamaj; Lang, Francois-Michel; Lu, Zhiyong; Neveol, Aurelie; Peters, Lee; Shooshan, Sonya E; Aronson, Alan R | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 536-9 | 20819859 |
| Medication information extraction with linguistic pattern matching and semantic rules. | Spasic, Irena; Sarafraz, Farzaneh; Keane, John A; Nenadic, Goran | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 532-5 | 20819858 |
| Integrating existing natural language processing tools for medication extraction from discharge summaries. | Doan, Son; Bastarache, Lisa; Klimkowski, Sergio; Denny, Joshua C; Xu, Hua | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 528-31 | 20819857 |
| High accuracy information extraction of medication information from clinical notes: 2009 i2b2 medication extraction challenge. | Patrick, Jon; Li, Min | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 524-7 | 20819856 |
| Community annotation experiment for ground truth generation for the i2b2 medication challenge. | Uzuner, Ozlem; Solti, Imre; Xia, Fei; Cadag, Eithon | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 519-23 | 20819855 |
| Extracting medication information from clinical text. | Uzuner, Ozlem; Solti, Imre; Cadag, Eithon | Journal of the American Medical Informatics Association : JAMIA | 2010 Sep-Oct | 514-8 | 20819854 |
| Multimodality non-rigid image registration for planning, targeting and monitoring during CT-guided percutaneous liver tumor cryoablation. | Elhawary, Haytham; Oguro, Sota; Tuncali, Kemal; Morrison, Paul R; Tatli, Servet; Shyn, Paul B; Silverman, Stuart G; Hata, Nobuhiko | Academic radiology | 2010 Nov | 1334-44 | 20817574 |
| The contributions of disease and genetic factors towards regional cortical thinning in schizophrenia: the UCLA family study. | Yang, Yaling; Nuechterlein, Keith H; Phillips, Owen; Hamilton, Liberty S; Subotnik, Kenneth L; Asarnow, Robert F; Toga, Arthur W; Narr, Katherine L | Schizophrenia research | 2010 Nov | 116-25 | 20817413 |
| Three-dimensional surgical simulation. | Cevidanes, Lucia H C; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael | American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics. | 2010 Sep; | 20816308 | |
| Nonparametric Mixture Models for Supervised Image Parcellation. | Sabuncu, Mert R; Yeo, B T Thomas; Van Leemput, Koen; Fischl, Bruce; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2009 Sep 1 | 301-313 | 20814584 |
| A mechanistic model of PCR for accurate quantification of quantitative PCR data. | Boggy, Gregory J; Woolf, Peter J | PloS one | 2010 | e12355 | 20814578 |
| Filtered multitensor tractography. | Malcolm, James G; Shenton, Martha E; Rathi, Yogesh | IEEE transactions on medical imaging | 2010 Sep | 1664-75 | 20805043 |
| HARDI DATA DENOISING USING VECTORIAL TOTAL VARIATION AND LOGARITHMIC BARRIER. | Kim, Yunho; Thompson, Paul M; Vese, Luminita A | Inverse problems and imaging (Springfield, Mo.) | 2010 May 1 | 273-310 | 20802839 |
| RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. | Huang, Xuhui; Wang, Dong; Weiss, Dahlia R; Bushnell, David A; Kornberg, Roger D; Levitt, Michael | Proceedings of the National Academy of Sciences of the United States of America | 2010 Sep 7 | 15745-50 | 20798057 |
| A nonrigid kernel-based framework for 2D-3D pose estimation and 2D image segmentation. | Sandhu, Romeil; Dambreville, Samuel; Yezzi, Anthony; Tannenbaum, Allen | IEEE transactions on pattern analysis and machine intelligence | 2011 Jun | 1098-115 | 20733218 |
| Auto-context and its application to high-level vision tasks and 3D brain image segmentation. | Tu, Zhuowen; Bai, Xiang | IEEE transactions on pattern analysis and machine intelligence | 2010 Oct | 1744-57 | 20724753 |
| Using text to build semantic networks for pharmacogenomics. | Coulet, Adrien; Shah, Nigam H; Garten, Yael; Musen, Mark; Altman, Russ B | Journal of biomedical informatics | 2010 Dec | 1009-19 | 20723615 |
| The development of the corpus callosum in the healthy human brain. | Luders, Eileen; Thompson, Paul M; Toga, Arthur W | The Journal of neuroscience : the official journal of the Society for Neuroscience | 2010 Aug 18 | 10985-90 | 20720105 |
| Optimization of Landmark Selection for Cortical Surface Registration. | Joshi, Anand; Pantazis, Dimitrios; Damasio, Hanna; Shattuck, David; Li, Quanzheng; Leahy, Richard | Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition | 2009 Jun 1 | 699-706 | 20717476 |
| The effects of physical activity, education, and body mass index on the aging brain. | Ho, April J; Raji, Cyrus A; Becker, James T; Lopez, Oscar L; Kuller, Lewis H; Hua, Xue; Dinov, Ivo D; Stein, Jason L; Rosano, Caterina; Toga, Arthur W; Thompson, Paul M | Human brain mapping | 2011 Sep | 1371-82 | 20715081 |
| A systems biology approach identifies inflammatory abnormalities between mouse strains prior to development of metabolic disease. | Mori, Marcelo A; Liu, Manway; Bezy, Olivier; Almind, Katrine; Shapiro, Hagit; Kasif, Simon; Kahn, C Ronald | Diabetes | 2010 Nov | 2960-71 | 20713682 |
| Puberty influences medial temporal lobe and cortical gray matter maturation differently in boys than girls matched for sexual maturity. | Bramen, Jennifer E; Hranilovich, Jennifer A; Dahl, Ronald E; Forbes, Erika E; Chen, Jessica; Toga, Arthur W; Dinov, Ivo D; Worthman, Carol M; Sowell, Elizabeth R | Cerebral cortex (New York, N.Y. : 1991) | 2011 Mar | 636-46 | 20713504 |
| Detecting stable distributed patterns of brain activation using Gini contrast. | Langs, Georg; Menze, Bjoern H; Lashkari, Danial; Golland, Polina | NeuroImage | 2011 May 15 | 497-507 | 20709176 |
| Quantitative in vivo evidence for broad regional gradients in the timing of white matter maturation during adolescence. | Colby, John B; Van Horn, John D; Sowell, Elizabeth R | NeuroImage | 2011 Jan 1 | 25-31 | 20708693 |
| Muscle contributions to propulsion and support during running. | Hamner, Samuel R; Seth, Ajay; Delp, Scott L | Journal of biomechanics | 2010 Oct 19 | 2709-16 | 20691972 |
| Age-related changes in the corpus callosum in early-onset bipolar disorder assessed using volumetric and cross-sectional measurements. | Lopez-Larson, Melissa; Breeze, Janis L; Kennedy, David N; Hodge, Steven M; Tang, Lena; Moore, Constance; Giuliano, Anthony J; Makris, Nikos; Caviness, Verne S; Frazier, Jean A | Brain imaging and behavior | 2010 Dec | 220-31 | 20686873 |
| Nonclinical obsessive-compulsive symptoms and executive functions in schizophrenia. | Kumbhani, Sheba R; Roth, Robert M; Kruck, Carrie L; Flashman, Laura A; McAllister, Thomas W | The Journal of neuropsychiatry and clinical neurosciences | 2010 | 304-12 | 20686137 |
| Tractography segmentation using a hierarchical Dirichlet processes mixture model. | Wang, Xiaogang; Grimson, W Eric L; Westin, Carl-Fredrik | NeuroImage | 2011 Jan 1 | 290-302 | 20678578 |
| An IR-aided machine learning framework for the BioCreative II.5 Challenge. | Cao, Yonggang; Li, Zuofeng; Liu, Feifan; Agarwal, Shashank; Zhang, Qing; Yu, Hong | IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM | 2010 Jul-Sep | 454-61 | 20671317 |
| Turning limited experimental information into 3D models of RNA. | Flores, Samuel Coulbourn; Altman, Russ B | RNA (New York, N.Y.) | 2010 Sep | 1769-78 | 20651028 |
| Ssecrett and NeuroTrace: interactive visualization and analysis tools for large-scale neuroscience data sets. | Jeong, Wan-Ki; Beyer, Johanna; Hadwiger, Markus; Blue, Rusty; Law, Charles; Vazquez-Reina, Amelio; Reid, R Clay; Lichtman, Jeff; Pfister, Hanspeter | IEEE computer graphics and applications | 2010 May-Jun | 58-70 | 20650718 |
| Semantic relations for problem-oriented medical records. | Uzuner, Ozlem; Mailoa, Jonathan; Ryan, Russell; Sibanda, Tawanda | Artificial intelligence in medicine | 2010 Oct | 63-73 | 20646918 |
| Three-dimensional hemodynamics in the human pulmonary arteries under resting and exercise conditions. | Tang, Beverly T; Fonte, Tim A; Chan, Frandics P; Tsao, Philip S; Feinstein, Jeffrey A; Taylor, Charles A | Annals of biomedical engineering | 2011 Jan | 347-58 | 20640512 |
| Strengths and limitations of formal ontologies in the biomedical domain. | Schulz, Stefan; Stenzhorn, Holger; Boeker, Martin; Smith, Barry | RECIIS, revista electronica de comunicacao, informacao & inovacao em saude | 2009 Mar 1 | 31-45 | 20640238 |
| The relationship between peroxisome proliferator-activated receptor-gamma and renin: a human genetics study. | Underwood, Patricia C; Sun, Bei; Williams, Jonathan S; Pojoga, Luminita H; Chamarthi, Bindu; Lasky-Su, Jessica; Raby, Benjamin A; Hopkins, Paul N; Jeunemaitre, Xavier; Brown, Nancy J; Adler, Gail K; Williams, Gordon H | The Journal of clinical endocrinology and metabolism | 2010 Sep | E75-9 | 20631015 |
| AUTOMATED COMPARISON OF PROTEIN SUBCELLULAR LOCATION PATTERNS BETWEEN IMAGES OF NORMAL AND CANCEROUS TISSUES. | Glory, Estelle; Newberg, Justin; Murphy, Robert F | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2008 | 304-307 | 20628549 |
| Association between fine particulate matter and diabetes prevalence in the U.S. | Pearson, John F; Bachireddy, Chethan; Shyamprasad, Sangameswaran; Goldfine, Allison B; Brownstein, John S | Diabetes care | 2010 Oct | 2196-201 | 20628090 |
| Editorial. | Rueckert, Daniel; Hawkes, David; Gerig, Guido; Yang, Guang-Zhong | Medical image analysis | 2010 Oct | 631-2 | 20627174 |
| Building a biomedical ontology recommender web service. | Jonquet, Clement; Musen, Mark A; Shah, Nigam H | Journal of biomedical semantics. | 2010; | S1 | 20626921 |
| Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks. | Ozgur, Arzucan; Xiang, Zuoshuang; Radev, Dragomir R; He, Yongqun | Journal of biomedicine & biotechnology | 2010 | 426479 | 20625487 |
| Robust surface reconstruction via Laplace-Beltrami eigen-projection and boundary deformation. | Shi, Yonggang; Lai, Rongjie; Morra, Jonathan H; Dinov, Ivo; Thompson, Paul M; Toga, Arthur W | IEEE transactions on medical imaging | 2010 Dec | 2009-22 | 20624704 |
| Splice form dependence of beta-neurexin/neuroligin binding interactions. | Koehnke, Jesko; Katsamba, Phinikoula S; Ahlsen, Goran; Bahna, Fabiana; Vendome, Jeremie; Honig, Barry; Shapiro, Lawrence; Jin, Xiangshu | Neuron | 2010 Jul 15 | 61-74 | 20624592 |
| Meta-analysis for rare events. | Cai, Tianxi; Parast, Layla; Ryan, Louise | Statistics in medicine. | 2010 Sep 10; | 2078-89 | 20623822 |
| Callosal tissue loss in multiple system atrophy--a one-year follow-up study. | Minnerop, Martina; Luders, Eileen; Specht, Karsten; Ruhlmann, Jurgen; Schimke, Nicole; Thompson, Paul M; Chou, Yi Y; Toga, Arthur W; Abele, Michael; Wullner, Ullrich; Klockgether, Thomas | Movement disorders : official journal of the Movement Disorder Society | 2010 Nov 15 | 2613-20 | 20623690 |
| Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11 years of age. | Ghosh, Satrajit S; Kakunoori, Sita; Augustinack, Jean; Nieto-Castanon, Alfonso; Kovelman, Ioulia; Gaab, Nadine; Christodoulou, Joanna A; Triantafyllou, Christina; Gabrieli, John D E; Fischl, Bruce | NeuroImage | 2010 Oct 15 | 85-93 | 20621657 |
| Sex and age differences in atrophic rates: an ADNI study with n=1368 MRI scans. | Hua, Xue; Hibar, Derrek P; Lee, Suh; Toga, Arthur W; Jack Jr, Clifford R; Weiner, Michael W; Thompson, Paul M; Alzheimer's Disease Neuroimaging Initiative | Neurobiology of aging | 2010 Aug | 1463-80 | 20620666 |
| A Geometric Approach to Joint 2D Region-Based Segmentation and 3D Pose Estimation Using a 3D Shape Prior. | Dambreville, Samuel; Sandhu, Romeil; Yezzi, Anthony; Tannenbaum, Allen | SIAM journal on imaging sciences | 2010 Mar 3 | 110-132 | 20613886 |
| Comparison of actual surgical outcomes and 3-dimensional surgical simulations. | Tucker, Scott; Cevidanes, Lucia Helena Soares; Styner, Martin; Kim, Hyungmin; Reyes, Mauricio; Proffit, William; Turvey, Timothy | Journal of oral and maxillofacial surgery : official journal of the American Association of Oral and Maxillofacial Surgeons. | 2010 Oct; | 2412-21 | 20591553 |
| Anatomical global spatial normalization. | Lancaster, Jack L; Cykowski, Matthew D; McKay, David Reese; Kochunov, Peter V; Fox, Peter T; Rogers, William; Toga, Arthur W; Zilles, Karl; Amunts, Katrin; Mazziotta, John | Neuroinformatics | 2010 Oct | 171-82 | 20582489 |
| Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. | Voight, Benjamin F; Scott, Laura J; Steinthorsdottir, Valgerdur; Morris, Andrew P; Dina, Christian; Welch, Ryan P; Zeggini, Eleftheria; Huth, Cornelia; Aulchenko, Yurii S; Thorleifsson, Gudmar; McCulloch, Laura J; Ferreira, Teresa; Grallert, Harald; Amin, | Nature genetics | 2010 Jul | 579-89 | 20581827 |
| Imaging genomics. | Thompson, Paul M; Martin, Nicholas G; Wright, Margaret J | Current opinion in neurology | 2010 Aug | 368-73 | 20581684 |
| Segmentation of image ensembles via latent atlases. | Riklin-Raviv, Tammy; Van Leemput, Koen; Menze, Bjoern H; Wells 3rd, William M; Golland, Polina | Medical image analysis | 2010 Oct | 654-65 | 20580305 |
| Manifold modeling for brain population analysis. | Gerber, Samuel; Tasdizen, Tolga; Thomas Fletcher, P; Joshi, Sarang; Whitaker, Ross; Alzheimers Disease Neuroimaging Initiative (ADNI) | Medical image analysis | 2010 Oct | 643-53 | 20579930 |
| Tensor kernels for simultaneous fiber model estimation and tractography. | Rathi, Yogesh; Malcolm, James G; Michailovich, Oleg; Westin, Carl-Fredrik; Shenton, Martha E; Bouix, Sylvain | Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine | 2010 Jul | 138-48 | 20572129 |
| Efficient path-based stereo matching with subpixel accuracy. | Donate, Arturo; Liu, Xiuwen; Collins, Emmanuel G | IEEE transactions on systems, man, and cybernetics. Part B, Cybernetics : a publication of the IEEE Systems, Man, and Cybernetics Society | 2011 Feb | 183-95 | 20570775 |
| Obesity is linked with lower brain volume in 700 AD and MCI patients. | Ho, April J; Raji, Cyrus A; Becker, James T; Lopez, Oscar L; Kuller, Lewis H; Hua, Xue; Lee, Suh; Hibar, Derrek; Dinov, Ivo D; Stein, Jason L; Jack Jr, Clifford R; Weiner, Michael W; Toga, Arthur W; Thompson, Paul M; Cardiovascular Health Study; ADNI | Neurobiology of aging | 2010 Aug | 1326-39 | 20570405 |
| CCMA: A Robust, Parallelizable Constraint Method for Molecular Simulations. | Eastman, Peter; Pande, Vijay S | Journal of chemical theory and computation | 2010 Feb 9 | 434-437 | 20563234 |
| A generative model for image segmentation based on label fusion. | Sabuncu, Mert R; Yeo, B T Thomas; Van Leemput, Koen; Fischl, Bruce; Golland, Polina | IEEE transactions on medical imaging | 2010 Oct | 1714-29 | 20562040 |
| Abraham's children in the genome era: major Jewish diaspora populations comprise distinct genetic clusters with shared Middle Eastern Ancestry. | Atzmon, Gil; Hao, Li; Pe'er, Itsik; Velez, Christopher; Pearlman, Alexander; Palamara, Pier Francesco; Morrow, Bernice; Friedman, Eitan; Oddoux, Carole; Burns, Edward; Ostrer, Harry | American journal of human genetics | 2010 Jun 11 | 850-9 | 20560205 |
| Deep depletion of abundant serum proteins reveals low-abundant proteins as potential biomarkers for human ovarian cancer. | Lin, Biaoyang; White, James T; Wu, Jian; Lele, Shashikant; Old, Lloyd J; Hood, Leroy; Odunsi, Kunle | Proteomics. Clinical applications | 2009 Jul 1 | 853-861 | 20559449 |
| Point set registration via particle filtering and stochastic dynamics. | Sandhu, Romeil; Dambreville, Samuel; Tannenbaum, Allen | IEEE transactions on pattern analysis and machine intelligence | 2010 Aug | 1459-73 | 20558877 |
| Relationship Between White Matter Integrity, Attention, and Memory in Schizophrenia: A Diffusion Tensor Imaging Study. | Kubicki, Marek; Niznikiewicz, Margaret; Connor, Elizabeth; Nestor, Paul; Bouix, Sylvain; Dreusicke, Mark; Kikinis, Ron; McCarley, Robert; Shenton, Martha | Brain imaging and behavior | 2009 Jun 1 | 191-201 | 20556231 |
| Polarizable atomic multipole x-ray refinement: hydration geometry and application to macromolecules. | Fenn, Timothy D; Schnieders, Michael J; Brunger, Axel T; Pande, Vijay S | Biophysical journal | 2010 Jun 16 | 2984-92 | 20550911 |
| Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. | Destrieux, Christophe; Fischl, Bruce; Dale, Anders; Halgren, Eric | NeuroImage | 2010 Oct 15 | 1-15 | 20547229 |
| 3D PIB and CSF biomarker associations with hippocampal atrophy in ADNI subjects. | Apostolova, Liana G; Hwang, Kristy S; Andrawis, John P; Green, Amity E; Babakchanian, Sona; Morra, Jonathan H; Cummings, Jeffrey L; Toga, Arthur W; Trojanowski, John Q; Shaw, Leslie M; Jack Jr, Clifford R; Petersen, Ronald C; Aisen, Paul S; Jagust, Willia | Neurobiology of aging | 2010 Aug | 1284-303 | 20538372 |
| Protein interface conservation across structure space. | Zhang, Qiangfeng Cliff; Petrey, Donald; Norel, Raquel; Honig, Barry H | Proceedings of the National Academy of Sciences of the United States of America | 2010 Jun 15 | 10896-901 | 20534496 |
| A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers. | Lefebvre, Celine; Rajbhandari, Presha; Alvarez, Mariano J; Bandaru, Pradeep; Lim, Wei Keat; Sato, Mai; Wang, Kai; Sumazin, Pavel; Kustagi, Manjunath; Bisikirska, Brygida C; Basso, Katia; Beltrao, Pedro; Krogan, Nevan; Gautier, Jean; Dalla-Favera, Riccardo | Molecular systems biology | 2010 Jun 8 | 377 | 20531406 |
| MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structures. | Saha, Mitul; Levitt, Michael; Chiu, Wah | Bioinformatics (Oxford, England) | 2010 Jun 15 | i301-9 | 20529921 |
| Learning task-optimal registration cost functions for localizing cytoarchitecture and function in the cerebral cortex. | Yeo, B T Thomas; Sabuncu, Mert R; Vercauteren, Tom; Holt, Daphne J; Amunts, Katrin; Zilles, Karl; Golland, Polina; Fischl, Bruce | IEEE transactions on medical imaging | 2010 Jul | 1424-41 | 20529736 |
| A coupled global registration and segmentation framework with application to magnetic resonance prostate imagery. | Gao, Yi; Sandhu, Romeil; Fichtinger, Gabor; Tannenbaum, Allen Robert | IEEE transactions on medical imaging | 2010 Oct | 1781-94 | 20529727 |
| Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma. | Palanisamy, Nallasivam; Ateeq, Bushra; Kalyana-Sundaram, Shanker; Pflueger, Dorothee; Ramnarayanan, Kalpana; Shankar, Sunita; Han, Bo; Cao, Qi; Cao, Xuhong; Suleman, Khalid; Kumar-Sinha, Chandan; Dhanasekaran, Saravana M; Chen, Ying-bei; Esgueva, Raquel; | Nature medicine | 2010 Jul | 793-8 | 20526349 |
| PUDGE: a flexible, interactive server for protein structure prediction. | Norel, Raquel; Petrey, Donald; Honig, Barry | Nucleic acids research | 2010 Jul | W550-4 | 20525783 |
| Saliva Ontology: an ontology-based framework for a Salivaomics Knowledge Base. | Ai, Jiye; Smith, Barry; Wong, David T | BMC bioinformatics | 2010 | 302 | 20525291 |
| Prenatal and neonatal brain structure and white matter maturation in children at high risk for schizophrenia. | Gilmore, John H; Kang, Chaeryon; Evans, Dianne D; Wolfe, Honor M; Smith, J Keith; Lieberman, Jeffrey A; Lin, Weili; Hamer, Robert M; Styner, Martin; Gerig, Guido | The American journal of psychiatry. | 2010 Sep; | 1083-91 | 20516153 |
| geWorkbench: an open source platform for integrative genomics. | Floratos, Aris; Smith, Kenneth; Ji, Zhou; Watkinson, John; Califano, Andrea | Bioinformatics (Oxford, England) | 2010 Jul 15 | 1779-80 | 20511363 |
| A UIMA wrapper for the NCBO annotator. | Roeder, Christophe; Jonquet, Clement; Shah, Nigam H; Baumgartner Jr, William A; Verspoor, Karin; Hunter, Lawrence | Bioinformatics (Oxford, England) | 2010 Jul 15 | 1800-1 | 20505005 |
| Image registration of pre-procedural MRI and intra-procedural CT images to aid CT-guided percutaneous cryoablation of renal tumors. | Oguro, Sota; Tuncali, Kemal; Elhawary, Haytham; Morrison, Paul R; Hata, Nobuhiko; Silverman, Stuart G | International journal of computer assisted radiology and surgery | 2011 Jan | 111-7 | 20499194 |
| Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. | Pantazatos, Spiro P; Li, Jianrong; Pavlidis, Paul; Lussier, Yves A | Cancer informatics | 2009 Jun 8 | 75-94 | 20495688 |
| Corpus callosum abnormalities and their association with psychotic symptoms in patients with schizophrenia. | Whitford, Thomas J; Kubicki, Marek; Schneiderman, Jason S; O'Donnell, Lauren J; King, Rebecca; Alvarado, Jorge L; Khan, Usman; Markant, Douglas; Nestor, Paul G; Niznikiewicz, Margaret; McCarley, Robert W; Westin, Carl-Fredrik; Shenton, Martha E | Biological psychiatry | 2010 Jul 1 | 70-7 | 20494336 |
| Muscle contributions to support and progression during single-limb stance in crouch gait. | Steele, Katherine M; Seth, Ajay; Hicks, Jennifer L; Schwartz, Michael S; Delp, Scott L | Journal of biomechanics | 2010 Aug 10 | 2099-105 | 20493489 |
| Current methodologies for translational bioinformatics. | Lussier, Yves A; Butte, Atul J; Hunter, Lawrence | Journal of biomedical informatics | 2010 Jun | 355-7 | 20470899 |
| Genetic pathway-based hierarchical clustering analysis of older adults with cognitive complaints and amnestic mild cognitive impairment using clinical and neuroimaging phenotypes. | Sloan, Chantel D; Shen, Li; West, John D; Wishart, Heather A; Flashman, Laura A; Rabin, Laura A; Santulli, Robert B; Guerin, Stephen J; Rhodes, C Harker; Tsongalis, Gregory J; McAllister, Thomas W; Ahles, Tim A; Lee, Stephen L; Moore, Jason H; Saykin, And | American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics | 2010 Jul | 1060-9 | 20468060 |
| Mining the mind research network: a novel framework for exploring large scale, heterogeneous translational neuroscience research data sources. | Bockholt, Henry J; Scully, Mark; Courtney, William; Rachakonda, Srinivas; Scott, Adam; Caprihan, Arvind; Fries, Jill; Kalyanam, Ravi; Segall, Judith M; de la Garza, Raul; Lane, Susan; Calhoun, Vince D | Frontiers in neuroinformatics. | 2010; | 20461147 | |
| Learning ''graph-mer'' motifs that predict gene expression trajectories in development. | Li, Xuejing; Panea, Casandra; Wiggins, Chris H; Reinke, Valerie; Leslie, Christina | PLoS computational biology. | 2010 Apr 29; | 20454681 | |
| Comparison of manual and automated determination of hippocampal volumes in MCI and early AD. | Shen, Li; Saykin, Andrew J; Kim, Sungeun; Firpi, Hiram A; West, John D; Risacher, Shannon L; McDonald, Brenna C; McHugh, Tara L; Wishart, Heather A; Flashman, Laura A | Brain imaging and behavior | 2010 Mar | 86-95 | 20454594 |
| Charge, hydrophobicity, and confined water: putting past simulations into a simple theoretical framework. | England, Jeremy L; Pande, Vijay S | Biochemistry and cell biology = Biochimie et biologie cellulaire | 2010 Apr | 359-69 | 20453936 |
| The informatics core of the Alzheimer's Disease Neuroimaging Initiative. | Toga, Arthur W; Crawford, Karen L; Alzheimer's Disease Neuroimaging Initiative | Alzheimer's & dementia : the journal of the Alzheimer's Association | 2010 May | 247-56 | 20451873 |
| Consistency Clustering: A Robust Algorithm for Group-wise Registration, Segmentation and Automatic Atlas Construction in Diffusion MRI. | Ziyan, Ulas; Sabuncu, Mert R; Grimson, W Eric L; Westin, Carl-Fredrik | International journal of computer vision | 2009 | 279-290 | 20442792 |
| The ACGT Master Ontology and its applications--towards an ontology-driven cancer research and management system. | Brochhausen, Mathias; Spear, Andrew D; Cocos, Cristian; Weiler, Gabriele; Martín, Luis; Anguita, Alberto; Stenzhorn, Holger; Daskalaki, Evangelia; Schera, Fatima; Schwarz, Ulf; Sfakianakis, Stelios; Kiefer, Stephan; Dörr, Martin; Graf, Norbert; Tsiknakis, Manolis | Journal of biomedical informatics. | 2011 Feb; | 20438862 | |
| Hippocampal, caudate, and ventricular changes in Parkinson's disease with and without dementia. | Apostolova, Liana G; Beyer, Mona; Green, Amity E; Hwang, Kristy S; Morra, Jonathan H; Chou, Yi-Yu; Avedissian, Christina; Aarsland, Dag; Janvin, Carmen C; Larsen, Jan P; Cummings, Jeffrey L; Thompson, Paul M | Movement disorders : official journal of the Movement Disorder Society | 2010 Apr 30 | 687-95 | 20437538 |
| DSGeo: software tools for cross-platform analysis of gene expression data in GEO. | Lacson, Ronilda; Pitzer, Erik; Kim, Jihoon; Galante, Pedro; Hinske, Christian; Ohno-Machado, Lucila | Journal of biomedical informatics | 2010 Oct | 709-15 | 20435161 |
| Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data. | Yang, Xinan; Huang, Yong; Crowson, Matthew; Li, Jianrong; Maitland, Michael L; Lussier, Yves A | Journal of biomedical informatics | 2010 Jun | 376-84 | 20434586 |
| A supermatrix-based molecular phylogeny of the family Drosophilidae. | van der Linde, Kim; Houle, David; Spicer, Greg S; Steppan, Scott J | Genetics research | 2010 Feb | 25-38 | 20433773 |
| An information-theoretic derivation of min-cut-based clustering. | Raj, Anil; Wiggins, Chris H | IEEE transactions on pattern analysis and machine intelligence | 2010 Jun | 988-95 | 20431126 |
| WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis. | Mo, Fan; Mo, Qun; Chen, Yuanyuan; Goodlett, David R; Hood, Leroy; Omenn, Gilbert S; Li, Song; Lin, Biaoyang | BMC bioinformatics | 2010 | 219 | 20429928 |
| An Automated Method for Segmenting White Matter Lesions through Multi-Level Morphometric Feature Classification with Application to Lupus. | Scully, Mark; Anderson, Blake; Lane, Terran; Gasparovic, Charles; Magnotta, Vince; Sibbitt, Wilmer; Roldan, Carlos; Kikinis, Ron; Bockholt, Henry J | Frontiers in human neuroscience. | 2010; | 20428508 | |
| Coarse-Grained Structural Modeling of Molecular Motors Using Multibody Dynamics. | Parker, David; Bryant, Zev; Delp, Scott L | Cellular and molecular bioengineering | 2009 Sep 1 | 366-374 | 20428469 |
| Supervised nonparametric image parcellation. | Sabuncu, Mert R; Yeo, B T Thomas; Van Leemput, Koen; Fischl, Bruce; Golland, Polina | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2009 | 1075-83 | 20426218 |
| Atlas-based improved prediction of magnetic field inhomogeneity for distortion correction of EPI data. | Poynton, Clare; Jenkinson, Mark; Wells 3rd, William | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2009 | 951-9 | 20426203 |
| Lossless online ensemble learning (LOEL) and its application to subcortical segmentation. | Morra, Jonathan H; Tu, Zhuowen; Toga, Arthur W; Thompson, Paul M | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2009 | 432-40 | 20426141 |
| Cortical shape analysis in the Laplace-Beltrami feature space. | Shi, Yonggang; Dinov, Ivo; Toga, Arthur W | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2009 | 208-15 | 20426114 |
| Intrinsic regression models for manifold-valued data. | Shi, Xiaoyan; Styner, Martin; Lieberman, Jeffrey; Ibrahim, Joseph G; Lin, Weili; Zhu, Hongtu | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2009 | 192-9 | 20426112 |
| Particle based shape regression of open surfaces with applications to developmental neuroimaging. | Datar, Manasi; Cates, Joshua; Fletcher, P Thomas; Gouttard, Sylvain; Gerig, Guido; Whitaker, Ross | Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention | 2009 | 167-74 | 20426109 |
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| Using mechanistic Bayesian networks to identify downstream targets of the sonic hedgehog pathway. | Shah, Abhik; Tenzen, Toyoaki; McMahon, Andrew P; Woolf, Peter J | BMC bioinformatics | 2009 | 433 | 20021670 |
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| Prediction of calcium-binding sites by combining loop-modeling with machine learning. | Liu, Tianyun; Altman, Russ B | BMC structural biology | 2009 | 72 | 20003365 |
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| Estimation of central aortic forces in the ballistocardiogram under rest and exercise conditions. | Wiard, Richard M; Kim, Hyun Jin; Figueroa, C; Kovacs, Gregory T A; Taylor, Charles A; Giovangrandi, Laurent | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2009 | 2831-4 | 19964271 |
| Reconstruction and EMG-informed control, simulation and analysis of human movement for athletics: performance improvement and injury prevention. | Demircan, Emel; Khatib, Oussama; Wheeler, Jason; Delp, Scott | Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference | 2009 | 6534-7 | 19964175 |
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| Intrinsic Regression Models for Manifold-Valued Data. | Shi, Xiaoyan; Styner, Martin; Lieberman, Jeffrey; Ibrahim, Joseph G; Lin, Weili; Zhu, Hongtu | Journal of the American Statistical Association. | 2009 Jan 1; | 192-199 | 19960103 |
| A model of the lower limb for analysis of human movement. | Arnold, Edith M; Ward, Samuel R; Lieber, Richard L; Delp, Scott L | Annals of biomedical engineering | 2010 Feb | 269-79 | 19957039 |
| Linking human diseases to animal models using ontology-based phenotype annotation. | Washington, Nicole L; Haendel, Melissa A; Mungall, Christopher J; Ashburner, Michael; Westerfield, Monte; Lewis, Suzanna E | PLoS biology | 2009 Nov | e1000247 | 19956802 |
| A METHODOLOGY FOR ANALYZING CURVATURE IN THE DEVELOPING BRAIN FROM PRETERM TO ADULT. | Pienaar, R; Fischl, B; Caviness, V; Makris, N; Grant, P E | International journal of imaging systems and technology. | 2008 Jun 01; | 19936261 | |
| Massive expansions of Dscam splicing diversity via staggered homologous recombination during arthropod evolution. | Lee, Christopher; Kim, Namshin; Roy, Meenakshi; Graveley, Brenton R | RNA (New York, N.Y.) | 2010 Jan | 91-105 | 19934230 |
| Genetic evidence that raised sex hormone binding globulin (SHBG) levels reduce the risk of type 2 diabetes. | Perry, John R B; Weedon, Michael N; Langenberg, Claudia; Jackson, Anne U; Lyssenko, Valeriya; Sparso, Thomas; Thorleifsson, Gudmar; Grallert, Harald; Ferrucci, Luigi; Maggio, Marcello; Paolisso, Giuseppe; Walker, Mark; Palmer, Colin N A; Payne, Felicity; | Human molecular genetics | 2010 Feb 1 | 535-44 | 19933169 |
| Deform PF-MT: particle filter with mode tracker for tracking nonaffine contour deformations. | Vaswani, Namrata; Rathi, Yogesh; Yezzi, Anthony; Tannenbaum, Allen | IEEE transactions on image processing : a publication of the IEEE Signal Processing Society | 2010 Apr | 841-57 | 19933014 |
| Interactive exploration of neuroanatomical meta-spaces. | Joshi, Shantanu H; Horn, John Darrell Van; Toga, Arthur W | Frontiers in neuroinformatics. | 2009; | 19915734 | |
| Multiscale dynamics of macromolecules using normal mode Langevin. | Izaguirre, J A; Sweet, C R; Pande, V S | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 2010 | 240-51 | 19908376 |
| Constructing multi-resolution Markov State Models (MSMs) to elucidate RNA hairpin folding mechanisms. | Huang, Xuhui; Yao, Yuan; Bowman, Gregory R; Sun, Jian; Guibas, Leonidas J; Carlsson, Gunnar; Pande, Vijay S | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 2010 | 228-39 | 19908375 |
| Predicting RNA structure by multiple template homology modeling. | Flores, Samuel C; Wan, Yaqi; Russell, Rick; Altman, Russ B | Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing | 2010 | 216-27 | 19908374 |
| Why sex matters: brain size independent differences in gray matter distributions between men and women. | Luders, Eileen; Gaser, Christian; Narr, Katherine L; Toga, Arthur W | The Journal of neuroscience : the official journal of the Society for Neuroscience | 2009 Nov 11 | 14265-70 | 19906974 |
| Spectral solutions to stochastic models of gene expression with bursts and regulation. | Mugler, Andrew; Walczak, Aleksandra M; Wiggins, Chris H | Physical review. E, Statistical, nonlinear, and soft matter physics | 2009 Oct | 041921 | 19905356 |
| Spectral solutions to stochastic models of gene expression with bursts and regulation. | Mugler, Andrew; Walczak, Aleksandra M; Wiggins, Chris H | Physical review. E, Statistical, nonlinear, and soft matter physics | 2009 Oct | 41921 | 19905356 |
| Multivariate tensor-based morphometry on surfaces: application to mapping ventricular abnormalities in HIV/AIDS. | Wang, Yalin; Zhang, Jie; Gutman, Boris; Chan, Tony F; Becker, James T; Aizenstein, Howard J; Lopez, Oscar L; Tamburo, Robert J; Toga, Arthur W; Thompson, Paul M | NeuroImage | 2010 Feb 1 | 2141-57 | 19900560 |
| Systematic comparison of the human saliva and plasma proteomes. | Yan, Weihong; Apweiler, Rolf; Balgley, Brian M; Boontheung, Pinmanee; Bundy, Jonathan L; Cargile, Benjamin J; Cole, Steve; Fang, Xueping; Gonzalez-Begne, Mireya; Griffin, Timothy J; Hagen, Fred; Hu, Shen; Wolinsky, Lawrence E; Lee, Cheng S; Malamud, Daniel; Melvin, James E; Menon, Rajasree; Mueller, Michael; Qiao, Renli; Rhodus, Nelson L; Sevinsky, Joel R; States, David; Stephenson, James L; Than, Shawn; Yates, John R; Yu, Weixia; Xie, Hongwei; Xie, Yongming; Omenn, Gilbert S; Loo, Joseph A; Wong, David T | Proteomics. Clinical applications. | 2009 Jan 01; | 19898684 | |
| Local white matter geometry from diffusion tensor gradients. | Savadjiev, Peter; Kindlmann, Gordon L; Bouix, Sylvain; Shenton, Martha E; Westin, Carl-Fredrik | NeuroImage | 2010 Feb 15 | 3175-86 | 19896542 |
| Looking at cerebellar malformations through text-mined interactomes of mice and humans. | Iossifov, Ivan; Rodriguez-Esteban, Raul; Mayzus, Ilya; Millen, Kathleen J; Rzhetsky, Andrey | PLoS computational biology | 2009 Nov | e1000559 | 19893633 |
| STATISTICAL SHAPE ANALYSIS OF BRAIN STRUCTURES USING SPHERICAL WAVELETS. | Nain, D; Styner, M; Niethammer, M; Levitt, J J; Shenton, M E; Gerig, G; Bobick, A; Tannenbaum, A | Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging | 2007 Apr 1 | 209-212 | 19888446 |
| Harnessing gene expression to identify the genetic basis of drug resistance. | Chen, Bo-Juen; Causton, Helen C; Mancenido, Denesy; Goddard, Noel L; Perlstein, Ethan O; Pe'er, Dana | Molecular systems biology | 2009 | 310 | 19888205 |
| An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer. | Wang, Xiao-Song; Prensner, John R; Chen, Guoan; Cao, Qi; Han, Bo; Dhanasekaran, Saravana M; Ponnala, Rakesh; Cao, Xuhong; Varambally, Sooryanarayana; Thomas, Dafydd G; Giordano, Thomas J; Beer, David G; Palanisamy, Nallasivam; Sartor, Maureen A; Omenn, Gi | Nature biotechnology | 2009 Nov | 1005-11 | 19881495 |
| The role of DNA shape in protein-DNA recognition. | Rohs, Remo; West, Sean M; Sosinsky, Alona; Liu, Peng; Mann, Richard S; Honig, Barry | Nature | 2009 Oct 29 | 1248-53 | 19865164 |
| Evaluating the informatics for integrating biology and the bedside system for clinical research. | Deshmukh, Vikrant G; Meystre, Stephane M; Mitchell, Joyce A | BMC medical research methodology | 2009 | 70 | 19863809 |
| Colloquium papers: Numbering the hairs on our heads: the shared challenge and promise of phenomics. | Houle, David | Proceedings of the National Academy of Sciences of the United States of America | 2010 Jan 26 | 1793-9 | 19858477 |
| MRI signal intensity based B-spline nonrigid registration for pre- and intraoperative imaging during prostate brachytherapy. | Oguro, Sota; Tokuda, Junichi; Elhawary, Haytham; Haker, Steven; Kikinis, Ron; Tempany, Clare M C; Hata, Nobuhiko | Journal of magnetic resonance imaging : JMRI | 2009 Nov | 1052-8 | 19856437 |
| The gputools package enables GPU computing in R. | Buckner, Joshua; Wilson, Justin; Seligman, Mark; Athey, Brian; Watson, Stanley; Meng, Fan | Bioinformatics (Oxford, England) | 2010 Jan 1 | 134-5 | 19850754 |
| Efficient nonbonded interactions for molecular dynamics on a graphics processing unit. | Eastman, Peter; Pande, Vijay S | Journal of computational chemistry | 2010 Apr 30 | 1268-72 | 19847780 |
| European admixture on the Micronesian island of Kosrae: lessons from complete genetic information. | Bonnen, Penelope E; Lowe, Jennifer K; Altshuler, David M; Breslow, Jan L; Stoffel, Markus; Friedman, Jeffrey M; Pe'er, Itsik | European journal of human genetics : EJHG | 2010 Mar | 309-16 | 19844264 |
| In vivo deformation of the human abdominal aorta and common iliac arteries with hip and knee flexion: implications for the design of stent-grafts. | Choi, Gilwoo; Shin, Lewis K; Taylor, Charles A; Cheng, Christopher P | Journal of endovascular therapy : an official journal of the International Society of Endovascular Specialists | 2009 Oct | 531-8 | 19842734 |
| Scalable and interactive segmentation and visualization of neural processes in EM datasets. | Jeong, Won-Ki; Beyer, Johanna; Hadwiger, Markus; Vazquez, Amelio; Pfister, Hanspeter; Whitaker, Ross T | IEEE transactions on visualization and computer graphics | 2009 Nov-Dec | 1505-14 | 19834227 |
| Demographic and genetic constraints on evolution. | Gomulkiewicz, Richard; Houle, David | The American naturalist | 2009 Dec | E218-29 | 19821744 |
| Transcriptomic analysis of human lung development. | Kho, Alvin T; Bhattacharya, Soumyaroop; Tantisira, Kelan G; Carey, Vincent J; Gaedigk, Roger; Leeder, J Steven; Kohane, Isaac S; Weiss, Scott T; Mariani, Thomas J | American journal of respiratory and critical care medicine | 2010 Jan 1 | 54-63 | 19815808 |
| Different gene regulation strategies revealed by analysis of binding motifs. | Wunderlich, Zeba; Mirny, Leonid A | Trends in genetics : TIG | 2009 Oct | 434-40 | 19815308 |
| Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models. | Jonikas, Magdalena A; Radmer, Randall J; Altman, Russ B | Bioinformatics (Oxford, England) | 2009 Dec 15 | 3259-66 | 19812110 |
| Triplet repeat length bias and variation in the human transcriptome. | Molla, Michael; Delcher, Arthur; Sunyaev, Shamil; Cantor, Charles; Kasif, Simon | Proceedings of the National Academy of Sciences of the United States of America | 2009 Oct 6 | 17095-100 | 19805156 |
| Structural relationships among proteins with different global topologies and their implications for function annotation strategies. | Petrey, Donald; Fischer, Markus; Honig, Barry | Proceedings of the National Academy of Sciences of the United States of America | 2009 Oct 13 | 17377-82 | 19805138 |
| Rapid equilibrium sampling initiated from nonequilibrium data. | Huang, Xuhui; Bowman, Gregory R; Bacallado, Sergio; Pande, Vijay S | Proceedings of the National Academy of Sciences of the United States of America | 2009 Nov 24 | 19765-9 | 19805023 |
| Progress and challenges in the automated construction of Markov state models for full protein systems. | Bowman, Gregory R; Beauchamp, Kyle A; Boxer, George; Pande, Vijay S | The Journal of chemical physics | 2009 Sep 28 | 124101 | 19791846 |
| Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. | Noy, Natalya F; de Coronado, Sherri; Solbrig, Harold; Fragoso, Gilberto; Hartel, Frank W; Musen, Mark A | Applied ontology | 2008 Jan 1 | 173-190 | 19789731 |
| Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. | Park, Peter J; Kong, Sek Won; Tebaldi, Toma; Lai, Weil R; Kasif, Simon; Kohane, Isaac S | Bioinformatics (Oxford, England) | 2009 Dec 1 | 3121-7 | 19786482 |
| Genetic and environmental influences on the size of specific brain regions in midlife: the VETSA MRI study. | Kremen, William S; Prom-Wormley, Elizabeth; Panizzon, Matthew S; Eyler, Lisa T; Fischl, Bruce; Neale, Michael C; Franz, Carol E; Lyons, Michael J; Pacheco, Jennifer; Perry, Michele E; Stevens, Allison; Schmitt, J Eric; Grant, Michael D; Seidman, Larry J; | NeuroImage | 2010 Jan 15 | 1213-23 | 19786105 |
| Comparing 3 T and 1.5 T MRI for tracking Alzheimer's disease progression with tensor-based morphometry. | Ho, April J; Hua, Xue; Lee, Suh; Leow, Alex D; Yanovsky, Igor; Gutman, Boris; Dinov, Ivo D; Lepore, Natasha; Stein, Jason L; Toga, Arthur W; Jack Jr, Clifford R; Bernstein, Matt A; Reiman, Eric M; Harvey, Danielle J; Kornak, John; Schuff, Norbert; Alexand | Human brain mapping | 2010 Apr | 499-514 | 19780044 |
| Proteomic interrogation of androgen action in prostate cancer cells reveals roles of aminoacyl tRNA synthetases. | Vellaichamy, Adaikkalam; Sreekumar, Arun; Strahler, John R; Rajendiran, Theckelnaycke; Yu, Jindan; Varambally, Sooryanarayana; Li, Yong; Omenn, Gilbert S; Chinnaiyan, Arul M; Nesvizhskii, Alexey I | PloS one | 2009 | e7075 | 19763266 |
| Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. | Yang, Xinan; Huang, Yong; Chen, James L; Xie, Jianming; Sun, Xiao; Lussier, Yves A | BMC bioinformatics | 2009 | S6 | 19761576 |
| Network analysis of genes regulated in renal diseases: implications for a molecular-based classification. | Bhavnani, Suresh K; Eichinger, Felix; Martini, Sebastian; Saxman, Paul; Jagadish, H V; Kretzler, Matthias | BMC bioinformatics | 2009 | S3 | 19761573 |
| Comparison of concept recognizers for building the Open Biomedical Annotator. | Shah, Nigam H; Bhatia, Nipun; Jonquet, Clement; Rubin, Daniel; Chiang, Annie P; Musen, Mark A | BMC bioinformatics | 2009 | S14 | 19761568 |
| Pedagogical Utilization and Assessment of the Statistic Online Computational Resource in Introductory Probability and Statistics Courses. | Dinov, Ivo D; Sanchez, Juana; Christou, Nicolas | Computers & education. | 2008 Jan 1; | 284-300 | 19750185 |
| The role of ontologies for sustainable, semantically interoperable and trustworthy EHR solutions. | Blobel, Bernd; Kalra, Dipak; Koehn, Marc; Lunn, Ken; Pharow, Peter; Ruotsalainen, Pekka; Schulz, Stefan; Smith, Barry | Studies in health technology and informatics. | 2009; | 19745454 | |
| An evolutionary approach to the representation of adverse events. | Ceusters, Werner; Capolupo, Maria; Smith, Barry; De Moor, Georges | Studies in health technology and informatics | 2009 | 537-41 | 19745369 |
| Genome-wide identification of post-translational modulators of transcription factor activity in human B cells. | Wang, Kai; Saito, Masumichi; Bisikirska, Brygida C; Alvarez, Mariano J; Lim, Wei Keat; Rajbhandari, Presha; Shen, Qiong; Nemenman, Ilya; Basso, Katia; Margolin, Adam A; Klein, Ulf; Dalla-Favera, Riccardo; Califano, Andrea | Nature biotechnology | 2009 Sep | 829-39 | 19741643 |
| Importance of ligand reorganization free energy in protein-ligand binding-affinity prediction. | Yang, Chao-Yie; Sun, Haiying; Chen, Jianyong; Nikolovska-Coleska, Zaneta; Wang, Shaomeng | Journal of the American Chemical Society | 2009 Sep 30 | 13709-21 | 19736924 |
| Localization of deformations within the amygdala in individuals with psychopathy. | Yang, Yaling; Raine, Adrian; Narr, Katherine L; Colletti, Patrick; Toga, Arthur W | Archives of general psychiatry | 2009 Sep | 986-94 | 19736355 |
| Meta-analysis of glioblastoma multiforme versus anaplastic astrocytoma identifies robust gene markers. | Dreyfuss, Jonathan M; Johnson, Mark D; Park, Peter J | Molecular cancer | 2009 | 71 | 19732454 |
| Widespread cortical thinning is a robust anatomical marker for attention-deficit/hyperactivity disorder. | Narr, Katherine L; Woods, Roger P; Lin, James; Kim, John; Phillips, Owen R; Del'Homme, Melissa; Caplan, Rochelle; Toga, Arthur W; McCracken, James T; Levitt, Jennifer G | Journal of the American Academy of Child and Adolescent Psychiatry | 2009 Oct | 1014-22 | 19730275 |
| Elucidating a magnetic resonance imaging-based neuroanatomic biomarker for psychosis: classification analysis using probabilistic brain atlas and machine learning algorithms. | Sun, Daqiang; van Erp, Theo G M; Thompson, Paul M; Bearden, Carrie E; Daley, Melita; Kushan, Leila; Hardt, Molly E; Nuechterlein, Keith H; Toga, Arthur W; Cannon, Tyrone D | Biological psychiatry | 2009 Dec 1 | 1055-60 | 19729150 |
| Genephony: a knowledge management tool for genome-wide research. | Nuzzo, Angelo; Riva, Alberto | BMC bioinformatics | 2009 | 278 | 19728881 |
| The University of Michigan Honest Broker: a Web-based service for clinical and translational research and practice. | Boyd, Andrew D; Saxman, Paul R; Hunscher, Dale A; Smith, Kevin A; Morris, Timothy D; Kaston, Michelle; Bayoff, Frederick; Rogers, Bruce; Hayes, Pamela; Rajeev, Namrata; Kline-Rogers, Eva; Eagle, Kim; Clauw, Daniel; Greden, John F; Green, Lee A; Athey, Bri | Journal of the American Medical Informatics Association : JAMIA | 2009 Nov-Dec | 784-91 | 19717803 |
| Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation. | Fei, Jingyi; Bronson, Jonathan E; Hofman, Jake M; Srinivas, Rathi L; Wiggins, Chris H; Gonzalez Jr, Ruben L | Proceedings of the National Academy of Sciences of the United States of America | 2009 Sep 15 | 15702-7 | 19717422 |
| Classification of spatially unaligned fMRI scans. | Anderson, Ariana; Dinov, Ivo D; Sherin, Jonathan E; Quintana, Javier; Yuille, A L; Cohen, Mark S | NeuroImage | 2010 Feb 1 | 2509-19 | 19712744 |
| Spherical demons: fast diffeomorphic landmark-free surface registration. | Yeo, B T Thomas; Sabuncu, Mert R; Vercauteren, Tom; Ayache, Nicholas; Fischl, Bruce; Golland, Polina | IEEE transactions on medical imaging | 2010 Mar | 650-68 | 19709963 |
| BatchGenAna: a batch platform for large-scale genomic analysis of mammalian small RNAs. | Ying, Xiaomin; Kim, You Jung; Mao, Yiqing; Liu, Ming; Hou, Yanyan; Li, Hua; Wang, Xiaolei; Zhao, Yalin; Zhao, Dongsheng; Patel, Jignesh M; Li, Wuju | Bioinformation. | 2009 Apr 21; | 19707298 | |
| Integrated navigation and control software system for MRI-guided robotic prostate interventions. | Tokuda, Junichi; Fischer, Gregory S; DiMaio, Simon P; Gobbi, David G; Csoma, Csaba; Mewes, Philip W; Fichtinger, Gabor; Tempany, Clare M; Hata, Nobuhiko | Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society | 2010 Jan | 3-8 | 19699057 |
| A variational image-based approach to the correction of susceptibility artifacts in the alignment of diffusion weighted and structural MRI. | Tao, Ran; Fletcher, P Thomas; Gerber, Samuel; Whitaker, Ross T | Information processing in medical imaging : proceedings of the ... conference | 2009 | 664-75 | 19694302 |
| Cortical correspondence with probabilistic fiber connectivity. | Oguz, Ipek; Niethammer, Marc; Cates, Josh; Whitaker, Ross; Fletcher, Thomas; Vachet, Clement; Styner, Martin | Information processing in medical imaging : proceedings of the ... conference | 2009 | 651-63 | 19694301 |
| A framework for brain registration via simultaneous surface and volume flow. | Joshi, Anand; Leahy, Richard; Toga, Arthur W; Shattuck, David | Information processing in medical imaging : proceedings of the ... conference | 2009 | 576-88 | 19694295 |
| HARDI denoising: variational regularization of the spherical apparent diffusion coefficient sADC. | Kim, Yunho; Thompson, Paul M; Toga, Arthur W; Vese, Luminita; Zhan, Liang | Information processing in medical imaging : proceedings of the ... conference | 2009 | 515-27 | 19694290 |
| Inverse-consistent surface mapping with Laplace-Beltrami eigen-features. | Shi, Yonggang; Morra, Jonathan H; Thompson, Paul M; Toga, Arthur W | Information processing in medical imaging : proceedings of the ... conference | 2009 | 467-78 | 19694286 |
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| Tractography segmentation using a hierarchical Dirichlet processes mixture model. | Wang, Xiaogang; Grimson, W Eric L; Westin, Carl-Fredrik | Information processing in medical imaging : proceedings of the ... conference | 2009 | 101-13 | 19694256 |
| Multimodal functional imaging using fMRI-informed regional EEG/MEG source estimation. | Oun, Wanmei; Numenmaa, Aapo; Hamalainen, Matti; Golland, Polina | Information processing in medical imaging : proceedings of the ... conference | 2009 | 88-100 | 19694255 |
| Symptomatic and functional correlates of regional brain physiology during working memory processing in patients with recent onset schizophrenia. | Sanz, Jacqueline H; Karlsgodt, Katherine H; Bearden, Carrie E; van Erp, Theo G M; Nandy, Rajesh R; Ventura, Joseph; Nuechterlein, Keith; Cannon, Tyrone D | Psychiatry research. | 2009 Sep 30; | 177-82 | 19692211 |
| The N-Myc-DLL3 cascade is suppressed by the ubiquitin ligase Huwe1 to inhibit proliferation and promote neurogenesis in the developing brain. | Zhao, Xudong; D' Arca, Domenico; Lim, Wei Keat; Brahmachary, Manisha; Carro, Maria Stella; Ludwig, Thomas; Cardo, Carlos Cordon; Guillemot, Francois; Aldape, Ken; Califano, Andrea; Iavarone, Antonio; Lasorella, Anna | Developmental cell | 2009 Aug | 210-21 | 19686682 |
| New resource for the computation of cartilage biphasic material properties with the interpolant response surface method. | Keenan, Kathryn E; Kourtis, Lampros C; Besier, Thor F; Lindsey, Derek P; Gold, Garry E; Delp, Scott L; Beaupre, Gary S | Computer methods in biomechanics and biomedical engineering | 2009 Aug | 415-22 | 19675978 |
| Novel opportunities for computational biology and sociology in drug discovery. | Yao, Lixia; Evans, James A; Rzhetsky, Andrey | Trends in biotechnology | 2009 Sep | 531-40 | 19674801 |
| Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor. | Lin, Biaoyang; Wang, Jun; Hong, Xu; Yan, Xiaowei; Hwang, Daehee; Cho, Ji-Hoon; Yi, Danielle; Utleg, Angelita G; Fang, Xuefeng; Schones, Dustin E; Zhao, Keji; Omenn, Gilbert S; Hood, Leroy | PloS one | 2009 | e6589 | 19668381 |
| Robotics-based synthesis of human motion. | Khatib, O; Demircan, E; De Sapio, V; Sentis, L; Besier, T; Delp, S | Journal of physiology, Paris | 2009 Sep-Dec | 211-9 | 19665552 |
| Conflict monitoring in early frontotemporal dementia. | Krueger, C E; Bird, A C; Growdon, M E; Jang, J Y; Miller, B L; Kramer, J H | Neurology | 2009 Aug 4 | 349-55 | 19652138 |
| Efficient, Distributed and Interactive Neuroimaging Data Analysis Using the LONI Pipeline. | Dinov, Ivo D; Van Horn, John D; Lozev, Kamen M; Magsipoc, Rico; Petrosyan, Petros; Liu, Zhizhong; Mackenzie-Graham, Allan; Eggert, Paul; Parker, Douglas S; Toga, Arthur W | Frontiers in neuroinformatics. | 2009; | 19649168 | |
| Callosal atrophy in mild cognitive impairment and Alzheimer's disease: different effects in different stages. | Di Paola, Margherita; Luders, Eileen; Di Iulio, Fulvia; Cherubini, Andrea; Passafiume, Domenico; Thompson, Paul M; Caltagirone, Carlo; Toga, Arthur W; Spalletta, Gianfranco | NeuroImage | 2010 Jan 1 | 141-9 | 19643188 |
| Anatomical atlas-guided diffuse optical tomography of brain activation. | Custo, Anna; Boas, David A; Tsuzuki, Daisuke; Dan, Ippeita; Mesquita, Rickson; Fischl, Bruce; Grimson, W Eric L; Wells 3rd, Williams | NeuroImage | 2010 Jan 1 | 561-7 | 19643185 |
| Brain structure changes visualized in early- and late-onset blind subjects. | Lepore, Natasha; Voss, Patrice; Lepore, Franco; Chou, Yi-Yu; Fortin, Madeleine; Gougoux, Frederic; Lee, Agatha D; Brun, Caroline; Lassonde, Maryse; Madsen, Sarah K; Toga, Arthur W; Thompson, Paul M | NeuroImage | 2010 Jan 1 | 134-40 | 19643183 |
| Surface feature-guided mapping of cerebral metabolic changes in cognitively normal and mildly impaired elderly. | Apostolova, Liana G; Thompson, Paul M; Rogers, Steve A; Dinov, Ivo D; Zoumalan, Charleen; Steiner, Calen A; Siu, Erin; Green, Amity E; Small, Gary W; Toga, Arthur W; Cummings, Jeffrey L; Phelps, Michael E; Silverman, Daniel H | Molecular imaging and biology : MIB : the official publication of the Academy of Molecular Imaging | 2010 Apr | 218-24 | 19636640 |
| Comparing registration methods for mapping brain change using tensor-based morphometry. | Yanovsky, Igor; Leow, Alex D; Lee, Suh; Osher, Stanley J; Thompson, Paul M | Medical image analysis | 2009 Oct | 679-700 | 19631572 |
| Engineered myosin VI motors reveal minimal structural determinants of directionality and processivity. | Liao, Jung-Chi; Elting, Mary Williard; Delp, Scott L; Spudich, James A; Bryant, Zev | Journal of molecular biology | 2009 Oct 2 | 862-7 | 19631216 |
| Expression differences by continent of origin point to the immortalization process. | Davis, Adam R; Kohane, Isaac S | Human molecular genetics | 2009 Oct 15 | 3864-75 | 19628477 |
| Patients' perceptions of self-management of chronic low back pain: evidence for enhancing patient education and support. | Cooper, Kay; Smith, Blair H; Hancock, Elizabeth | Physiotherapy. | 2009 Mar; | 43-50 | 19627685 |
| OpenIGTLink: an open network protocol for image-guided therapy environment. | Tokuda, Junichi; Fischer, Gregory S; Papademetris, Xenophon; Yaniv, Ziv; Ibanez, Luis; Cheng, Patrick; Liu, Haiying; Blevins, Jack; Arata, Jumpei; Golby, Alexandra J; Kapur, Tina; Pieper, Steve; Burdette, Everette C; Fichtinger, Gabor; Tempany, Clare M; H | The international journal of medical robotics + computer assisted surgery : MRCAS | 2009 Dec | 423-34 | 19621334 |
| Lack of relationship between psychological denial and unawareness of illness in schizophrenia-spectrum disorders. | Kruck, Carrie L; Flashman, Laura A; Roth, Robert M; Koven, Nancy S; McAllister, Thomas W; Saykin, Andrew J | Psychiatry research | 2009 Aug 30 | 33-8 | 19616309 |
| Improving structure-based function prediction using molecular dynamics. | Glazer, Dariya S; Radmer, Randall J; Altman, Russ B | Structure (London, England : 1993) | 2009 Jul 15 | 919-29 | 19604472 |
| Exploring predictors of outcome in the psychosis prodrome: implications for early identification and intervention. | Niendam, Tara A; Jalbrzikowski, Maria; Bearden, Carrie E | Neuropsychology review. | 2009 Sep; | 280-93 | 19597747 |
| Chimeric transcript discovery by paired-end transcriptome sequencing. | Maher, Christopher A; Palanisamy, Nallasivam; Brenner, John C; Cao, Xuhong; Kalyana-Sundaram, Shanker; Luo, Shujun; Khrebtukova, Irina; Barrette, Terrence R; Grasso, Catherine; Yu, Jindan; Lonigro, Robert J; Schroth, Gary; Kumar-Sinha, Chandan; Chinnaiyan | Proceedings of the National Academy of Sciences of the United States of America | 2009 Jul 28 | 12353-8 | 19592507 |
| Purkinje cell loss in experimental autoimmune encephalomyelitis. | MacKenzie-Graham, Allan; Tiwari-Woodruff, Seema K; Sharma, Gaurav; Aguilar, Cynthia; Vo, Kieumai T; Strickland, Lauren V; Morales, Laurie; Fubara, Boma; Martin, Melanie; Jacobs, Russell E; Johnson, G Allan; Toga, Arthur W; Voskuhl, Rhonda R | NeuroImage | 2009 Dec | 637-51 | 19589388 |
| Minute effects of sex on the aging brain: a multisample magnetic resonance imaging study of healthy aging and Alzheimer's disease. | Fjell, Anders M; Westlye, Lars T; Amlien, Inge; Espeseth, Thomas; Reinvang, Ivar; Raz, Naftali; Agartz, Ingrid; Salat, David H; Greve, Doug N; Fischl, Bruce; Dale, Anders M; Walhovd, Kristine B | The Journal of neuroscience : the official journal of the Society for Neuroscience | 2009 Jul 8 | 8774-83 | 19587284 |
| Age-associated alterations in cortical gray and white matter signal intensity and gray to white matter contrast. | Salat, D H; Lee, S Y; van der Kouwe, A J; Greve, D N; Fischl, B; Rosas, H D | NeuroImage | 2009 Oct 15 | 21-8 | 19580876 |
| Accurate and robust brain image alignment using boundary-based registration. | Greve, Douglas N; Fischl, Bruce | NeuroImage | 2009 Oct 15 | 63-72 | 19573611 |
| Functional and anatomical connectivity abnormalities in left inferior frontal gyrus in schizophrenia. | Jeong, Bumseok; Wible, Cynthia G; Hashimoto, Ryu-ichiro; Kubicki, Marek | Human brain mapping | 2009 Dec | 4138-51 | 19569073 |
| The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories. | Weber, Griffin M; Murphy, Shawn N; McMurry, Andrew J; Macfadden, Douglas; Nigrin, Daniel J; Churchill, Susanne; Kohane, Isaac S | Journal of the American Medical Informatics Association : JAMIA | 2009 Sep-Oct | 624-30 | 19567788 |
| DT-REFinD: diffusion tensor registration with exact finite-strain differential. | Yeo, B T Thomas; Vercauteren, Tom; Fillard, Pierre; Peyrat, Jean-Marc; Pennec, Xavier; Golland, Polina; Ayache, Nicholas; Clatz, Olivier | IEEE transactions on medical imaging | 2009 Dec | 1914-28 | 19556193 |
| Linking molecular affinity and cellular specificity in cadherin-mediated adhesion. | Katsamba, P; Carroll, K; Ahlsen, G; Bahna, F; Vendome, J; Posy, S; Rajebhosale, M; Price, S; Jessell, T M; Ben-Shaul, A; Shapiro, L; Honig, Barry H | Proceedings of the National Academy of Sciences of the United States of America. | 2009 Jul 14; | 11594-9 | 19553217 |
| Perk Station--Percutaneous surgery training and performance measurement platform. | Vikal, Siddharth; U-Thainual, Paweena; Carrino, John A; Iordachita, Iulian; Fischer, Gregory S; Fichtinger, Gabor | Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society | 2010 Jan | 19-32 | 19539446 |
| Gene regulatory networks in embryonic stem cells and brain development. | Ghosh, Dhimankrishna; Yan, Xiaowei; Tian, Qiang | Birth defects research. Part C, Embryo today : reviews | 2009 Jun | 182-91 | 19530135 |
| Effects of prenatal methamphetamine exposure on verbal memory revealed with functional magnetic resonance imaging. | Lu, Lisa H; Johnson, Arianne; O'Hare, Elizabeth D; Bookheimer, Susan Y; Smith, Lynne M; O'Connor, Mary J; Sowell, Elizabeth R | Journal of developmental and behavioral pediatrics : JDBP | 2009 Jun | 185-92 | 19525715 |
| How to build a tight but permeable glomerular junction. | Martini, Sebastian; Kretzler, Matthias | Journal of the American Society of Nephrology : JASN | 2009 Jul | 1420-1 | 19520750 |
| Multisite neuroimaging trials. | Van Horn, John Darrell; Toga, Arthur W | Current opinion in neurology | 2009 Aug | 370-8 | 19506479 |
| Using genome-wide measurements for computational prediction of SH2-peptide interactions. | Wunderlich, Zeba; Mirny, Leonid A | Nucleic acids research | 2009 Aug | 4629-41 | 19502496 |
| Increased sensitivity to effects of normal aging and Alzheimer's disease on cortical thickness by adjustment for local variability in gray/white contrast: a multi-sample MRI study. | Westlye, Lars T; Walhovd, Kristine B; Dale, Anders M; Espeseth, Thomas; Reinvang, Ivar; Raz, Naftali; Agartz, Ingrid; Greve, Douglas N; Fischl, Bruce; Fjell, Anders M | NeuroImage | 2009 Oct 1 | 1545-57 | 19501655 |
| BioPortal: ontologies and integrated data resources at the click of a mouse. | Noy, Natalya F; Shah, Nigam H; Whetzel, Patricia L; Dai, Benjamin; Dorf, Michael; Griffith, Nicholas; Jonquet, Clement; Rubin, Daniel L; Storey, Margaret-Anne; Chute, Christopher G; Musen, Mark A | Nucleic acids research | 2009 Jul | W170-3 | 19483092 |
| Dealing with socially constructed concepts in an ontology. | Koepsell, David; Smith, Barry | Journal of empirical research on human research ethics : JERHRE. | 2009 Jun; | 19480594 | |
| Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. | Wang, Dong; Bushnell, David A; Huang, Xuhui; Westover, Kenneth D; Levitt, Michael; Kornberg, Roger D | Science (New York, N.Y.) | 2009 May 29 | 1203-6 | 19478184 |
| GAGE: generally applicable gene set enrichment for pathway analysis. | Luo, Weijun; Friedman, Michael S; Shedden, Kerby; Hankenson, Kurt D; Woolf, Peter J | BMC bioinformatics | 2009 | 161 | 19473525 |
| Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs. | Khan, Aly A; Betel, Doron; Miller, Martin L; Sander, Chris; Leslie, Christina S; Marks, Debora S | Nature biotechnology | 2009 Jun | 549-55 | 19465925 |
| Range of motion after computed tomography-based simulation of intertrochanteric corrective osteotomy in cases of slipped capital femoral epiphysis: comparison of uniplanar flexion osteotomy and multiplanar flexion, valgisation, and rotational osteotomies. | Mamisch, Tallal Charles; Kim, Young-Jo; Richolt, Jens; Zilkens, Christoph; Kikinis, Ron; Millis, Michael; Kordelle, Jens | Journal of pediatric orthopedics | 2009 Jun | 336-40 | 19461373 |
| Comparison of AdaBoost and support vector machines for detecting Alzheimer's disease through automated hippocampal segmentation. | Morra, Jonathan H; Tu, Zhuowen; Apostolova, Liana G; Green, Amity E; Toga, Arthur W; Thompson, Paul M | IEEE transactions on medical imaging | 2010 Jan | 30-43 | 19457748 |
| Multiscale modeling in computational biomechanics. | Tawhai, Merryn; Bischoff, Jeff; Einstein, Daniel; Erdemir, Ahmet; Guess, Trent; Reinbolt, Jeff | IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society | 2009 May-Jun | 41-9 | 19457733 |
| Active fibers: matching deformable tract templates to diffusion tensor images. | Eckstein, Ilya; Shattuck, David W; Stein, Jason L; McMahon, Katie L; de Zubicaray, Greig; Wright, Margaret J; Thompson, Paul M; Toga, Arthur W | NeuroImage | 2009 Aug | T82-9 | 19457360 |
| DTNBP1 is associated with imaging phenotypes in schizophrenia. | Narr, Katherine L; Szeszko, Philip R; Lencz, Todd; Woods, Roger P; Hamilton, Liberty S; Phillips, Owen; Robinson, Delbert; Burdick, Katherine E; DeRosse, Pamela; Kucherlapati, Raju; Thompson, Paul M; Toga, Arthur W; Malhotra, Anil K; Bilder, Robert M | Human brain mapping | 2009 Nov | 3783-94 | 19449336 |
| Alterations in functional activation in euthymic bipolar disorder and schizophrenia during a working memory task. | Hamilton, Liberty S; Altshuler, Lori L; Townsend, Jennifer; Bookheimer, Susan Y; Phillips, Owen R; Fischer, Jeffrey; Woods, Roger P; Mazziotta, John C; Toga, Arthur W; Nuechterlein, Keith H; Narr, Katherine L | Human brain mapping | 2009 Dec | 3958-69 | 19449330 |
| Thalamo-frontal white matter alterations in chronic schizophrenia: a quantitative diffusion tractography study. | Oh, Jungsu S; Kubicki, Marek; Rosenberger, Gudrun; Bouix, Sylvain; Levitt, James J; McCarley, Robert W; Westin, Carl-Fredrik; Shenton, Martha E | Human brain mapping | 2009 Nov | 3812-25 | 19449328 |
| Overlapping pools for high-throughput targeted resequencing. | Prabhu, Snehit; Pe'er, Itsik | Genome research | 2009 Jul | 1254-61 | 19447964 |
| Targeting stem cells-clinical implications for cancer therapy. | Tu, Lan Chun; Foltz, Greg; Lin, Edward; Hood, Leroy; Tian, Qiang | Current stem cell research & therapy | 2009 May | 147-53 | 19442199 |
| Disease classification with hippocampal shape invariants. | Gutman, Boris; Wang, Yalin; Morra, Jonathan; Toga, Arthur W; Thompson, Paul M | Hippocampus | 2009 Jun | 572-8 | 19437498 |
| Genome-wide association study identifies eight loci associated with blood pressure. | Newton-Cheh, Christopher; Johnson, Toby; Gateva, Vesela; Tobin, Martin D; Bochud, Murielle; Coin, Lachlan; Najjar, Samer S; Zhao, Jing Hua; Heath, Simon C; Eyheramendy, Susana; Papadakis, Konstantinos; Voight, Benjamin F; Scott, Laura J; Zhang, Feng; Farr | Nature genetics | 2009 Jun | 666-76 | 19430483 |
| Open Biomedical Ontology-based Medline exploration. | Xuan, Weijian; Dai, Manhong; Mirel, Barbara; Song, Jean; Athey, Brian; Watson, Stanley J; Meng, Fan | BMC bioinformatics | 2009 | S6 | 19426463 |
| TGF-beta sign |